FastQCFastQC Report
Tue 21 Mar 2023
SRR10540261_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10540261_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences188615546
Sequences flagged as poor quality0
Sequence length150
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA125793936.669329897123114No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC123478216.546555287653755No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA44367842.3522896675759695No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT15530440.8233913020085841No Hit
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC15388620.8158723035480862No Hit
CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG12624510.6693249982692306Illumina Single End PCR Primer 1 (100% over 22bp)
AGATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA9841640.5217830772019184Illumina Single End PCR Primer 1 (100% over 21bp)
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC9630640.510596300476738No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC8178090.43358515103521744No Hit
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG7308740.3874940403904989No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCTATGTACTCTGCGTTGATA6638840.35197734973553024No Hit
CCATCCTCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG5618920.2979033340125633No Hit
CTGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC4739630.25128522545008036No Hit
CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA4684510.24836287884774885Illumina Single End PCR Primer 1 (100% over 21bp)
AGATGTACTCTGCGTTGATACCACTGCTTCTCATGTACTCTGCGTTGATA4622180.24505827319239107No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCTATGTACTCTGCGTTGATAC4508610.23903703038348706No Hit
CATGTACTCTGCGTTGATACCACTGCTTTCCATGTACTCTGCGTTGATAC4237210.22464797254834976No Hit
ATCATTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC4030820.2137056083383498No Hit
AGATGTACTCTGCGTTGATACCACTGCTTTCCATGTACTCTGCGTTGATA4006530.21241780356747475No Hit
ATCATTCCTATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC3999280.2120334237984816No Hit
CATGTACTCTGCGTTGATACCACTGCTTCTCATGTACTCTGCGTTGATAC3487030.18487500494789544No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC3392070.17984042524257252No Hit
TATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC3372970.17882778336839744No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC2718900.1441503660573132No Hit
AGATGTACTCTGCGTTGATACCACTGCTTACCCATGTACTCTGCGTTGAT2269000.12029761322006831No Hit
CCTAATCCTATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC2061610.10930223111089687No Hit
CCTAATCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC1985810.10528347435369936No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATGTA25486050.0141.322881
GATGTAC26155200.0137.404452
CTCAATG1529450.0129.375461
TCAATGA1586050.0125.160322
CCTAATC1384900.0124.276041
CGAACTT623150.0123.9271241
CTAATCC1417650.0121.533912
CAAGCTA833650.0120.814512
ATAGACA1707350.0120.565842
GATAGAC1670300.0120.2602541
GAACTTA648750.0120.251282
CAATGGA2665200.0118.35681
ACGCTTA955400.0117.605862
TGCCTAA557500.0117.511222
ATCCTCA1582650.0117.453383
AGGCTAA627400.0115.754421
ATGCCTA628500.0114.506051
CTATGCA1675000.0114.360952
GGCTAAC627050.0114.1120152
AAGACTA1312450.0113.877822