Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378535.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 523786 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACTGTATCTCGTATGCC | 2687 | 0.5129957654461937 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATCTCG | 320 | 0.0 | 43.59375 | 39 |
| CGTACTG | 320 | 0.0 | 43.59375 | 32 |
| CCGTACT | 325 | 0.0 | 42.923077 | 31 |
| CGTATGC | 330 | 0.0 | 42.272728 | 44 |
| ACCGTAC | 330 | 0.0 | 42.272728 | 30 |
| GACCGTA | 325 | 0.0 | 42.23077 | 29 |
| TCTCGTA | 335 | 0.0 | 41.641792 | 41 |
| GAGACCG | 335 | 0.0 | 40.97015 | 27 |
| AGACCGT | 335 | 0.0 | 40.97015 | 28 |
| GCGGTTC | 345 | 0.0 | 40.43478 | 8 |
| TCGTATG | 345 | 0.0 | 40.43478 | 43 |
| AGCGGTT | 350 | 0.0 | 39.857143 | 7 |
| CCGAGAC | 345 | 0.0 | 39.782608 | 25 |
| GTATGCC | 355 | 0.0 | 39.295776 | 45 |
| GAGCGGT | 355 | 0.0 | 39.295776 | 6 |
| ATCTCGT | 360 | 0.0 | 38.75 | 40 |
| CTCGTAT | 360 | 0.0 | 38.75 | 42 |
| AAGAGCG | 365 | 0.0 | 38.219177 | 4 |
| CGGTTCA | 365 | 0.0 | 38.219177 | 9 |
| CGGAAGA | 355 | 0.0 | 37.394367 | 1 |