Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391293.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 522003 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3720 | 0.7126395825311349 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2509 | 0.48064857864801547 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTGAATCTCGTATGCC | 1453 | 0.2783508907036933 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTGAATCTCGTATGCCGTC | 1436 | 0.27509420443943805 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 681 | 0.13045902035045776 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACGTCAT | 415 | 0.0 | 43.907997 | 23 |
| TAAGCCG | 420 | 0.0 | 43.385284 | 13 |
| CGTCATA | 420 | 0.0 | 43.385284 | 24 |
| ATGCCGT | 195 | 0.0 | 42.684853 | 44 |
| GACGTCA | 430 | 0.0 | 42.376324 | 22 |
| TGACGTC | 430 | 0.0 | 42.376324 | 21 |
| GCCGATG | 430 | 0.0 | 42.376324 | 16 |
| AAGCCGA | 430 | 0.0 | 42.376324 | 14 |
| AATTCGG | 315 | 0.0 | 42.1355 | 20 |
| GCGGTCT | 305 | 0.0 | 42.041843 | 36 |
| AGGCGGT | 305 | 0.0 | 42.041843 | 34 |
| CCTCGGG | 265 | 0.0 | 41.59651 | 12 |
| CTCGGGG | 260 | 0.0 | 41.53121 | 13 |
| TTCGGTA | 320 | 0.0 | 41.47713 | 22 |
| AGCCGAT | 440 | 0.0 | 41.413223 | 15 |
| CCGATGA | 440 | 0.0 | 41.413223 | 17 |
| GGCGGTC | 310 | 0.0 | 41.363743 | 35 |
| CGATGAC | 445 | 0.0 | 40.94791 | 18 |
| ATTCGGT | 330 | 0.0 | 40.90195 | 21 |
| CGGGGAA | 330 | 0.0 | 40.90195 | 15 |