FastQCFastQC Report
Thu 26 May 2016
SRR1248497_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1248497_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106210222
Sequences flagged as poor quality0
Sequence length100
%GC23

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30151612.838861404507751No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4506640.4243132078191118No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3991130.37577644833469986No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2848450.26818981698390576No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1455350.13702541738402543No Hit
AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1290840.1215363244415401No Hit
AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1082100.1018828489031875No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCTTGCT106050.051.714247
CGCTGAA25200.050.9138649
TGCCTGC34000.048.9283076
GCCTGCT84250.048.8634577
CGCTTGC63600.048.6927346
TGCTTGC35250.048.2597776
GCCTTGC34350.045.6936236
GGCTTGC16500.044.714836
CGCCTGC45300.044.399846
CTGCTGA602550.044.0452089
CCCTGCT247150.043.7908447
GGGCCAT17400.043.75387
CCTGCTG463750.043.7392658
CCGTTGC22250.043.7195976
GCCCTGC33000.043.2907876
GTCACTG6000.043.1274451
GGCCATC66800.042.776098
TCGCTGA9450.042.7701348
TGGCCAT35700.042.650767
GGCACTT7750.042.4950831