Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378478.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1059087 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGACAATCTCGTATGCCGTC | 3409 | 0.3218810163848673 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGACAATCTCGTATGCC | 2052 | 0.1937517880967286 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1902 | 0.17958864569199698 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 455 | 0.0 | 37.090714 | 43 |
| TGCCGTC | 475 | 0.0 | 36.47816 | 45 |
| ATGCCGT | 470 | 0.0 | 36.387447 | 44 |
| AGACCGC | 675 | 0.0 | 25.329268 | 25 |
| CGCAGAC | 690 | 0.0 | 24.782139 | 29 |
| TCTCGTA | 690 | 0.0 | 24.456059 | 38 |
| TCGTATG | 695 | 0.0 | 24.280117 | 40 |
| ACCGCAG | 695 | 0.0 | 24.277822 | 27 |
| CGTATGC | 700 | 0.0 | 24.107826 | 41 |
| CTCGTAT | 700 | 0.0 | 24.106688 | 39 |
| GACCGCA | 710 | 0.0 | 23.76379 | 26 |
| CCGCAGA | 720 | 0.0 | 23.435951 | 28 |
| ATCGGAA | 250 | 0.0 | 23.397348 | 27 |
| ATCTCGT | 735 | 0.0 | 23.264866 | 37 |
| GAGACCG | 730 | 0.0 | 22.804558 | 24 |
| AATGCCG | 1010 | 0.0 | 22.273653 | 18 |
| AGCGGTT | 1025 | 0.0 | 22.179739 | 4 |
| GCGGTTC | 1045 | 0.0 | 21.755245 | 5 |
| CGGTTCA | 1040 | 0.0 | 21.643404 | 6 |
| GTATGCC | 780 | 0.0 | 21.633186 | 42 |