Basic Statistics
Measure | Value |
---|---|
Filename | DRR015174_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26140372 |
Sequences flagged as poor quality | 0 |
Sequence length | 97 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 44151 | 0.16889966217772265 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 35513 | 0.13585499089301406 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 43865 | 0.0 | 55.262527 | 1 |
GTATCAA | 84170 | 0.0 | 42.767147 | 1 |
ATCAACG | 108230 | 0.0 | 32.81552 | 3 |
TATCAAC | 109395 | 0.0 | 32.601665 | 2 |
TCAACGC | 109055 | 0.0 | 32.576492 | 4 |
CAACGCA | 115715 | 0.0 | 30.706827 | 5 |
GTGGTAT | 16900 | 0.0 | 30.524883 | 1 |
AACGCAG | 122415 | 0.0 | 29.101276 | 6 |
TGGTATC | 18395 | 0.0 | 27.22714 | 2 |
GTACATG | 125330 | 0.0 | 26.502148 | 1 |
TACATGG | 123810 | 0.0 | 25.930096 | 2 |
ACGCAGA | 138085 | 0.0 | 25.755266 | 7 |
CGCAGAG | 139975 | 0.0 | 25.344442 | 8 |
ACATGGG | 128210 | 0.0 | 23.97303 | 3 |
GCAGAGT | 148580 | 0.0 | 23.401983 | 9 |
CATGGGT | 34625 | 0.0 | 22.916073 | 4 |
CATGGGG | 69325 | 0.0 | 20.120163 | 4 |
CAGAGTA | 140495 | 0.0 | 19.871675 | 10-11 |
AGAGTAC | 133485 | 0.0 | 19.40219 | 10-11 |
GAGTACA | 95065 | 0.0 | 19.282526 | 1 |