Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378474.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 869641 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCC | 5473 | 0.6293401530056655 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCCGTC | 4921 | 0.5658656848055692 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2504 | 0.2879349064729009 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1051 | 0.12085446753315449 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 565 | 0.0 | 37.43497 | 44 |
| TGCCGTC | 580 | 0.0 | 36.46682 | 45 |
| TATGCCG | 585 | 0.0 | 36.15514 | 43 |
| ATCGGAA | 450 | 0.0 | 28.497742 | 27 |
| GATCGGA | 445 | 0.0 | 28.312363 | 26 |
| AGATCGG | 460 | 0.0 | 27.389133 | 25 |
| CGTATAA | 80 | 1.053977E-7 | 25.310495 | 10 |
| TCGGAAG | 525 | 0.0 | 25.28371 | 28 |
| CGGAAGA | 1155 | 0.0 | 24.174782 | 1 |
| GTATGCC | 1235 | 0.0 | 22.5919 | 45 |
| CGTATGC | 1250 | 0.0 | 22.320797 | 44 |
| GACCGAG | 1245 | 0.0 | 22.227156 | 29 |
| CCGAGAT | 590 | 0.0 | 22.116894 | 22 |
| AGACCGA | 1255 | 0.0 | 22.050045 | 28 |
| CTCGTAT | 1260 | 0.0 | 21.962545 | 42 |
| GAGACCG | 1265 | 0.0 | 21.875736 | 27 |
| CGAGTGA | 1270 | 0.0 | 21.789614 | 32 |
| ACCGAGT | 1270 | 0.0 | 21.789614 | 30 |
| TCTCGTA | 1270 | 0.0 | 21.789614 | 41 |
| CATCTCG | 1300 | 0.0 | 21.632902 | 39 |