Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6503040_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 155679833 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 39 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 4804341 | 3.086039410127065 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1506125 | 0.9674502926785643 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1080065 | 0.6937732262341263 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 688777 | 0.44243174387269546 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 309018 | 0.19849584499490053 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 220404 | 0.1415751775633007 | Illumina Single End PCR Primer 1 (100% over 22bp) |
| GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 174848 | 0.1123125562448413 | No Hit |
| AACAACCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT | 165360 | 0.10621799677804125 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATAGCGA | 588245 | 0.0 | 143.37111 | 1 |
| TAGCGAC | 586230 | 0.0 | 142.30812 | 2 |
| ATGCCTA | 249825 | 0.0 | 140.75024 | 1 |
| AGCGACT | 284920 | 0.0 | 139.69742 | 3 |
| GTGACTG | 579015 | 0.0 | 139.60648 | 7 |
| CATCGGT | 1066375 | 0.0 | 139.21 | 2 |
| GGTGACT | 621025 | 0.0 | 139.03816 | 6 |
| TCACGCA | 282085 | 0.0 | 139.0046 | 2 |
| ATCGGTG | 1034520 | 0.0 | 138.89703 | 3 |
| CAAGCTA | 234715 | 0.0 | 138.84523 | 2 |
| TCGGTGA | 856525 | 0.0 | 138.78194 | 4 |
| TGACTGG | 594050 | 0.0 | 138.70065 | 8 |
| ACAAGCT | 237850 | 0.0 | 138.17613 | 1 |
| CGGTGAC | 951695 | 0.0 | 138.1202 | 5 |
| TATCAGC | 170550 | 0.0 | 137.89471 | 1 |
| ATCATTC | 354835 | 0.0 | 137.72726 | 1 |
| ATTGGCT | 492420 | 0.0 | 137.50543 | 1 |
| AACGTGA | 219990 | 0.0 | 137.33081 | 1 |
| TGCCTAA | 255520 | 0.0 | 137.0484 | 2 |
| ACGTGAT | 219840 | 0.0 | 137.01164 | 2 |