FastQCFastQC Report
Thu 26 May 2016
SRR1248455_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1248455_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15544734
Sequences flagged as poor quality0
Sequence length100
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN155560.10007247470429537No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGCTGA84750.047.6368339
GCTTGCT17800.045.1497887
CCTGCTG48200.041.4404348
GCCTGCT17000.039.8100937
CTTGCTG54800.039.365398
CTGCTGA72850.037.999269
GTTGCTG22650.036.3121768
TACCCGA96350.036.193026
ACCCGAC106400.033.525857
ACTTGCT15100.032.9919937
CTACCCG97700.032.4736255
CATGCTG9400.031.9988638
CCCGACG123600.030.1154338
ACTCGCC14150.029.8966853
TCGCGAC8650.029.8826566
ATTGCTG14750.028.995588
GCTGAAC167300.028.80934110-11
TGAACCG152850.028.79713212-13
GACACGC10900.028.0304992
ACTTGCC10300.027.8374583