Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR1248446_1.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 42830232 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 100 |
| %GC | 28 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 78534 | 0.18336113612459534 | No Hit |
| CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 52813 | 0.12330776074245874 | No Hit |
| TTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 49765 | 0.1161912921695124 | No Hit |
| CTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 49579 | 0.11575701948100584 | No Hit |
| TTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 49316 | 0.11514296723865516 | No Hit |
| CCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 49114 | 0.11467133775973942 | No Hit |
| CTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 49057 | 0.11453825419390677 | No Hit |
| CCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 47386 | 0.11063680439554939 | No Hit |
| CTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 45821 | 0.10698284333365274 | No Hit |
| TTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 44681 | 0.10432117201699957 | No Hit |
| CCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 44639 | 0.10422311044217551 | No Hit |
| CTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 44030 | 0.10280121760722659 | No Hit |
| CATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 43621 | 0.10184628465239227 | No Hit |
| GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 43420 | 0.1013769899728771 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCCTTTT | 9335 | 0.0 | 52.770767 | 1 |
| GCTTTCT | 8480 | 0.0 | 46.007504 | 1 |
| TGCCCTA | 14855 | 0.0 | 43.480145 | 6 |
| GCTTTTC | 9560 | 0.0 | 40.514996 | 1 |
| TGCTCTA | 14220 | 0.0 | 39.86801 | 6 |
| GCCCTAC | 38275 | 0.0 | 38.758617 | 7 |
| GACTTTT | 10600 | 0.0 | 38.092 | 1 |
| GATTTCT | 11680 | 0.0 | 37.22591 | 1 |
| GCTGCGT | 2005 | 0.0 | 36.107624 | 5 |
| CCCCTAC | 102040 | 0.0 | 36.032455 | 7 |
| GCCAATG | 1150 | 0.0 | 35.966217 | 2 |
| TTTTGAC | 6855 | 0.0 | 34.89942 | 3 |
| GCCGCGT | 1885 | 0.0 | 34.66539 | 5 |
| CGCCCTA | 14955 | 0.0 | 33.853703 | 6 |
| TTGCCCT | 6890 | 0.0 | 32.818478 | 5 |
| TTTGACG | 4165 | 0.0 | 32.500076 | 4 |
| GCCCCTA | 11950 | 0.0 | 31.784863 | 6 |
| CCCCCTA | 64565 | 0.0 | 31.68609 | 6 |
| CCTTTTG | 3005 | 0.0 | 31.128277 | 1 |
| CCGCGTG | 1565 | 0.0 | 30.938538 | 6 |