Basic Statistics
Measure | Value |
---|---|
Filename | DRR015203_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13973458 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29244 | 0.20928248397783852 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 23189 | 0.16595033240877097 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14984 | 0.10723186773095106 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 22655 | 0.0 | 53.303318 | 1 |
GTATCAA | 42600 | 0.0 | 41.780888 | 1 |
ATCAACG | 54695 | 0.0 | 32.32326 | 3 |
TCAACGC | 55365 | 0.0 | 31.91474 | 4 |
TATCAAC | 58595 | 0.0 | 30.251202 | 2 |
CAACGCA | 61150 | 0.0 | 28.945225 | 5 |
AACGCAG | 63290 | 0.0 | 28.003876 | 6 |
ACGCAGA | 67500 | 0.0 | 25.919916 | 7 |
CGCAGAG | 69560 | 0.0 | 25.047487 | 8 |
GTGGTAT | 8905 | 0.0 | 24.926378 | 1 |
GTACATG | 64410 | 0.0 | 24.789911 | 1 |
TACATGG | 62720 | 0.0 | 24.080091 | 2 |
GCAGAGT | 72645 | 0.0 | 23.413952 | 9 |
ACATGGG | 67360 | 0.0 | 21.778044 | 3 |
TGGTATC | 10110 | 0.0 | 20.987152 | 2 |
CAGAGTA | 72060 | 0.0 | 19.460695 | 10-11 |
AGAGTAC | 69815 | 0.0 | 19.21344 | 10-11 |
GTACTTT | 37475 | 0.0 | 19.072563 | 14-15 |
CATGGGG | 45000 | 0.0 | 18.889252 | 4 |
AGTACTT | 38850 | 0.0 | 18.334394 | 12-13 |