FastQCFastQC Report
Mon 6 Jun 2016
ERR1391393.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391393.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences609340
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC501.0841177E-940.4802844
TCTCGTA601.5643309E-1037.48174341
GACCGGA552.757588E-936.80025529
ATCTCGT606.4519554E-933.7335740
CTCGTAT708.1672624E-1032.12720542
CCGGACC651.4078978E-831.13867631
ACCGGAC702.8952854E-828.91448630
GAGACCG702.8952854E-828.91448627
TCGTATG803.4069672E-928.11130743
AGACCGG755.6566932E-826.98685528
TCGTATA709.335072E-725.7017659
CGGACCA801.0570693E-725.30017732
CTTCGTA751.700233E-623.992257
CGTATAA802.9835373E-622.48904610
GTATGCC903.2971366E-722.48904245
ATCTTCG908.026502E-620.0610495
CCGAGAC1051.4500401E-619.27632325
AATCTCG1051.4500401E-619.27632339
TCTTCGT1102.1877458E-618.4652846
CCGGCTA1102.262952E-618.40012716