Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6502978_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 102283117 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 40 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 3173890 | 3.103043877710532 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1210515 | 1.183494437307772 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 968697 | 0.9470741882064466 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 896348 | 0.876340129524993 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 566443 | 0.5537991181868265 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 365727 | 0.35756340902282047 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 236671 | 0.23138813808343367 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 174784 | 0.17088255141852982 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 138036 | 0.13495482348274546 | Illumina Single End PCR Primer 1 (100% over 21bp) |
| CCATGTACTCTGCGTTGATAGCACTGCTTCCCATGTACTCTGCGTTGATA | 123074 | 0.12032679840994678 | No Hit |
| GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC | 117930 | 0.11529762042742596 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACT | 108483 | 0.10606149204467438 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTCCGTTGATA | 106681 | 0.10429971546526098 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGGTCAG | 602065 | 0.0 | 138.73662 | 1 |
| CCTAATC | 213730 | 0.0 | 138.61311 | 1 |
| GATAGAC | 189745 | 0.0 | 137.8493 | 1 |
| TATCAGC | 202165 | 0.0 | 137.59079 | 1 |
| ATGAATC | 174055 | 0.0 | 137.46681 | 2 |
| ATAGCGA | 108890 | 0.0 | 137.366 | 1 |
| CAGTGAC | 497500 | 0.0 | 136.72165 | 5 |
| GTGCGAA | 354015 | 0.0 | 136.27931 | 2 |
| AGGCTAA | 190015 | 0.0 | 136.26048 | 1 |
| TCAGTGA | 416960 | 0.0 | 136.244 | 4 |
| AGTTAGC | 130270 | 0.0 | 136.19122 | 2 |
| ATCATTC | 195145 | 0.0 | 136.0013 | 1 |
| GTCAGTG | 534310 | 0.0 | 135.88351 | 3 |
| GGTCAGT | 570095 | 0.0 | 135.85014 | 2 |
| ATAGACA | 193830 | 0.0 | 135.68774 | 2 |
| GGCTAAC | 190650 | 0.0 | 135.5568 | 2 |
| AACTCAC | 172440 | 0.0 | 135.32712 | 1 |
| CTAATCC | 219565 | 0.0 | 135.24844 | 2 |
| AGATGTA | 292035 | 0.0 | 135.17455 | 1 |
| AGTGACT | 320920 | 0.0 | 135.1508 | 6 |