Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391179.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1224138 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4244 | 0.3466929382144824 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2861 | 0.2337154797906772 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1540 | 0.12580280981392622 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 395 | 0.0 | 41.012104 | 15 |
| CCGATGA | 405 | 0.0 | 39.99946 | 17 |
| GCCGATG | 405 | 0.0 | 39.99946 | 16 |
| CGTCATA | 410 | 0.0 | 39.511658 | 24 |
| CGATGAC | 415 | 0.0 | 39.035614 | 18 |
| TAAGCCG | 420 | 0.0 | 38.570904 | 13 |
| ACGTCAT | 435 | 0.0 | 37.758106 | 23 |
| GACGTCA | 440 | 0.0 | 37.329037 | 22 |
| ATGACGT | 435 | 0.0 | 37.24087 | 20 |
| GATGACG | 435 | 0.0 | 37.24087 | 19 |
| TATGCCG | 135 | 0.0 | 36.667664 | 43 |
| TCGGTAT | 455 | 0.0 | 36.59291 | 23 |
| CGGTATT | 460 | 0.0 | 36.19516 | 24 |
| TTCGGTA | 465 | 0.0 | 35.805965 | 22 |
| GATCGGA | 200 | 0.0 | 34.874523 | 26 |
| TGACGTC | 465 | 0.0 | 34.838238 | 21 |
| ATTCGGT | 480 | 0.0 | 34.68703 | 21 |
| AAGCCGA | 475 | 0.0 | 34.1048 | 14 |
| AATTCGG | 495 | 0.0 | 34.090446 | 20 |
| AGATCGG | 205 | 0.0 | 34.023926 | 25 |