Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378195.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 522127 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCC | 1253 | 0.23997992825500308 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 170 | 0.0 | 41.025745 | 41 |
| CGTATGC | 165 | 0.0 | 40.905434 | 44 |
| CTCGTAT | 170 | 0.0 | 39.70233 | 42 |
| ATCTCGT | 175 | 0.0 | 38.567978 | 40 |
| CGAATAC | 175 | 0.0 | 38.567978 | 32 |
| TCGTATG | 175 | 0.0 | 38.567978 | 43 |
| GACCGAA | 185 | 0.0 | 36.483223 | 29 |
| ACCGAAT | 195 | 0.0 | 34.612293 | 30 |
| GCGGTTC | 215 | 0.0 | 33.48538 | 8 |
| GAGCGGT | 205 | 0.0 | 32.942814 | 6 |
| AGAGCGG | 205 | 0.0 | 32.942814 | 5 |
| CGGTTCA | 205 | 0.0 | 32.923885 | 9 |
| AATCTCG | 205 | 0.0 | 32.923885 | 39 |
| CGGAAGA | 200 | 0.0 | 32.65962 | 1 |
| AGACCGA | 210 | 0.0 | 32.139984 | 28 |
| CCGAGAC | 210 | 0.0 | 32.139984 | 25 |
| CCGAATA | 210 | 0.0 | 32.139984 | 31 |
| GAGACCG | 215 | 0.0 | 31.392542 | 27 |
| AGCGGTT | 240 | 0.0 | 30.934732 | 7 |
| AAGAGCG | 220 | 0.0 | 30.696712 | 4 |