Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391283.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 882095 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4718 | 0.5348630249576293 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3339 | 0.3785306571287673 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAGAATCTCGTATGCCGTC | 1585 | 0.17968586150017854 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAGAATCTCGTATGCC | 1379 | 0.15633236782886195 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCATA | 510 | 0.0 | 43.229465 | 24 |
| TAAGCCG | 515 | 0.0 | 42.809765 | 13 |
| ACGTCAT | 525 | 0.0 | 42.42285 | 23 |
| AGCCGAT | 525 | 0.0 | 41.99434 | 15 |
| CCGATGA | 530 | 0.0 | 41.598167 | 17 |
| CGATGAC | 540 | 0.0 | 41.24444 | 18 |
| AATTCGG | 415 | 0.0 | 41.199265 | 20 |
| GACGTCA | 540 | 0.0 | 40.827827 | 22 |
| TGACGTC | 545 | 0.0 | 40.453262 | 21 |
| AAGCCGA | 545 | 0.0 | 40.453262 | 14 |
| ATTCGGT | 430 | 0.0 | 40.285267 | 21 |
| TTCGGTA | 425 | 0.0 | 40.22987 | 22 |
| ATGACGT | 550 | 0.0 | 40.085506 | 20 |
| TATGCCG | 175 | 0.0 | 39.85177 | 43 |
| GCGGTCT | 430 | 0.0 | 39.76208 | 36 |
| AGGCGGT | 425 | 0.0 | 39.70053 | 34 |
| TCGGGGA | 435 | 0.0 | 39.305046 | 14 |
| TCGGTAT | 435 | 0.0 | 39.305046 | 23 |
| GATGACG | 565 | 0.0 | 39.02129 | 19 |
| GGCGGTC | 445 | 0.0 | 38.421787 | 35 |