Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378575.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 300048 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGATGATCTCGTATGCC | 1863 | 0.6209006558950567 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGTATG | 195 | 0.0 | 42.6912 | 43 |
| CGTATGC | 205 | 0.0 | 40.608704 | 44 |
| AGACCGG | 205 | 0.0 | 40.608704 | 28 |
| ATCTCGT | 210 | 0.0 | 39.641827 | 40 |
| ACCGGTG | 210 | 0.0 | 39.641827 | 30 |
| CTCGTAT | 210 | 0.0 | 39.641827 | 42 |
| GACCGGT | 210 | 0.0 | 39.641827 | 29 |
| GAGACCG | 210 | 0.0 | 39.641827 | 27 |
| TCTCGTA | 210 | 0.0 | 39.641827 | 41 |
| CCGGTGA | 210 | 0.0 | 39.641827 | 31 |
| GCGGTTC | 215 | 0.0 | 38.719925 | 8 |
| GAGCGGT | 215 | 0.0 | 38.719925 | 6 |
| CGGTGAT | 215 | 0.0 | 38.719925 | 32 |
| AGCGGTT | 220 | 0.0 | 37.839928 | 7 |
| CCGAGAC | 225 | 0.0 | 36.999043 | 25 |
| AAGAGCG | 230 | 0.0 | 36.20075 | 4 |
| AGAGCGG | 230 | 0.0 | 36.20075 | 5 |
| CGGTTCA | 230 | 0.0 | 36.194714 | 9 |
| TTCGTAG | 25 | 0.0021049003 | 35.99907 | 14 |
| TCGTAGA | 25 | 0.0021049003 | 35.99907 | 15 |