Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6503002_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 124746070 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 33 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 4372019 | 3.5047348585811164 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 1454550 | 1.1660086766661266 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1027645 | 0.8237894788990147 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 731182 | 0.5861363007267483 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 645160 | 0.5171786173303896 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 366412 | 0.2937262873291319 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACT | 255019 | 0.20443048827109342 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 233339 | 0.187051183255713 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 211063 | 0.16919410767810159 | Illumina Single End PCR Primer 1 (100% over 21bp) |
| GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC | 161647 | 0.12958083569285989 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 146281 | 0.11726301277467097 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTCCGTTGATA | 131943 | 0.1057692639134844 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGGCTAA | 487320 | 0.0 | 142.66304 | 1 |
| GATAGAC | 193645 | 0.0 | 141.88089 | 1 |
| TATCAGC | 245975 | 0.0 | 141.8664 | 1 |
| TGGAACA | 436100 | 0.0 | 141.08614 | 1 |
| GGCTAAC | 492400 | 0.0 | 140.53432 | 2 |
| ACCTTAC | 437510 | 0.0 | 140.20082 | 2 |
| ATAGCGA | 95260 | 0.0 | 140.13968 | 1 |
| AACTCAC | 246425 | 0.0 | 139.944 | 1 |
| ATCAGCA | 249200 | 0.0 | 139.59442 | 2 |
| TCACGCA | 245310 | 0.0 | 139.53706 | 2 |
| TAAGGTC | 212915 | 0.0 | 139.43956 | 2 |
| ATGAATC | 170165 | 0.0 | 139.37312 | 2 |
| AGTTAGC | 148850 | 0.0 | 139.33961 | 2 |
| GCTAACT | 256525 | 0.0 | 139.06927 | 3 |
| TTCACGC | 247450 | 0.0 | 139.04784 | 1 |
| ATAGACA | 200420 | 0.0 | 138.02115 | 2 |
| CCTAATC | 189835 | 0.0 | 137.90787 | 1 |
| ATCCGTC | 180155 | 0.0 | 137.63313 | 2 |
| TGTTCTA | 494985 | 0.0 | 137.52177 | 2 |
| TACGCAA | 144075 | 0.0 | 137.43484 | 2 |