Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378584.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 301361 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAAGATATCTCGTATGCC | 1745 | 0.5790397563055605 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 195 | 0.0 | 41.53846 | 44 |
| TATCTCG | 195 | 0.0 | 41.53846 | 39 |
| ATCTCGT | 200 | 0.0 | 40.500004 | 40 |
| CCGTAAG | 200 | 0.0 | 40.500004 | 31 |
| TCGTATG | 200 | 0.0 | 40.500004 | 43 |
| CGTAAGA | 200 | 0.0 | 40.500004 | 32 |
| CTCGTAT | 205 | 0.0 | 39.512196 | 42 |
| TCTCGTA | 205 | 0.0 | 39.512196 | 41 |
| ACCGTAA | 205 | 0.0 | 39.512196 | 30 |
| GACCGTA | 205 | 0.0 | 38.414635 | 29 |
| GAGACCG | 205 | 0.0 | 38.414635 | 27 |
| AGACCGT | 205 | 0.0 | 38.414635 | 28 |
| GCGGTTC | 215 | 0.0 | 37.67442 | 8 |
| AGAGCGG | 220 | 0.0 | 36.81818 | 5 |
| CGGTTCA | 225 | 0.0 | 36.000004 | 9 |
| GAGCGGT | 225 | 0.0 | 36.000004 | 6 |
| CCGAGAC | 220 | 0.0 | 35.795456 | 25 |
| AAGAGCG | 230 | 0.0 | 35.21739 | 4 |
| AGCGGTT | 230 | 0.0 | 35.21739 | 7 |
| CGGAAGA | 220 | 0.0 | 33.75 | 1 |