Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6502986_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 113805838 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 2418183 | 2.124832119772274 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 1872503 | 1.6453488089073252 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 825665 | 0.725503203095785 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 369830 | 0.32496575439302156 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 197313 | 0.17337687017426998 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 156966 | 0.13792438310590008 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 152652 | 0.1341337164091705 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 121407 | 0.10667906157854573 | Illumina Single End PCR Primer 1 (100% over 21bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGTTAGC | 477080 | 0.0 | 141.70163 | 2 |
| CGTGAGA | 472510 | 0.0 | 140.95448 | 2 |
| ATAGCGA | 178080 | 0.0 | 140.56813 | 1 |
| CCGTGAG | 476910 | 0.0 | 140.29659 | 1 |
| TAGCGAC | 177645 | 0.0 | 140.07817 | 2 |
| CGCATAC | 216635 | 0.0 | 139.74425 | 1 |
| GAGTTAG | 487460 | 0.0 | 138.96904 | 1 |
| ACTTCGA | 89130 | 0.0 | 137.46828 | 2 |
| GTTAGCT | 198655 | 0.0 | 137.41199 | 3 |
| GCATACA | 220230 | 0.0 | 137.12991 | 2 |
| CCGAAGT | 198280 | 0.0 | 136.88463 | 1 |
| CGAAGTA | 198870 | 0.0 | 136.75702 | 2 |
| AGCGACT | 85265 | 0.0 | 136.66353 | 3 |
| GTCGTAG | 121030 | 0.0 | 136.65886 | 1 |
| GTTAGCG | 147725 | 0.0 | 136.40831 | 3 |
| ATGAATC | 107715 | 0.0 | 136.3487 | 2 |
| GCTAACT | 99340 | 0.0 | 136.22887 | 3 |
| AGGCTAA | 206570 | 0.0 | 135.94609 | 1 |
| GGCTAAC | 206515 | 0.0 | 135.49463 | 2 |
| GTTAGCA | 153420 | 0.0 | 134.90822 | 3 |