Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR7403960_1.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 230478885 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 4506125 | 1.9551140227010384 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 3189883 | 1.384023963843803 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA | 2858036 | 1.2400424446690639 | No Hit |
| AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1346895 | 0.5843897587408061 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 1344481 | 0.583342374291684 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGGGAAAAAAAAAAAAAAAAAA | 1229130 | 0.5332939718100423 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGAAAAAAAAAAAAAAAAAAAA | 1148755 | 0.49842092910159647 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGACTGCGATAGGAATCATGTC | 322554 | 0.13994947953692155 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGGTTTGTGGGGTTTTCTTCTA | 307197 | 0.1332863962787741 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGGCAAAAAAAAAAAAAAAAAA | 291769 | 0.12659250759565244 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 271644 | 0.11786068819276004 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 252976 | 0.10976103082067583 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 238554 | 0.10350362463789253 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGTGCCCCTCATTTACATAAAT | 235512 | 0.1021837640354777 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAGCAGT | 10439680 | 0.0 | 121.21237 | 1 |
| GTATCAA | 10709325 | 0.0 | 118.64542 | 9 |
| GGTATCA | 10695845 | 0.0 | 118.54274 | 8 |
| AGCAGTG | 10678405 | 0.0 | 118.26378 | 2 |
| GTGGTAT | 10791720 | 0.0 | 117.62103 | 6 |
| AGTGGTA | 10797530 | 0.0 | 117.57005 | 5 |
| CAGTGGT | 10749795 | 0.0 | 117.49595 | 4 |
| TGGTATC | 10801915 | 0.0 | 117.34233 | 7 |
| GCAGTGG | 10864605 | 0.0 | 116.21761 | 3 |
| GTGACTG | 249790 | 0.0 | 51.460358 | 1 |
| GACTGGA | 252970 | 0.0 | 50.489212 | 3 |
| TGACTGG | 259325 | 0.0 | 49.512184 | 2 |
| AGTTCAG | 313170 | 0.0 | 41.08711 | 9 |
| ACTGGAG | 322515 | 0.0 | 39.858757 | 4 |
| TGGAGTT | 423515 | 0.0 | 30.693298 | 6 |
| CTGGAGT | 447710 | 0.0 | 29.122936 | 5 |
| GGTATAA | 84975 | 0.0 | 27.517763 | 8 |
| CATGGGG | 4129870 | 0.0 | 26.165613 | 25-29 |
| CGCAGAT | 572315 | 0.0 | 25.692703 | 90-94 |
| AAACCGC | 566200 | 0.0 | 25.564953 | 85-89 |