Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR1248490_2.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 16040768 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 100 |
| %GC | 32 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 297149 | 1.8524611789161218 | No Hit |
| TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 67006 | 0.41772314143562206 | No Hit |
| GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 56278 | 0.35084355063298717 | No Hit |
| CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 53528 | 0.33369973308011186 | No Hit |
| AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 26890 | 0.16763536508975133 | No Hit |
| AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 21739 | 0.1355234362843475 | No Hit |
| AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 18434 | 0.11491968464352828 | No Hit |
| ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 18362 | 0.11447082832941664 | No Hit |
| ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 16398 | 0.10222702553892682 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TTGCTGA | 6235 | 0.0 | 46.20319 | 9 |
| GCTTGCT | 1300 | 0.0 | 45.185284 | 7 |
| CTTGCTG | 3890 | 0.0 | 41.43559 | 8 |
| GCCTGCT | 900 | 0.0 | 39.682716 | 7 |
| CTGCTGA | 4485 | 0.0 | 39.607487 | 9 |
| CCTGCTG | 3165 | 0.0 | 36.97044 | 8 |
| ACTTGCT | 1100 | 0.0 | 34.176506 | 7 |
| CAGTGCC | 365 | 0.0 | 33.47477 | 3 |
| CCCGACG | 8025 | 0.0 | 33.20221 | 8 |
| CCTGGCC | 685 | 0.0 | 31.557627 | 3 |
| TGCCAAA | 2245 | 0.0 | 31.398138 | 6 |
| TGCTTGC | 750 | 0.0 | 31.328365 | 6 |
| GGCTTGC | 330 | 0.0 | 31.328363 | 6 |
| CATTGCC | 665 | 0.0 | 31.093395 | 3 |
| GTTGCTG | 1825 | 0.0 | 30.89921 | 8 |
| CATGCTG | 740 | 0.0 | 29.846617 | 8 |
| GTGCTCC | 505 | 0.0 | 29.778011 | 3 |
| TCGCGAC | 715 | 0.0 | 29.57573 | 6 |
| TGACGAC | 890 | 0.0 | 29.568344 | 6 |
| ACTTGCC | 1005 | 0.0 | 29.458565 | 3 |