Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378320.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1025539 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTAAATCTCGTATGCC | 4095 | 0.39930222058839304 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4062 | 0.3960844004957393 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTAAATCTCGTATGCCGTC | 3432 | 0.33465328963598656 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 440 | 0.0 | 36.812397 | 44 |
| TGCCGTC | 440 | 0.0 | 36.812397 | 45 |
| TATGCCG | 450 | 0.0 | 36.494267 | 43 |
| ATCGGAA | 605 | 0.0 | 34.953186 | 27 |
| TCGGAAG | 625 | 0.0 | 33.834682 | 28 |
| GATCGGA | 630 | 0.0 | 33.566154 | 26 |
| AGATCGG | 650 | 0.0 | 32.879448 | 25 |
| CGAGATC | 770 | 0.0 | 28.04754 | 23 |
| GAGATCG | 770 | 0.0 | 27.755379 | 24 |
| CCGAGAT | 785 | 0.0 | 27.5116 | 22 |
| ATGCCGA | 1530 | 0.0 | 24.407928 | 19 |
| AATGCCG | 1535 | 0.0 | 24.328423 | 18 |
| TGCCGAG | 1565 | 0.0 | 23.862064 | 20 |
| CGCTCTA | 870 | 0.0 | 21.979305 | 32 |
| GCCGAGA | 1715 | 0.0 | 21.90618 | 21 |
| TCTCGTA | 900 | 0.0 | 21.496622 | 41 |
| CGTATGC | 890 | 0.0 | 21.485388 | 44 |
| ACCGCTC | 895 | 0.0 | 21.365358 | 30 |
| GAATGCC | 1750 | 0.0 | 21.339504 | 17 |
| GACCGCT | 910 | 0.0 | 21.260395 | 29 |