Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR10540260_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 170236334 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 6751610 | 3.9660217307076175 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 2753126 | 1.6172375986433074 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1172420 | 0.6887013908558439 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 913704 | 0.5367267836019072 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 566630 | 0.33284903797329185 | No Hit |
| ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 537909 | 0.3159777865047305 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 478625 | 0.28115325838724886 | Illumina Single End PCR Primer 1 (100% over 22bp) |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 400705 | 0.23538159603460446 | No Hit |
| CCATCCTCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 387618 | 0.2276940479698065 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 202720 | 0.11908151170595581 | Illumina Single End PCR Primer 1 (100% over 21bp) |
| CCTAATCCTATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC | 182581 | 0.107251487217764 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 176371 | 0.10360361731003911 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACTTCGA | 190895 | 0.0 | 130.45094 | 2 |
| ACGTGAT | 200490 | 0.0 | 129.48778 | 2 |
| AACGTGA | 200130 | 0.0 | 129.14386 | 1 |
| AACATCG | 252310 | 0.0 | 127.44428 | 2 |
| GGCTAAC | 123545 | 0.0 | 126.78218 | 2 |
| CGAACTT | 126730 | 0.0 | 126.71821 | 1 |
| ACGCTTA | 159450 | 0.0 | 126.572914 | 2 |
| TCACGCA | 189670 | 0.0 | 125.40858 | 2 |
| AGGTACA | 202950 | 0.0 | 125.31026 | 2 |
| AATCCGT | 140560 | 0.0 | 125.23552 | 1 |
| CAAGCTA | 119700 | 0.0 | 124.8567 | 2 |
| ATAGCGA | 112520 | 0.0 | 124.34061 | 1 |
| AGTTAGC | 84230 | 0.0 | 123.21445 | 2 |
| CTAACGA | 141815 | 0.0 | 122.9252 | 2 |
| AGCAGGA | 309290 | 0.0 | 122.91071 | 1 |
| CCGAAGT | 144020 | 0.0 | 122.80824 | 1 |
| TAGCGAC | 113945 | 0.0 | 122.751045 | 2 |
| AGATGTA | 358255 | 0.0 | 122.16519 | 1 |
| ACGTATC | 225175 | 0.0 | 122.034775 | 1 |
| GATAGAC | 120005 | 0.0 | 121.80056 | 1 |