Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378346.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 737956 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2668 | 0.36153917035704025 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACTTATCTCGTATGCC | 2390 | 0.32386754765866804 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACTTATCTCGTATGCCGTC | 2171 | 0.2941909815761373 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 300 | 0.0 | 35.24692 | 44 |
| GATCGGA | 355 | 0.0 | 34.85611 | 26 |
| TATGCCG | 315 | 0.0 | 33.568497 | 43 |
| AGATCGG | 370 | 0.0 | 33.443024 | 25 |
| ATCGGAA | 380 | 0.0 | 32.562946 | 27 |
| TGCCGTC | 325 | 0.0 | 32.53562 | 45 |
| TCGGAAG | 405 | 0.0 | 31.6639 | 28 |
| CGAGATC | 410 | 0.0 | 30.729023 | 23 |
| GAGATCG | 415 | 0.0 | 29.816673 | 24 |
| CCGAGAT | 425 | 0.0 | 29.64447 | 22 |
| CGTGACT | 615 | 0.0 | 23.41259 | 32 |
| CGTATGC | 620 | 0.0 | 23.223778 | 44 |
| TATCTCG | 620 | 0.0 | 23.223778 | 39 |
| GTATGCC | 630 | 0.0 | 23.212257 | 45 |
| CCGTGAC | 625 | 0.0 | 23.037989 | 31 |
| TGCCGAG | 1035 | 0.0 | 22.824095 | 20 |
| AATGCCG | 1045 | 0.0 | 22.820974 | 18 |
| TCTCGTA | 635 | 0.0 | 22.675184 | 41 |
| ACCGTGA | 635 | 0.0 | 22.675184 | 30 |
| AGACCGT | 640 | 0.0 | 22.498035 | 28 |