FastQCFastQC Report
Thu 26 May 2016
SRR1248456_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1248456_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences272716550
Sequences flagged as poor quality0
Sequence length20-99
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGCCGG5450.049.1200871
GGGTACC9750.047.0024381
TAGCCAC110550.046.871731
GGCCGGT12150.046.3016172
GGCCATA37450.046.2823261
GTCGGTC52500.046.2229843
GCCGGTC24500.045.9144173
GGCCATT21400.045.797691
GGACCAC25700.045.197091
AAGCCAT327100.043.9310041
GGCCAAA73950.042.8273161
TGACGGG9900.042.623721
GGCCCAT21650.041.4964451
TGGCAAC24850.040.900181
TGCCGTC40100.040.7170685
GGGCAAG11350.040.376541
GGACAAT40200.039.843021
AGCCATA344800.039.473422
GGGTCGG21400.039.43691
TGGCCAC14500.038.176441