Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391165.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1482903 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2562 | 0.17276922361071492 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1832 | 0.12354145888166658 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1532 | 0.10331087063685217 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 355 | 0.0 | 40.562225 | 15 |
| GACGTCA | 355 | 0.0 | 39.92844 | 22 |
| GATGACG | 360 | 0.0 | 39.37388 | 19 |
| GCCGATG | 365 | 0.0 | 38.834515 | 16 |
| TGACGTC | 370 | 0.0 | 38.309723 | 21 |
| CGATGAC | 370 | 0.0 | 38.309723 | 18 |
| ATGACGT | 380 | 0.0 | 37.893658 | 20 |
| TAAGCCG | 380 | 0.0 | 37.893658 | 13 |
| CGTCATA | 380 | 0.0 | 37.893658 | 24 |
| CCGATGA | 375 | 0.0 | 37.798923 | 17 |
| GCGGTCT | 275 | 0.0 | 37.63656 | 36 |
| ACGTCAT | 395 | 0.0 | 37.02426 | 23 |
| GGCGGTC | 280 | 0.0 | 36.159683 | 35 |
| AGATCGG | 225 | 0.0 | 34.999004 | 25 |
| CGGTATT | 305 | 0.0 | 33.93346 | 24 |
| AAGCCGA | 425 | 0.0 | 33.88139 | 14 |
| CGGTCTC | 300 | 0.0 | 33.750175 | 37 |
| ATTCGGT | 300 | 0.0 | 33.74904 | 21 |
| TCGGTAT | 300 | 0.0 | 33.74904 | 23 |
| GATCGGA | 235 | 0.0 | 33.509686 | 26 |