Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378350.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 846695 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3561 | 0.42057647677144666 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGCTTATCTCGTATGCC | 3409 | 0.40262432162703216 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATGCTTATCTCGTATGCCGTC | 3122 | 0.3687278181635654 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 415 | 0.0 | 37.949116 | 44 |
| TGCCGTC | 425 | 0.0 | 37.0562 | 45 |
| TATGCCG | 455 | 0.0 | 35.107403 | 43 |
| GATCGGA | 535 | 0.0 | 32.801414 | 26 |
| AGATCGG | 540 | 0.0 | 32.497696 | 25 |
| ATCGGAA | 540 | 0.0 | 32.497696 | 27 |
| TCGGAAG | 565 | 0.0 | 32.254353 | 28 |
| CGAGATC | 600 | 0.0 | 28.872955 | 23 |
| CCGAGAT | 610 | 0.0 | 28.399628 | 22 |
| GAGATCG | 620 | 0.0 | 28.304445 | 24 |
| AATGCCG | 1345 | 0.0 | 25.091158 | 18 |
| TGCCGAG | 1355 | 0.0 | 24.905983 | 20 |
| ATGCCGA | 1375 | 0.0 | 24.543715 | 19 |
| GAATGCC | 1445 | 0.0 | 23.666143 | 17 |
| GCCGAGA | 1455 | 0.0 | 22.884975 | 21 |
| GGAATGC | 1545 | 0.0 | 22.279974 | 16 |
| GACCGAT | 755 | 0.0 | 21.753426 | 29 |
| CGATGCT | 785 | 0.0 | 21.49529 | 32 |
| GAGACCG | 770 | 0.0 | 21.329657 | 27 |
| CCGATGC | 785 | 0.0 | 21.208687 | 31 |