Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6502982_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 94949661 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 32 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 3239973 | 3.4123060218192878 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 645063 | 0.6793736735932105 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 496467 | 0.5228739047314767 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 363168 | 0.3824847779077379 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 348783 | 0.36733464482827377 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 225559 | 0.2375564037032212 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 157054 | 0.16540764690039284 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 143265 | 0.15088521485084608 | Illumina Single End PCR Primer 1 (100% over 21bp) |
| ATCATTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC | 116861 | 0.12307679539793195 | No Hit |
| ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 104542 | 0.11010255213022824 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATAGCGA | 170670 | 0.0 | 141.75168 | 1 |
| TATCAGC | 250465 | 0.0 | 141.42601 | 1 |
| TAGCGAC | 170855 | 0.0 | 141.33725 | 2 |
| GATAGAC | 168335 | 0.0 | 141.31288 | 1 |
| AGTTAGC | 193855 | 0.0 | 140.7379 | 2 |
| TCTGTCA | 387135 | 0.0 | 140.45097 | 2 |
| GTCTGTC | 387890 | 0.0 | 140.18315 | 1 |
| ATCAGCA | 251340 | 0.0 | 140.09535 | 2 |
| GCGAGTA | 212190 | 0.0 | 140.03162 | 1 |
| TGGAACA | 399500 | 0.0 | 140.00085 | 1 |
| AGGCTAA | 222580 | 0.0 | 139.99524 | 1 |
| GTCGTAG | 142070 | 0.0 | 139.48268 | 1 |
| GGCTAAC | 223000 | 0.0 | 139.4478 | 2 |
| ATAGACA | 170870 | 0.0 | 139.35106 | 2 |
| CTGTCAT | 196965 | 0.0 | 139.28603 | 3 |
| ATGAATC | 115280 | 0.0 | 139.23563 | 2 |
| GCTAACT | 113920 | 0.0 | 139.20615 | 3 |
| CGAGTAA | 212485 | 0.0 | 139.16713 | 2 |
| CCACATA | 368935 | 0.0 | 138.90282 | 2 |
| ATCATTC | 217330 | 0.0 | 138.68188 | 1 |