Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378153.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 937173 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGCAGATCTCGTATGCC | 968 | 0.10328936066233237 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 120 | 0.0 | 37.500893 | 41 |
| GACCGTA | 115 | 0.0 | 35.21447 | 29 |
| AGACCGT | 115 | 0.0 | 35.21447 | 28 |
| AGATCGG | 40 | 1.5611471E-5 | 33.7472 | 17 |
| GATCGGA | 40 | 1.5611471E-5 | 33.7472 | 18 |
| CGTAGCA | 145 | 0.0 | 32.585243 | 32 |
| CTCGTAT | 140 | 0.0 | 32.14362 | 42 |
| CCGTAGC | 140 | 0.0 | 32.141903 | 31 |
| GCGATTA | 30 | 0.005146182 | 30.000713 | 35 |
| CGTATGC | 145 | 0.0 | 29.483458 | 44 |
| TCGTATG | 145 | 0.0 | 29.480312 | 43 |
| GAGACCG | 140 | 0.0 | 28.92617 | 27 |
| ACCGTAG | 150 | 0.0 | 28.497635 | 30 |
| ATCTCGT | 155 | 0.0 | 27.582771 | 40 |
| GAGCGGT | 165 | 0.0 | 27.276285 | 6 |
| GTATGCC | 175 | 0.0 | 24.429152 | 45 |
| AGAGCGG | 185 | 0.0 | 24.327497 | 5 |
| CCGAGAC | 170 | 0.0 | 23.821552 | 25 |
| CGGTTCA | 180 | 0.0 | 23.748028 | 9 |
| AGCGGTT | 180 | 0.0 | 23.748028 | 7 |