Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391261.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 589619 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4107 | 0.6965515019020757 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2895 | 0.49099503238532 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGCATATCTCGTATGCCGTC | 1397 | 0.2369326632961285 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGCATATCTCGTATGCC | 1304 | 0.22115976588271408 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 730 | 0.12380876464293043 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 602 | 0.10209983056855358 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 340 | 0.0 | 42.348152 | 13 |
| CGTCATA | 340 | 0.0 | 42.348152 | 24 |
| GGCGGTC | 465 | 0.0 | 41.608196 | 35 |
| TTCGGTA | 470 | 0.0 | 41.16556 | 22 |
| TTCCTCG | 430 | 0.0 | 40.83358 | 10 |
| TCGGGGA | 475 | 0.0 | 40.732235 | 14 |
| CGGTATT | 475 | 0.0 | 40.732235 | 24 |
| TGCCGTC | 155 | 0.0 | 40.654354 | 45 |
| GACGTCA | 355 | 0.0 | 40.558796 | 22 |
| ACGTCAT | 355 | 0.0 | 40.558796 | 23 |
| TCGGTAT | 480 | 0.0 | 40.307938 | 23 |
| AGCCGAT | 360 | 0.0 | 39.99548 | 15 |
| GCCGATG | 360 | 0.0 | 39.99548 | 16 |
| AAGCCGA | 360 | 0.0 | 39.99548 | 14 |
| TCCTCGG | 440 | 0.0 | 39.90554 | 11 |
| ATTCGGT | 485 | 0.0 | 39.8924 | 21 |
| AATTCGG | 485 | 0.0 | 39.8924 | 20 |
| GAATTCG | 485 | 0.0 | 39.8924 | 19 |
| CAGGCGG | 480 | 0.0 | 39.83924 | 33 |
| TGACGTC | 365 | 0.0 | 39.44759 | 21 |