Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6503037_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 114861408 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 30 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 3643340 | 3.171944401029805 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 862054 | 0.7505166574311887 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 844109 | 0.7348934813684331 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 394946 | 0.34384568923271425 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 390755 | 0.3401969441293981 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 150716 | 0.131215525409544 | Illumina Single End PCR Primer 1 (100% over 21bp) |
| CCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA | 142480 | 0.12404514491063873 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 133363 | 0.11610775309318863 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 116904 | 0.10177831008305245 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATAGCGA | 250405 | 0.0 | 144.62395 | 1 |
| GATAGAC | 176465 | 0.0 | 143.53648 | 1 |
| TATCAGC | 244700 | 0.0 | 143.47568 | 1 |
| TAGCGAC | 254980 | 0.0 | 142.39125 | 2 |
| ATGAATC | 405380 | 0.0 | 142.34355 | 2 |
| AGGCTAA | 423880 | 0.0 | 141.64507 | 1 |
| CAGATTC | 347410 | 0.0 | 141.42627 | 2 |
| GGCTAAC | 426830 | 0.0 | 141.29854 | 2 |
| AGTTAGC | 181640 | 0.0 | 141.19246 | 2 |
| TTCACGC | 224045 | 0.0 | 141.08116 | 1 |
| ACAGTGC | 322995 | 0.0 | 141.04259 | 2 |
| AGCACCT | 164325 | 0.0 | 140.8654 | 1 |
| TGGAACA | 315720 | 0.0 | 140.85802 | 1 |
| ATCCGTC | 202595 | 0.0 | 140.82207 | 2 |
| ATCAGCA | 249300 | 0.0 | 140.80482 | 2 |
| GCTAACT | 213490 | 0.0 | 140.68738 | 3 |
| TCACGCA | 224705 | 0.0 | 140.55806 | 2 |
| AGCGACT | 124570 | 0.0 | 140.21927 | 3 |
| ATAGACA | 180995 | 0.0 | 139.78264 | 2 |
| GCCACAT | 196770 | 0.0 | 139.62556 | 1 |