Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378365.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1040442 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACAACATCTCGTATGCC | 3845 | 0.36955447780846984 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3387 | 0.32553472466509425 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGACAACATCTCGTATGCCGTC | 2573 | 0.24729874418756645 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 415 | 0.0 | 38.488716 | 43 |
| ATGCCGT | 450 | 0.0 | 35.495148 | 44 |
| TGCCGTC | 460 | 0.0 | 34.723515 | 45 |
| GATCGGA | 525 | 0.0 | 32.566975 | 26 |
| ATCGGAA | 525 | 0.0 | 32.138462 | 27 |
| AGATCGG | 550 | 0.0 | 30.677624 | 25 |
| TCGGAAG | 565 | 0.0 | 30.261347 | 28 |
| CGATCCC | 30 | 0.005150479 | 29.9959 | 24 |
| CCGAGAT | 640 | 0.0 | 26.715097 | 22 |
| CGAGATC | 640 | 0.0 | 26.715097 | 23 |
| GAGATCG | 645 | 0.0 | 26.508003 | 24 |
| ATGCCGA | 1375 | 0.0 | 24.21487 | 19 |
| AATGCCG | 1395 | 0.0 | 23.867704 | 18 |
| TGCCGAG | 1400 | 0.0 | 23.782463 | 20 |
| GCCGAGA | 1515 | 0.0 | 21.8287 | 21 |
| GAATGCC | 1540 | 0.0 | 21.62042 | 17 |
| CGGACAA | 770 | 0.0 | 21.328253 | 32 |
| ACCGGAC | 785 | 0.0 | 20.920708 | 30 |
| GGAATGC | 1655 | 0.0 | 20.525896 | 16 |
| CCGGACA | 805 | 0.0 | 20.400938 | 31 |