Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6211789_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 144324332 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 33 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 6104331 | 4.229592415504823 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 1921814 | 1.3315938992186016 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 1740423 | 1.2059110032811375 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1269356 | 0.8795162828122427 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 665386 | 0.46103521892621685 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTCCGTTGATA | 451153 | 0.3125966313150855 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 243662 | 0.1688294666764853 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 227265 | 0.15746825005225037 | No Hit |
| ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 218258 | 0.15122744514071265 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 186969 | 0.12954780209895586 | Illumina Single End PCR Primer 1 (100% over 21bp) |
| CCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA | 179771 | 0.12456042408704861 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAGGAGC | 697265 | 0.0 | 139.96382 | 2 |
| CAAGGAG | 697790 | 0.0 | 139.66115 | 1 |
| GGCTAAC | 239940 | 0.0 | 138.90805 | 2 |
| ATGAATC | 280955 | 0.0 | 138.53442 | 2 |
| TGGAACA | 474765 | 0.0 | 138.21022 | 1 |
| ATAGCGA | 197300 | 0.0 | 137.9495 | 1 |
| GTGTGAC | 493470 | 0.0 | 137.8442 | 5 |
| TAGCGAC | 197455 | 0.0 | 137.72322 | 2 |
| TATCAGC | 360245 | 0.0 | 137.38974 | 1 |
| AGTTAGC | 186030 | 0.0 | 137.38808 | 2 |
| TCACGCA | 347775 | 0.0 | 137.31378 | 2 |
| ATCAGCA | 360570 | 0.0 | 137.08566 | 2 |
| AGTGTGA | 553930 | 0.0 | 137.04572 | 4 |
| TCAAGTG | 656625 | 0.0 | 137.04424 | 1 |
| GATAGAC | 185025 | 0.0 | 136.7044 | 1 |
| GATGTAC | 387695 | 0.0 | 135.96481 | 2 |
| GGAACAA | 482105 | 0.0 | 135.90343 | 2 |
| CCGACAA | 240435 | 0.0 | 135.68657 | 1 |
| CGAGTAA | 213375 | 0.0 | 135.49846 | 2 |
| GCCAAGA | 350005 | 0.0 | 135.4979 | 1 |