Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR7403965_1.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 206099572 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 40188539 | 19.499574215515594 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 2901709 | 1.4079160727223636 | No Hit |
| AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA | 967052 | 0.46921591860462475 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA | 660142 | 0.3203024604049154 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGAAAAAAAAAAAAAAAAAAAA | 425844 | 0.2066205164171811 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGCAAAAAAAAAAAAAAAAAAA | 341371 | 0.1656340169401225 | No Hit |
| AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 310452 | 0.15063204498066593 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGCACTATAGGCCCCTTATATT | 306151 | 0.14854518960379015 | No Hit |
| AGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTA | 259524 | 0.1259216588766133 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGTCAGACGTGTGCTCTTCCGA | 248032 | 0.12034571328464476 | TruSeq Adapter, Index 2 (95% over 22bp) |
| CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT | 243182 | 0.11799248180874436 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCCG | 222172 | 0.10779838009561708 | No Hit |
| CAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGT | 221361 | 0.10740488097665724 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGGGAAAAAAAAAAAAAAAAAA | 210238 | 0.10200797505780361 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAGCAGT | 28590910 | 0.0 | 72.31295 | 1 |
| AGTGGTA | 29565095 | 0.0 | 69.882835 | 5 |
| AGCAGTG | 29613530 | 0.0 | 69.75506 | 2 |
| GTATCAA | 29742155 | 0.0 | 69.45392 | 9 |
| CAGTGGT | 30128615 | 0.0 | 68.55644 | 4 |
| GGTATCA | 30176680 | 0.0 | 68.39432 | 8 |
| GCAGTGG | 30325655 | 0.0 | 68.098724 | 3 |
| TGGTATC | 30581730 | 0.0 | 67.49763 | 7 |
| GTGGTAT | 30643040 | 0.0 | 67.42513 | 6 |
| GTGACTG | 90060 | 0.0 | 23.173399 | 1 |
| ATGGGCT | 1077910 | 0.0 | 22.490423 | 25-29 |
| ATGGGGG | 938155 | 0.0 | 21.6418 | 25-29 |
| ATGGGGC | 629670 | 0.0 | 21.204205 | 25-29 |
| CATGGGC | 3817505 | 0.0 | 20.938494 | 25-29 |
| TGGGCAT | 512330 | 0.0 | 20.740652 | 25-29 |
| ATGGGGT | 836245 | 0.0 | 20.68446 | 25-29 |
| ATGGGCG | 598230 | 0.0 | 20.27847 | 25-29 |
| CATGGGG | 3672365 | 0.0 | 19.757736 | 25-29 |
| TGGGCTT | 423620 | 0.0 | 19.564228 | 25-29 |
| TGGGCTA | 314435 | 0.0 | 19.192915 | 25-29 |