Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR1248496_2.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 23375132 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 100 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 659631 | 2.82193486650685 | No Hit |
| TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 144943 | 0.620073503756043 | No Hit |
| GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 123633 | 0.5289082431705626 | No Hit |
| CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 113511 | 0.4856058139051364 | No Hit |
| AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 54064 | 0.2312885334722388 | No Hit |
| AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 42311 | 0.18100860350221765 | No Hit |
| ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 39112 | 0.16732311928762583 | No Hit |
| AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 37992 | 0.16253170249477092 | No Hit |
| ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 33800 | 0.1445981139272283 | No Hit |
| AAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 28991 | 0.12402496807290757 | No Hit |
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 28457 | 0.12174048899488568 | No Hit |
| CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 27500 | 0.11764639446741948 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TTGCTGA | 11615 | 0.0 | 45.03258 | 9 |
| TACCCGA | 17755 | 0.0 | 40.416447 | 6 |
| CTACCCG | 17425 | 0.0 | 38.32305 | 5 |
| ACCCGAC | 19270 | 0.0 | 38.019547 | 7 |
| GCTTGCT | 2235 | 0.0 | 37.216732 | 7 |
| CTGCTGA | 10975 | 0.0 | 36.910812 | 9 |
| GCCTGCT | 2330 | 0.0 | 36.909462 | 7 |
| CTTGCTG | 7405 | 0.0 | 36.364193 | 8 |
| CCTGCTG | 7780 | 0.0 | 35.8799 | 8 |
| CCCGACG | 21690 | 0.0 | 35.684402 | 8 |
| GTTGCTG | 3535 | 0.0 | 32.03849 | 8 |
| ACTGGCC | 1420 | 0.0 | 30.115753 | 3 |
| ATTGCTG | 2205 | 0.0 | 29.62447 | 8 |
| GTACACG | 9770 | 0.0 | 29.437523 | 8 |
| CTGCACG | 17850 | 0.0 | 29.38113 | 7 |
| ACTGCTG | 1645 | 0.0 | 28.853592 | 8 |
| CCTGCAC | 14450 | 0.0 | 28.553965 | 6 |
| CGTACAC | 7575 | 0.0 | 28.53762 | 7 |
| TCGACAC | 3255 | 0.0 | 28.4416 | 5 |
| CCCTGCA | 11700 | 0.0 | 28.356829 | 5 |