Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378325.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1094825 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTACCATCTCGTATGCC | 5657 | 0.5167035827643688 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4767 | 0.4354120521544539 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATTACCATCTCGTATGCCGTC | 4080 | 0.3726622976274747 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 525 | 0.0 | 38.138443 | 43 |
| ATGCCGT | 540 | 0.0 | 36.662422 | 44 |
| TGCCGTC | 550 | 0.0 | 36.40488 | 45 |
| GATCGGA | 680 | 0.0 | 31.430187 | 26 |
| AGATCGG | 690 | 0.0 | 31.300728 | 25 |
| ATCGGAA | 705 | 0.0 | 30.315641 | 27 |
| ACGGGGC | 30 | 0.0051500667 | 29.996529 | 35 |
| TCGGAAG | 775 | 0.0 | 29.028898 | 28 |
| CGAGATC | 765 | 0.0 | 28.52611 | 23 |
| CCGAGAT | 770 | 0.0 | 28.048702 | 22 |
| CCGCTCT | 65 | 4.8779657E-7 | 27.689104 | 14 |
| GAGATCG | 780 | 0.0 | 27.689104 | 24 |
| CCGATTA | 1220 | 0.0 | 24.52585 | 31 |
| GACCGAT | 1220 | 0.0 | 24.52585 | 29 |
| CGTATGC | 1225 | 0.0 | 24.242092 | 44 |
| GAACCGC | 65 | 1.5250313E-5 | 24.227966 | 11 |
| ACCGATT | 1240 | 0.0 | 24.130272 | 30 |
| TCGTATG | 1235 | 0.0 | 24.045801 | 43 |
| ATCTCGT | 1245 | 0.0 | 23.852661 | 40 |
| CGATTAC | 1255 | 0.0 | 23.841864 | 32 |