FastQCFastQC Report
Thu 26 May 2016
SRR1248494_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1248494_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21326695
Sequences flagged as poor quality0
Sequence length100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8252033.8693430932453436No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1817160.8520588867614041No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1552470.7279468290797051No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1431830.6713792268328497No Hit
AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA654110.30670950187077745No Hit
AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA555390.2604200979101544No Hit
AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA476130.22325540830400586No Hit
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA468010.2194479735373906No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA431720.20243174106442655No Hit
AAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA382260.17924014949339315No Hit
CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA344190.16138928230557992No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA287880.13498575377009894No Hit
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA284520.13341026352184435No Hit
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA231630.10861035898905105No Hit
TGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA229860.10778041323327409No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGCTGA104200.046.9943359
GCTTGCT21350.043.141537
TACCCGA157600.040.6417056
CTGCTGA96700.039.315849
CTACCCG156950.038.89355
CTTGCTG67800.038.468098
ACCCGAC171500.038.3620037
GTTGCTG28300.038.1925628
GCCTGCT20900.036.6503947
CCTGCTG67000.036.472538
CCCGACG190700.035.879648
ACTGCTG16150.035.2087178
TCGCGAC11250.032.1640326
ATTGCTG18600.031.3289688
ACTTGCT16650.030.482247
GCTGCTG19550.030.2873428
TGCTTGC12100.029.127836
CCTCACG70150.028.9392534
TGCCCGA20200.028.8469245
CTCCACG226700.028.2541127