Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391249.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 692749 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4283 | 0.618261448230167 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3200 | 0.4619277689321818 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTAGTATCTCGTATGCCGTC | 1169 | 0.16874798808803768 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTAGTATCTCGTATGCC | 1050 | 0.15157004918087214 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGACGT | 570 | 0.0 | 43.021484 | 20 |
| CGTCATA | 570 | 0.0 | 42.626793 | 24 |
| TTCGGTA | 370 | 0.0 | 42.562786 | 22 |
| TAAGCCG | 580 | 0.0 | 42.279736 | 13 |
| TGACGTC | 575 | 0.0 | 42.256123 | 21 |
| ACGTCAT | 575 | 0.0 | 42.256123 | 23 |
| TCGGTAT | 375 | 0.0 | 41.995285 | 23 |
| GATGACG | 590 | 0.0 | 41.944443 | 19 |
| AGCCGAT | 585 | 0.0 | 41.91837 | 15 |
| GACGTCA | 580 | 0.0 | 41.891846 | 22 |
| GCCGATG | 590 | 0.0 | 41.56313 | 16 |
| CGATGAC | 590 | 0.0 | 41.56313 | 18 |
| GGCGGTC | 390 | 0.0 | 41.5338 | 35 |
| CGGTCTC | 390 | 0.0 | 41.5338 | 37 |
| CGGTATT | 380 | 0.0 | 41.442715 | 24 |
| CCGATGA | 595 | 0.0 | 41.213856 | 17 |
| TCGGGGA | 390 | 0.0 | 40.95694 | 14 |
| GAATTCG | 395 | 0.0 | 40.438496 | 19 |
| AATTCGG | 400 | 0.0 | 39.933014 | 20 |
| AAGCCGA | 615 | 0.0 | 39.873573 | 14 |