Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR1248469_1.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 86457361 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 100 |
| %GC | 25 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 125878 | 0.1455954687305341 | No Hit |
| TTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 89102 | 0.10305889396739741 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GGCAACC | 1440 | 0.0 | 42.78773 | 1 |
| GGCATCC | 1100 | 0.0 | 39.764977 | 1 |
| GTGCACC | 650 | 0.0 | 39.07427 | 1 |
| GGTAACC | 1115 | 0.0 | 38.386368 | 1 |
| GGACACC | 1295 | 0.0 | 38.135548 | 1 |
| GGTTACC | 1080 | 0.0 | 37.888374 | 1 |
| GGATACC | 925 | 0.0 | 37.627075 | 1 |
| GGCCACC | 1950 | 0.0 | 37.38587 | 1 |
| GACAGCC | 1045 | 0.0 | 37.357025 | 1 |
| CCCCTGG | 2050 | 0.0 | 36.90972 | 6 |
| GGCTACC | 1240 | 0.0 | 36.792603 | 1 |
| GGTCACC | 990 | 0.0 | 35.156612 | 1 |
| CCCAGTG | 780 | 0.0 | 34.94884 | 7 |
| GGCCTCC | 2195 | 0.0 | 34.92718 | 1 |
| GGCGACC | 285 | 0.0 | 34.656517 | 1 |
| GGACTTC | 975 | 0.0 | 34.250282 | 1 |
| GGTATCC | 825 | 0.0 | 34.20643 | 1 |
| GGCCTTC | 1375 | 0.0 | 33.86437 | 1 |
| GGCTTCC | 1310 | 0.0 | 33.749474 | 1 |
| CCCTTGG | 1680 | 0.0 | 33.57155 | 7 |