Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378349.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1135675 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4465 | 0.39315825390186454 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACCTAATCTCGTATGCC | 4206 | 0.3703524335747463 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACCTAATCTCGTATGCCGTC | 3436 | 0.30255134611574613 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 445 | 0.0 | 37.411007 | 44 |
| TATGCCG | 455 | 0.0 | 37.083233 | 43 |
| TGCCGTC | 460 | 0.0 | 36.191082 | 45 |
| AGATCGG | 590 | 0.0 | 35.84293 | 25 |
| GATCGGA | 610 | 0.0 | 34.667755 | 26 |
| ATCGGAA | 620 | 0.0 | 34.471455 | 27 |
| CCGAGAT | 675 | 0.0 | 31.662668 | 22 |
| TCGGAAG | 720 | 0.0 | 30.308672 | 28 |
| GAGATCG | 720 | 0.0 | 29.37129 | 24 |
| CGAGATC | 735 | 0.0 | 28.771877 | 23 |
| AATGCCG | 1545 | 0.0 | 25.045383 | 18 |
| TGCCGAG | 1540 | 0.0 | 24.980614 | 20 |
| ATGCCGA | 1560 | 0.0 | 24.948772 | 19 |
| GCCGAGA | 1610 | 0.0 | 23.754765 | 21 |
| GAATGCC | 1690 | 0.0 | 23.295876 | 17 |
| GGAATGC | 1885 | 0.0 | 21.124653 | 16 |
| CTCGTAT | 865 | 0.0 | 20.54654 | 42 |
| TCTCGTA | 870 | 0.0 | 20.428457 | 41 |
| ACCGTAC | 890 | 0.0 | 20.222166 | 30 |
| CCGTACC | 885 | 0.0 | 20.08221 | 31 |