Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378493.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 786024 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCCGTC | 2535 | 0.32250923635919515 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCC | 2447 | 0.31131364945599627 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1515 | 0.19274220634484443 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 340 | 0.0 | 37.72395 | 43 |
| ATGCCGT | 385 | 0.0 | 33.899124 | 44 |
| TGCCGTC | 385 | 0.0 | 33.314655 | 45 |
| GATCGGA | 280 | 0.0 | 26.516846 | 26 |
| ATCGGAA | 295 | 0.0 | 25.17013 | 27 |
| AGATCGG | 295 | 0.0 | 25.16693 | 25 |
| TCTCGTA | 555 | 0.0 | 23.108698 | 38 |
| CGTATGC | 560 | 0.0 | 22.90674 | 41 |
| TCGTATG | 560 | 0.0 | 22.902369 | 40 |
| TCGGAAG | 335 | 0.0 | 22.836401 | 28 |
| CTCGTAT | 555 | 0.0 | 22.703281 | 39 |
| AATGCCG | 915 | 0.0 | 22.61921 | 18 |
| ATGCCGA | 910 | 0.0 | 22.496279 | 19 |
| TGCCGAG | 915 | 0.0 | 22.373348 | 20 |
| ACCGGCA | 605 | 0.0 | 22.31462 | 27 |
| AGACCGG | 590 | 0.0 | 22.116392 | 25 |
| GTATGCC | 585 | 0.0 | 21.923635 | 42 |
| GAGACCG | 610 | 0.0 | 21.391264 | 24 |
| GCGGTTC | 960 | 0.0 | 21.334097 | 5 |
| ATCTCGT | 615 | 0.0 | 20.854189 | 37 |