Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378119.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 726176 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGGTTTATCTCGTATGCCGTC | 1689 | 0.23258824307055037 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1232 | 0.16965584100824044 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGGTTTATCTCGTATGCC | 1196 | 0.16469836513462302 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 899 | 0.12379918917727933 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GGCGGTC | 145 | 0.0 | 40.34205 | 35 |
| GACGTCA | 155 | 0.0 | 39.190853 | 22 |
| TGACGTC | 155 | 0.0 | 39.190853 | 21 |
| GCCGATG | 140 | 0.0 | 38.568775 | 16 |
| CGATGAC | 140 | 0.0 | 38.568775 | 18 |
| TTCGGTA | 160 | 0.0 | 37.966137 | 22 |
| ATGACGT | 150 | 0.0 | 37.497417 | 20 |
| AGCCGAT | 145 | 0.0 | 37.238815 | 15 |
| CCGATGA | 145 | 0.0 | 37.238815 | 17 |
| GCGGTCT | 160 | 0.0 | 36.559982 | 36 |
| GAATTCG | 160 | 0.0 | 36.559982 | 19 |
| TCGGTAT | 160 | 0.0 | 36.559982 | 23 |
| ATGCCGT | 280 | 0.0 | 36.158226 | 44 |
| TGCCGTC | 275 | 0.0 | 36.0 | 45 |
| CGGTATT | 170 | 0.0 | 35.732834 | 24 |
| CGTCATA | 160 | 0.0 | 35.15383 | 24 |
| CTCGGGG | 135 | 0.0 | 34.99759 | 13 |
| TAAGCCG | 155 | 0.0 | 34.83631 | 13 |
| TATGCCG | 285 | 0.0 | 34.73445 | 43 |
| ATTCGGT | 175 | 0.0 | 34.711895 | 21 |