Basic Statistics
Measure | Value |
---|---|
Filename | DRR015218_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5122851 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 30024 | 0.5860798996496287 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 25097 | 0.489902985661695 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16579 | 0.3236283858343723 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6791 | 0.13256290296165163 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 14200 | 0.0 | 53.514282 | 1 |
GTATCAA | 26145 | 0.0 | 41.389168 | 1 |
ATCAACG | 34025 | 0.0 | 31.520823 | 3 |
TATCAAC | 34585 | 0.0 | 31.133818 | 2 |
TCAACGC | 34620 | 0.0 | 31.032312 | 4 |
CAACGCA | 35865 | 0.0 | 30.096565 | 5 |
AACGCAG | 37035 | 0.0 | 29.256393 | 6 |
GTGGTAT | 5895 | 0.0 | 28.723274 | 1 |
TATAACG | 495 | 0.0 | 27.605062 | 2 |
ACGCAGA | 41355 | 0.0 | 26.046623 | 7 |
CGCAGAG | 41785 | 0.0 | 25.636942 | 8 |
TGGTATC | 6495 | 0.0 | 25.105944 | 2 |
GCAGAGT | 43720 | 0.0 | 24.023272 | 9 |
TAACGCA | 625 | 0.0 | 23.317566 | 4 |
GTACATG | 26400 | 0.0 | 23.113798 | 1 |
TACATGG | 26575 | 0.0 | 22.401392 | 2 |
TACCTGG | 4335 | 0.0 | 21.64466 | 2 |
ACATGGG | 27210 | 0.0 | 21.055077 | 3 |
AGAGTAC | 41405 | 0.0 | 20.786846 | 10-11 |
GAGTACT | 28285 | 0.0 | 20.723148 | 12-13 |