Basic Statistics
Measure | Value |
---|---|
Filename | DRR015197_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12150230 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 27894 | 0.22957590103232614 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 26248 | 0.21602883237601261 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14404 | 0.1185491961880557 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGT | 13384 | 0.11015429337551635 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 24360 | 0.0 | 60.290974 | 1 |
GTATCAA | 46775 | 0.0 | 41.047493 | 1 |
GTGGTAT | 8075 | 0.0 | 38.857655 | 1 |
TGGTATC | 8575 | 0.0 | 35.657024 | 2 |
ATCAACG | 60085 | 0.0 | 31.596083 | 3 |
TCAACGC | 60915 | 0.0 | 31.292402 | 4 |
TATCAAC | 62100 | 0.0 | 30.750858 | 2 |
CAACGCA | 66245 | 0.0 | 28.774652 | 5 |
AACGCAG | 69930 | 0.0 | 27.307474 | 6 |
CGCAGAG | 76380 | 0.0 | 24.971071 | 8 |
GTACATG | 60465 | 0.0 | 24.786983 | 1 |
ACGCAGA | 77020 | 0.0 | 24.757666 | 7 |
TACATGG | 59485 | 0.0 | 24.316048 | 2 |
GCAGAGT | 80475 | 0.0 | 23.344501 | 9 |
ACATGGG | 61905 | 0.0 | 22.201174 | 3 |
CATGGGT | 10785 | 0.0 | 20.669268 | 4 |
CAGAGTA | 78735 | 0.0 | 20.208397 | 10-11 |
GTACTTT | 46240 | 0.0 | 19.636473 | 14-15 |
GAGTACT | 48370 | 0.0 | 19.385576 | 12-13 |
CATGGGG | 31145 | 0.0 | 19.310444 | 4 |