Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378165.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 965970 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGCGATCTCGTATGCC | 1258 | 0.1302317877366792 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GATAGCG | 180 | 0.0 | 36.24725 | 33 |
| CGATAGC | 185 | 0.0 | 35.267593 | 32 |
| TAGCGAT | 200 | 0.0 | 34.872353 | 35 |
| ATAGCGA | 195 | 0.0 | 34.61276 | 34 |
| CCGATAG | 185 | 0.0 | 34.051468 | 31 |
| ACCGATA | 185 | 0.0 | 34.051468 | 30 |
| GACCGAT | 180 | 0.0 | 33.74744 | 29 |
| AGATCGG | 135 | 0.0 | 33.330803 | 17 |
| TCGGAAG | 140 | 0.0 | 32.14042 | 20 |
| ATCGGAA | 140 | 0.0 | 32.14042 | 19 |
| CGTATGC | 210 | 0.0 | 32.140415 | 44 |
| GATCGGA | 145 | 0.0 | 31.032127 | 18 |
| TCTCGTA | 220 | 0.0 | 30.679487 | 41 |
| CTCGTAT | 225 | 0.0 | 29.997723 | 42 |
| AGACCGA | 210 | 0.0 | 28.926374 | 28 |
| ATCTCGT | 245 | 0.0 | 28.467224 | 40 |
| TCGTATG | 245 | 0.0 | 27.548927 | 43 |
| GAGACCG | 240 | 0.0 | 27.185436 | 27 |
| AGCGATC | 260 | 0.0 | 26.824884 | 36 |
| CGCGATC | 60 | 8.194609E-6 | 26.248007 | 15 |