Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378136.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1227854 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCC | 1880 | 0.1531126664896641 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCGTA | 175 | 0.0 | 43.715 | 32 |
| CCGTCGT | 185 | 0.0 | 40.135788 | 31 |
| GCGGTTC | 200 | 0.0 | 39.372433 | 8 |
| ACCGTCG | 190 | 0.0 | 39.0764 | 30 |
| GTCGTAT | 200 | 0.0 | 38.25062 | 33 |
| GACCGTC | 200 | 0.0 | 37.12258 | 29 |
| AGCGGTT | 225 | 0.0 | 36.99759 | 7 |
| TATCTCG | 205 | 0.0 | 36.220104 | 39 |
| AGACCGT | 220 | 0.0 | 33.7478 | 28 |
| CGTATGC | 230 | 0.0 | 33.260056 | 44 |
| GAGCGGT | 250 | 0.0 | 32.404488 | 6 |
| CGTATAT | 230 | 0.0 | 32.283134 | 35 |
| TCGTATG | 230 | 0.0 | 32.28182 | 43 |
| AGAGCGG | 245 | 0.0 | 32.14731 | 5 |
| TCTCGTA | 235 | 0.0 | 31.594973 | 41 |
| GAGACCG | 235 | 0.0 | 31.593685 | 27 |
| ATCTCGT | 240 | 0.0 | 30.938007 | 40 |
| CTCGTAT | 240 | 0.0 | 30.936745 | 42 |
| CGGTTCA | 255 | 0.0 | 30.880339 | 9 |
| ATGCCGA | 250 | 0.0 | 30.599253 | 22 |