Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR1248497_2.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 106210222 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 100 |
| %GC | 23 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 3015161 | 2.838861404507751 | No Hit |
| CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 450664 | 0.4243132078191118 | No Hit |
| TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 399113 | 0.37577644833469986 | No Hit |
| GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 284845 | 0.26818981698390576 | No Hit |
| ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 145535 | 0.13702541738402543 | No Hit |
| AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 129084 | 0.1215363244415401 | No Hit |
| AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 108210 | 0.1018828489031875 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCTTGCT | 10605 | 0.0 | 51.71424 | 7 |
| CGCTGAA | 2520 | 0.0 | 50.913864 | 9 |
| TGCCTGC | 3400 | 0.0 | 48.928307 | 6 |
| GCCTGCT | 8425 | 0.0 | 48.863457 | 7 |
| CGCTTGC | 6360 | 0.0 | 48.692734 | 6 |
| TGCTTGC | 3525 | 0.0 | 48.259777 | 6 |
| GCCTTGC | 3435 | 0.0 | 45.693623 | 6 |
| GGCTTGC | 1650 | 0.0 | 44.71483 | 6 |
| CGCCTGC | 4530 | 0.0 | 44.39984 | 6 |
| CTGCTGA | 60255 | 0.0 | 44.045208 | 9 |
| CCCTGCT | 24715 | 0.0 | 43.790844 | 7 |
| GGGCCAT | 1740 | 0.0 | 43.7538 | 7 |
| CCTGCTG | 46375 | 0.0 | 43.739265 | 8 |
| CCGTTGC | 2225 | 0.0 | 43.719597 | 6 |
| GCCCTGC | 3300 | 0.0 | 43.290787 | 6 |
| GTCACTG | 600 | 0.0 | 43.127445 | 1 |
| GGCCATC | 6680 | 0.0 | 42.77609 | 8 |
| TCGCTGA | 945 | 0.0 | 42.770134 | 8 |
| TGGCCAT | 3570 | 0.0 | 42.65076 | 7 |
| GGCACTT | 775 | 0.0 | 42.495083 | 1 |