Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378342.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1006781 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5323 | 0.5287147850426259 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGATTATCTCGTATGCC | 4793 | 0.4760717574129826 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGATTATCTCGTATGCCGTC | 4231 | 0.4202502828321154 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 465 | 0.0 | 39.6733 | 43 |
| TGCCGTC | 475 | 0.0 | 39.311707 | 45 |
| ATGCCGT | 505 | 0.0 | 36.530865 | 44 |
| GATCGGA | 835 | 0.0 | 36.37347 | 26 |
| ATCGGAA | 845 | 0.0 | 36.20926 | 27 |
| AGATCGG | 850 | 0.0 | 35.731586 | 25 |
| TCGGAAG | 870 | 0.0 | 35.68595 | 28 |
| CCGAGAT | 950 | 0.0 | 32.680817 | 22 |
| CGAGATC | 970 | 0.0 | 32.00699 | 23 |
| GAGATCG | 995 | 0.0 | 31.202791 | 24 |
| ATGCCGA | 1910 | 0.0 | 26.149122 | 19 |
| AATGCCG | 1945 | 0.0 | 25.678568 | 18 |
| TGCCGAG | 1980 | 0.0 | 25.33828 | 20 |
| CGCTGAT | 1035 | 0.0 | 24.127932 | 32 |
| GCCGAGA | 2075 | 0.0 | 23.96137 | 21 |
| ACCGCTG | 1030 | 0.0 | 23.808208 | 30 |
| GACCGCT | 1035 | 0.0 | 23.693193 | 29 |
| CCGCTGA | 1040 | 0.0 | 23.579285 | 31 |
| AGACCGC | 1050 | 0.0 | 23.568983 | 28 |
| GAATGCC | 2130 | 0.0 | 23.448273 | 17 |