Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR1248452_2.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 13921551 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 100 |
| %GC | 37 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 14373 | 0.10324280678208914 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TTGCTGA | 6590 | 0.0 | 47.070152 | 9 |
| GCTTGCT | 1545 | 0.0 | 44.716373 | 7 |
| GCCTGCT | 1360 | 0.0 | 42.15981 | 7 |
| CTTGCTG | 4295 | 0.0 | 41.363354 | 8 |
| CCTGCTG | 3935 | 0.0 | 39.892277 | 8 |
| CTGCTGA | 5765 | 0.0 | 37.256668 | 9 |
| TACCCGA | 7705 | 0.0 | 35.682064 | 6 |
| CTACCCG | 7700 | 0.0 | 33.32968 | 5 |
| ACCCGAC | 8770 | 0.0 | 32.850246 | 7 |
| GACTGCC | 660 | 0.0 | 30.62453 | 3 |
| CCCGACG | 10005 | 0.0 | 30.580952 | 8 |
| ACTGGCC | 510 | 0.0 | 30.41506 | 3 |
| GTTGCTG | 2075 | 0.0 | 30.351053 | 8 |
| TCGCGAC | 705 | 0.0 | 29.997854 | 6 |
| ACTTGCT | 1330 | 0.0 | 29.329468 | 7 |
| TATGGCC | 580 | 0.0 | 29.175573 | 3 |
| TACGCCG | 850 | 0.0 | 28.75502 | 4 |
| TGCTTGC | 900 | 0.0 | 28.720167 | 6 |
| TACGCGC | 800 | 0.0 | 28.203257 | 2 |
| ACATGCC | 1120 | 0.0 | 28.119116 | 3 |