Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR1248447_1.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 11085152 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 100 |
| %GC | 26 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16898 | 0.15243814428525654 | No Hit |
| CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11745 | 0.10595253903600058 | No Hit |
| CCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11402 | 0.10285830992664782 | No Hit |
| CTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11208 | 0.1011082211592588 | No Hit |
| CTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11145 | 0.1005398933636634 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTTAGGC | 480 | 0.0 | 70.50501 | 1 |
| GCTTTCT | 1800 | 0.0 | 56.92627 | 1 |
| AGGCATA | 660 | 0.0 | 50.561695 | 4 |
| GCTTTTC | 1975 | 0.0 | 48.788284 | 1 |
| GGCTGCC | 60 | 1.6056183E-6 | 47.00334 | 1 |
| GCCTTTT | 2070 | 0.0 | 46.77627 | 1 |
| GGCTCTA | 585 | 0.0 | 44.9979 | 6 |
| GGCATAT | 755 | 0.0 | 44.207603 | 5 |
| GCATATC | 755 | 0.0 | 43.582405 | 6 |
| AGGACCC | 175 | 0.0 | 42.97274 | 2 |
| GCCGCGT | 220 | 0.0 | 42.735905 | 5 |
| CCGCGCT | 225 | 0.0 | 41.778862 | 3 |
| CTGCCGT | 175 | 0.0 | 40.293854 | 5 |
| CTAGCTT | 490 | 0.0 | 40.288578 | 1 |
| GCCCTAC | 3360 | 0.0 | 40.288403 | 7 |
| CCGGTCC | 130 | 5.456968E-12 | 39.77206 | 1 |
| TGCTCTA | 1315 | 0.0 | 39.321224 | 6 |
| CCCGTGA | 60 | 8.821572E-5 | 39.172283 | 6 |
| GTGTCCC | 120 | 9.822543E-11 | 39.169453 | 1 |
| TTAGGCA | 850 | 0.0 | 38.70706 | 2 |