Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6503017_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 91584607 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 34 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 3444256 | 3.76073677970797 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 859152 | 0.9380965078552994 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 785722 | 0.8579192789460788 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 780423 | 0.8521333721506279 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 324444 | 0.35425603780775083 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 135121 | 0.14753680168109473 | Illumina Single End PCR Primer 1 (100% over 21bp) |
| CCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA | 131441 | 0.14351865920001164 | No Hit |
| GCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA | 104948 | 0.11459130899584469 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 95899 | 0.10471082766124662 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATAGCGA | 194300 | 0.0 | 142.88022 | 1 |
| TAGCGAC | 195700 | 0.0 | 141.95927 | 2 |
| ATGAATC | 271185 | 0.0 | 141.5324 | 2 |
| TATCAGC | 191965 | 0.0 | 141.3307 | 1 |
| AGTTAGC | 172690 | 0.0 | 140.8768 | 2 |
| ATCCGTC | 217160 | 0.0 | 140.22903 | 2 |
| ATCAGCA | 193365 | 0.0 | 139.88637 | 2 |
| GGCTAAC | 191760 | 0.0 | 138.91682 | 2 |
| GATGTAC | 190300 | 0.0 | 138.63557 | 2 |
| AGCGACT | 97585 | 0.0 | 138.3279 | 3 |
| GTCTGTC | 325435 | 0.0 | 138.15112 | 1 |
| GATAGAC | 74070 | 0.0 | 137.82494 | 1 |
| GTCGTAG | 113705 | 0.0 | 137.8049 | 1 |
| CCTAATC | 205600 | 0.0 | 137.6005 | 1 |
| AGAGATC | 175330 | 0.0 | 137.19905 | 2 |
| TCTGTCA | 328700 | 0.0 | 137.05931 | 2 |
| TCACGCA | 102445 | 0.0 | 137.01175 | 2 |
| ACACGAC | 261875 | 0.0 | 137.00455 | 1 |
| CTGTCAT | 165115 | 0.0 | 136.97101 | 3 |
| GCTAACT | 98805 | 0.0 | 136.6199 | 3 |