Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6502995_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 81552331 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 36 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 2297310 | 2.8169765006471734 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 915670 | 1.122800524242526 | No Hit |
| ACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACT | 618412 | 0.758300826496302 | No Hit |
| AACAACCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT | 230727 | 0.282918951758718 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 119596 | 0.14664939497560162 | No Hit |
| CATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT | 86117 | 0.1055972268898114 | No Hit |
| CAGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTT | 83036 | 0.10181928460144198 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 82879 | 0.10162677017778927 | Illumina Single End PCR Primer 1 (100% over 22bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACGTATC | 410660 | 0.0 | 142.12617 | 1 |
| AACGTGA | 192085 | 0.0 | 141.47942 | 1 |
| ACGTGAT | 193425 | 0.0 | 141.01015 | 2 |
| CAAGCTA | 208315 | 0.0 | 140.97093 | 2 |
| ATGCCTA | 134400 | 0.0 | 140.22905 | 1 |
| AACATCG | 190960 | 0.0 | 139.88959 | 2 |
| ACTTCGA | 104045 | 0.0 | 139.20314 | 2 |
| ACAAGCT | 211110 | 0.0 | 139.1902 | 1 |
| AAGACTA | 144845 | 0.0 | 139.03593 | 2 |
| ACGCTTA | 104960 | 0.0 | 138.92937 | 2 |
| CTCAATG | 230575 | 0.0 | 138.87308 | 1 |
| ATCCTGT | 296430 | 0.0 | 138.73174 | 1 |
| CAATGGA | 327760 | 0.0 | 138.72641 | 1 |
| TGCCTAA | 135520 | 0.0 | 138.59932 | 2 |
| CAAGACT | 146235 | 0.0 | 137.73613 | 1 |
| CCGAAGT | 109065 | 0.0 | 137.55046 | 1 |
| TCCTGTA | 298705 | 0.0 | 137.5417 | 2 |
| CGAAGTA | 109090 | 0.0 | 137.3919 | 2 |
| AAGCTAT | 107000 | 0.0 | 137.18536 | 3 |
| GTCACTA | 82510 | 0.0 | 136.86267 | 2 |