Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378184.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 830925 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGAGTCATCTCGTATGCC | 1230 | 0.14802780034299123 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCGGTAG | 20 | 7.035169E-4 | 44.996086 | 7 |
| TCTCGTA | 90 | 0.0 | 37.498997 | 41 |
| CGATCGT | 25 | 0.0021076722 | 35.996872 | 30 |
| CGTATGC | 100 | 0.0 | 33.749096 | 44 |
| TCGTATG | 100 | 0.0 | 33.749096 | 43 |
| CTCGTAT | 110 | 0.0 | 30.680998 | 42 |
| CGAGAGT | 110 | 0.0 | 30.680998 | 32 |
| TGCGGGC | 30 | 0.005148636 | 29.99739 | 28 |
| ACGATCG | 30 | 0.005148636 | 29.99739 | 29 |
| CCGAGAG | 125 | 0.0 | 28.799229 | 31 |
| GAGACCG | 120 | 0.0 | 28.122553 | 27 |
| CGGTTCA | 140 | 0.0 | 27.319054 | 9 |
| ACCGAGA | 125 | 0.0 | 26.997652 | 30 |
| AGACCGA | 125 | 0.0 | 26.997652 | 28 |
| AGAGCGG | 135 | 0.0 | 26.675585 | 5 |
| GACCGAG | 130 | 0.0 | 25.959282 | 29 |
| ATCTCGT | 135 | 0.0 | 24.99933 | 40 |
| CCGAGAC | 135 | 0.0 | 24.99783 | 25 |
| GCGGTTC | 140 | 0.0 | 24.105047 | 8 |
| GAGCGGT | 160 | 0.0 | 22.507524 | 6 |