FastQCFastQC Report
Mon 6 Jun 2016
ERR1391368.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391368.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences988813
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC501.9884556E-631.48534644
CTCGTAT501.9892414E-631.48375342
CGACAAC300.005159914529.9845289
TATCTCG651.5295707E-524.21827139
TCTCGTA651.5295707E-524.21827141
TCGTATG651.5295707E-524.21827143
ATCGGAA654.2509835E-420.75956719
AGATCGG654.253886E-420.75746717
GAGACCG908.2898205E-619.98867227
GCGGTTC807.591675E-519.6773458
GATCGGA707.004427E-419.27674118
GAGCGGT901.8176656E-417.5593456
CGTATAA952.8299683E-416.57039610
CCGTGAC952.8299683E-416.57039631
AGCGGTT952.8299683E-416.5703967
AGACCGT952.8299683E-416.57039628
ACCGTGA1104.656989E-516.35519630
ATCTCGT1004.1826893E-415.74187740
CGGTTCA1004.1826893E-415.7418779
AAAGCGC1301.0711416E-515.6297475