Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR1248495_2.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 27893745 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 100 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 869471 | 3.117082342295737 | No Hit |
| TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 190774 | 0.6839311107203425 | No Hit |
| GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 164057 | 0.5881497805332343 | No Hit |
| CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 148149 | 0.5311190734696972 | No Hit |
| AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 71868 | 0.25764916112913483 | No Hit |
| AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 58472 | 0.2096240572931315 | No Hit |
| ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 52508 | 0.18824291969400309 | No Hit |
| AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 51622 | 0.18506658033906884 | No Hit |
| ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 44046 | 0.15790636933118876 | No Hit |
| AAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 40514 | 0.1452440323090356 | No Hit |
| CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 35963 | 0.12892854652539484 | No Hit |
| AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 30370 | 0.108877456218231 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TTGCTGA | 15365 | 0.0 | 45.143616 | 9 |
| GCTTGCT | 3180 | 0.0 | 41.67319 | 7 |
| TACCCGA | 21685 | 0.0 | 41.0009 | 6 |
| CTACCCG | 21805 | 0.0 | 38.98642 | 5 |
| ACCCGAC | 23485 | 0.0 | 38.759113 | 7 |
| CTGCTGA | 14150 | 0.0 | 38.126595 | 9 |
| CCTGCTG | 10055 | 0.0 | 36.734856 | 8 |
| CTTGCTG | 10190 | 0.0 | 36.66324 | 8 |
| GTTGCTG | 4000 | 0.0 | 36.419968 | 8 |
| CCCGACG | 26845 | 0.0 | 35.203556 | 8 |
| GCCTGCT | 2985 | 0.0 | 32.27337 | 7 |
| ATTGCTG | 2685 | 0.0 | 30.80394 | 8 |
| CGTACAC | 9585 | 0.0 | 30.54434 | 7 |
| TCGCGAC | 1665 | 0.0 | 30.48184 | 6 |
| GTACACG | 13180 | 0.0 | 30.164272 | 8 |
| ACTTGCT | 2450 | 0.0 | 30.113995 | 7 |
| CCCTGCA | 13855 | 0.0 | 29.54218 | 5 |
| CTCCACG | 32430 | 0.0 | 29.372543 | 7 |
| TTTGCTG | 4230 | 0.0 | 29.107092 | 8 |
| CTGCACG | 22280 | 0.0 | 29.001623 | 7 |