Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR10540275_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 174281883 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 4878334 | 2.7991056305032003 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1896912 | 1.088416057565777 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1320828 | 0.7578687912156653 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1313714 | 0.7537868982055926 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 300553 | 0.17245223360365 | Illumina Single End PCR Primer 1 (100% over 22bp) |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 261396 | 0.14998460855509577 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 192349 | 0.11036660649345864 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GGCTAAC | 283655 | 0.0 | 133.00421 | 2 |
| AGTTAGC | 175935 | 0.0 | 132.60211 | 2 |
| AGGCTAA | 286090 | 0.0 | 132.16061 | 1 |
| CGAACTT | 144550 | 0.0 | 129.14519 | 1 |
| ACGCTTA | 157235 | 0.0 | 128.97418 | 2 |
| ACGTGAT | 209855 | 0.0 | 128.74664 | 2 |
| AACGTGA | 211090 | 0.0 | 127.78285 | 1 |
| CTATGCA | 210245 | 0.0 | 126.06939 | 2 |
| CGAGTAA | 185820 | 0.0 | 125.9085 | 2 |
| GCTAACT | 116990 | 0.0 | 125.53807 | 3 |
| CCGAAGT | 125375 | 0.0 | 125.353226 | 1 |
| CAATGGA | 346275 | 0.0 | 123.96327 | 1 |
| GATAGAC | 173505 | 0.0 | 123.92072 | 1 |
| TCACGCA | 189925 | 0.0 | 123.03549 | 2 |
| ACTTCGA | 110435 | 0.0 | 122.81819 | 2 |
| CGCATAC | 201160 | 0.0 | 122.81143 | 1 |
| CTCAATG | 167695 | 0.0 | 122.39831 | 1 |
| CAAGCTA | 113830 | 0.0 | 122.34953 | 2 |
| AATCCGT | 131340 | 0.0 | 119.81368 | 1 |
| GCGAGTA | 197385 | 0.0 | 119.77398 | 1 |