Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391267.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 600372 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4103 | 0.6834096193693243 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2845 | 0.4738728654900628 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCCGTC | 960 | 0.15990086146589116 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCC | 875 | 0.14574297269026537 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGATGAC | 360 | 0.0 | 43.11957 | 18 |
| AGCCGAT | 355 | 0.0 | 43.093166 | 15 |
| AAGCCGA | 355 | 0.0 | 43.093166 | 14 |
| TAAGCCG | 355 | 0.0 | 43.093166 | 13 |
| CCGATGA | 370 | 0.0 | 41.954178 | 17 |
| GCCGATG | 370 | 0.0 | 41.954178 | 16 |
| ATGACGT | 365 | 0.0 | 41.912533 | 20 |
| GATGACG | 370 | 0.0 | 41.34615 | 19 |
| GACGTCA | 365 | 0.0 | 41.296173 | 22 |
| CGGGGAA | 330 | 0.0 | 40.903942 | 15 |
| ACGTCAT | 370 | 0.0 | 40.738117 | 23 |
| CGTCATA | 380 | 0.0 | 40.25809 | 24 |
| TCCTCGG | 305 | 0.0 | 39.850967 | 11 |
| TGACGTC | 385 | 0.0 | 39.73526 | 21 |
| AATTCGG | 340 | 0.0 | 39.700886 | 20 |
| CGGTATT | 340 | 0.0 | 39.700886 | 24 |
| GGCGGTC | 345 | 0.0 | 39.12551 | 35 |
| GAATTCG | 345 | 0.0 | 39.12551 | 19 |
| GCGGTCT | 350 | 0.0 | 38.56657 | 36 |
| TTCGGTA | 350 | 0.0 | 38.56657 | 22 |