FastQCFastQC Report
Thu 26 May 2016
SRR1248452_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1248452_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13921551
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN143730.10324280678208914No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGCTGA65900.047.0701529
GCTTGCT15450.044.7163737
GCCTGCT13600.042.159817
CTTGCTG42950.041.3633548
CCTGCTG39350.039.8922778
CTGCTGA57650.037.2566689
TACCCGA77050.035.6820646
CTACCCG77000.033.329685
ACCCGAC87700.032.8502467
GACTGCC6600.030.624533
CCCGACG100050.030.5809528
ACTGGCC5100.030.415063
GTTGCTG20750.030.3510538
TCGCGAC7050.029.9978546
ACTTGCT13300.029.3294687
TATGGCC5800.029.1755733
TACGCCG8500.028.755024
TGCTTGC9000.028.7201676
TACGCGC8000.028.2032572
ACATGCC11200.028.1191163