FastQCFastQC Report
Mon 6 Jun 2016
ERR1378551.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378551.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences230328
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACTAGATCTCGTATGCC26811.1639922197909067Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC2890.12547323816470424Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGGA2600.043.2681929
AGACCGG2600.043.2681928
GGACTAG2700.042.49897433
ACCGGAC2650.042.45180530
CCGGACT2650.042.45180531
TCTCGTA2650.042.45180541
TCGTATG2650.042.45180543
CGGACTA2650.042.45180532
CGTATGC2700.041.6656644
CTCGTAT2700.041.6656642
GAGACCG2700.041.6656627
CTAGATC2800.040.98115536
ACTAGAT2850.040.26218835
GACTAGA2850.040.26218834
ATCTCGT2850.039.47273340
GATCTCG2850.039.47273339
GTATGCC2950.038.8973745
CCGAGAC2950.038.8973725
CGAGACC2900.038.79216826
GAGCGGT3000.038.2490776