Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378557.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 323461 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCC | 1582 | 0.48908523747839766 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGTAGA | 205 | 0.0 | 40.60976 | 31 |
| CGTAGAC | 205 | 0.0 | 40.60976 | 32 |
| GACGATC | 195 | 0.0 | 40.384617 | 36 |
| GACCGTA | 205 | 0.0 | 39.512196 | 29 |
| AGACGAT | 200 | 0.0 | 39.375 | 35 |
| TAGACGA | 210 | 0.0 | 38.571426 | 34 |
| GTAGACG | 220 | 0.0 | 37.840908 | 33 |
| ACCGTAG | 220 | 0.0 | 37.840908 | 30 |
| AGACCGT | 215 | 0.0 | 37.67442 | 28 |
| CGTATGC | 205 | 0.0 | 37.317074 | 44 |
| GAGACCG | 220 | 0.0 | 36.81818 | 27 |
| ATCTCGT | 210 | 0.0 | 36.42857 | 40 |
| TCGTATG | 210 | 0.0 | 36.42857 | 43 |
| TAAGACC | 25 | 0.0021048754 | 36.0 | 12 |
| GTATGCC | 215 | 0.0 | 35.581394 | 45 |
| TCTCGTA | 215 | 0.0 | 35.581394 | 41 |
| ACGATCT | 230 | 0.0 | 35.217392 | 37 |
| CTCGTAT | 220 | 0.0 | 34.772728 | 42 |
| GATCTCG | 225 | 0.0 | 34.0 | 39 |
| AAGAGCG | 235 | 0.0 | 33.51064 | 4 |