Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR1248469_2.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 86457361 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 100 |
| %GC | 25 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 966968 | 1.1184333974755487 | No Hit |
| CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 150126 | 0.17364166366354855 | No Hit |
| TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 131449 | 0.1520391074624635 | No Hit |
| GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 89662 | 0.10370661209518066 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCCTGCT | 7585 | 0.0 | 51.239323 | 7 |
| GCTTGCT | 10860 | 0.0 | 51.192745 | 7 |
| CCGTTTG | 4425 | 0.0 | 48.69344 | 1 |
| CGCTTGC | 6460 | 0.0 | 47.429512 | 6 |
| TGCTTGC | 3770 | 0.0 | 47.367 | 6 |
| TGCCTGC | 3510 | 0.0 | 47.12693 | 6 |
| CGTTGCT | 4145 | 0.0 | 45.804733 | 7 |
| CGCTGAA | 3065 | 0.0 | 45.08081 | 9 |
| CTGCTGA | 57660 | 0.0 | 44.853855 | 9 |
| CCGTTGC | 2600 | 0.0 | 44.824135 | 6 |
| CCTGCTG | 42535 | 0.0 | 44.793213 | 8 |
| CGCCTGC | 4340 | 0.0 | 44.394352 | 6 |
| GCTGCTG | 8180 | 0.0 | 43.89499 | 8 |
| CCCTGCT | 23290 | 0.0 | 43.80703 | 7 |
| GCCTTGC | 3765 | 0.0 | 43.56062 | 6 |
| CCGTGCT | 4975 | 0.0 | 43.54731 | 7 |
| GGCCATC | 5175 | 0.0 | 42.865368 | 8 |
| CGTGCTG | 6465 | 0.0 | 41.581715 | 8 |
| CCGCTTG | 3705 | 0.0 | 41.506996 | 5 |
| CCCGTGC | 3135 | 0.0 | 41.371872 | 6 |