Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6502994_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 101177121 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 33 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 2706184 | 2.6746995499110913 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 901427 | 0.8909395633030516 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 737682 | 0.7290996153171823 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 532238 | 0.5260458043671751 | No Hit |
| ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 199225 | 0.1969071644171413 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 144278 | 0.14259943213841794 | Illumina Single End PCR Primer 1 (100% over 21bp) |
| GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 140744 | 0.13910654761564129 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 135657 | 0.134078731099692 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 102231 | 0.10104161789699473 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GATAGAC | 212520 | 0.0 | 143.38208 | 1 |
| ATAGCGA | 158180 | 0.0 | 142.89607 | 1 |
| AGTTAGC | 482760 | 0.0 | 142.42792 | 2 |
| GAGTTAG | 484490 | 0.0 | 142.08835 | 1 |
| TAGCGAC | 159380 | 0.0 | 141.48317 | 2 |
| AGAGATC | 357925 | 0.0 | 141.40964 | 2 |
| GTACGCA | 116505 | 0.0 | 141.22144 | 1 |
| ATGAATC | 222285 | 0.0 | 140.80429 | 2 |
| AGCACCT | 291890 | 0.0 | 140.67188 | 1 |
| ATAGACA | 217005 | 0.0 | 140.5258 | 2 |
| GGCTAAC | 281145 | 0.0 | 140.1312 | 2 |
| GTTAGCT | 206155 | 0.0 | 139.63509 | 3 |
| TGGAACA | 313780 | 0.0 | 139.38866 | 1 |
| GCTAACT | 147030 | 0.0 | 138.77542 | 3 |
| TACGCAA | 118240 | 0.0 | 138.76149 | 2 |
| TATCAGC | 166000 | 0.0 | 138.73756 | 1 |
| GAGATCT | 214835 | 0.0 | 138.6901 | 3 |
| GTTAGCG | 144025 | 0.0 | 138.66267 | 3 |
| AGCGACT | 77840 | 0.0 | 138.57695 | 3 |
| AGGCTAA | 284285 | 0.0 | 138.44551 | 1 |