Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378339.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 633795 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2298 | 0.3625778051262632 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCATTATCTCGTATGCC | 2190 | 0.3455375949636712 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCATTATCTCGTATGCCGTC | 2001 | 0.3157172271791352 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 215 | 0.0 | 39.76298 | 43 |
| TGCCGTC | 230 | 0.0 | 38.147892 | 45 |
| ATGCCGT | 230 | 0.0 | 37.169743 | 44 |
| ATCGGAA | 325 | 0.0 | 30.45812 | 27 |
| GATCGGA | 330 | 0.0 | 29.996635 | 26 |
| AGATCGG | 370 | 0.0 | 26.753754 | 25 |
| TCGGAAG | 370 | 0.0 | 26.753754 | 28 |
| CCGTGCA | 535 | 0.0 | 24.8103 | 31 |
| GAGACCG | 535 | 0.0 | 24.8103 | 27 |
| AGACCGT | 535 | 0.0 | 24.8103 | 28 |
| CTCGTAT | 530 | 0.0 | 24.619879 | 42 |
| TATCTCG | 530 | 0.0 | 24.619879 | 39 |
| GACCGTG | 540 | 0.0 | 24.580576 | 29 |
| TCTCGTA | 535 | 0.0 | 24.389786 | 41 |
| CGTATGC | 540 | 0.0 | 24.163956 | 44 |
| CGTGCAT | 560 | 0.0 | 24.104439 | 32 |
| ATCTCGT | 545 | 0.0 | 23.942266 | 40 |
| GTATGCC | 545 | 0.0 | 23.942266 | 45 |
| ACCGTGC | 555 | 0.0 | 23.916235 | 30 |
| TCGTATG | 560 | 0.0 | 23.702698 | 43 |