FastQCFastQC Report
Mon 6 Jun 2016
ERR1391288.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391288.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences343895
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA45491.3227874787362421No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA32110.9337152328472353No Hit
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTACGAATCTCGTATGCC19790.5754663487401678Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTACGAATCTCGTATGCCGTC19190.5580191628258626Illumina Paired End PCR Primer 2 (96% over 32bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT10380.3018363163174806Illumina Paired End PCR Primer 2 (96% over 30bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA5960.17330871341543203No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATGAC5500.044.17125318
TAAGCCG5500.044.17125313
CCGATGA5600.043.38248417
GCCGATG5600.043.38248416
GATGACG5600.043.38248419
ACGTCAT5550.043.36800823
CGTCATA5550.043.36800824
AGCCGAT5650.042.99856615
AAGCCGA5650.042.99856614
GACGTCA5600.042.98079322
ATGCCGT2100.042.84689744
TGACGTC5650.042.60043321
GCGGTCT4650.042.0867136
TGCCGTC2150.041.8626345
ATGACGT5750.041.85955420
TATGCCG2150.041.85045643
ATTCGGT4700.041.6389821
CGGTATT4700.041.6389824
TCGGTAT4700.041.6389823
TCGGGGA4550.041.5285314