Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378537.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 297061 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTATCATCTCGTATGCC | 1620 | 0.5453425390744662 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGTATG | 210 | 0.0 | 42.857143 | 43 |
| CGTATGC | 215 | 0.0 | 41.860466 | 44 |
| CTCGTAT | 215 | 0.0 | 41.860466 | 42 |
| TCTCGTA | 215 | 0.0 | 41.860466 | 41 |
| GACCGTG | 210 | 0.0 | 41.785713 | 29 |
| CCGTGTA | 210 | 0.0 | 41.785713 | 31 |
| AGACCGT | 210 | 0.0 | 41.785713 | 28 |
| CCGAGAC | 220 | 0.0 | 39.886364 | 25 |
| ATCTCGT | 240 | 0.0 | 39.374996 | 40 |
| CGTGTAT | 230 | 0.0 | 39.130436 | 32 |
| ACCGTGT | 225 | 0.0 | 39.0 | 30 |
| AGCGGTT | 240 | 0.0 | 38.437496 | 7 |
| GCGGTTC | 245 | 0.0 | 37.65306 | 8 |
| CGGTTCA | 245 | 0.0 | 37.65306 | 9 |
| GAGCGGT | 245 | 0.0 | 37.65306 | 6 |
| AGAGCGG | 245 | 0.0 | 37.65306 | 5 |
| GAGACCG | 235 | 0.0 | 37.340427 | 27 |
| CGGAAGA | 230 | 0.0 | 37.173916 | 1 |
| CATCTCG | 250 | 0.0 | 36.9 | 39 |
| GTGTATC | 250 | 0.0 | 36.000004 | 33 |