Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391255.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 652438 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3887 | 0.595765421388699 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3019 | 0.4627259601678627 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCCGTC | 1258 | 0.1928152560090001 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCC | 723 | 0.1108151272611344 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 460 | 0.0 | 44.018288 | 15 |
| CGTCATA | 470 | 0.0 | 43.081734 | 24 |
| GACGTCA | 475 | 0.0 | 42.628242 | 22 |
| TGACGTC | 475 | 0.0 | 42.628242 | 21 |
| GCCGATG | 470 | 0.0 | 42.603046 | 16 |
| TAAGCCG | 470 | 0.0 | 42.603046 | 13 |
| ACGTCAT | 485 | 0.0 | 41.749306 | 23 |
| GCGGTCT | 400 | 0.0 | 41.62174 | 36 |
| GGCGGTC | 400 | 0.0 | 41.62174 | 35 |
| TCGGTAT | 400 | 0.0 | 41.62174 | 23 |
| AAGCCGA | 490 | 0.0 | 41.32329 | 14 |
| TTCCTCG | 360 | 0.0 | 41.24993 | 10 |
| TTCGGTA | 405 | 0.0 | 41.10789 | 22 |
| ATGACGT | 495 | 0.0 | 40.905884 | 20 |
| GATGACG | 495 | 0.0 | 40.905884 | 19 |
| TCGGGGA | 415 | 0.0 | 40.659466 | 14 |
| CGGGGAA | 415 | 0.0 | 40.659466 | 15 |
| CGGTCTC | 415 | 0.0 | 40.659466 | 37 |
| ATTCGGT | 410 | 0.0 | 40.606575 | 21 |
| CGATGAC | 500 | 0.0 | 40.496826 | 18 |