Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378367.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 954559 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTCAAGATCTCGTATGCC | 3547 | 0.3715852032194972 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3454 | 0.36184248433046046 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTCAAGATCTCGTATGCCGTC | 2739 | 0.2869387853448556 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 350 | 0.0 | 36.639618 | 45 |
| TATGCCG | 355 | 0.0 | 36.123566 | 43 |
| AGATCGG | 470 | 0.0 | 33.02899 | 25 |
| ATGCCGT | 400 | 0.0 | 32.059666 | 44 |
| GATCGGA | 485 | 0.0 | 32.007477 | 26 |
| ATCGGAA | 495 | 0.0 | 31.815367 | 27 |
| TCGGAAG | 520 | 0.0 | 30.718437 | 28 |
| CCGAGAT | 625 | 0.0 | 24.837801 | 22 |
| GAGATCG | 625 | 0.0 | 24.837801 | 24 |
| CGAGATC | 640 | 0.0 | 24.255665 | 23 |
| AATGCCG | 1220 | 0.0 | 23.60447 | 18 |
| ATGCCGA | 1225 | 0.0 | 23.508123 | 19 |
| TGCCGAG | 1235 | 0.0 | 23.499947 | 20 |
| GAATGCC | 1360 | 0.0 | 21.174597 | 17 |
| ACCGGTC | 665 | 0.0 | 20.975586 | 30 |
| GACCGGT | 680 | 0.0 | 20.51289 | 29 |
| AGACCGG | 680 | 0.0 | 20.51289 | 28 |
| CCGGTCA | 670 | 0.0 | 20.483263 | 31 |
| CGGTCAA | 675 | 0.0 | 20.331535 | 32 |
| GCCGAGA | 1385 | 0.0 | 20.305063 | 21 |