Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378319.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 930770 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCCTAAATCTCGTATGCC | 4824 | 0.518280563404493 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4814 | 0.5172061841271206 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCCTAAATCTCGTATGCCGTC | 3841 | 0.41266908043877654 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 420 | 0.0 | 41.782173 | 44 |
| TGCCGTC | 440 | 0.0 | 39.88298 | 45 |
| TATGCCG | 470 | 0.0 | 37.81594 | 43 |
| AGATCGG | 625 | 0.0 | 33.47716 | 25 |
| GATCGGA | 650 | 0.0 | 32.18958 | 26 |
| ATCGGAA | 660 | 0.0 | 31.36098 | 27 |
| TCGGAAG | 715 | 0.0 | 30.207232 | 28 |
| CGAGATC | 730 | 0.0 | 28.661953 | 23 |
| CCGAGAT | 735 | 0.0 | 28.466976 | 22 |
| GAGATCG | 735 | 0.0 | 28.466976 | 24 |
| CGACGAC | 40 | 6.168314E-4 | 28.122616 | 43 |
| TGCCGAG | 1675 | 0.0 | 23.50547 | 20 |
| AATGCCG | 1680 | 0.0 | 23.435514 | 18 |
| ATGCCGA | 1695 | 0.0 | 23.360851 | 19 |
| GACCGTC | 945 | 0.0 | 22.379055 | 29 |
| ACCGTCC | 945 | 0.0 | 22.379055 | 30 |
| CGTCCTA | 950 | 0.0 | 22.261269 | 32 |
| CGTATGC | 965 | 0.0 | 22.148382 | 44 |
| TCGTATG | 965 | 0.0 | 22.148382 | 43 |
| TCTCGTA | 955 | 0.0 | 22.144722 | 41 |