Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378145.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1068282 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTAGTATCTCGTATGCC | 1566 | 0.14659050700096043 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 270 | 0.0 | 35.831432 | 42 |
| ATCTCGT | 275 | 0.0 | 35.17995 | 40 |
| CGTCTAG | 275 | 0.0 | 35.17995 | 32 |
| GACCGTC | 275 | 0.0 | 35.178307 | 29 |
| GATCGGA | 65 | 3.6743586E-10 | 34.61193 | 18 |
| CCGTCTA | 280 | 0.0 | 34.55174 | 31 |
| TCTCGTA | 280 | 0.0 | 34.55174 | 41 |
| TCGTATG | 300 | 0.0 | 33.74821 | 43 |
| GAGACCG | 290 | 0.0 | 33.358738 | 27 |
| ACCGTCT | 290 | 0.0 | 33.358738 | 30 |
| AGACCGT | 300 | 0.0 | 32.996708 | 28 |
| GCGGTTC | 300 | 0.0 | 32.24678 | 8 |
| AGCGGTT | 310 | 0.0 | 31.932295 | 7 |
| AGAGCGG | 305 | 0.0 | 31.73597 | 5 |
| GAGCGGT | 310 | 0.0 | 31.224098 | 6 |
| CGGTTCA | 310 | 0.0 | 31.20656 | 9 |
| TATCTCG | 320 | 0.0 | 30.23277 | 39 |
| CGTATGC | 325 | 0.0 | 29.767649 | 44 |
| CGGAAGA | 325 | 0.0 | 29.099897 | 1 |
| AGATCGG | 80 | 3.3978722E-9 | 28.122192 | 17 |