Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378470.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 959732 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGAGACATCTCGTATGCCGTC | 5205 | 0.5423389029437384 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGAGACATCTCGTATGCC | 3556 | 0.3705201035289018 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2493 | 0.25976001633789436 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1155 | 0.12034609661863936 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 740 | 0.0 | 39.53811 | 43 |
| ATGCCGT | 750 | 0.0 | 39.01093 | 44 |
| TGCCGTC | 770 | 0.0 | 37.99766 | 45 |
| GTATGCC | 1130 | 0.0 | 25.889511 | 42 |
| CGTATGC | 1155 | 0.0 | 25.327814 | 41 |
| CTCGTAT | 1165 | 0.0 | 25.105173 | 39 |
| TCTCGTA | 1165 | 0.0 | 25.105173 | 38 |
| ATCTCGT | 1175 | 0.0 | 24.891514 | 37 |
| TCGTATG | 1185 | 0.0 | 24.681456 | 40 |
| ACCGTGA | 1180 | 0.0 | 24.594099 | 27 |
| GAGACCG | 1210 | 0.0 | 24.542103 | 24 |
| GACCGTG | 1185 | 0.0 | 24.490324 | 26 |
| CGTGAGA | 1200 | 0.0 | 24.37167 | 29 |
| AGACCGT | 1200 | 0.0 | 24.184195 | 25 |
| CCGTGAG | 1205 | 0.0 | 24.083845 | 28 |
| CATCTCG | 1215 | 0.0 | 24.072039 | 36 |
| AATGCCG | 1725 | 0.0 | 22.953386 | 18 |
| CCGAGAC | 1305 | 0.0 | 22.41073 | 22 |
| ATGCCGA | 1780 | 0.0 | 22.244152 | 19 |
| TGCCGAG | 1785 | 0.0 | 22.181843 | 20 |