FastQCFastQC Report
Mon 6 Jun 2016
ERR1391361.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391361.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences856454
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA551.13259375E-732.7092718
ATCGGAA802.9875227E-622.48762319
AGATCGG855.0537637E-621.16482417
GCGGTTC951.3214458E-518.93694728
CGGTTCA1002.0553507E-517.99009929
AGCGGTT1002.0553507E-517.99009927
TCGGAAG1053.1256495E-517.13342720
AAGAGCG1104.6571855E-516.35463524
AGAGCGG1104.6571855E-516.35463525
ACGGGAT850.002573879415.87361713
GAGCGGT1156.811211E-515.64356426
CCTTCGT1301.0697833E-515.6313221
ATGCCGA1301.1108992E-515.56926442
CGGAAGA1301.1115142E-515.56835621
CCGAGAC1351.5879854E-514.99262445
TGCCGAG1453.116943E-513.9586543
TCGTTGG1951.7508864E-713.8945084
CGTTGGA1801.0781005E-613.7980185
AAACGGG1851.5358164E-613.37101811
AATGCCG1555.833267E-513.05809141