Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378577.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 306240 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCAGTAATCTCGTATGCC | 1789 | 0.5841823406478579 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGCAGT | 210 | 0.0 | 42.855278 | 32 |
| CCGGCAG | 215 | 0.0 | 41.858643 | 31 |
| GACCGGC | 215 | 0.0 | 41.858643 | 29 |
| ACCGGCA | 220 | 0.0 | 40.90731 | 30 |
| CGTATGC | 215 | 0.0 | 40.812176 | 44 |
| CTCGTAT | 215 | 0.0 | 40.812176 | 42 |
| TCTCGTA | 215 | 0.0 | 40.812176 | 41 |
| GAGACCG | 230 | 0.0 | 40.10695 | 27 |
| AGACCGG | 225 | 0.0 | 39.99826 | 28 |
| GTATGCC | 220 | 0.0 | 39.88463 | 45 |
| GCGGTTC | 245 | 0.0 | 39.494526 | 8 |
| CCGAGAC | 225 | 0.0 | 38.998302 | 25 |
| CGGTTCA | 250 | 0.0 | 38.69831 | 9 |
| AAGAGCG | 245 | 0.0 | 38.582348 | 4 |
| AATGCCG | 235 | 0.0 | 38.296204 | 21 |
| ATGCCGA | 235 | 0.0 | 38.296204 | 22 |
| TGCCGAG | 235 | 0.0 | 38.296204 | 23 |
| ATCTCGT | 230 | 0.0 | 38.150513 | 40 |
| GAGCGGT | 255 | 0.0 | 37.94572 | 6 |
| AGAGCGG | 260 | 0.0 | 37.222073 | 5 |