Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391187.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 619188 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2501 | 0.40391609656517896 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1734 | 0.280044186902847 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1014 | 0.163762863621388 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 225 | 0.0 | 42.998302 | 15 |
| GCGGTCT | 255 | 0.0 | 42.351265 | 36 |
| CCGATGA | 225 | 0.0 | 41.998344 | 17 |
| TCGGTAT | 275 | 0.0 | 41.725624 | 23 |
| GGCGGTC | 260 | 0.0 | 41.536823 | 35 |
| ACGTCAT | 235 | 0.0 | 41.168587 | 23 |
| TAAGCCG | 235 | 0.0 | 41.168587 | 13 |
| GACGTCA | 230 | 0.0 | 41.085335 | 22 |
| GCCGATG | 230 | 0.0 | 41.085335 | 16 |
| CGTCATA | 230 | 0.0 | 41.085335 | 24 |
| AATTCGG | 270 | 0.0 | 40.831722 | 20 |
| AAGCCGA | 245 | 0.0 | 40.406567 | 14 |
| GATGACG | 235 | 0.0 | 40.211178 | 19 |
| CGGTATT | 275 | 0.0 | 40.089325 | 24 |
| GAATTCG | 275 | 0.0 | 40.089325 | 19 |
| ATTCGGT | 280 | 0.0 | 39.373444 | 21 |
| TTCGGTA | 280 | 0.0 | 39.373444 | 22 |
| TATGCCG | 75 | 0.0 | 39.00161 | 43 |
| TGACGTC | 245 | 0.0 | 38.569904 | 21 |
| ATGACGT | 245 | 0.0 | 38.569904 | 20 |