Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR1248455_2.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 15544734 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 100 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 15556 | 0.10007247470429537 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TTGCTGA | 8475 | 0.0 | 47.636833 | 9 |
| GCTTGCT | 1780 | 0.0 | 45.149788 | 7 |
| CCTGCTG | 4820 | 0.0 | 41.440434 | 8 |
| GCCTGCT | 1700 | 0.0 | 39.810093 | 7 |
| CTTGCTG | 5480 | 0.0 | 39.36539 | 8 |
| CTGCTGA | 7285 | 0.0 | 37.99926 | 9 |
| GTTGCTG | 2265 | 0.0 | 36.312176 | 8 |
| TACCCGA | 9635 | 0.0 | 36.19302 | 6 |
| ACCCGAC | 10640 | 0.0 | 33.52585 | 7 |
| ACTTGCT | 1510 | 0.0 | 32.991993 | 7 |
| CTACCCG | 9770 | 0.0 | 32.473625 | 5 |
| CATGCTG | 940 | 0.0 | 31.998863 | 8 |
| CCCGACG | 12360 | 0.0 | 30.115433 | 8 |
| ACTCGCC | 1415 | 0.0 | 29.896685 | 3 |
| TCGCGAC | 865 | 0.0 | 29.882656 | 6 |
| ATTGCTG | 1475 | 0.0 | 28.99558 | 8 |
| GCTGAAC | 16730 | 0.0 | 28.809341 | 10-11 |
| TGAACCG | 15285 | 0.0 | 28.797132 | 12-13 |
| GACACGC | 1090 | 0.0 | 28.030499 | 2 |
| ACTTGCC | 1030 | 0.0 | 27.837458 | 3 |