FastQCFastQC Report
Tue 24 May 2016
ERR841113.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841113.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19392512
Sequences flagged as poor quality0
Sequence length24-50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTTTCCG619390.31939647633065793No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC514860.26549422787517163No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA467080.24085585199070653No Hit
CAGTTGACACAAAATAAACTACGAAAGTGGCTTTAACATATCTGAATA396980.20470787899989437No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAG353600.18233842010771995No Hit
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTTTC340400.17553166913084803No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA284310.1466081341086704No Hit
ATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACAT267110.1377387313206252No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT242820.12521327819727532No Hit
TAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAACC237640.12254214410180589No Hit
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTTTCC224450.11574054975446192No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCC217810.11231654774791426No Hit
CAGTTGACACAAAATAAACTACGAAAGTGGCTTTAACATATCTGAA212420.10953712443235822No Hit
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTT196180.10116275807899461No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAGCGT1550.0113.3349544
CTATCAT188700.099.41505444
GAATACA146200.094.2914444
AACGACA36300.088.09434543
CCGATAC1200.087.2292543
GCGTTAC1900.085.39284543
ACGAACA9050.072.535744
GACGAAT2650.069.7792244
TGCACCG6250.069.52801544
GCGTTAG1152.8740033E-1064.3182444
CGGGCAC8850.063.86955643
TGAATAC124900.063.7772343
CCTATCA176250.060.34037443
CCCTATC182900.060.30461542
GTCTACG2300.060.2983544
CCTTAGC155400.058.7366143
CGTCGTT458.540004E-658.15283243
TCGCATT1750.058.11612344
ACTTCTA102500.057.27852644
CTAACGA1950.056.89690844