Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR10540279_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 171705012 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 6189248 | 3.6045820258292753 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 2370285 | 1.3804401935570758 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 2119114 | 1.2341596644831776 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1217023 | 0.7087871144961104 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 467434 | 0.27223084204437786 | Illumina Single End PCR Primer 1 (100% over 22bp) |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 377087 | 0.21961327488798058 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 353403 | 0.20581985108273948 | No Hit |
| CCTAATCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC | 220368 | 0.12834104108737374 | No Hit |
| ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 216692 | 0.12620016007453527 | No Hit |
| CCTAATCCTATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC | 184407 | 0.10739756391036506 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 178856 | 0.10416469380637532 | Illumina Single End PCR Primer 1 (100% over 21bp) |
| CCCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGT | 172904 | 0.1006982836354247 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GGCTAAC | 507310 | 0.0 | 139.46432 | 2 |
| AGGCTAA | 507940 | 0.0 | 139.22636 | 1 |
| GCTAACT | 208000 | 0.0 | 135.1499 | 3 |
| ATGAATC | 152490 | 0.0 | 130.83018 | 2 |
| CCTAATC | 189135 | 0.0 | 130.25 | 1 |
| CAATGGA | 415150 | 0.0 | 129.216 | 1 |
| CTCAATG | 177880 | 0.0 | 128.28293 | 1 |
| CTAATCC | 193060 | 0.0 | 127.42705 | 2 |
| CAAGCTA | 113200 | 0.0 | 127.06381 | 2 |
| CGAACTT | 96485 | 0.0 | 126.97093 | 1 |
| AGTTAGC | 100800 | 0.0 | 126.90798 | 2 |
| ACGCTTA | 147040 | 0.0 | 126.79633 | 2 |
| ATAGCGA | 165360 | 0.0 | 126.74435 | 1 |
| GATAGAC | 187570 | 0.0 | 125.57654 | 1 |
| GCTAACA | 183685 | 0.0 | 125.350784 | 3 |
| GAGTCAA | 137480 | 0.0 | 125.13851 | 2 |
| TAGCGAC | 167080 | 0.0 | 124.90468 | 2 |
| CTATGCA | 174025 | 0.0 | 124.26444 | 2 |
| CATTGGC | 150865 | 0.0 | 124.11134 | 2 |
| TCAATGA | 182065 | 0.0 | 123.7482 | 2 |