Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378563.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 319998 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCAGTATCTCGTATGCC | 2557 | 0.7990674941718385 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 280 | 0.0 | 42.588547 | 42 |
| CGAGCAG | 290 | 0.0 | 41.895824 | 32 |
| ATCTCGT | 280 | 0.0 | 41.78499 | 40 |
| ACCGAGC | 295 | 0.0 | 41.185726 | 30 |
| GACCGAG | 290 | 0.0 | 41.119976 | 29 |
| TCGTATG | 290 | 0.0 | 41.119976 | 43 |
| TCTCGTA | 300 | 0.0 | 40.4993 | 41 |
| CCGAGCA | 300 | 0.0 | 40.4993 | 31 |
| CGTATGC | 295 | 0.0 | 40.423027 | 44 |
| AGACCGA | 300 | 0.0 | 39.74931 | 28 |
| TATCTCG | 295 | 0.0 | 39.660328 | 39 |
| GAGACCG | 305 | 0.0 | 39.097683 | 27 |
| GTATGCC | 310 | 0.0 | 38.467075 | 45 |
| CGAGACC | 325 | 0.0 | 38.076263 | 26 |
| CAGTATC | 330 | 0.0 | 35.45393 | 36 |
| CCGAGAC | 345 | 0.0 | 35.216778 | 25 |
| GCGGTTC | 365 | 0.0 | 35.136375 | 8 |
| AGCGGTT | 365 | 0.0 | 35.136375 | 7 |
| CGGTTCA | 365 | 0.0 | 34.519947 | 9 |
| AGAGCGG | 380 | 0.0 | 33.75469 | 5 |