Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391186.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 862198 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3169 | 0.3675489852678851 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2166 | 0.25121839763024273 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 940 | 0.10902368133537772 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGATGAC | 330 | 0.0 | 40.90798 | 18 |
| TTCGGTA | 245 | 0.0 | 40.407066 | 22 |
| AGCCGAT | 340 | 0.0 | 40.366554 | 15 |
| TAAGCCG | 340 | 0.0 | 39.704807 | 13 |
| CCGATGA | 350 | 0.0 | 39.213223 | 17 |
| GCCGATG | 350 | 0.0 | 39.213223 | 16 |
| CGGTATT | 260 | 0.0 | 38.941254 | 24 |
| ATTCGGT | 255 | 0.0 | 38.82248 | 21 |
| GCGGTCT | 250 | 0.0 | 38.69895 | 36 |
| GGCGGTC | 250 | 0.0 | 38.69895 | 35 |
| TCGGTAT | 260 | 0.0 | 38.075893 | 23 |
| GACGTCA | 365 | 0.0 | 37.601723 | 22 |
| TGACGTC | 365 | 0.0 | 37.601723 | 21 |
| GATGACG | 365 | 0.0 | 36.9853 | 19 |
| ATGACGT | 375 | 0.0 | 36.59901 | 20 |
| AAGCCGA | 385 | 0.0 | 36.232784 | 14 |
| CAGGCGG | 275 | 0.0 | 35.999023 | 33 |
| CTCGGGG | 190 | 0.0 | 35.525356 | 13 |
| CGTCATA | 380 | 0.0 | 35.525356 | 24 |
| ACGTCAT | 385 | 0.0 | 35.063984 | 23 |