FastQCFastQC Report
Mon 6 Jun 2016
ERR1378536.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378536.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421382
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTATGATCTCGTATGCC15330.3638029151696086Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGGTT2150.042.9067547
AGAGCGG2150.042.9067545
CGGTTCA2100.042.856929
AGACCGT2050.042.8046528
GCGGTTC2150.041.8602458
AATGCCG2150.041.86024521
AAGAGCG2300.041.086744
GAGCGGT2250.040.9997866
ATGCCGA2200.040.90887522
GACCGTC2150.040.8137429
GAGACCG2150.040.8137427
TGCCGAG2150.040.8137423
CGGAAGA2250.040.004541
CTCGTAT2200.039.88615442
CGTATGC2150.039.76723544
CCGAGAC2150.039.76723525
TCGTATG2150.039.76723543
CCGTCTA2250.038.99979431
ACCGTCT2350.037.34022530
TCTCGTA2300.037.17371741