Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6502974_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 118987360 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 38 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 4248897 | 3.570880974248021 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1754196 | 1.4742708805372267 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 1349820 | 1.13442301770541 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1198693 | 1.0074120478007076 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 908845 | 0.7638164255430157 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 386508 | 0.3248311417279953 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 258828 | 0.2175256262513934 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACT | 203863 | 0.17133164396621625 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 198450 | 0.1667824212588631 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 171405 | 0.1440531162301609 | Illumina Single End PCR Primer 1 (100% over 21bp) |
| CCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA | 152519 | 0.12818084206591354 | No Hit |
| GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC | 121495 | 0.1021074843580024 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATAGCGA | 220975 | 0.0 | 142.55305 | 1 |
| GTCTGTC | 681665 | 0.0 | 142.11385 | 1 |
| GATAGAC | 214335 | 0.0 | 141.66795 | 1 |
| ATTGGCG | 747435 | 0.0 | 141.49426 | 1 |
| TAGCGAC | 223425 | 0.0 | 140.36421 | 2 |
| TATCAGC | 215285 | 0.0 | 140.23965 | 1 |
| TCACGCA | 322300 | 0.0 | 139.85672 | 2 |
| TTCACGC | 322925 | 0.0 | 139.78291 | 1 |
| TCTGTCA | 695390 | 0.0 | 139.71751 | 2 |
| ATGAATC | 209280 | 0.0 | 139.55528 | 2 |
| GCGAGTA | 214550 | 0.0 | 139.37576 | 1 |
| CTGTCAT | 349820 | 0.0 | 138.8746 | 3 |
| CTGTCAA | 237665 | 0.0 | 138.16258 | 3 |
| ATAGACA | 220535 | 0.0 | 138.13257 | 2 |
| GTCGTAG | 148940 | 0.0 | 138.08238 | 1 |
| AGATGTA | 394580 | 0.0 | 137.70107 | 1 |
| CGAGTAA | 216770 | 0.0 | 137.66563 | 2 |
| GATGTAC | 394955 | 0.0 | 137.62296 | 2 |
| ATCAGCA | 220025 | 0.0 | 136.94786 | 2 |
| AGTTAGC | 102130 | 0.0 | 136.84904 | 2 |