Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR10540288_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 137987586 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 5156833 | 3.7371716902127705 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 2177750 | 1.5782216814779266 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1283221 | 0.9299539452773672 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1272627 | 0.9222764430417675 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 401592 | 0.291034876137336 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 293086 | 0.2124002662094545 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 278141 | 0.20156958177382708 | Illumina Single End PCR Primer 1 (100% over 22bp) |
| ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 189306 | 0.13719060205894174 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 149676 | 0.10847062720555167 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GATAGAC | 221460 | 0.0 | 138.1633 | 1 |
| ATAGACA | 230690 | 0.0 | 137.00082 | 2 |
| CTATGCA | 169550 | 0.0 | 136.58495 | 2 |
| CAAGCTA | 128710 | 0.0 | 135.44202 | 2 |
| ATGCCTA | 87960 | 0.0 | 134.85222 | 1 |
| CTCAATG | 150655 | 0.0 | 134.82156 | 1 |
| GATGTAC | 302915 | 0.0 | 134.78233 | 2 |
| GAGTCAA | 90585 | 0.0 | 134.30621 | 2 |
| ATGTTGC | 168635 | 0.0 | 134.2051 | 2 |
| AGAGTCA | 91900 | 0.0 | 133.87376 | 1 |
| GAACTTA | 68005 | 0.0 | 133.63014 | 2 |
| ACAAGCT | 131485 | 0.0 | 133.4651 | 1 |
| CGAACTT | 68615 | 0.0 | 133.38196 | 1 |
| AGTCACT | 77850 | 0.0 | 133.34811 | 1 |
| AGTTAGC | 61655 | 0.0 | 133.00638 | 2 |
| GGCTTCA | 98565 | 0.0 | 132.85542 | 2 |
| TAAGGTC | 68700 | 0.0 | 132.57172 | 2 |
| ACGCTTA | 97525 | 0.0 | 132.55946 | 2 |
| ATGAATC | 67125 | 0.0 | 132.55038 | 2 |
| GGCTAAC | 97850 | 0.0 | 132.53859 | 2 |