Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6503027_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 84923195 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 35 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 3950743 | 4.652136557038392 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 843752 | 0.9935471692980934 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 695093 | 0.8184960539932583 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 528940 | 0.6228451484897618 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 336297 | 0.39600135157420774 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 183424 | 0.21598810548755262 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 149176 | 0.1756599006902649 | Illumina Single End PCR Primer 1 (100% over 21bp) |
| CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 104973 | 0.12360933900331941 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GATAGAC | 222640 | 0.0 | 143.72511 | 1 |
| TATCAGC | 177455 | 0.0 | 142.73363 | 1 |
| AGTTAGC | 233710 | 0.0 | 142.2438 | 2 |
| ATGAATC | 292295 | 0.0 | 142.0009 | 2 |
| TTCACGC | 256415 | 0.0 | 141.5977 | 1 |
| AGCACCT | 169670 | 0.0 | 140.98828 | 1 |
| TCACGCA | 257390 | 0.0 | 140.73488 | 2 |
| ATAGACA | 228090 | 0.0 | 140.72661 | 2 |
| GCGAGTA | 170745 | 0.0 | 140.10063 | 1 |
| GTGCGAA | 278835 | 0.0 | 140.08179 | 2 |
| ATCAGCA | 181750 | 0.0 | 139.58069 | 2 |
| GAGTTAG | 238510 | 0.0 | 139.35542 | 1 |
| CGAGTAA | 172005 | 0.0 | 138.65677 | 2 |
| GGCTTCA | 243710 | 0.0 | 138.61105 | 2 |
| CCTAATC | 117040 | 0.0 | 138.45345 | 1 |
| TGGAACA | 176050 | 0.0 | 138.44539 | 1 |
| ATCCGTC | 105125 | 0.0 | 138.31602 | 2 |
| CACGCAT | 126535 | 0.0 | 138.31035 | 3 |
| GTCGTAG | 107655 | 0.0 | 138.18993 | 1 |
| ACCTTAC | 148365 | 0.0 | 138.1267 | 2 |