Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6503041_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 110546024 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 34 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 1522619 | 1.3773620659572523 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 469920 | 0.4250899154907643 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 171248 | 0.15491104410955567 | Illumina Single End PCR Primer 1 (100% over 22bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CACTTCG | 2843725 | 0.0 | 143.377 | 1 |
| ACTTCGA | 2832620 | 0.0 | 143.31079 | 2 |
| CTTCGAA | 1013465 | 0.0 | 141.45573 | 3 |
| CTTCGAT | 1479105 | 0.0 | 140.73308 | 3 |
| TTCGATA | 498185 | 0.0 | 140.56999 | 4 |
| ACGTGAT | 310940 | 0.0 | 140.53117 | 2 |
| AACGTGA | 309220 | 0.0 | 140.51204 | 1 |
| ATGCCTA | 261925 | 0.0 | 140.37451 | 1 |
| AACATCG | 352480 | 0.0 | 140.02693 | 2 |
| TTCGAAT | 532550 | 0.0 | 140.01422 | 4 |
| CATCAAG | 283430 | 0.0 | 139.97986 | 1 |
| CTTCGAG | 396695 | 0.0 | 139.52109 | 3 |
| TTCGATT | 804020 | 0.0 | 139.16733 | 4 |
| AAGGTAC | 226065 | 0.0 | 139.10039 | 1 |
| CAAGCTA | 191655 | 0.0 | 139.0519 | 2 |
| AGGTACA | 227180 | 0.0 | 138.47365 | 2 |
| AGAGTCA | 162010 | 0.0 | 138.27913 | 1 |
| CTCAATG | 233595 | 0.0 | 137.80315 | 1 |
| ATCAAGT | 287770 | 0.0 | 137.78024 | 2 |
| GAGTCAA | 162300 | 0.0 | 137.75307 | 2 |