Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6502976_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 113955208 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 34 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 5430627 | 4.765580349780942 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 869319 | 0.7628602634817708 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 784555 | 0.6884766512821424 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 646302 | 0.5671544208843882 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 559046 | 0.4905839845424177 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 363125 | 0.3186559055730037 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 320420 | 0.2811806547709518 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 215820 | 0.18939020321037017 | Illumina Single End PCR Primer 1 (100% over 21bp) |
| GACAGTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACT | 184963 | 0.1623120199999986 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTCCGTTGATA | 157213 | 0.13796034666533188 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACT | 140519 | 0.12331073100230751 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATAGCGA | 183655 | 0.0 | 142.3155 | 1 |
| ATCATTC | 448935 | 0.0 | 141.31996 | 1 |
| TATCAGC | 248490 | 0.0 | 140.85452 | 1 |
| TAGCGAC | 186375 | 0.0 | 140.066 | 2 |
| ACAGTGC | 429310 | 0.0 | 140.04912 | 2 |
| ATGAATC | 205615 | 0.0 | 139.87003 | 2 |
| GACAGTG | 429375 | 0.0 | 139.83871 | 1 |
| AGAGATC | 354175 | 0.0 | 139.06909 | 2 |
| TCACGCA | 192860 | 0.0 | 138.84569 | 2 |
| GTCTGTC | 308360 | 0.0 | 138.81087 | 1 |
| GATAGAC | 113360 | 0.0 | 138.68323 | 1 |
| GTGTGAC | 446435 | 0.0 | 138.53761 | 5 |
| ATCAGCA | 252430 | 0.0 | 138.25711 | 2 |
| TCAAGTG | 559625 | 0.0 | 138.1416 | 1 |
| ATCCGTC | 198240 | 0.0 | 137.82384 | 2 |
| AGTTAGC | 121135 | 0.0 | 137.81767 | 2 |
| GTGACTG | 298690 | 0.0 | 137.75365 | 7 |
| CAGATTC | 267220 | 0.0 | 137.47488 | 2 |
| CCTAATC | 176680 | 0.0 | 136.98662 | 1 |
| AGTGTGA | 488310 | 0.0 | 136.84439 | 4 |