FastQCFastQC Report
Thu 26 May 2016
SRR1248469_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1248469_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86457361
Sequences flagged as poor quality0
Sequence length100
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1258780.1455954687305341No Hit
TTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT891020.10305889396739741No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCAACC14400.042.787731
GGCATCC11000.039.7649771
GTGCACC6500.039.074271
GGTAACC11150.038.3863681
GGACACC12950.038.1355481
GGTTACC10800.037.8883741
GGATACC9250.037.6270751
GGCCACC19500.037.385871
GACAGCC10450.037.3570251
CCCCTGG20500.036.909726
GGCTACC12400.036.7926031
GGTCACC9900.035.1566121
CCCAGTG7800.034.948847
GGCCTCC21950.034.927181
GGCGACC2850.034.6565171
GGACTTC9750.034.2502821
GGTATCC8250.034.206431
GGCCTTC13750.033.864371
GGCTTCC13100.033.7494741
CCCTTGG16800.033.571557