Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6502984_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 84630315 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 32 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1935327 | 2.286801130304194 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 429931 | 0.5080106342508592 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 418523 | 0.4945308309439708 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 390299 | 0.4611810791440396 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 312419 | 0.3691573167369163 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 168707 | 0.19934582542910306 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 91857 | 0.10853912099937238 | Illumina Single End PCR Primer 1 (100% over 21bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GATAGAC | 305335 | 0.0 | 142.89583 | 1 |
| ATAGCGA | 143155 | 0.0 | 141.74849 | 1 |
| TAGCGAC | 143900 | 0.0 | 141.11931 | 2 |
| AGGCTAA | 335220 | 0.0 | 141.11903 | 1 |
| ATAGACA | 310285 | 0.0 | 140.80365 | 2 |
| GGCTAAC | 336815 | 0.0 | 140.74423 | 2 |
| ATCCGTC | 224300 | 0.0 | 140.74062 | 2 |
| ATGAATC | 217865 | 0.0 | 140.6126 | 2 |
| GCTAACT | 173565 | 0.0 | 140.17767 | 3 |
| AGTTAGC | 194825 | 0.0 | 139.92299 | 2 |
| GTACGCA | 113240 | 0.0 | 139.89967 | 1 |
| TACGCAA | 113560 | 0.0 | 138.64427 | 2 |
| TAGACAT | 157225 | 0.0 | 138.51717 | 3 |
| GATGTAC | 215795 | 0.0 | 138.44643 | 2 |
| AGCGACT | 70220 | 0.0 | 138.15994 | 3 |
| GCGAGTA | 123490 | 0.0 | 138.0804 | 1 |
| GAGTTAG | 198375 | 0.0 | 137.6673 | 1 |
| AGAGATC | 141920 | 0.0 | 137.6115 | 2 |
| CCTAATC | 178490 | 0.0 | 137.30737 | 1 |
| GTGCGAA | 124730 | 0.0 | 137.2126 | 2 |