Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR1248494_2.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 21326695 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 100 |
| %GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 825203 | 3.8693430932453436 | No Hit |
| TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 181716 | 0.8520588867614041 | No Hit |
| GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 155247 | 0.7279468290797051 | No Hit |
| CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 143183 | 0.6713792268328497 | No Hit |
| AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 65411 | 0.30670950187077745 | No Hit |
| AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 55539 | 0.2604200979101544 | No Hit |
| AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 47613 | 0.22325540830400586 | No Hit |
| ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 46801 | 0.2194479735373906 | No Hit |
| ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 43172 | 0.20243174106442655 | No Hit |
| AAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 38226 | 0.17924014949339315 | No Hit |
| CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 34419 | 0.16138928230557992 | No Hit |
| AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 28788 | 0.13498575377009894 | No Hit |
| CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 28452 | 0.13341026352184435 | No Hit |
| TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 23163 | 0.10861035898905105 | No Hit |
| TGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 22986 | 0.10778041323327409 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TTGCTGA | 10420 | 0.0 | 46.994335 | 9 |
| GCTTGCT | 2135 | 0.0 | 43.14153 | 7 |
| TACCCGA | 15760 | 0.0 | 40.641705 | 6 |
| CTGCTGA | 9670 | 0.0 | 39.31584 | 9 |
| CTACCCG | 15695 | 0.0 | 38.8935 | 5 |
| CTTGCTG | 6780 | 0.0 | 38.46809 | 8 |
| ACCCGAC | 17150 | 0.0 | 38.362003 | 7 |
| GTTGCTG | 2830 | 0.0 | 38.192562 | 8 |
| GCCTGCT | 2090 | 0.0 | 36.650394 | 7 |
| CCTGCTG | 6700 | 0.0 | 36.47253 | 8 |
| CCCGACG | 19070 | 0.0 | 35.87964 | 8 |
| ACTGCTG | 1615 | 0.0 | 35.208717 | 8 |
| TCGCGAC | 1125 | 0.0 | 32.164032 | 6 |
| ATTGCTG | 1860 | 0.0 | 31.328968 | 8 |
| ACTTGCT | 1665 | 0.0 | 30.48224 | 7 |
| GCTGCTG | 1955 | 0.0 | 30.287342 | 8 |
| TGCTTGC | 1210 | 0.0 | 29.12783 | 6 |
| CCTCACG | 7015 | 0.0 | 28.939253 | 4 |
| TGCCCGA | 2020 | 0.0 | 28.846924 | 5 |
| CTCCACG | 22670 | 0.0 | 28.254112 | 7 |