Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR1248493_2.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 22770588 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 100 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 703367 | 3.0889276991880927 | No Hit |
| TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 156105 | 0.6855554191222466 | No Hit |
| GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 136090 | 0.5976569423679353 | No Hit |
| CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 120970 | 0.5312554950271816 | No Hit |
| AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 57862 | 0.2541085017216068 | No Hit |
| AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 48342 | 0.21230018302557668 | No Hit |
| ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 42061 | 0.18471635427245006 | No Hit |
| AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 41543 | 0.18244148987281314 | No Hit |
| ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 36833 | 0.1617569120305545 | No Hit |
| AAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 34155 | 0.14999612658223846 | No Hit |
| CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 30038 | 0.13191578539825144 | No Hit |
| AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 27211 | 0.11950064706278117 | No Hit |
| CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 23035 | 0.10116119970200155 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCTCAC | 1985 | 0.0 | 47.111744 | 3 |
| TTGCTGA | 9760 | 0.0 | 44.3944 | 9 |
| CAGCTCA | 2175 | 0.0 | 43.2123 | 2 |
| TACCCGA | 16785 | 0.0 | 39.139973 | 6 |
| CCAGCTC | 2550 | 0.0 | 38.331852 | 1 |
| GCTTGCT | 2265 | 0.0 | 38.175716 | 7 |
| CTACCCG | 16795 | 0.0 | 37.66177 | 5 |
| ACCCGAC | 18335 | 0.0 | 36.80536 | 7 |
| CTGCTGA | 10220 | 0.0 | 36.004597 | 9 |
| CTTGCTG | 6390 | 0.0 | 35.88876 | 8 |
| CCTGCTG | 7470 | 0.0 | 35.795727 | 8 |
| CCCGACG | 19525 | 0.0 | 35.30844 | 8 |
| GTTGCTG | 2700 | 0.0 | 34.984188 | 8 |
| GACACGC | 1740 | 0.0 | 32.679302 | 2 |
| GCCTGCT | 2295 | 0.0 | 30.714691 | 7 |
| CTGCACG | 16060 | 0.0 | 29.670853 | 7 |
| GTACACG | 8985 | 0.0 | 29.027815 | 8 |
| TCGCGAC | 1250 | 0.0 | 28.94779 | 6 |
| CCCTGCA | 10735 | 0.0 | 28.498014 | 5 |
| CCTGCAC | 12930 | 0.0 | 28.348545 | 6 |