Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378128.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 686956 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTACCATCTCGTATGCCGTC | 2323 | 0.3381584846773301 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTACCATCTCGTATGCC | 1580 | 0.23000017468367698 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1121 | 0.1631836682407607 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 844 | 0.12286085280571099 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCATA | 135 | 0.0 | 43.327305 | 24 |
| AGCCGAT | 130 | 0.0 | 43.263214 | 15 |
| GCCGATG | 130 | 0.0 | 43.263214 | 16 |
| TAAGCCG | 130 | 0.0 | 43.263214 | 13 |
| CGGTATT | 115 | 0.0 | 41.081245 | 24 |
| CCGATGA | 140 | 0.0 | 40.17298 | 17 |
| TTCGGTA | 120 | 0.0 | 39.36952 | 22 |
| TCGGTAT | 120 | 0.0 | 39.36952 | 23 |
| TGACGTC | 155 | 0.0 | 39.1881 | 21 |
| TGCCGTC | 215 | 0.0 | 38.73246 | 45 |
| AGGCGGT | 130 | 0.0 | 38.07163 | 34 |
| GACGTCA | 155 | 0.0 | 37.736687 | 22 |
| CGATGAC | 155 | 0.0 | 37.736687 | 18 |
| AAGCCGA | 150 | 0.0 | 37.49478 | 14 |
| GGCGGTC | 135 | 0.0 | 36.661568 | 35 |
| ATGACGT | 160 | 0.0 | 36.557415 | 20 |
| ATGCCGT | 240 | 0.0 | 35.62004 | 44 |
| GCGGTCT | 140 | 0.0 | 35.352226 | 36 |
| AATTCGG | 140 | 0.0 | 35.352226 | 20 |
| TATGCCG | 240 | 0.0 | 34.68267 | 43 |