FastQCFastQC Report
Mon 6 Jun 2016
ERR1378522.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378522.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences349715
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATCATATCTCGTATGCC17080.4883976952661453Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG207.027318E-444.99917
ACCGCAT2600.041.53753730
CGTATGC2550.041.46966644
CGCATCA2550.041.46966632
TATCTCG2550.041.46966639
CTCGTAT2600.040.67217342
TCTCGTA2600.040.67217341
TCGTATG2600.040.67217343
CCGCATC2600.040.67217331
ATCTCGT2700.039.9991140
AGACCGC2700.039.165828
GACCGCA2650.039.05573329
AGCGGTT2750.038.459197
AGAGCGG2750.038.459195
GCGGTTC2800.037.772428
GAGCGGT2800.037.772426
CGGTTCA2800.037.7670179
GAGACCG2700.037.4991727
CCGAGAC2650.037.3576625
CGAGACC2650.037.3576626