Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR10540280_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 150681222 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 5564379 | 3.6928151538351606 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 2741543 | 1.819432417398367 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1191759 | 0.7909140795261137 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1146980 | 0.7611963752192028 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 504925 | 0.3350948401520131 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 366677 | 0.24334618151689796 | Illumina Single End PCR Primer 1 (100% over 22bp) |
| CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 259424 | 0.17216743835539108 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 185764 | 0.12328278038520286 | Illumina Single End PCR Primer 1 (100% over 21bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGTTAGC | 129995 | 0.0 | 131.47816 | 2 |
| GGCTAAC | 159865 | 0.0 | 130.14388 | 2 |
| ATAGCGA | 172560 | 0.0 | 129.94144 | 1 |
| AGGCTAA | 162220 | 0.0 | 128.74413 | 1 |
| TAGCGAC | 174145 | 0.0 | 128.63863 | 2 |
| CAAGCTA | 111620 | 0.0 | 127.57713 | 2 |
| CTATGCA | 184675 | 0.0 | 127.24184 | 2 |
| ACGCTTA | 125190 | 0.0 | 126.476555 | 2 |
| CGAACTT | 90165 | 0.0 | 125.80448 | 1 |
| GATAGAC | 148205 | 0.0 | 124.51108 | 1 |
| CAGATTC | 130220 | 0.0 | 123.88585 | 2 |
| ATGCCTA | 88120 | 0.0 | 123.88502 | 1 |
| GAGTCAA | 110470 | 0.0 | 123.443184 | 2 |
| CGAGTAA | 131185 | 0.0 | 123.44108 | 2 |
| CAATGGA | 256645 | 0.0 | 123.18597 | 1 |
| ACGTGAT | 142870 | 0.0 | 122.81491 | 2 |
| CCGAAGT | 85455 | 0.0 | 122.66586 | 1 |
| CTCAATG | 122950 | 0.0 | 122.49361 | 1 |
| ACAAGCT | 117570 | 0.0 | 121.9234 | 1 |
| ATGAATC | 80200 | 0.0 | 121.81364 | 2 |