Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391174.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1155611 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3979 | 0.3443200177222266 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2764 | 0.2391808316120217 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1314 | 0.11370608275622161 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 415 | 0.0 | 42.28753 | 15 |
| TAAGCCG | 420 | 0.0 | 41.784103 | 13 |
| CGATGAC | 425 | 0.0 | 41.29253 | 18 |
| GCGGTCT | 360 | 0.0 | 41.2502 | 36 |
| GCCGATG | 430 | 0.0 | 40.812386 | 16 |
| CCGATGA | 435 | 0.0 | 40.343277 | 17 |
| TGACGTC | 440 | 0.0 | 39.886555 | 21 |
| CGTCATA | 445 | 0.0 | 39.438393 | 24 |
| AGGCGGT | 380 | 0.0 | 39.077442 | 34 |
| GGCGGTC | 380 | 0.0 | 39.077442 | 35 |
| GACGTCA | 450 | 0.0 | 39.000187 | 22 |
| AAGCCGA | 455 | 0.0 | 38.569946 | 14 |
| GATGACG | 455 | 0.0 | 38.569946 | 19 |
| TCGGGGA | 390 | 0.0 | 38.075455 | 14 |
| ATGACGT | 470 | 0.0 | 37.819332 | 20 |
| AATTCGG | 400 | 0.0 | 37.687683 | 20 |
| CGGTCTC | 400 | 0.0 | 37.12518 | 37 |
| ACGTCAT | 475 | 0.0 | 36.947548 | 23 |
| TCCTCGG | 330 | 0.0 | 36.81677 | 11 |
| CGGTATT | 410 | 0.0 | 36.768467 | 24 |