FastQCFastQC Report
Tue 21 Mar 2023
SRR10540264_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10540264_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences199013503
Sequences flagged as poor quality0
Sequence length150
%GC35

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC19695150.989638878925718No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT11409360.5732957727998989No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA4400630.22112218184511834No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA4115640.20680204799972793No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGCGA2532850.0140.475561
GATAGAC3653300.0139.790021
TAGCGAC2542500.0139.555012
ACGCTTA3605650.0139.164752
AGTTAGC4360850.0138.933172
CGACACA7092250.0137.911031
TCACGCA4222350.0137.835312
CGCATAC2795900.0137.506641
GAGCTGA4780700.0137.148541
ACGTATC1871400.0136.689821
AACATCG2848750.0135.88662
ATAGACA3793150.0135.835622
AGCTGAA4837600.0135.58332
GACTAGT2947550.0134.987881
AACCGAG3179250.0134.973331
ACCGAGA3165750.0134.189442
AACGTGA2397600.0134.046051
GGCTAAC2739350.0133.871722
AGGACAC4639200.0133.83972
GCGAGTA1738450.0133.71241