Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6211784_2.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 86305914 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 2087972 | 2.41926874211656 | No Hit |
| CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 716943 | 0.8306997362892189 | No Hit |
| AACAACCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT | 222084 | 0.25732187947166635 | No Hit |
| ACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACT | 139141 | 0.16121838417701018 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC | 109822 | 0.12724736337303605 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTCCGTTGATAC | 102351 | 0.11859094615462853 | No Hit |
| CATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTAG | 86600 | 0.10034074837559799 | Illumina Single End PCR Primer 1 (100% over 22bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CAATGGA | 456150 | 0.0 | 139.36168 | 1 |
| CAAGCTA | 210075 | 0.0 | 139.35988 | 2 |
| ACTTCGA | 164000 | 0.0 | 139.31622 | 2 |
| ACGTGAT | 182930 | 0.0 | 138.824 | 2 |
| AACGTGA | 183590 | 0.0 | 138.54549 | 1 |
| ACAAGCT | 213250 | 0.0 | 137.91064 | 1 |
| ACGCTTA | 153830 | 0.0 | 137.72636 | 2 |
| ACTAGTA | 217130 | 0.0 | 137.15683 | 2 |
| AGAGTCA | 115210 | 0.0 | 136.71352 | 1 |
| GAGTCAA | 114075 | 0.0 | 136.3873 | 2 |
| CGAACTT | 119420 | 0.0 | 136.07904 | 1 |
| ACGTATC | 112340 | 0.0 | 136.00725 | 1 |
| AAGACTA | 151020 | 0.0 | 135.94478 | 2 |
| CATCAAG | 98080 | 0.0 | 135.35432 | 1 |
| GAACTTA | 119650 | 0.0 | 135.27489 | 2 |
| GCATACA | 217740 | 0.0 | 135.20154 | 2 |
| GACTAGT | 219150 | 0.0 | 135.09491 | 1 |
| AAGCTAG | 64025 | 0.0 | 134.65146 | 3 |
| AATGGAA | 472465 | 0.0 | 134.60939 | 2 |
| CTCAATG | 148810 | 0.0 | 134.47531 | 1 |