Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391288.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 343895 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4549 | 1.3227874787362421 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3211 | 0.9337152328472353 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTACGAATCTCGTATGCC | 1979 | 0.5754663487401678 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTACGAATCTCGTATGCCGTC | 1919 | 0.5580191628258626 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1038 | 0.3018363163174806 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 596 | 0.17330871341543203 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGATGAC | 550 | 0.0 | 44.171253 | 18 |
| TAAGCCG | 550 | 0.0 | 44.171253 | 13 |
| CCGATGA | 560 | 0.0 | 43.382484 | 17 |
| GCCGATG | 560 | 0.0 | 43.382484 | 16 |
| GATGACG | 560 | 0.0 | 43.382484 | 19 |
| ACGTCAT | 555 | 0.0 | 43.368008 | 23 |
| CGTCATA | 555 | 0.0 | 43.368008 | 24 |
| AGCCGAT | 565 | 0.0 | 42.998566 | 15 |
| AAGCCGA | 565 | 0.0 | 42.998566 | 14 |
| GACGTCA | 560 | 0.0 | 42.980793 | 22 |
| ATGCCGT | 210 | 0.0 | 42.846897 | 44 |
| TGACGTC | 565 | 0.0 | 42.600433 | 21 |
| GCGGTCT | 465 | 0.0 | 42.08671 | 36 |
| TGCCGTC | 215 | 0.0 | 41.86263 | 45 |
| ATGACGT | 575 | 0.0 | 41.859554 | 20 |
| TATGCCG | 215 | 0.0 | 41.850456 | 43 |
| ATTCGGT | 470 | 0.0 | 41.63898 | 21 |
| CGGTATT | 470 | 0.0 | 41.63898 | 24 |
| TCGGTAT | 470 | 0.0 | 41.63898 | 23 |
| TCGGGGA | 455 | 0.0 | 41.52853 | 14 |