Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378467.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 726792 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCCGTC | 1610 | 0.22152142566236283 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCC | 1456 | 0.20033241972944116 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 190 | 0.0 | 35.528164 | 43 |
| ATGCCGT | 230 | 0.0 | 31.305975 | 44 |
| TGCCGTC | 230 | 0.0 | 31.305975 | 45 |
| CCACGGA | 50 | 0.0022604172 | 22.505816 | 3 |
| GATCGGA | 135 | 8.367351E-11 | 21.66481 | 26 |
| AGATCGG | 145 | 2.1827873E-10 | 20.170685 | 25 |
| CGGTTCA | 515 | 0.0 | 19.665276 | 6 |
| TCTCGTA | 355 | 0.0 | 19.646206 | 38 |
| TCGGAAG | 150 | 3.43789E-10 | 19.498331 | 28 |
| CTCGTAT | 350 | 0.0 | 19.284063 | 39 |
| AGCGGTT | 540 | 0.0 | 19.17162 | 4 |
| AATGCCG | 540 | 0.0 | 19.165026 | 18 |
| CGTATGC | 355 | 0.0 | 19.013765 | 41 |
| TCGTATG | 355 | 0.0 | 19.013765 | 40 |
| CGGAAGA | 345 | 0.0 | 18.92705 | 1 |
| ATCGGAA | 155 | 5.329639E-10 | 18.869352 | 27 |
| GCGGTTC | 540 | 0.0 | 18.754845 | 5 |
| GAGCGGT | 540 | 0.0 | 18.754845 | 3 |
| TGCCGAG | 530 | 0.0 | 18.677647 | 20 |
| AAGAGCG | 545 | 0.0 | 18.59174 | 1 |