Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378550.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 305469 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATAGATCTCGTATGCC | 1594 | 0.5218205448016002 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGCATA | 215 | 0.0 | 42.905884 | 32 |
| GAGACCG | 215 | 0.0 | 41.859398 | 27 |
| AGACCGG | 215 | 0.0 | 41.859398 | 28 |
| GAGCGGT | 225 | 0.0 | 41.00567 | 6 |
| CCGGCAT | 225 | 0.0 | 40.998955 | 31 |
| GACCGGC | 220 | 0.0 | 40.908047 | 29 |
| AGAGCGG | 230 | 0.0 | 40.114243 | 5 |
| CTCGTAT | 230 | 0.0 | 40.107674 | 42 |
| CGGTTCA | 230 | 0.0 | 40.107674 | 9 |
| CCGAGAC | 220 | 0.0 | 39.885345 | 25 |
| AGCGGTT | 240 | 0.0 | 39.380444 | 7 |
| CGTATGC | 235 | 0.0 | 39.25432 | 44 |
| TCTCGTA | 235 | 0.0 | 39.25432 | 41 |
| TCGTATG | 235 | 0.0 | 39.25432 | 43 |
| CGAGACC | 225 | 0.0 | 38.999004 | 26 |
| GCGGTTC | 240 | 0.0 | 38.442814 | 8 |
| ATCTCGT | 240 | 0.0 | 38.436523 | 40 |
| ACCGGCA | 240 | 0.0 | 38.436523 | 30 |
| GTATGCC | 245 | 0.0 | 37.6521 | 45 |
| ATGCCGA | 255 | 0.0 | 37.05788 | 22 |