Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378567.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 333527 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAGAATCTCGTATGCC | 1503 | 0.4506381792178744 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGTC | 170 | 0.0 | 42.351814 | 29 |
| CCGTCGA | 170 | 0.0 | 42.351814 | 31 |
| ACCGTCG | 170 | 0.0 | 42.351814 | 30 |
| ATCTCGT | 180 | 0.0 | 41.248898 | 40 |
| GTCGAGA | 175 | 0.0 | 41.14176 | 33 |
| GAGACCG | 175 | 0.0 | 41.14176 | 27 |
| AGACCGT | 175 | 0.0 | 41.14176 | 28 |
| CGTATGC | 180 | 0.0 | 39.99893 | 44 |
| TCGTATG | 180 | 0.0 | 39.99893 | 43 |
| CGTCGAG | 180 | 0.0 | 39.99893 | 32 |
| TCTCGTA | 185 | 0.0 | 38.917885 | 41 |
| AGAGCGG | 205 | 0.0 | 37.31608 | 5 |
| CTCGTAT | 195 | 0.0 | 36.922092 | 42 |
| CGGTTCA | 205 | 0.0 | 36.218544 | 9 |
| AGCGGTT | 205 | 0.0 | 36.218544 | 7 |
| GAGCGGT | 205 | 0.0 | 36.218544 | 6 |
| TCGAGAA | 200 | 0.0 | 35.999043 | 34 |
| GCGGTTC | 210 | 0.0 | 35.3562 | 8 |
| GTATGCC | 205 | 0.0 | 35.121014 | 45 |
| CCGAGAC | 205 | 0.0 | 35.121014 | 25 |