FastQCFastQC Report
Mon 6 Jun 2016
ERR1391235.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391235.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1006474
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA51870.515363536464926No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA38630.3838151805213051No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCATA5250.042.85018524
GCCGATG5400.042.07650816
GACGTCA5300.042.02148422
CCTCGGG5100.041.90496412
TTCGGTA5650.041.80737322
TGACGTC5400.041.6599121
CGATGAC5400.041.6599118
TTCCTCG5100.041.4968410
GGCGGTC5700.041.4406435
TCGGTAT5700.041.4406423
GCGGTCT5750.041.08028836
AGCCGAT5550.040.939315
TAAGCCG5600.040.57377213
ATGACGT5500.040.49342720
ACGTCAT5500.040.49342723
AGGCGGT5850.040.3780634
CCGATGA5600.040.1720517
CGGTCTC5900.040.03587337
CGGTATT5950.039.69943624
TCCTCGG5400.039.6083911