Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378226.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 696340 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3829 | 0.5498750610334032 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTAGAATCTCGTATGCCGTC | 2042 | 0.29324755148347076 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTAGAATCTCGTATGCC | 1626 | 0.23350662032914954 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATCGGAA | 505 | 0.0 | 35.197178 | 27 |
| TATGCCG | 310 | 0.0 | 34.837875 | 43 |
| AGATCGG | 520 | 0.0 | 34.61456 | 25 |
| GATCGGA | 525 | 0.0 | 34.284893 | 26 |
| TCGGAAG | 560 | 0.0 | 32.94564 | 28 |
| ATGCCGT | 345 | 0.0 | 31.955757 | 44 |
| TGCCGTC | 345 | 0.0 | 31.955757 | 45 |
| CCGAGAT | 600 | 0.0 | 30.749262 | 22 |
| AATGCCG | 1040 | 0.0 | 28.989693 | 18 |
| TGCCGAG | 1045 | 0.0 | 28.850985 | 20 |
| GAGATCG | 625 | 0.0 | 28.799309 | 24 |
| CGAGATC | 630 | 0.0 | 28.570745 | 23 |
| ATGCCGA | 1060 | 0.0 | 28.442715 | 19 |
| CGCGTAG | 415 | 0.0 | 26.565628 | 29 |
| GCCGAGA | 1125 | 0.0 | 26.399368 | 21 |
| GAATGCC | 1140 | 0.0 | 26.249372 | 17 |
| CCGCGTA | 425 | 0.0 | 25.940557 | 28 |
| GGAATGC | 1150 | 0.0 | 25.825468 | 16 |
| ACCGCGT | 445 | 0.0 | 24.774687 | 27 |
| TCGTATG | 445 | 0.0 | 24.774687 | 40 |