Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378240.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1060306 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4781 | 0.4509075681925784 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACTAAATCTCGTATGCC | 3083 | 0.29076511874873856 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAACTAAATCTCGTATGCCGTC | 3015 | 0.2843518757792562 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGATCGG | 750 | 0.0 | 35.39848 | 25 |
| GATCGGA | 765 | 0.0 | 34.998497 | 26 |
| TATGCCG | 345 | 0.0 | 34.563732 | 43 |
| ATCGGAA | 790 | 0.0 | 34.175747 | 27 |
| TCGGAAG | 870 | 0.0 | 32.06759 | 28 |
| GAGATCG | 880 | 0.0 | 30.42483 | 24 |
| ATGCCGT | 385 | 0.0 | 30.388306 | 44 |
| CGAGATC | 885 | 0.0 | 30.25294 | 23 |
| TGCCGTC | 390 | 0.0 | 29.998713 | 45 |
| CCGAGAT | 920 | 0.0 | 29.10201 | 22 |
| ATGCCGA | 1430 | 0.0 | 27.848455 | 19 |
| AATGCCG | 1470 | 0.0 | 27.243727 | 18 |
| TGCCGAG | 1480 | 0.0 | 26.755606 | 20 |
| GCCGAGA | 1585 | 0.0 | 24.415354 | 21 |
| GAATGCC | 1660 | 0.0 | 24.396542 | 17 |
| CGGAAGA | 1170 | 0.0 | 23.845129 | 29 |
| GGAATGC | 1790 | 0.0 | 22.499033 | 16 |
| TGAACCG | 70 | 2.7036356E-5 | 22.499033 | 10 |
| GAAGAGC | 1380 | 0.0 | 20.379559 | 31 |
| CGAACTA | 605 | 0.0 | 20.081781 | 29 |