Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391287.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 794260 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4308 | 0.54239166016166 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3241 | 0.4080527786870798 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACGTATCTCGTATGCCGTC | 1864 | 0.23468385667161887 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACGTATCTCGTATGCC | 1658 | 0.20874776521542066 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGATGAC | 450 | 0.0 | 43.494095 | 18 |
| TAAGCCG | 450 | 0.0 | 43.494095 | 13 |
| CCGATGA | 455 | 0.0 | 43.01614 | 17 |
| GCCGATG | 455 | 0.0 | 43.01614 | 16 |
| AGCCGAT | 450 | 0.0 | 42.994164 | 15 |
| GACGTCA | 455 | 0.0 | 42.52438 | 22 |
| ACGTCAT | 455 | 0.0 | 42.52438 | 23 |
| CGTCATA | 455 | 0.0 | 42.52438 | 24 |
| TGACGTC | 460 | 0.0 | 42.06216 | 21 |
| AGGCGGT | 300 | 0.0 | 40.497055 | 34 |
| GGCGGTC | 300 | 0.0 | 40.497055 | 35 |
| GATGACG | 485 | 0.0 | 40.35535 | 19 |
| ATGACGT | 480 | 0.0 | 40.30703 | 20 |
| CGGTATT | 310 | 0.0 | 39.91645 | 24 |
| GCGGTCT | 305 | 0.0 | 39.833168 | 36 |
| TTCGGTA | 305 | 0.0 | 39.833168 | 22 |
| TCGGTAT | 305 | 0.0 | 39.833168 | 23 |
| AAGCCGA | 490 | 0.0 | 39.484436 | 14 |
| TGCCGTC | 225 | 0.0 | 38.00202 | 45 |
| TCGGGGA | 320 | 0.0 | 37.963596 | 14 |