Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6211787_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 105867299 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 4586694 | 4.332493643764351 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 1212669 | 1.1454613572412005 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 1198668 | 1.132236310288789 | No Hit |
| AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA | 983567 | 0.9290564785260084 | No Hit |
| CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 613421 | 0.5794244358685301 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCCACGTACTCTGCGTTGATA | 260949 | 0.24648687787907012 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA | 243528 | 0.23003137163251894 | Illumina Single End PCR Primer 1 (100% over 21bp) |
| CCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA | 213099 | 0.2012887851233458 | No Hit |
| CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC | 191970 | 0.18133078090525384 | No Hit |
| ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC | 141166 | 0.133342402548685 | No Hit |
| GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 127329 | 0.12027226650979356 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGAATC | 224290 | 0.0 | 139.9544 | 2 |
| ATAGCGA | 163920 | 0.0 | 139.64038 | 1 |
| TGGAACA | 392515 | 0.0 | 138.58907 | 1 |
| TATCAGC | 235560 | 0.0 | 138.0117 | 1 |
| TAGCGAC | 166305 | 0.0 | 136.99332 | 2 |
| GGCTAAC | 142875 | 0.0 | 136.55003 | 2 |
| TCACGCA | 247430 | 0.0 | 136.13191 | 2 |
| GGAACAA | 398245 | 0.0 | 135.99146 | 2 |
| CGAGTAA | 138640 | 0.0 | 135.31264 | 2 |
| AGTTAGC | 86795 | 0.0 | 134.85005 | 2 |
| GGAGAAC | 443450 | 0.0 | 134.74124 | 1 |
| CAGATTC | 160085 | 0.0 | 134.21242 | 2 |
| GATGTAC | 237850 | 0.0 | 133.97122 | 2 |
| ATCAGCA | 241930 | 0.0 | 133.65312 | 2 |
| GATAGAC | 83920 | 0.0 | 133.56488 | 1 |
| AGCACCT | 200550 | 0.0 | 133.50134 | 1 |
| TACGCAA | 92940 | 0.0 | 133.0023 | 2 |
| GGCTTCA | 210110 | 0.0 | 132.97154 | 2 |
| AGGCTAA | 147380 | 0.0 | 132.80008 | 1 |
| TTCACGC | 255160 | 0.0 | 132.73187 | 1 |