Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378102.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 622275 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCCCGAATCTCGTATGCCGTC | 2002 | 0.3217227110200474 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1605 | 0.25792455104254547 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCCCGAATCTCGTATGCC | 1139 | 0.18303804588003697 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1114 | 0.17902052950865777 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCCTCGG | 155 | 0.0 | 40.650898 | 11 |
| TTCCTCG | 155 | 0.0 | 40.650898 | 10 |
| GGCGGTC | 190 | 0.0 | 40.259132 | 35 |
| TTCGGTA | 190 | 0.0 | 40.259132 | 22 |
| TCGGTAT | 190 | 0.0 | 40.259132 | 23 |
| AATTCGG | 195 | 0.0 | 39.226845 | 20 |
| CGGTATT | 195 | 0.0 | 39.226845 | 24 |
| GCGGTCT | 200 | 0.0 | 38.246174 | 36 |
| GAATTCG | 200 | 0.0 | 38.246174 | 19 |
| TATGCCG | 230 | 0.0 | 38.148357 | 43 |
| ATTCGGT | 205 | 0.0 | 37.31334 | 21 |
| TAAGCCG | 170 | 0.0 | 37.055115 | 13 |
| ATGCCGT | 240 | 0.0 | 36.558846 | 44 |
| AGGCGGT | 210 | 0.0 | 36.424927 | 34 |
| CGGTCTC | 210 | 0.0 | 36.424927 | 37 |
| AGCCGAT | 175 | 0.0 | 35.9964 | 15 |
| CCGATGA | 175 | 0.0 | 35.9964 | 17 |
| GCCGATG | 175 | 0.0 | 35.9964 | 16 |
| CTCGGGG | 175 | 0.0 | 35.9964 | 13 |
| TCGGGGA | 220 | 0.0 | 35.791874 | 14 |