FastQCFastQC Report
Mon 6 Jun 2016
ERR1391243.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391243.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences753957
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA43430.5760275453374663No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA28390.37654667308613093No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATGAC4150.043.37074718
TGACGTC4350.041.3766921
GATGACG4400.040.90649819
CGTCATA4400.040.90649824
CCGATGA4400.040.90378617
AGCCGAT4350.040.85677315
AAGCCGA4350.040.85677314
GCCGATG4350.040.339616
TAAGCCG4350.040.339613
ATGACGT4550.039.55793420
AATTCGG4500.039.49749420
TCCTCGG3950.039.31434211
TTCCTCG4000.038.82291410
GACGTCA4650.038.70722222
TTCGGTA4600.038.63885522
TCGGTAT4600.038.63885523
ACGTCAT4700.038.2954523
GCGGTCT4600.038.1472336
CGGTATT4700.037.81675324
GGCGGTC4700.037.33558735