Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378115.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 568688 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCGAGAAATCTCGTATGCCGTC | 2519 | 0.442949385251667 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2024 | 0.3559069296345272 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1540 | 0.2707987508088794 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGAGAAATCTCGTATGCC | 1490 | 0.26200658357482487 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGGTAT | 230 | 0.0 | 44.015804 | 23 |
| ATGACGT | 215 | 0.0 | 42.90119 | 20 |
| TTCGGTA | 240 | 0.0 | 42.181812 | 22 |
| CGGTATT | 240 | 0.0 | 42.181812 | 24 |
| AGCCGAT | 220 | 0.0 | 41.926167 | 15 |
| GCCGATG | 220 | 0.0 | 41.926167 | 16 |
| ATGCCGT | 285 | 0.0 | 41.836464 | 44 |
| GCGGTCT | 245 | 0.0 | 41.32096 | 36 |
| GAATTCG | 245 | 0.0 | 41.32096 | 19 |
| TGACGTC | 225 | 0.0 | 40.994473 | 21 |
| ACGTCAT | 225 | 0.0 | 40.994473 | 23 |
| GGCGGTC | 250 | 0.0 | 40.49454 | 35 |
| CGGTCTC | 250 | 0.0 | 40.49454 | 37 |
| TATGCCG | 300 | 0.0 | 40.494537 | 43 |
| CCGATGA | 230 | 0.0 | 40.103287 | 17 |
| GACGTCA | 230 | 0.0 | 40.103287 | 22 |
| TAAGCCG | 230 | 0.0 | 40.103287 | 13 |
| GATGACG | 235 | 0.0 | 39.250023 | 19 |
| CGTCATA | 235 | 0.0 | 39.250023 | 24 |
| TCCTCGG | 230 | 0.0 | 39.152702 | 11 |