Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR10540282_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 141443446 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 5503171 | 3.8907218083473443 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 2340540 | 1.6547532361449961 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1234543 | 0.8728173944517726 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1142311 | 0.807609707133408 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 389385 | 0.2752937735976823 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 349086 | 0.2468025277042529 | Illumina Single End PCR Primer 1 (100% over 22bp) |
| CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 264116 | 0.18672904787684544 | No Hit |
| ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 184217 | 0.13024074653837264 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 149940 | 0.10600703266236881 | Illumina Single End PCR Primer 1 (100% over 21bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGAATC | 157305 | 0.0 | 132.61325 | 2 |
| CGAACTT | 90025 | 0.0 | 127.805214 | 1 |
| CAAGCTA | 108345 | 0.0 | 127.620026 | 2 |
| ACGCTTA | 131625 | 0.0 | 127.21334 | 2 |
| CTCAATG | 147480 | 0.0 | 126.95768 | 1 |
| ATGCCTA | 108460 | 0.0 | 126.76452 | 1 |
| CAATGGA | 287165 | 0.0 | 126.1419 | 1 |
| TGCCTAA | 107630 | 0.0 | 125.450806 | 2 |
| GATAGAC | 152305 | 0.0 | 124.7519 | 1 |
| TAAGGTC | 82520 | 0.0 | 124.2298 | 2 |
| GGCTAAC | 101955 | 0.0 | 124.10751 | 2 |
| CTATGCA | 166305 | 0.0 | 123.505646 | 2 |
| AGGCTAA | 103465 | 0.0 | 123.17877 | 1 |
| CATCAAG | 85785 | 0.0 | 123.1384 | 1 |
| CTAACGA | 117205 | 0.0 | 122.67835 | 2 |
| TCAATGA | 150935 | 0.0 | 122.43939 | 2 |
| ATAGACA | 159870 | 0.0 | 121.879005 | 2 |
| TGGAACA | 177940 | 0.0 | 120.94467 | 1 |
| ACAAGCT | 115460 | 0.0 | 120.744995 | 1 |
| GAGTCAA | 97090 | 0.0 | 120.42615 | 2 |