Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391185.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1122865 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2777 | 0.24731379106125848 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1988 | 0.17704710717673094 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1217 | 0.10838346551010139 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 290 | 0.0 | 40.34419 | 13 |
| GCCGATG | 305 | 0.0 | 39.097744 | 16 |
| CCGATGA | 320 | 0.0 | 37.968147 | 17 |
| AGCCGAT | 310 | 0.0 | 37.74134 | 15 |
| CGTCATA | 315 | 0.0 | 37.14227 | 24 |
| CGATGAC | 320 | 0.0 | 36.56192 | 18 |
| GCGGTCT | 260 | 0.0 | 36.345577 | 36 |
| GACGTCA | 325 | 0.0 | 35.99943 | 22 |
| AAGCCGA | 325 | 0.0 | 35.99943 | 14 |
| GGCGGTC | 265 | 0.0 | 35.65981 | 35 |
| AATTCGG | 265 | 0.0 | 35.65981 | 20 |
| ATGACGT | 330 | 0.0 | 35.453987 | 20 |
| ACGTCAT | 330 | 0.0 | 35.453987 | 23 |
| GATGACG | 330 | 0.0 | 35.453987 | 19 |
| TCGGTAT | 270 | 0.0 | 34.999447 | 23 |
| GAATTCG | 275 | 0.0 | 34.363094 | 19 |
| CGGGGAA | 285 | 0.0 | 33.94683 | 15 |
| TGACGTC | 345 | 0.0 | 33.912506 | 21 |
| ATTCGGT | 295 | 0.0 | 32.033394 | 21 |
| CGGTATT | 295 | 0.0 | 32.033394 | 24 |