FastQCFastQC Report
Mon 6 Jun 2016
ERR1391334.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391334.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences587034
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT352.8290914E-432.12271542
CCTGCGA300.005163172729.9786534
CGTATGC406.18515E-428.10737644
TCGTATG406.18515E-428.10737643
TCGTATA507.187279E-526.9807829
GATCGGA450.001230326824.98433518
TCTCGTA450.001230326824.98433541
ATCTTCG807.312595E-519.7711665
CGTATAA707.011409E-419.27198810
CTTCGTA600.00652716318.7398477
AGCGCTC800.00171570416.8658647
CGTGAGC850.00249163515.9498471
GGAAACG1150.00120702113.68590459
ACTAGAC2154.0898158E-813.59612719
TATCTTC4600.012.7714364
TCTTCGT1250.002178715312.6535466
ACCACGC1651.0481663E-412.2639939
GCCAAAC1450.006849671210.85526438
GTAGTCC1450.006849671210.85526422
GCACTCC2201.3163062E-410.21999416