FastQCFastQC Report
Thu 26 May 2016
SRR1248447_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1248447_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11085152
Sequences flagged as poor quality0
Sequence length100
%GC26

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT168980.15243814428525654No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT117450.10595253903600058No Hit
CCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT114020.10285830992664782No Hit
CTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT112080.1011082211592588No Hit
CTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT111450.1005398933636634No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTAGGC4800.070.505011
GCTTTCT18000.056.926271
AGGCATA6600.050.5616954
GCTTTTC19750.048.7882841
GGCTGCC601.6056183E-647.003341
GCCTTTT20700.046.776271
GGCTCTA5850.044.99796
GGCATAT7550.044.2076035
GCATATC7550.043.5824056
AGGACCC1750.042.972742
GCCGCGT2200.042.7359055
CCGCGCT2250.041.7788623
CTGCCGT1750.040.2938545
CTAGCTT4900.040.2885781
GCCCTAC33600.040.2884037
CCGGTCC1305.456968E-1239.772061
TGCTCTA13150.039.3212246
CCCGTGA608.821572E-539.1722836
GTGTCCC1209.822543E-1139.1694531
TTAGGCA8500.038.707062