Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378178.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 795271 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTGAATCTCGTATGCC | 4637 | 0.5830716824830781 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 811 | 0.10197781636699943 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 525 | 0.0 | 38.999077 | 44 |
| ATCTCGT | 525 | 0.0 | 38.570515 | 40 |
| GAGACCG | 530 | 0.0 | 38.204235 | 27 |
| TCGTATG | 545 | 0.0 | 37.980747 | 43 |
| CCGCAGT | 540 | 0.0 | 37.915764 | 31 |
| TCTCGTA | 535 | 0.0 | 37.849567 | 41 |
| GACCGCA | 540 | 0.0 | 37.49675 | 29 |
| CTCGTAT | 550 | 0.0 | 37.226387 | 42 |
| AGACCGC | 545 | 0.0 | 37.152744 | 28 |
| AATCTCG | 560 | 0.0 | 36.15986 | 39 |
| ACCGCAG | 575 | 0.0 | 35.60561 | 30 |
| AGCGGTT | 625 | 0.0 | 34.91478 | 7 |
| GCGGTTC | 615 | 0.0 | 34.7509 | 8 |
| AAGAGCG | 610 | 0.0 | 34.68876 | 4 |
| CGGAAGA | 600 | 0.0 | 34.52958 | 1 |
| CGCAGTG | 610 | 0.0 | 33.93362 | 32 |
| GTATGCC | 615 | 0.0 | 33.657738 | 45 |
| GAGCGGT | 635 | 0.0 | 33.32096 | 6 |
| AGAGCGG | 635 | 0.0 | 33.32096 | 5 |
| GATCGGA | 75 | 4.7293724E-11 | 32.995068 | 18 |