Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378329.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1040499 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAATCTATCTCGTATGCC | 2512 | 0.24142262510583865 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2114 | 0.2031717474019677 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAATCTATCTCGTATGCCGTC | 1701 | 0.16347925370423227 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 270 | 0.0 | 36.662205 | 43 |
| TGCCGTC | 270 | 0.0 | 36.662205 | 45 |
| ATGCCGT | 275 | 0.0 | 35.995617 | 44 |
| GATCGGA | 320 | 0.0 | 32.33981 | 26 |
| TCGGAAG | 360 | 0.0 | 29.996347 | 28 |
| ATCGGAA | 340 | 0.0 | 29.775787 | 27 |
| AGATCGG | 350 | 0.0 | 29.567827 | 25 |
| AATGCCG | 835 | 0.0 | 25.05683 | 18 |
| TGCCGAG | 855 | 0.0 | 24.73383 | 20 |
| CCGAGAT | 420 | 0.0 | 24.639856 | 22 |
| GAGATCG | 420 | 0.0 | 24.639856 | 24 |
| CGAGATC | 425 | 0.0 | 24.349977 | 23 |
| ATGCCGA | 860 | 0.0 | 24.328434 | 19 |
| GCCGAGA | 935 | 0.0 | 21.655117 | 21 |
| GACCGCA | 500 | 0.0 | 21.147427 | 29 |
| CTCGTAT | 490 | 0.0 | 21.119879 | 42 |
| CGCAATC | 535 | 0.0 | 20.604969 | 32 |
| ACCGCAA | 530 | 0.0 | 20.374878 | 30 |
| GAATGCC | 1035 | 0.0 | 20.21493 | 17 |
| CCGCAAT | 535 | 0.0 | 20.184458 | 31 |