Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378486.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 893229 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACGAGTATCTCGTATGCC | 3367 | 0.376947009109646 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACGAGTATCTCGTATGCCGTC | 2905 | 0.32522455047921645 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1253 | 0.14027757719464998 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 345 | 0.0 | 39.150017 | 43 |
| ATGCCGT | 385 | 0.0 | 35.080517 | 44 |
| TGCCGTC | 415 | 0.0 | 33.086987 | 45 |
| AGATCGG | 280 | 0.0 | 25.711311 | 25 |
| CGGAAGA | 795 | 0.0 | 25.4973 | 1 |
| GATCGGA | 285 | 0.0 | 25.260237 | 26 |
| ATCGGAA | 285 | 0.0 | 25.260237 | 27 |
| CGAGTAT | 825 | 0.0 | 24.8167 | 35 |
| ACGAGTA | 840 | 0.0 | 24.372179 | 34 |
| CTCGTAT | 825 | 0.0 | 24.278074 | 42 |
| GACGAGT | 845 | 0.0 | 24.227966 | 33 |
| TCGTATG | 830 | 0.0 | 24.138578 | 43 |
| ACCGACG | 850 | 0.0 | 24.085447 | 30 |
| TATCTCG | 835 | 0.0 | 23.980604 | 39 |
| CGACGAG | 855 | 0.0 | 23.9446 | 32 |
| ATCTCGT | 840 | 0.0 | 23.837862 | 40 |
| CGTATGC | 850 | 0.0 | 23.834116 | 44 |
| TCTCGTA | 845 | 0.0 | 23.703445 | 41 |
| GACCGAC | 865 | 0.0 | 23.667782 | 29 |
| GTATGCC | 880 | 0.0 | 23.53318 | 45 |