Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391258.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 701751 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4850 | 0.691128334694215 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3429 | 0.48863485766318826 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTGTAATCTCGTATGCCGTC | 1138 | 0.16216578244990032 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 742 | 0.10573551017383659 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACGTCA | 490 | 0.0 | 43.15616 | 22 |
| TAAGCCG | 490 | 0.0 | 43.15616 | 13 |
| CGTCATA | 490 | 0.0 | 43.15616 | 24 |
| GCCGATG | 495 | 0.0 | 42.720238 | 16 |
| ACGTCAT | 495 | 0.0 | 42.720238 | 23 |
| AAGCCGA | 500 | 0.0 | 42.293034 | 14 |
| TCGGTAT | 395 | 0.0 | 41.57543 | 23 |
| AGCCGAT | 510 | 0.0 | 41.46376 | 15 |
| TGACGTC | 510 | 0.0 | 41.46376 | 21 |
| ATGACGT | 510 | 0.0 | 41.46376 | 20 |
| GAATTCG | 400 | 0.0 | 41.055737 | 19 |
| AGGCGGT | 395 | 0.0 | 41.008823 | 34 |
| TCGGGGA | 395 | 0.0 | 41.005905 | 14 |
| CCGATGA | 520 | 0.0 | 40.666378 | 17 |
| GATGACG | 520 | 0.0 | 40.666378 | 19 |
| ATTCGGT | 405 | 0.0 | 40.54888 | 21 |
| GCGGTCT | 400 | 0.0 | 40.496216 | 36 |
| GGCGGTC | 400 | 0.0 | 40.496216 | 35 |
| CGGTCTC | 410 | 0.0 | 40.05723 | 37 |
| AATTCGG | 410 | 0.0 | 40.05438 | 20 |