Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378125.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 630221 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1573 | 0.24959498334711158 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1117 | 0.17723941284089234 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATTTTATCTCGTATGCCGTC | 1062 | 0.16851231552106324 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATTTTATCTCGTATGCC | 949 | 0.1505820973912326 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TTCGGTA | 170 | 0.0 | 43.67108 | 22 |
| TCGGTAT | 170 | 0.0 | 43.67108 | 23 |
| TGCCGTC | 110 | 0.0 | 42.96288 | 45 |
| CGGTATT | 175 | 0.0 | 42.423336 | 24 |
| AGGCGGT | 185 | 0.0 | 41.346245 | 34 |
| GCGGTCT | 195 | 0.0 | 39.22593 | 36 |
| CGGTCTC | 195 | 0.0 | 39.22593 | 37 |
| GACGTCA | 140 | 0.0 | 38.56667 | 22 |
| CTCGGGG | 170 | 0.0 | 38.377617 | 13 |
| GGCGGTC | 200 | 0.0 | 38.245277 | 35 |
| AATTCGG | 200 | 0.0 | 38.245277 | 20 |
| AAGCCGA | 145 | 0.0 | 37.236782 | 14 |
| TAAGCCG | 145 | 0.0 | 37.236782 | 13 |
| TCGGGGA | 200 | 0.0 | 37.12042 | 14 |
| ATTCGGT | 200 | 0.0 | 37.12042 | 21 |
| AGCCGAT | 150 | 0.0 | 35.995556 | 15 |
| CCGATGA | 150 | 0.0 | 35.995556 | 17 |
| GCCGATG | 150 | 0.0 | 35.995556 | 16 |
| CGATGAC | 150 | 0.0 | 35.995556 | 18 |
| GAATTCG | 215 | 0.0 | 35.577007 | 19 |