Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378135.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1292414 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACTACATCTCGTATGCC | 1328 | 0.10275345206721684 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 150 | 0.0 | 37.49884 | 44 |
| GACCGTA | 150 | 0.0 | 37.49884 | 29 |
| TCTCGTA | 165 | 0.0 | 34.08985 | 41 |
| CGTACTA | 165 | 0.0 | 34.08985 | 32 |
| CTCGTAT | 170 | 0.0 | 33.08721 | 42 |
| CCGTACT | 170 | 0.0 | 33.08721 | 31 |
| ACCGTAC | 170 | 0.0 | 33.08721 | 30 |
| ATCTCGT | 175 | 0.0 | 32.14186 | 40 |
| CATCTCG | 175 | 0.0 | 32.14186 | 39 |
| AGACCGT | 175 | 0.0 | 32.14186 | 28 |
| CCGAGAC | 175 | 0.0 | 32.14186 | 25 |
| TCGTATG | 175 | 0.0 | 32.14186 | 43 |
| GAGCGGT | 205 | 0.0 | 29.642403 | 6 |
| CGGTTCA | 205 | 0.0 | 29.632082 | 9 |
| GCGGTTC | 210 | 0.0 | 28.926556 | 8 |
| GAGACCG | 200 | 0.0 | 28.12413 | 27 |
| AAGAGCG | 230 | 0.0 | 26.420403 | 4 |
| AGAGCGG | 230 | 0.0 | 26.420403 | 5 |
| ATGCCGA | 230 | 0.0 | 26.411203 | 22 |
| CGGAAGA | 240 | 0.0 | 25.322495 | 1 |