FastQCFastQC Report
Tue 21 Mar 2023
SRR10540253_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10540253_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142861825
Sequences flagged as poor quality0
Sequence length150
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC28675892.007246512495553No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA17589121.2311980474839936No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT9227980.6459374294007514No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA6976040.48830679574476943No Hit
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG3204730.2243237477891662No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACATCG3710900.0139.03352
AACGTGA3527550.0138.563261
GATAGAC2377150.0138.439481
ACGTGAT3549100.0138.0072
ATAGCGA1232800.0136.611161
ACGCTTA1576700.0135.420822
GGCTAAC2092150.0135.086442
ATAGACA2472700.0134.975252
GTCACTA1909250.0134.182022
TAGCGAC1260900.0133.58972
AGGCTAA2115150.0133.326861
ACGTATC1243550.0133.141951
ACATCGA1179850.0132.895233
CATCAAG1461400.0132.780851
AACCGAG1993750.0132.560131
CAAGCTA1419200.0132.447772
GCGAGTA1282900.0131.882661
AGTTAGC1071100.0131.526822
AGGTACA1598150.0131.484992
AGCTGAA1763900.0131.388032