Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378483.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1035250 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTCTATCTCGTATGCC | 2644 | 0.25539724704177735 | Illumina Paired End PCR Primer 2 (97% over 38bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTCTATCTCGTATGCCGTC | 2554 | 0.24670369475971987 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1429 | 0.13803429123400143 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 330 | 0.0 | 37.50427 | 43 |
| ATGCCGT | 375 | 0.0 | 33.003757 | 44 |
| TGCCGTC | 375 | 0.0 | 33.003757 | 45 |
| ACGTCAG | 45 | 0.0012273861 | 24.996807 | 36 |
| CGGAAGA | 690 | 0.0 | 23.50023 | 1 |
| GATCGGA | 250 | 0.0 | 23.39701 | 26 |
| ATCGGAA | 255 | 0.0 | 22.939356 | 27 |
| ATCGTAG | 50 | 0.002265504 | 22.498213 | 34 |
| CGTATGC | 695 | 0.0 | 22.340673 | 44 |
| ACCGCTC | 695 | 0.0 | 22.336355 | 30 |
| AGACCGC | 695 | 0.0 | 22.336355 | 28 |
| TATCTCG | 695 | 0.0 | 22.335278 | 39 |
| TCGTATG | 710 | 0.0 | 21.868687 | 43 |
| CTCGTAT | 710 | 0.0 | 21.866573 | 42 |
| GACCGCT | 715 | 0.0 | 21.711563 | 29 |
| CGCTCTC | 735 | 0.0 | 21.426868 | 32 |
| GAGACCG | 725 | 0.0 | 21.41209 | 27 |
| TCTCGTA | 740 | 0.0 | 20.979076 | 41 |
| CCGCTCT | 740 | 0.0 | 20.978064 | 31 |
| TCGGAAG | 290 | 0.0 | 20.946613 | 28 |