Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378211.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 671248 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5059 | 0.7536707744380616 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTCTAATCTCGTATGCCGTC | 2916 | 0.43441470216671035 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTCTAATCTCGTATGCC | 2589 | 0.38569947322003195 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 765 | 0.11396682001287153 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 380 | 0.0 | 37.893738 | 44 |
| TATGCCG | 410 | 0.0 | 35.669785 | 43 |
| TGCCGTC | 405 | 0.0 | 35.554615 | 45 |
| GATCGGA | 680 | 0.0 | 33.749107 | 26 |
| GGTCGGA | 40 | 1.5598862E-5 | 33.749104 | 26 |
| TCGGAAG | 730 | 0.0 | 33.286793 | 28 |
| AGATCGG | 690 | 0.0 | 33.259987 | 25 |
| ATCGGAA | 690 | 0.0 | 33.259987 | 27 |
| CCGAGAT | 795 | 0.0 | 30.282219 | 22 |
| CGAGATC | 825 | 0.0 | 28.908325 | 23 |
| GAGATCG | 805 | 0.0 | 28.788057 | 24 |
| TGCCGAG | 1460 | 0.0 | 27.276676 | 20 |
| AATGCCG | 1470 | 0.0 | 27.244177 | 18 |
| ATGCCGA | 1510 | 0.0 | 26.522478 | 19 |
| GCCGAGA | 1505 | 0.0 | 25.564108 | 21 |
| GAATGCC | 1585 | 0.0 | 25.267467 | 17 |
| GGAATGC | 1595 | 0.0 | 25.250114 | 16 |
| CGGAAGA | 1005 | 0.0 | 24.402338 | 29 |
| AGGAATG | 1750 | 0.0 | 23.142244 | 15 |
| GTCGGAA | 60 | 2.466468E-4 | 22.499403 | 27 |