Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378488.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 531290 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAGAATCTCGTATGCCGTC | 3376 | 0.6354345084605395 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAGAATCTCGTATGCC | 2409 | 0.45342468331796193 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1868 | 0.35159705622164916 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 744 | 0.14003651489770183 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 415 | 0.0 | 41.210423 | 43 |
| ATGCCGT | 460 | 0.0 | 37.178967 | 44 |
| TGCCGTC | 470 | 0.0 | 36.387924 | 45 |
| ATTGCCG | 30 | 0.005146111 | 29.998432 | 27 |
| CGGCTAG | 680 | 0.0 | 25.479006 | 29 |
| CTCGTAT | 675 | 0.0 | 25.332008 | 39 |
| TCTCGTA | 675 | 0.0 | 25.332008 | 38 |
| CGTATGC | 685 | 0.0 | 24.962196 | 41 |
| GTATGCC | 690 | 0.0 | 24.783646 | 42 |
| TCGTATG | 690 | 0.0 | 24.781313 | 40 |
| ACCGGCT | 705 | 0.0 | 24.573183 | 27 |
| CCGGCTA | 720 | 0.0 | 24.37602 | 28 |
| AGACCGG | 715 | 0.0 | 24.22722 | 25 |
| ATCTCGT | 710 | 0.0 | 24.083246 | 37 |
| AATCTCG | 720 | 0.0 | 23.748758 | 36 |
| GAGACCG | 735 | 0.0 | 23.567978 | 24 |
| GCTAGAA | 760 | 0.0 | 23.093071 | 31 |
| GGCTAGA | 770 | 0.0 | 22.793163 | 30 |
| AATGCCG | 1195 | 0.0 | 22.026064 | 18 |
| GACCGGC | 790 | 0.0 | 21.92717 | 26 |