Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR7403961_1.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 90772425 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 12746657 | 14.042433040650836 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 1235333 | 1.3609121933230273 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 484127 | 0.5333414855888228 | No Hit |
| AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 430763 | 0.47455270694817286 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 269858 | 0.297290724578527 | No Hit |
| AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA | 237300 | 0.26142300373709304 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 206033 | 0.22697752098172985 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA | 176459 | 0.19439714208362285 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGTCAGACGTGTGCTCTTCCGA | 146772 | 0.16169227604087916 | TruSeq Adapter, Index 2 (95% over 22bp) |
| AAGCAGTGGTATCAACGCAGAGTACATGGGGGAAAAAAAAAAAAAAAAAA | 100388 | 0.11059305730787737 | No Hit |
| AGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTA | 95816 | 0.1055562854027531 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGAGCAGCCACACCTCTGCAGA | 94853 | 0.10449539053297298 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGGACAGCAGCCACACCTCTGC | 93490 | 0.10299383320430185 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAGCAGT | 8640940 | 0.0 | 63.192562 | 1 |
| AGCAGTG | 8905305 | 0.0 | 61.368027 | 2 |
| AGTGGTA | 8912065 | 0.0 | 61.343998 | 5 |
| GTATCAA | 8925030 | 0.0 | 61.268856 | 9 |
| GGTATCA | 9019165 | 0.0 | 60.615246 | 8 |
| CAGTGGT | 9088800 | 0.0 | 60.142033 | 4 |
| GCAGTGG | 9200230 | 0.0 | 59.400845 | 3 |
| TGGTATC | 9206245 | 0.0 | 59.384895 | 7 |
| GTGGTAT | 9208530 | 0.0 | 59.373367 | 6 |
| GAAACCG | 106950 | 0.0 | 23.25899 | 85-89 |
| GATAAGT | 107830 | 0.0 | 23.132298 | 95-99 |
| AAACCGC | 106830 | 0.0 | 22.944096 | 85-89 |
| CATGGGG | 1223455 | 0.0 | 22.808222 | 25-29 |
| CTACTTA | 114140 | 0.0 | 22.21859 | 135-139 |
| CGATAGG | 13210 | 0.0 | 22.128426 | 35-39 |
| CGACCTA | 27525 | 0.0 | 21.804878 | 45-49 |
| CGCAGAT | 116390 | 0.0 | 21.617823 | 90-94 |
| ATGGGGC | 370030 | 0.0 | 21.597698 | 25-29 |
| TACGCAC | 27785 | 0.0 | 21.533527 | 50-54 |
| ATGGGGG | 384025 | 0.0 | 21.415071 | 25-29 |