Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378187.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 936131 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAATATCTCGTATGCC | 1562 | 0.1668569890325179 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 240 | 0.0 | 38.434853 | 41 |
| CGAGTAA | 245 | 0.0 | 37.650467 | 32 |
| ACCGAGT | 235 | 0.0 | 37.337856 | 30 |
| CTCGTAT | 250 | 0.0 | 36.89746 | 42 |
| CGACAAT | 25 | 0.0021076214 | 35.99752 | 30 |
| TATCTCG | 260 | 0.0 | 35.478325 | 39 |
| CGTATGC | 265 | 0.0 | 34.808926 | 44 |
| TCGTATG | 265 | 0.0 | 34.808926 | 43 |
| AGATCGG | 80 | 3.6379788E-12 | 33.745876 | 17 |
| GATCGGA | 80 | 3.6379788E-12 | 33.745876 | 18 |
| GACCGAG | 270 | 0.0 | 33.33104 | 29 |
| GAGACCG | 275 | 0.0 | 31.906895 | 27 |
| AGACCGA | 275 | 0.0 | 31.906895 | 28 |
| CGGTTCA | 315 | 0.0 | 30.710531 | 9 |
| GAGCGGT | 320 | 0.0 | 30.250067 | 6 |
| ATCTCGT | 305 | 0.0 | 30.24382 | 40 |
| GCGGTTC | 320 | 0.0 | 30.23068 | 8 |
| CGGAAGA | 315 | 0.0 | 30.021988 | 1 |
| TCGGAAG | 90 | 1.2732926E-11 | 29.996334 | 20 |
| CGCTTGC | 45 | 3.4930723E-5 | 29.996334 | 16 |