Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378545.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 276946 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGAGATCTCGTATGCC | 1414 | 0.5105688473565244 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGATCG | 110 | 0.0 | 42.9542 | 31 |
| CGATCGA | 110 | 0.0 | 42.9542 | 32 |
| ATCTCGT | 115 | 0.0 | 41.086628 | 40 |
| CTCGTAT | 115 | 0.0 | 41.086628 | 42 |
| GACCGAT | 115 | 0.0 | 41.086628 | 29 |
| TCTCGTA | 115 | 0.0 | 41.086628 | 41 |
| CGTATGC | 120 | 0.0 | 39.374687 | 44 |
| ACCGATC | 120 | 0.0 | 39.374687 | 30 |
| TCGTATG | 120 | 0.0 | 39.374687 | 43 |
| GAGACCG | 125 | 0.0 | 37.799698 | 27 |
| AGACCGA | 125 | 0.0 | 37.799698 | 28 |
| TCGAGAT | 125 | 0.0 | 37.799698 | 35 |
| GCGGTTC | 130 | 0.0 | 36.345863 | 8 |
| GTATGCC | 130 | 0.0 | 36.345863 | 45 |
| GAGCGGT | 130 | 0.0 | 36.345863 | 6 |
| TCACGAG | 25 | 0.0021044367 | 35.99971 | 15 |
| CGGAAGA | 130 | 0.0 | 34.621357 | 1 |
| CCGAGAC | 130 | 0.0 | 34.61511 | 25 |
| AGAGCGG | 140 | 0.0 | 33.74973 | 5 |
| ATGCCGA | 135 | 0.0 | 33.33307 | 22 |