Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378183.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 658387 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCAGTAATCTCGTATGCC | 1361 | 0.20671732582812236 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 230 | 0.0 | 42.068913 | 41 |
| CGTATGC | 220 | 0.0 | 41.9355 | 44 |
| AGACCGG | 215 | 0.0 | 40.814438 | 28 |
| ATCTCGT | 240 | 0.0 | 40.31604 | 40 |
| CGGCAGT | 230 | 0.0 | 40.11222 | 32 |
| ACCGGCA | 230 | 0.0 | 40.106125 | 30 |
| GAGACCG | 220 | 0.0 | 39.886837 | 27 |
| CCGGCAG | 235 | 0.0 | 39.258766 | 31 |
| GACCGGC | 225 | 0.0 | 39.00046 | 29 |
| CTCGTAT | 250 | 0.0 | 38.7034 | 42 |
| GAGCGGT | 245 | 0.0 | 36.7435 | 6 |
| AGCGGTC | 25 | 0.0021063336 | 36.000423 | 26 |
| CCGAGAC | 245 | 0.0 | 35.81675 | 25 |
| AGAGCGG | 255 | 0.0 | 35.30258 | 5 |
| AAGAGCG | 275 | 0.0 | 35.190254 | 4 |
| TCGTATG | 265 | 0.0 | 34.81173 | 43 |
| GCGGTTC | 260 | 0.0 | 34.607906 | 8 |
| AATCTCG | 270 | 0.0 | 34.169666 | 39 |
| CGGTTCA | 265 | 0.0 | 33.954926 | 9 |
| AGCGGTT | 270 | 0.0 | 33.326134 | 7 |