Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378216.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1119853 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 7044 | 0.6290111291392709 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTGAGATCTCGTATGCCGTC | 3631 | 0.3242389849382017 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTGAGATCTCGTATGCC | 2696 | 0.24074588361150973 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 490 | 0.0 | 38.571125 | 43 |
| ATGCCGT | 495 | 0.0 | 37.726974 | 44 |
| TGCCGTC | 495 | 0.0 | 37.27243 | 45 |
| AGATCGG | 920 | 0.0 | 35.704647 | 25 |
| GATCGGA | 930 | 0.0 | 35.320724 | 26 |
| ATCGGAA | 920 | 0.0 | 35.21554 | 27 |
| TCGGAAG | 995 | 0.0 | 33.465576 | 28 |
| CCGAGAT | 1090 | 0.0 | 30.34244 | 22 |
| CGAGATC | 1110 | 0.0 | 29.79573 | 23 |
| GAGATCG | 1110 | 0.0 | 29.79573 | 24 |
| AATGCCG | 1785 | 0.0 | 29.62029 | 18 |
| TGCCGAG | 1780 | 0.0 | 29.577097 | 20 |
| ATGCCGA | 1820 | 0.0 | 28.80343 | 19 |
| GAATGCC | 1975 | 0.0 | 26.770744 | 17 |
| GCCGAGA | 1950 | 0.0 | 26.652447 | 21 |
| CGGAAGA | 1290 | 0.0 | 25.638187 | 29 |
| TCTCGTA | 760 | 0.0 | 24.867113 | 38 |
| CTCGTAT | 765 | 0.0 | 24.705687 | 39 |
| GACCGTG | 765 | 0.0 | 24.704582 | 26 |
| GAGACCG | 770 | 0.0 | 24.544165 | 24 |