Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378199.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 716354 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 8448 | 1.1793052038517269 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACATATCTCGTATGCCGTC | 4266 | 0.5955156249563763 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACATATCTCGTATGCC | 4181 | 0.5836499831089099 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1143 | 0.1595579839018139 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 475 | 0.0 | 41.207844 | 44 |
| TATGCCG | 505 | 0.0 | 38.759853 | 43 |
| TGCCGTC | 510 | 0.0 | 38.379856 | 45 |
| AGCACGT | 25 | 0.002107253 | 35.997658 | 30 |
| GATCGGA | 1125 | 0.0 | 33.7978 | 26 |
| AGATCGG | 1140 | 0.0 | 33.35309 | 25 |
| ATCGGAA | 1120 | 0.0 | 33.346043 | 27 |
| TCGGAAG | 1175 | 0.0 | 32.934025 | 28 |
| CCGAGAT | 1175 | 0.0 | 32.934025 | 22 |
| CGAGATC | 1185 | 0.0 | 32.46624 | 23 |
| GAGATCG | 1185 | 0.0 | 32.46624 | 24 |
| GGTCGGA | 50 | 1.981247E-6 | 31.49795 | 26 |
| GTCGGAA | 50 | 1.981247E-6 | 31.49795 | 27 |
| ATGCCGA | 2240 | 0.0 | 26.917889 | 19 |
| AATGCCG | 2265 | 0.0 | 26.62078 | 18 |
| TGCCGAG | 2280 | 0.0 | 26.346966 | 20 |
| GCCGAGA | 2255 | 0.0 | 25.840889 | 21 |
| GAATGCC | 2395 | 0.0 | 25.175814 | 17 |
| AACGGGT | 45 | 0.0012265694 | 24.998371 | 12 |
| GGAATGC | 2450 | 0.0 | 24.794302 | 16 |