Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378146.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 855791 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTATGATCTCGTATGCC | 1083 | 0.12654958979470454 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCCGCCG | 25 | 0.0021036544 | 36.01099 | 5 |
| ATCGGAA | 25 | 0.0021078826 | 35.99626 | 19 |
| CGTATGC | 100 | 0.0 | 33.748466 | 44 |
| GCGGTTC | 100 | 0.0 | 33.746494 | 8 |
| GACCGTC | 105 | 0.0 | 32.141396 | 29 |
| AGACCGT | 105 | 0.0 | 32.141396 | 28 |
| CCGTCTA | 100 | 0.0 | 31.49857 | 31 |
| CGTCTAT | 105 | 0.0 | 29.998636 | 32 |
| AGATCGG | 30 | 0.0051491465 | 29.996883 | 17 |
| GATCGGA | 30 | 0.0051491465 | 29.996883 | 18 |
| TCGGAAG | 30 | 0.0051491465 | 29.996883 | 20 |
| ACCGTCT | 110 | 0.0 | 28.635063 | 30 |
| GAGACCG | 120 | 0.0 | 28.123722 | 27 |
| CGTTATG | 40 | 6.1685924E-4 | 28.122078 | 11 |
| CGCCTGG | 65 | 4.8753645E-7 | 27.68943 | 13 |
| TCTCGTA | 115 | 0.0 | 27.39006 | 41 |
| AGCGGTT | 125 | 0.0 | 26.997198 | 7 |
| GAGCGGT | 130 | 0.0 | 25.969461 | 6 |
| ATCTCGT | 130 | 0.0 | 25.96036 | 40 |
| GCCCGAG | 45 | 0.0012199526 | 25.022257 | 1 |