Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6502996_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 80498312 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 32 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 5472780 | 6.798627032079878 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 1036395 | 1.2874742019435141 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 840730 | 1.044406993279561 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 728789 | 0.9053469344798186 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 353928 | 0.43967133124480917 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 225621 | 0.2802804113457683 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 212455 | 0.2639247888825296 | Illumina Single End PCR Primer 1 (100% over 21bp) |
| GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 179620 | 0.22313511369033429 | No Hit |
| ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 167307 | 0.20783914077602025 | No Hit |
| GCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA | 85253 | 0.10590656857500318 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GGCTAAC | 536975 | 0.0 | 142.25937 | 2 |
| GCTAACT | 275835 | 0.0 | 141.52563 | 3 |
| ATGAATC | 217000 | 0.0 | 141.31087 | 2 |
| AGTTAGC | 217085 | 0.0 | 141.20247 | 2 |
| TAAGGTC | 231825 | 0.0 | 140.66862 | 2 |
| AGGCTAA | 544925 | 0.0 | 139.89142 | 1 |
| GAGTTAG | 219270 | 0.0 | 139.38525 | 1 |
| GAACAGG | 364825 | 0.0 | 139.18907 | 1 |
| GATGTAC | 236485 | 0.0 | 139.16014 | 2 |
| CCTAATC | 212480 | 0.0 | 138.96162 | 1 |
| AGAGATC | 144925 | 0.0 | 138.90958 | 2 |
| GCTAACA | 150710 | 0.0 | 138.82112 | 3 |
| AGATGTA | 236690 | 0.0 | 138.66959 | 1 |
| CCGACAA | 213465 | 0.0 | 138.39128 | 1 |
| GGATTGC | 194400 | 0.0 | 138.23642 | 2 |
| CAGATTC | 180170 | 0.0 | 137.82182 | 2 |
| AGCCATG | 112220 | 0.0 | 137.79831 | 1 |
| CTAATCC | 214515 | 0.0 | 137.5947 | 2 |
| CTAAGGT | 237175 | 0.0 | 137.32922 | 1 |
| CGGATTG | 195390 | 0.0 | 137.31491 | 1 |