Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378158.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1149415 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTGAGATCTCGTATGCC | 1587 | 0.13807023572860977 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GAGACCG | 200 | 0.0 | 34.87358 | 27 |
| TCTCGTA | 195 | 0.0 | 34.613976 | 41 |
| ATCTCGT | 205 | 0.0 | 34.023006 | 40 |
| AGACCGT | 200 | 0.0 | 33.748627 | 28 |
| CGTGTGA | 215 | 0.0 | 32.440544 | 32 |
| CGTATGC | 210 | 0.0 | 32.141552 | 44 |
| CTCGTAT | 220 | 0.0 | 30.680573 | 42 |
| GATCGGA | 170 | 0.0 | 30.437294 | 18 |
| GACCGTG | 235 | 0.0 | 29.679646 | 29 |
| AGATCGG | 170 | 0.0 | 29.113934 | 17 |
| TCGTATG | 240 | 0.0 | 29.06132 | 43 |
| AATCCGT | 40 | 6.167608E-4 | 28.123857 | 36 |
| ATCGGAA | 180 | 0.0 | 27.496492 | 19 |
| CCGTGTG | 250 | 0.0 | 26.998903 | 31 |
| CGAGACC | 270 | 0.0 | 24.998983 | 26 |
| GTATGCC | 275 | 0.0 | 24.544456 | 45 |
| ACCGTGT | 300 | 0.0 | 22.499086 | 30 |
| GATCTCG | 330 | 0.0 | 22.499086 | 39 |
| CGAGATC | 245 | 0.0 | 22.038004 | 15 |
| GAGCGGT | 315 | 0.0 | 21.437029 | 6 |