Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378190.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 620674 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAAGATATCTCGTATGCC | 1135 | 0.1828657233910233 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 135 | 0.0 | 40.00179 | 44 |
| TCGTATG | 145 | 0.0 | 37.243046 | 43 |
| GACCGTA | 140 | 0.0 | 36.96296 | 29 |
| GCCCGAG | 25 | 0.0021059006 | 36.001614 | 33 |
| CTCGTAT | 150 | 0.0 | 36.00161 | 42 |
| TATCTCG | 150 | 0.0 | 36.00161 | 39 |
| TCTCGTA | 150 | 0.0 | 36.00161 | 41 |
| AGACCGT | 150 | 0.0 | 34.498764 | 28 |
| CCGTAAG | 165 | 0.0 | 32.728737 | 31 |
| AACGACT | 35 | 2.8181518E-4 | 32.144295 | 41 |
| GACCGAG | 35 | 2.8208178E-4 | 32.139114 | 13 |
| ATCTCGT | 170 | 0.0 | 31.766129 | 40 |
| GCGGTTC | 170 | 0.0 | 31.76101 | 8 |
| AGCGGTT | 170 | 0.0 | 31.76101 | 7 |
| CGGAAGA | 165 | 0.0 | 31.377684 | 1 |
| GAGCGGT | 175 | 0.0 | 30.863497 | 6 |
| ACCGTAA | 175 | 0.0 | 30.856037 | 30 |
| GAGACCG | 170 | 0.0 | 30.440088 | 27 |
| AGAGCGG | 180 | 0.0 | 30.006176 | 5 |
| GCGGATC | 30 | 0.0051443283 | 30.001343 | 35 |