Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378352.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1233392 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5174 | 0.4194935592252909 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATTCTGATCTCGTATGCCGTC | 3721 | 0.3016883521216288 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTCTGATCTCGTATGCC | 1923 | 0.155911502587985 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 545 | 0.0 | 36.32635 | 43 |
| ATGCCGT | 550 | 0.0 | 35.996105 | 44 |
| ATCGGAA | 715 | 0.0 | 34.61164 | 27 |
| TCGGAAG | 755 | 0.0 | 34.26782 | 28 |
| TGCCGTC | 585 | 0.0 | 34.22707 | 45 |
| AGATCGG | 755 | 0.0 | 33.373875 | 25 |
| GATCGGA | 755 | 0.0 | 33.075893 | 26 |
| ATGCCGA | 1605 | 0.0 | 28.875381 | 19 |
| AATGCCG | 1615 | 0.0 | 28.557285 | 18 |
| TGCCGAG | 1630 | 0.0 | 28.432508 | 20 |
| GAGATCG | 915 | 0.0 | 27.783882 | 24 |
| CTCGTAT | 715 | 0.0 | 27.689314 | 39 |
| CGAGATC | 925 | 0.0 | 27.483515 | 23 |
| GACCGAT | 735 | 0.0 | 27.241953 | 26 |
| AGACCGA | 745 | 0.0 | 27.17827 | 25 |
| CGTATGC | 735 | 0.0 | 26.935863 | 41 |
| TCGTATG | 735 | 0.0 | 26.935863 | 40 |
| ACCGATT | 745 | 0.0 | 26.87629 | 27 |
| GAATGCC | 1740 | 0.0 | 26.635054 | 17 |
| TCTCGTA | 745 | 0.0 | 26.574308 | 38 |