Basic Statistics
Measure | Value |
---|---|
Filename | DRR015178_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11485783 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 32849 | 0.28599704521668223 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 30320 | 0.2639785202280071 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17444 | 0.15187471328685212 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGT | 14486 | 0.12612113601658678 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 28480 | 0.0 | 60.15509 | 1 |
GTATCAA | 53705 | 0.0 | 40.952217 | 1 |
TGGTATC | 9500 | 0.0 | 40.48883 | 2 |
GTGGTAT | 9755 | 0.0 | 40.39642 | 1 |
TATCAAC | 69855 | 0.0 | 31.312727 | 2 |
ATCAACG | 69920 | 0.0 | 31.146734 | 3 |
TCAACGC | 71170 | 0.0 | 30.587885 | 4 |
CAACGCA | 74490 | 0.0 | 29.230927 | 5 |
AACGCAG | 79170 | 0.0 | 27.577505 | 6 |
GTACATG | 55880 | 0.0 | 24.970171 | 1 |
CGCAGAG | 87950 | 0.0 | 24.823595 | 8 |
ACGCAGA | 89110 | 0.0 | 24.55022 | 7 |
TACATGG | 55285 | 0.0 | 24.265108 | 2 |
GCAGAGT | 93360 | 0.0 | 23.084156 | 9 |
ACATGGG | 55950 | 0.0 | 22.510466 | 3 |
GAGTACT | 58750 | 0.0 | 20.57839 | 12-13 |
CATGGGT | 12345 | 0.0 | 20.478405 | 4 |
CAGAGTA | 89780 | 0.0 | 20.40013 | 10-11 |
CATGGGG | 24890 | 0.0 | 19.74958 | 4 |
GTACTTT | 59455 | 0.0 | 19.665394 | 14-15 |