Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378104.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 810488 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTCCGCATCTCGTATGCCGTC | 2711 | 0.33448983822092365 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTCCGCATCTCGTATGCC | 1794 | 0.22134812606725823 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1563 | 0.1928467787308387 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1152 | 0.14213658931409226 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCATA | 180 | 0.0 | 42.493244 | 24 |
| TTCGGTA | 165 | 0.0 | 40.902584 | 22 |
| TGCCGTC | 305 | 0.0 | 40.56982 | 45 |
| GATGACG | 195 | 0.0 | 40.378193 | 19 |
| ATTCGGT | 170 | 0.0 | 39.69957 | 21 |
| TCGGTAT | 170 | 0.0 | 39.69957 | 23 |
| AGCCGAT | 200 | 0.0 | 39.368736 | 15 |
| GCCGATG | 200 | 0.0 | 39.368736 | 16 |
| TAAGCCG | 210 | 0.0 | 38.565292 | 13 |
| ATGCCGT | 325 | 0.0 | 38.070866 | 44 |
| AAGCCGA | 215 | 0.0 | 37.668427 | 14 |
| GGCGGTC | 180 | 0.0 | 37.494038 | 35 |
| CGATGAC | 210 | 0.0 | 37.494034 | 18 |
| TGACGTC | 205 | 0.0 | 37.31114 | 21 |
| TATGCCG | 335 | 0.0 | 36.93442 | 43 |
| TTCCTCG | 165 | 0.0 | 36.84415 | 10 |
| GACGTCA | 210 | 0.0 | 36.422775 | 22 |
| ACGTCAT | 215 | 0.0 | 35.575737 | 23 |
| GCGGTCT | 190 | 0.0 | 35.520668 | 36 |
| AATTCGG | 190 | 0.0 | 35.520668 | 20 |