Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378218.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 809039 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4589 | 0.5672161663405596 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGTACATCTCGTATGCCGTC | 2667 | 0.3296503629614889 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGTACATCTCGTATGCC | 2268 | 0.2803325921247307 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATCGGAA | 620 | 0.0 | 38.828884 | 27 |
| GATCGGA | 635 | 0.0 | 37.91167 | 26 |
| TATGCCG | 335 | 0.0 | 37.61256 | 43 |
| TCGGAAG | 655 | 0.0 | 37.44105 | 28 |
| AGATCGG | 655 | 0.0 | 37.097557 | 25 |
| ATGCCGT | 350 | 0.0 | 36.00059 | 44 |
| TGCCGTC | 350 | 0.0 | 36.00059 | 45 |
| AACGGGT | 25 | 0.0021072093 | 35.998367 | 12 |
| CCGAGAT | 710 | 0.0 | 34.2238 | 22 |
| CGAGATC | 740 | 0.0 | 32.83635 | 23 |
| GAGATCG | 770 | 0.0 | 31.849205 | 24 |
| TGCCGAG | 1250 | 0.0 | 29.698652 | 20 |
| AATGCCG | 1270 | 0.0 | 29.408117 | 18 |
| ATGCCGA | 1270 | 0.0 | 29.408117 | 19 |
| GCCGAGA | 1310 | 0.0 | 27.994915 | 21 |
| CGGAAGA | 910 | 0.0 | 26.94933 | 29 |
| GAATGCC | 1420 | 0.0 | 26.301624 | 17 |
| GGAATGC | 1475 | 0.0 | 25.168352 | 16 |
| GACCGGA | 570 | 0.0 | 22.104261 | 26 |
| CTCGTAT | 575 | 0.0 | 21.913404 | 39 |