FastQCFastQC Report
Sat 18 Mar 2023
SRR6792041_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6792041_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98297000
Sequences flagged as poor quality0
Sequence length151
%GC42

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG1126705311.46225520616092No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA12613141.283166322471693No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11210411.1404630863607232No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGACTAATCCTAGCCCTAGCCC3506780.35675351231471963No Hit
AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA3139610.3194003886181674No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGCTGGTGAGATGGCTCAG2987690.3039451865265471No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA2555610.25998860595949014No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTCAGGCAGCGAGAG1486640.15123961056797255No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGGCTGGTGAGATGGCTCA1287470.13097754763624525No Hit
AGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTA1284360.13066115954708687No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGAGCACACGTCTGAACTC1225180.12464062992766818Illumina Multiplexing PCR Primer 2.01 (100% over 22bp)
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCTGGTGAGATGGCTCAGT1034260.10521786015849925No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAAAAAAAAAAAAAAAAAA992340.1009532335676572No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGTACC648100.085.438866145
CGTGGGG820500.066.43536145
AAGCAGT81084500.057.3104171
GTATCAA81930250.056.781969
AGTGGTA82063800.056.490255
GGTATCA83234400.055.7131928
AGCAGTG83236400.055.6784932
GTGGTAT83436050.055.5358856
TGGTATC83582150.055.4218987
CAGTGGT83706350.055.384294
GCAGTGG85124950.054.387513
TGACTGG829250.039.776672
CAGGGGG889650.039.65252145
GTGACTG844550.039.2291071
GACTGGA880250.037.5176473
AGTTCAG938950.035.3468869
CCCTCTT1764100.029.679193145
GGAGTTC1115800.029.4001857
TGCGGAT192650.028.637394145
CAGGGGA1877350.028.321318145