Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378159.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1110023 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATAGATCTCGTATGCC | 1303 | 0.11738495508651624 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GATCGGA | 105 | 0.0 | 40.71127 | 18 |
| AGATCGG | 110 | 0.0 | 38.860756 | 17 |
| CGGCATA | 170 | 0.0 | 35.734257 | 32 |
| AGACCGG | 160 | 0.0 | 35.15365 | 28 |
| CCGGCAT | 170 | 0.0 | 34.410767 | 31 |
| ACCGGCA | 170 | 0.0 | 34.409214 | 30 |
| TCGGAAG | 135 | 0.0 | 33.330864 | 20 |
| TCTCGTA | 170 | 0.0 | 33.087273 | 41 |
| GACCGGC | 175 | 0.0 | 32.140476 | 29 |
| CGTATGC | 190 | 0.0 | 30.78858 | 44 |
| ATCTCGT | 190 | 0.0 | 29.604404 | 40 |
| TCGTATG | 200 | 0.0 | 29.249151 | 43 |
| ATCGGAA | 155 | 0.0 | 29.030107 | 19 |
| CTCGTAT | 195 | 0.0 | 28.845316 | 42 |
| ACGCCCG | 40 | 6.1686814E-4 | 28.122917 | 12 |
| GAGACCG | 195 | 0.0 | 27.690256 | 27 |
| CGAGACC | 240 | 0.0 | 24.373196 | 26 |
| GTATGCC | 245 | 0.0 | 23.876858 | 45 |
| GATCTCG | 245 | 0.0 | 23.876858 | 39 |
| GCGGTTC | 240 | 0.0 | 23.435764 | 8 |