Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378356.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 904279 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2894 | 0.32003397181622045 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGTTATCTCGTATGCC | 2770 | 0.30632138974807555 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGTTATCTCGTATGCCGTC | 2424 | 0.2680588623643809 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 260 | 0.0 | 40.66723 | 43 |
| ATGCCGT | 270 | 0.0 | 39.161037 | 44 |
| TGCCGTC | 310 | 0.0 | 34.8337 | 45 |
| TCTCGAC | 40 | 1.5617368E-5 | 33.745148 | 21 |
| GATCGGA | 425 | 0.0 | 32.289474 | 26 |
| TCGGAAG | 415 | 0.0 | 31.98335 | 28 |
| AGATCGG | 455 | 0.0 | 30.1605 | 25 |
| ATCGGAA | 455 | 0.0 | 29.666065 | 27 |
| CCGAGAT | 515 | 0.0 | 27.520315 | 22 |
| AATGCCG | 915 | 0.0 | 27.045294 | 18 |
| ATGCCGA | 935 | 0.0 | 26.947996 | 19 |
| TGCCGAG | 945 | 0.0 | 26.18671 | 20 |
| GAGATCG | 540 | 0.0 | 25.829618 | 24 |
| CGAGATC | 595 | 0.0 | 23.820105 | 23 |
| GCCGAGA | 1085 | 0.0 | 22.600437 | 21 |
| GAATGCC | 1105 | 0.0 | 22.19138 | 17 |
| AGCGCTC | 65 | 4.241382E-4 | 20.766243 | 7 |
| CTCGTAT | 515 | 0.0 | 20.531029 | 39 |
| TCTCGTA | 515 | 0.0 | 20.531029 | 38 |
| GAGCGGT | 1235 | 0.0 | 20.425642 | 3 |