Basic Statistics
Measure | Value |
---|---|
Filename | DRR015255_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9810758 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 40431 | 0.41210882991915604 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 33566 | 0.3421346240524942 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19978 | 0.2036336030304692 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGT | 15698 | 0.1600080238448446 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 24130 | 0.0 | 55.34338 | 1 |
GTATCAA | 45625 | 0.0 | 41.97541 | 1 |
ATCAACG | 58215 | 0.0 | 32.570522 | 3 |
TCAACGC | 58930 | 0.0 | 32.15645 | 4 |
TATCAAC | 60795 | 0.0 | 31.390488 | 2 |
CAACGCA | 62000 | 0.0 | 30.579493 | 5 |
AACGCAG | 64160 | 0.0 | 29.64224 | 6 |
GTGGTAT | 9880 | 0.0 | 27.928679 | 1 |
TGGTATC | 9850 | 0.0 | 27.314663 | 2 |
ACGCAGA | 70825 | 0.0 | 26.64052 | 7 |
CGCAGAG | 71245 | 0.0 | 26.32443 | 8 |
GCAGAGT | 74235 | 0.0 | 24.869265 | 9 |
GTACATG | 47460 | 0.0 | 24.361397 | 1 |
TACATGG | 45550 | 0.0 | 23.79664 | 2 |
ACATGGG | 47850 | 0.0 | 21.853636 | 3 |
GAGTACT | 45250 | 0.0 | 21.689487 | 12-13 |
GTACTTT | 45925 | 0.0 | 21.01121 | 14-15 |
CAGAGTA | 73290 | 0.0 | 20.880562 | 10-11 |
AGAGTAC | 70105 | 0.0 | 20.673468 | 10-11 |
AGTACTT | 44975 | 0.0 | 20.53667 | 12-13 |