Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378124.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 774867 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1685 | 0.217456673209725 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATTCCTATCTCGTATGCCGTC | 1442 | 0.18609645268155695 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTCCTATCTCGTATGCC | 1333 | 0.17202952248579434 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1213 | 0.15654299382990888 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 230 | 0.0 | 42.08248 | 45 |
| CGTCATA | 220 | 0.0 | 40.902107 | 24 |
| ATGCCGT | 240 | 0.0 | 40.30562 | 44 |
| TATGCCG | 235 | 0.0 | 40.205906 | 43 |
| AGCCGAT | 230 | 0.0 | 40.101852 | 15 |
| ACGTCAT | 230 | 0.0 | 40.101852 | 23 |
| ATGACGT | 225 | 0.0 | 39.99318 | 20 |
| GCGGTCT | 160 | 0.0 | 39.368282 | 36 |
| TGACGTC | 235 | 0.0 | 38.29134 | 21 |
| GCCGATG | 235 | 0.0 | 38.29134 | 16 |
| GATGACG | 235 | 0.0 | 38.29134 | 19 |
| TCGGGGA | 165 | 0.0 | 38.1753 | 14 |
| AATTCGG | 165 | 0.0 | 38.1753 | 20 |
| GACGTCA | 245 | 0.0 | 37.646637 | 22 |
| CGATGAC | 240 | 0.0 | 37.4936 | 18 |
| CGGTATT | 175 | 0.0 | 37.27935 | 24 |
| TTCGGTA | 170 | 0.0 | 37.052498 | 22 |
| GAATTCG | 170 | 0.0 | 37.052498 | 19 |
| TCGGTAT | 170 | 0.0 | 37.052498 | 23 |
| CGGGGAA | 180 | 0.0 | 36.243816 | 15 |