Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391279.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 668088 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4583 | 0.6859874747039313 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3292 | 0.49274945815521315 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCAGTATCTCGTATGCCGTC | 3002 | 0.449342002849924 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCAGTATCTCGTATGCC | 1794 | 0.2685274993713403 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1338 | 0.20027301792578225 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGATGAC | 525 | 0.0 | 42.853077 | 18 |
| CGTCATA | 520 | 0.0 | 42.399826 | 24 |
| GATGACG | 535 | 0.0 | 42.05209 | 19 |
| GCCGATG | 525 | 0.0 | 41.996014 | 16 |
| TAAGCCG | 525 | 0.0 | 41.992874 | 13 |
| CGGTATT | 370 | 0.0 | 41.955482 | 24 |
| TCGGTAT | 370 | 0.0 | 41.955482 | 23 |
| TATGCCG | 355 | 0.0 | 41.82389 | 43 |
| AGCCGAT | 530 | 0.0 | 41.599827 | 15 |
| GCGGTCT | 375 | 0.0 | 41.396076 | 36 |
| CCGATGA | 535 | 0.0 | 41.21105 | 17 |
| GACGTCA | 535 | 0.0 | 41.21105 | 22 |
| TGACGTC | 535 | 0.0 | 41.21105 | 21 |
| ATGACGT | 535 | 0.0 | 41.21105 | 20 |
| ACGTCAT | 535 | 0.0 | 41.21105 | 23 |
| TTCGGTA | 380 | 0.0 | 40.851387 | 22 |
| ATGCCGT | 365 | 0.0 | 40.678032 | 44 |
| AAGCCGA | 545 | 0.0 | 40.45185 | 14 |
| AGGCGGT | 385 | 0.0 | 40.320854 | 34 |
| TGCCGTC | 370 | 0.0 | 40.13133 | 45 |