Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR1248456_2.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 272716550 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 20-99 |
| %GC | 26 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TGGTGAAGGTGTTAGTGGGAATGTTTGTGATGAGATTTTTAGTTGAAATA | 1325885 | 0.48617694819034635 | No Hit |
| TTGTGATGTTTTTTATTTTTTGGATGTTTTGTTTGTTTGTTAGGTTATGA | 990209 | 0.36309090885756656 | No Hit |
| TGGTGAGTAGGTTAAGGGTTAATAGTGTAATTGAATTATAGTGAAATTAT | 852409 | 0.3125622555726816 | No Hit |
| TTGTTTGTGGGTATTTTTATTATTATTGAGATTATTTGAGATTAATTGAG | 519509 | 0.19049412292726642 | No Hit |
| TGGTAGGAATTGTGATAATTATAGTGGTTGATGTAAAGTAAGTTTGTGTG | 341046 | 0.12505511675034023 | No Hit |
| TGGTTGTGTTTGGATATATGATTGTTATAGTTATTGAGGAATATTTAGAG | 280460 | 0.10283937663482469 | No Hit |
| TTGTTTAGTTGTTTATGTTAGTTTTTAATTAAGGAATAAGTGATTATGTT | 273698 | 0.10035987914924856 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCACGAC | 14995 | 0.0 | 84.923164 | 1 |
| CCCCCGG | 10405 | 0.0 | 82.212944 | 1 |
| CCGCCGG | 5395 | 0.0 | 78.483765 | 1 |
| CACGACG | 171400 | 0.0 | 75.19809 | 2 |
| ACGCGAC | 4830 | 0.0 | 74.00499 | 1 |
| GCGACGC | 4345 | 0.0 | 73.70052 | 3 |
| ACGACGC | 181670 | 0.0 | 73.28981 | 3 |
| CGCGACG | 4465 | 0.0 | 71.41551 | 2 |
| ACACGAC | 188615 | 0.0 | 71.17043 | 1 |
| CGTGTCC | 7495 | 0.0 | 70.501755 | 9 |
| GGGTACC | 8130 | 0.0 | 70.42352 | 1 |
| CCTCGTG | 7665 | 0.0 | 70.298004 | 6 |
| CCCTCGG | 3490 | 0.0 | 69.40185 | 1 |
| GCCGGTC | 19680 | 0.0 | 66.60187 | 3 |
| CGCCGGT | 9885 | 0.0 | 66.57209 | 2 |
| CGCCCGG | 2930 | 0.0 | 66.009705 | 1 |
| CTATGGC | 3935 | 0.0 | 65.19561 | 4 |
| GGTACCT | 8725 | 0.0 | 64.24149 | 2 |
| GGGCCGG | 5065 | 0.0 | 62.720215 | 1 |
| GGACTAT | 13545 | 0.0 | 60.01832 | 1 |