Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6502999_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 104479530 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 39 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 1908499 | 1.8266726506139526 | No Hit |
| ACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACT | 551035 | 0.5274095318001526 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 537568 | 0.5145199255777663 | No Hit |
| CATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT | 269235 | 0.2576916262927293 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 235080 | 0.2250010121599896 | No Hit |
| CATGTACTCTGCGTTGATACGACTGCTTCCCATGTACTCTGCGTTGATAC | 232904 | 0.22291830753832834 | No Hit |
| ACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTACCATGTACT | 201192 | 0.19256595047852915 | No Hit |
| AACAACCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT | 179882 | 0.17216961064047664 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCGCATGTACTCTGCGTTGATAC | 161933 | 0.15499016888762804 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 116150 | 0.1111701019328858 | Illumina Single End PCR Primer 1 (100% over 22bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CAAGACT | 479490 | 0.0 | 144.1571 | 1 |
| CTCAATG | 260380 | 0.0 | 142.59195 | 1 |
| AAGACTA | 491175 | 0.0 | 142.31236 | 2 |
| ATGCCTA | 158115 | 0.0 | 141.40495 | 1 |
| AGACTAT | 254955 | 0.0 | 140.82906 | 3 |
| CAATGGA | 381610 | 0.0 | 140.7178 | 1 |
| TGCCTAA | 158415 | 0.0 | 140.69214 | 2 |
| AGACTAA | 172305 | 0.0 | 140.3264 | 3 |
| CAAGCTA | 109935 | 0.0 | 139.71657 | 2 |
| AGAGTCA | 128610 | 0.0 | 139.49814 | 1 |
| ACAAGCT | 110630 | 0.0 | 139.09694 | 1 |
| GAGTCAA | 128410 | 0.0 | 138.80084 | 2 |
| CGAACTT | 66085 | 0.0 | 138.69836 | 1 |
| GACTAAT | 88590 | 0.0 | 138.22714 | 4 |
| TCAATGA | 273275 | 0.0 | 138.02802 | 2 |
| AAGGTAC | 150910 | 0.0 | 138.01715 | 1 |
| ACGCTTA | 126755 | 0.0 | 138.00148 | 2 |
| ATGTGAC | 455115 | 0.0 | 137.86464 | 5 |
| CATCAAG | 59130 | 0.0 | 137.7079 | 1 |
| ACTTCGA | 121770 | 0.0 | 137.50311 | 2 |