Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR840960.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 6506057 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 24-50 |
| %GC | 52 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 19851 | 0.3051156791279265 | No Hit |
| ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA | 18755 | 0.28826983839828024 | No Hit |
| TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 12004 | 0.1845049928090086 | No Hit |
| TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 7971 | 0.12251660260584868 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TACGGTA | 15 | 1.7975353E-5 | 234.89073 | 44 |
| CTATCAT | 7815 | 0.0 | 175.07849 | 44 |
| ACCGTAA | 45 | 0.0 | 117.60919 | 43 |
| CGTGTGC | 575 | 0.0 | 106.21145 | 44 |
| TAATATC | 20 | 8.888249E-4 | 88.20689 | 43 |
| ACTTCTA | 2195 | 0.0 | 87.74961 | 44 |
| CCTATCA | 7980 | 0.0 | 85.9225 | 43 |
| CGCGTAA | 235 | 0.0 | 84.960464 | 44 |
| CGTTCGA | 535 | 0.0 | 82.43635 | 43 |
| GTGTTAG | 1460 | 0.0 | 76.52653 | 43 |
| TCTACGA | 295 | 0.0 | 75.64277 | 44 |
| TAAGCCA | 2475 | 0.0 | 71.17901 | 44 |
| TACGCTA | 745 | 0.0 | 68.22383 | 42 |
| TCCTATA | 190 | 0.0 | 67.99468 | 44 |
| CCCTATC | 10720 | 0.0 | 65.75821 | 42 |
| GGTGCGT | 665 | 0.0 | 65.345535 | 44 |
| TGAACAC | 1220 | 0.0 | 65.070656 | 43 |
| GAACACA | 2420 | 0.0 | 61.634544 | 44 |
| ACATTGG | 845 | 0.0 | 61.154984 | 44 |
| TCGTGCG | 1555 | 0.0 | 60.12817 | 43 |