Basic Statistics
| Measure | Value |
|---|---|
| Filename | SRR6026866_1.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 224472747 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 150 |
| %GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 29718177 | 13.239102473317175 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 4505063 | 2.0069532093354745 | No Hit |
| AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA | 697356 | 0.3106639934334657 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGTATCAACGCAGAGTACATGG | 654973 | 0.29178285950231636 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGTGGTATCAACGCAGAGTACA | 462099 | 0.20585973405493185 | No Hit |
| AGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTA | 409222 | 0.182303645083472 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGTAAGCAGTGGTATCAACGCA | 401802 | 0.17899812131759585 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGAAGAGCACACGTCTGAACTC | 382990 | 0.1706175939478301 | Illumina Multiplexing PCR Primer 2.01 (100% over 22bp) |
| AAGCAGTGGTATCAACGCAGAGTACATGGGGTATCAACGCAGAGTACATG | 355047 | 0.15816931219717287 | No Hit |
| AGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTG | 330904 | 0.14741388628348723 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 320061 | 0.1425834557992022 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGTACATGGGAAGCAGTGGTAT | 271709 | 0.121043201738873 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGCAGAGTACATGGGAAGCAGT | 262582 | 0.11697722931149411 | No Hit |
| ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGG | 235893 | 0.1050875899870375 | No Hit |
| AAGCAGTGGTATCAACGCAGAGTACATGGGGTACATGGGAAGCAGTGGTA | 234375 | 0.10441133862900516 | No Hit |
| ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA | 231385 | 0.10307932837833539 | No Hit |
| GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 230447 | 0.1026614602796303 | No Hit |
| CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT | 229584 | 0.10227700380928646 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAGCAGT | 28484715 | 0.0 | 60.298702 | 1 |
| AGTGGTA | 28913780 | 0.0 | 59.395683 | 5 |
| AGCAGTG | 29006710 | 0.0 | 59.220478 | 2 |
| CAGTGGT | 29065090 | 0.0 | 59.052826 | 4 |
| GTATCAA | 29380915 | 0.0 | 58.579678 | 9 |
| TGGTATC | 29360675 | 0.0 | 58.399956 | 7 |
| GCAGTGG | 29417020 | 0.0 | 58.332005 | 3 |
| GTGGTAT | 29442605 | 0.0 | 58.315536 | 6 |
| GGTATCA | 29527295 | 0.0 | 58.14341 | 8 |
| GTTGTAT | 199740 | 0.0 | 22.531338 | 6 |
| TTGTATC | 204470 | 0.0 | 22.144 | 7 |
| ATGGGGC | 574120 | 0.0 | 21.82053 | 25-29 |
| ATGGGCG | 241680 | 0.0 | 21.712173 | 25-29 |
| ATGGGGG | 697835 | 0.0 | 21.570417 | 25-29 |
| CATGGGG | 2754800 | 0.0 | 21.510756 | 25-29 |
| GCAGTTG | 209060 | 0.0 | 21.386662 | 3 |
| ATGGGCT | 503310 | 0.0 | 20.618383 | 25-29 |
| CATGGGC | 1898480 | 0.0 | 20.375973 | 25-29 |
| CAGTTGT | 221830 | 0.0 | 20.319897 | 4 |
| ATGGGCC | 343235 | 0.0 | 20.036713 | 25-29 |