Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6211736_1.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 86719651 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 13015306 | 15.00848521634387 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 1325994 | 1.529058275384434 | No Hit |
| AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 572641 | 0.6603359139441186 | No Hit |
| AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA | 165424 | 0.19075722525682212 | No Hit |
| AGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTA | 133709 | 0.15418535298302802 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 112999 | 0.13030379930841743 | No Hit |
| AGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTG | 110106 | 0.1269677618974735 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 99661 | 0.11492320235467737 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGAAGAGCACACGTCTGAACTC | 97824 | 0.11280488202149246 | Illumina Multiplexing PCR Primer 2.01 (100% over 22bp) |
| CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT | 96463 | 0.11123545688623676 | No Hit |
| CAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGT | 94961 | 0.10950343884571215 | No Hit |
| GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC | 90179 | 0.10398911776063305 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAGCAGT | 9999870 | 0.0 | 55.595333 | 1 |
| AGCAGTG | 10147870 | 0.0 | 54.67502 | 2 |
| GTATCAA | 10146950 | 0.0 | 54.61967 | 9 |
| AGTGGTA | 10160465 | 0.0 | 54.55543 | 5 |
| GGTATCA | 10249895 | 0.0 | 53.949184 | 8 |
| CAGTGGT | 10294090 | 0.0 | 53.80907 | 4 |
| GTGGTAT | 10384535 | 0.0 | 53.46887 | 6 |
| GCAGTGG | 10389005 | 0.0 | 53.403767 | 3 |
| TGGTATC | 10366900 | 0.0 | 53.39083 | 7 |
| GGTATAA | 56755 | 0.0 | 29.82909 | 8 |
| TGGTATA | 61410 | 0.0 | 27.661787 | 7 |
| TGACTGG | 67580 | 0.0 | 23.335106 | 2 |
| AGTTCAG | 69940 | 0.0 | 22.64143 | 9 |
| TGGAGTT | 73775 | 0.0 | 21.679144 | 6 |
| ATGGGGT | 212735 | 0.0 | 20.760738 | 25-29 |
| GACTGGA | 76585 | 0.0 | 20.628935 | 3 |
| ATGGGGG | 354580 | 0.0 | 20.468504 | 25-29 |
| CATGGGG | 1040085 | 0.0 | 20.43782 | 25-29 |
| GTGACTG | 80340 | 0.0 | 19.908255 | 1 |
| ATGGGGC | 208650 | 0.0 | 19.714838 | 25-29 |