Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378227.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 905039 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5908 | 0.6527895482957088 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACGTATCTCGTATGCCGTC | 3722 | 0.41125299572725593 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACGTATCTCGTATGCC | 2923 | 0.3229695073913942 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 500 | 0.0 | 40.051228 | 43 |
| TGCCGTC | 520 | 0.0 | 38.5108 | 45 |
| ATGCCGT | 540 | 0.0 | 37.08447 | 44 |
| GATCGGA | 775 | 0.0 | 33.38628 | 26 |
| ATCGGAA | 810 | 0.0 | 32.22143 | 27 |
| AGATCGG | 805 | 0.0 | 32.142067 | 25 |
| TCGGAAG | 840 | 0.0 | 31.606367 | 28 |
| CGGCGGA | 30 | 0.005147305 | 29.999264 | 38 |
| CGAGATC | 885 | 0.0 | 29.745031 | 23 |
| GAGATCG | 880 | 0.0 | 29.658361 | 24 |
| CCGAGAT | 930 | 0.0 | 28.305758 | 22 |
| ATGCCGA | 1745 | 0.0 | 26.947763 | 19 |
| AATGCCG | 1770 | 0.0 | 26.69426 | 18 |
| TGCCGAG | 1765 | 0.0 | 26.51493 | 20 |
| GAATGCC | 1890 | 0.0 | 24.880342 | 17 |
| GCCGAGA | 1880 | 0.0 | 24.65365 | 21 |
| CGTATCT | 795 | 0.0 | 24.339025 | 34 |
| ACGTATC | 805 | 0.0 | 24.316172 | 33 |
| CGTATGC | 825 | 0.0 | 24.273474 | 41 |
| CGAGACG | 845 | 0.0 | 24.230175 | 29 |