Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378177.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 905305 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCTGAATCTCGTATGCC | 2626 | 0.29006798813659485 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 320 | 0.0 | 43.59589 | 41 |
| CTCGTAT | 330 | 0.0 | 42.274803 | 42 |
| CCGAGCT | 345 | 0.0 | 39.782364 | 31 |
| CGAGCTG | 345 | 0.0 | 39.782364 | 32 |
| AAGAGCG | 355 | 0.0 | 39.30639 | 4 |
| CGTATGC | 355 | 0.0 | 39.295532 | 44 |
| TCGTATG | 360 | 0.0 | 38.749763 | 43 |
| GCGGTTC | 360 | 0.0 | 38.745483 | 8 |
| CGGAAGA | 370 | 0.0 | 38.333866 | 1 |
| ATCTCGT | 365 | 0.0 | 38.221054 | 40 |
| ACCGAGC | 360 | 0.0 | 38.122658 | 30 |
| AGAGCGG | 370 | 0.0 | 37.712887 | 5 |
| AATCTCG | 375 | 0.0 | 37.201828 | 39 |
| GAGACCG | 370 | 0.0 | 37.09232 | 27 |
| CGGTTCA | 385 | 0.0 | 36.81389 | 9 |
| GACCGAG | 375 | 0.0 | 36.599777 | 29 |
| GAGCGGT | 385 | 0.0 | 36.243553 | 6 |
| AATGCCG | 400 | 0.0 | 34.870934 | 21 |
| AGACCGA | 395 | 0.0 | 34.74662 | 28 |
| CCGAGAC | 405 | 0.0 | 34.44233 | 25 |