FastQCFastQC Report
Mon 6 Jun 2016
ERR1391354.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391354.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences787021
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT708.1672624E-1032.13073742
CGTATGC751.708031E-929.9886944
TCTCGTA856.501068E-926.4606141
TCGTATG856.501068E-926.4606143
GATCGGA1252.910383E-1123.39117818
TCGGAAG1252.910383E-1123.39117820
ATCGGAA1252.910383E-1123.39117819
ATCTCGT1003.6552592E-822.49151640
ACCGTTC903.2961725E-722.49151630
AGATCGG1305.0931703E-1122.4872317
GCGCTCC500.002271460822.487238
GACCGTT855.045329E-621.16848829
GTATGCC1151.6000922E-719.5578445
CCGTTCT1051.4496109E-619.27844231
AGACCGT951.3192526E-518.94022428
AATCTCG1253.8445978E-717.99321439
GAGACCG1002.0541924E-517.99092727
CCGAGAC1651.2332748E-917.72058945
CGTTCTG1153.4582827E-617.60205732
TCGTTGG1358.3205305E-716.7145524