FastQCFastQC Report
Thu 26 May 2016
SRR1248446_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1248446_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42830232
Sequences flagged as poor quality0
Sequence length100
%GC28

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT785340.18336113612459534No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT528130.12330776074245874No Hit
TTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT497650.1161912921695124No Hit
CTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT495790.11575701948100584No Hit
TTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT493160.11514296723865516No Hit
CCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT491140.11467133775973942No Hit
CTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT490570.11453825419390677No Hit
CCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT473860.11063680439554939No Hit
CTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT458210.10698284333365274No Hit
TTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT446810.10432117201699957No Hit
CCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT446390.10422311044217551No Hit
CTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT440300.10280121760722659No Hit
CATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT436210.10184628465239227No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT434200.1013769899728771No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCTTTT93350.052.7707671
GCTTTCT84800.046.0075041
TGCCCTA148550.043.4801456
GCTTTTC95600.040.5149961
TGCTCTA142200.039.868016
GCCCTAC382750.038.7586177
GACTTTT106000.038.0921
GATTTCT116800.037.225911
GCTGCGT20050.036.1076245
CCCCTAC1020400.036.0324557
GCCAATG11500.035.9662172
TTTTGAC68550.034.899423
GCCGCGT18850.034.665395
CGCCCTA149550.033.8537036
TTGCCCT68900.032.8184785
TTTGACG41650.032.5000764
GCCCCTA119500.031.7848636
CCCCCTA645650.031.686096
CCTTTTG30050.031.1282771
CCGCGTG15650.030.9385386