FastQCFastQC Report
Tue 21 Mar 2023
SRR10540285_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10540285_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176775363
Sequences flagged as poor quality0
Sequence length150
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC48068522.719186609731357No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA31333751.772517927172917No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT17769441.005198897540943No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA17014650.9625012055554371No Hit
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG5342690.30223046409470533No Hit
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG2627830.148653633368582Illumina Single End PCR Primer 1 (100% over 22bp)
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC2258470.1277593190404027No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC2228200.12604697635382595No Hit
CCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA2105610.11911218646458104No Hit
CCATCCTCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG1950370.1103304197429367No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCTTA2235750.0134.023762
GGCTAAC2219950.0132.94752
AGTTAGC1793050.0132.786592
ATAGCGA1608650.0130.809451
AGGCTAA2267250.0130.764981
GATGTAC3914900.0130.496492
CAAGCTA1380400.0129.238372
CTATGCA1727900.0128.979552
CAATGGA3257050.0127.9779361
AACGCTT2351800.0127.822751
CTCAATG1784250.0127.731991
TAGCGAC1639750.0127.4897842
CGAACTT1128250.0126.803371
GAATCTG1488050.0126.492381
CAAGACT1472450.0125.598581
TCAATGA1815300.0125.479842
ACAAGCT1436950.0124.38091
GCTAACT925650.0124.258923
GGCTTCA1792450.0123.7865752
TCACGCA1735350.0123.760952