Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6502989_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 104617417 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 2320136 | 2.2177339744490157 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1321740 | 1.263403396778569 | No Hit |
| ACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACT | 568608 | 0.5435117940256544 | No Hit |
| AACAACCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT | 216204 | 0.2066615733783601 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 166789 | 0.15942756453258639 | No Hit |
| CATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT | 144601 | 0.13821885891141816 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 134584 | 0.12864397139531747 | No Hit |
| CTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTT | 128194 | 0.1225360018208058 | No Hit |
| CATGTACTCTGCGTTGATACGACTGCTTCCCATGTACTCTGCGTTGATAC | 126511 | 0.12092728307371611 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 121938 | 0.11655611799324006 | Illumina Single End PCR Primer 1 (100% over 22bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CACTGTG | 1647870 | 0.0 | 142.39394 | 1 |
| CTCAATG | 352130 | 0.0 | 142.15678 | 1 |
| TGTGACT | 1235530 | 0.0 | 142.11958 | 6 |
| GTGTGAC | 1472020 | 0.0 | 142.1176 | 5 |
| GTGACTG | 1113890 | 0.0 | 142.06729 | 7 |
| AGAGTCA | 205765 | 0.0 | 142.00494 | 1 |
| TGACTGG | 1078970 | 0.0 | 141.79892 | 8 |
| ACTGTGT | 1781455 | 0.0 | 141.6321 | 2 |
| AGTCACT | 173970 | 0.0 | 141.57007 | 1 |
| TGTGTGA | 1492550 | 0.0 | 141.41313 | 4 |
| CAATGGA | 656880 | 0.0 | 140.5838 | 1 |
| CTGTGTG | 1735595 | 0.0 | 139.20929 | 3 |
| GAGTCAA | 208780 | 0.0 | 139.07458 | 2 |
| AGTCAAT | 119905 | 0.0 | 138.73665 | 3 |
| TCAATGA | 358900 | 0.0 | 138.12962 | 2 |
| ACAAGCT | 131235 | 0.0 | 137.95464 | 1 |
| CAAGCTA | 130355 | 0.0 | 137.87117 | 2 |
| ATGCCTA | 67325 | 0.0 | 137.39314 | 1 |
| CATCAAG | 86940 | 0.0 | 137.2494 | 1 |
| GTCACTA | 178650 | 0.0 | 137.12617 | 2 |