Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378542.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 276456 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACAGATCTCGTATGCC | 2219 | 0.802659374366988 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGTG | 290 | 0.0 | 43.4481 | 29 |
| AGACCGT | 290 | 0.0 | 43.4481 | 28 |
| ACCGTGA | 300 | 0.0 | 42.74983 | 30 |
| ATCTCGT | 295 | 0.0 | 42.711693 | 40 |
| CGTATGC | 295 | 0.0 | 42.711693 | 44 |
| GAGACCG | 295 | 0.0 | 42.711693 | 27 |
| GATCTCG | 295 | 0.0 | 42.711693 | 39 |
| CCGTGAC | 305 | 0.0 | 42.04901 | 31 |
| CTCGTAT | 300 | 0.0 | 41.99983 | 42 |
| TCTCGTA | 300 | 0.0 | 41.99983 | 41 |
| TCGTATG | 300 | 0.0 | 41.99983 | 43 |
| CGAGACC | 300 | 0.0 | 41.249832 | 26 |
| CGTGACA | 315 | 0.0 | 40.714123 | 32 |
| GTATGCC | 325 | 0.0 | 38.769077 | 45 |
| GCGGTTC | 345 | 0.0 | 37.173763 | 8 |
| AAGAGCG | 345 | 0.0 | 37.173763 | 4 |
| CGGTTCA | 345 | 0.0 | 37.173763 | 9 |
| AGAGCGG | 345 | 0.0 | 37.173763 | 5 |
| AGCGGTT | 350 | 0.0 | 36.642708 | 7 |
| GAGCGGT | 350 | 0.0 | 36.642708 | 6 |