FastQCFastQC Report
Mon 6 Jun 2016
ERR1378318.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378318.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476522
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTCAAATCTCGTATGCC38340.8045798515073807Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT33410.7011218789478765Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTCAAATCTCGTATGCCGTC31150.6536948976122823Illumina Paired End PCR Primer 2 (96% over 32bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC6130.12864044052530627Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4050.038.88680343
TGCCGTC4100.038.41257545
TCTTCCG250.002106428135.9980718
ATGCCGT4400.035.79353344
ATCGGAA4800.032.34201427
TTCCGAT352.8188017E-432.14113620
AGATCGG4850.032.00859525
GATCGGA4900.031.68197426
TCGGAAG5150.031.45462228
CCGAGAT5150.030.14401422
GGGGGCG300.00513770330.0078356
AACCGCT300.005145619629.99838812
CCGATGA300.005145619629.99838822
ACTCGAC300.005145619629.99838840
GAGATCG5300.029.29088224
CGAGATC5350.029.01713423
AATGCCG12800.024.95959918
ATGCCGA13100.024.38800619
TGCCGAG13100.024.38800620
GCCGAGA13350.023.59423821