Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6502987_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 62328356 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 54 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 1327006 | 2.1290566367577544 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 359070 | 0.5760941296125314 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 295281 | 0.4737506633417381 | No Hit |
| ACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACT | 209293 | 0.33579098412286057 | No Hit |
| CTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTT | 98677 | 0.15831798932736169 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 84179 | 0.13505730842636055 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA | 75253 | 0.12073637880004409 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 72078 | 0.11564238915590844 | Illumina Single End PCR Primer 1 (100% over 22bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCCTAAG | 1091460 | 0.0 | 144.4917 | 1 |
| AAGTGAC | 927705 | 0.0 | 142.82407 | 5 |
| CTAAGTG | 977645 | 0.0 | 142.82181 | 3 |
| TAAGTGA | 868910 | 0.0 | 142.67133 | 4 |
| CCTAAGT | 1077600 | 0.0 | 142.51723 | 2 |
| CATCAAG | 106570 | 0.0 | 142.04832 | 1 |
| AGTGACT | 506675 | 0.0 | 141.8196 | 6 |
| GTGACTG | 478180 | 0.0 | 141.30371 | 7 |
| ATCAAGT | 107905 | 0.0 | 140.74857 | 2 |
| TGACTGG | 455635 | 0.0 | 140.56458 | 8 |
| AGTGACC | 229395 | 0.0 | 140.1368 | 6 |
| TAAGTCA | 61125 | 0.0 | 139.38876 | 4 |
| ACATTGG | 104080 | 0.0 | 139.05544 | 1 |
| CTAAGTC | 77825 | 0.0 | 138.51976 | 3 |
| CTCAATG | 105835 | 0.0 | 138.43535 | 1 |
| AGTGACA | 108185 | 0.0 | 138.06712 | 6 |
| CAATGGA | 204860 | 0.0 | 138.01248 | 1 |
| AGTGACG | 132345 | 0.0 | 137.60579 | 6 |
| AGAGTCA | 51960 | 0.0 | 137.13583 | 1 |
| TAAGTGC | 78550 | 0.0 | 136.57674 | 4 |