FastQCFastQC Report
Mon 6 Jun 2016
ERR1391386.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391386.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences750988
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT401.5663896E-533.72937440
GATCGCG453.393842E-530.1220684
TCGTATG300.005161539729.98166743
AACGGGT554.1844323E-628.61695712
AGATCGC607.93246E-626.356813
TCGCGCC450.001197468725.1017236
CGCGCCA450.001231013724.9830577
CACCGCG450.001231013724.9830578
GCGCCCG651.5308524E-524.2143512
CGCCCGG651.5308524E-524.2143513
ATCGCGC500.002211082322.591555
TACGTGC500.002271939322.4862539
CGCCACT1009.105388E-720.2362799
ACGGGTT807.598021E-519.67415813
CGTGAGC1051.3890931E-619.3641871
CCTTCGT851.1668295E-418.6048071
CTTCGTT851.1668295E-418.6048072
TTCACCG851.1668295E-418.6048075
GCGCCAC851.2100066E-418.5168558
TCACCGT1153.3145025E-617.6803446