Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378536.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 421382 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTATGATCTCGTATGCC | 1533 | 0.3638029151696086 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCGGTT | 215 | 0.0 | 42.906754 | 7 |
| AGAGCGG | 215 | 0.0 | 42.906754 | 5 |
| CGGTTCA | 210 | 0.0 | 42.85692 | 9 |
| AGACCGT | 205 | 0.0 | 42.80465 | 28 |
| GCGGTTC | 215 | 0.0 | 41.860245 | 8 |
| AATGCCG | 215 | 0.0 | 41.860245 | 21 |
| AAGAGCG | 230 | 0.0 | 41.08674 | 4 |
| GAGCGGT | 225 | 0.0 | 40.999786 | 6 |
| ATGCCGA | 220 | 0.0 | 40.908875 | 22 |
| GACCGTC | 215 | 0.0 | 40.81374 | 29 |
| GAGACCG | 215 | 0.0 | 40.81374 | 27 |
| TGCCGAG | 215 | 0.0 | 40.81374 | 23 |
| CGGAAGA | 225 | 0.0 | 40.00454 | 1 |
| CTCGTAT | 220 | 0.0 | 39.886154 | 42 |
| CGTATGC | 215 | 0.0 | 39.767235 | 44 |
| CCGAGAC | 215 | 0.0 | 39.767235 | 25 |
| TCGTATG | 215 | 0.0 | 39.767235 | 43 |
| CCGTCTA | 225 | 0.0 | 38.999794 | 31 |
| ACCGTCT | 235 | 0.0 | 37.340225 | 30 |
| TCTCGTA | 230 | 0.0 | 37.173717 | 41 |