Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391282.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 681930 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3937 | 0.5773319842212543 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2893 | 0.4242370917836142 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACGAGTATCTCGTATGCCGTC | 1867 | 0.2737817664569677 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACGAGTATCTCGTATGCC | 1787 | 0.2620503570747731 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1149 | 0.16849236725177072 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 165 | 0.0 | 43.628616 | 43 |
| AGCCGAT | 420 | 0.0 | 42.84953 | 15 |
| CGTCATA | 415 | 0.0 | 42.82372 | 24 |
| TGACGTC | 420 | 0.0 | 42.31391 | 21 |
| AAGCCGA | 430 | 0.0 | 41.85303 | 14 |
| GCCGATG | 425 | 0.0 | 41.816097 | 16 |
| CGATGAC | 425 | 0.0 | 41.816097 | 18 |
| TAAGCCG | 425 | 0.0 | 41.816097 | 13 |
| ATGCCGT | 175 | 0.0 | 41.135548 | 44 |
| GCGGTCT | 450 | 0.0 | 40.992718 | 36 |
| GACGTCA | 435 | 0.0 | 40.854813 | 22 |
| GATGACG | 435 | 0.0 | 40.854813 | 19 |
| CTCGGGG | 375 | 0.0 | 40.792755 | 13 |
| CGGTATT | 455 | 0.0 | 40.54225 | 24 |
| ATTCGGT | 460 | 0.0 | 40.10157 | 21 |
| GGCGGTC | 460 | 0.0 | 40.10157 | 35 |
| AATTCGG | 460 | 0.0 | 40.10157 | 20 |
| TTCGGTA | 460 | 0.0 | 40.10157 | 22 |
| TCGGTAT | 460 | 0.0 | 40.10157 | 23 |
| CCGATGA | 445 | 0.0 | 39.936726 | 17 |