Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR7403963_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 168185584 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 6722537 | 3.9970946618112047 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 3771107 | 2.242229631286353 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1809145 | 1.0756837518250078 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1018213 | 0.6054103899891919 | No Hit |
| ACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACT | 625923 | 0.3721620992201091 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 613168 | 0.36457821497947174 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 274735 | 0.1633522882674653 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 219811 | 0.1306955059834379 | No Hit |
| ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 188014 | 0.1117896049877854 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 174005 | 0.10346011582062825 | Illumina Single End PCR Primer 1 (100% over 21bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACTTCGA | 135990 | 0.0 | 135.49013 | 2 |
| ATAGCGA | 124955 | 0.0 | 135.21858 | 1 |
| GCGAGTA | 185330 | 0.0 | 135.07538 | 1 |
| ACGCTTA | 142830 | 0.0 | 134.74847 | 2 |
| GATGTAC | 239260 | 0.0 | 134.55453 | 2 |
| CGAACTT | 177375 | 0.0 | 133.72147 | 1 |
| AACATCG | 260255 | 0.0 | 133.7039 | 2 |
| CGTGAGA | 191130 | 0.0 | 133.23357 | 2 |
| ATGAATC | 138775 | 0.0 | 132.96822 | 2 |
| CGAGTAA | 187795 | 0.0 | 132.6474 | 2 |
| ATGCCTA | 163705 | 0.0 | 132.5666 | 1 |
| CTAACGA | 249030 | 0.0 | 132.29417 | 2 |
| GGCTAAC | 167160 | 0.0 | 132.24051 | 2 |
| TAGCGAC | 127835 | 0.0 | 131.98434 | 2 |
| GATAGAC | 101425 | 0.0 | 131.8503 | 1 |
| GAACTTA | 180500 | 0.0 | 131.73767 | 2 |
| TATCAGC | 130560 | 0.0 | 131.48267 | 1 |
| TAAGGTC | 142080 | 0.0 | 131.37013 | 2 |
| TAACGAT | 135800 | 0.0 | 131.29996 | 3 |
| AGTTAGC | 96025 | 0.0 | 131.17441 | 2 |