Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378576.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 374236 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACTGATCTCGTATGCC | 1708 | 0.45639649846620844 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGACCGA | 170 | 0.0 | 43.676468 | 28 |
| GTATGCC | 185 | 0.0 | 41.351353 | 45 |
| CGTATGC | 180 | 0.0 | 41.25 | 44 |
| CTCGTAT | 180 | 0.0 | 41.25 | 42 |
| ATCTCGT | 190 | 0.0 | 40.263157 | 40 |
| ACCGAGA | 190 | 0.0 | 40.263157 | 30 |
| GACCGAG | 185 | 0.0 | 40.135136 | 29 |
| GAGACCG | 185 | 0.0 | 40.135136 | 27 |
| TCTCGTA | 190 | 0.0 | 39.078945 | 41 |
| TCGTATG | 190 | 0.0 | 39.078945 | 43 |
| CGAGACC | 200 | 0.0 | 37.125004 | 26 |
| GAGCGGT | 225 | 0.0 | 37.0 | 6 |
| AGAGCGG | 225 | 0.0 | 37.0 | 5 |
| GCGGTTC | 230 | 0.0 | 36.195656 | 8 |
| ATGCCGA | 225 | 0.0 | 36.0 | 22 |
| TGCCGAG | 220 | 0.0 | 35.795456 | 23 |
| AGCGGTT | 235 | 0.0 | 35.425533 | 7 |
| CGGTTCA | 230 | 0.0 | 35.217392 | 9 |
| GATCTCG | 225 | 0.0 | 34.0 | 39 |
| AAGAGCG | 245 | 0.0 | 33.97959 | 4 |