Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378369.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 614691 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4304 | 0.7001892007528986 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGGTAACATCTCGTATGCC | 3385 | 0.550683188789164 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGGTAACATCTCGTATGCCGTC | 3154 | 0.5131033315926213 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 440 | 0.0 | 36.301502 | 43 |
| ATGCCGT | 450 | 0.0 | 35.994728 | 44 |
| TGCCGTC | 445 | 0.0 | 35.89362 | 45 |
| AGATCGG | 605 | 0.0 | 32.72248 | 25 |
| ATCGGAA | 605 | 0.0 | 32.72248 | 27 |
| GATCGGA | 610 | 0.0 | 32.45426 | 26 |
| TCGGAAG | 640 | 0.0 | 31.987503 | 28 |
| CCGAGAT | 630 | 0.0 | 31.42397 | 22 |
| CGAGATC | 630 | 0.0 | 31.42397 | 23 |
| GAGATCG | 675 | 0.0 | 29.329037 | 24 |
| AATGCCG | 1435 | 0.0 | 25.867292 | 18 |
| ATGCCGA | 1460 | 0.0 | 25.424358 | 19 |
| TGCCGAG | 1495 | 0.0 | 24.829142 | 20 |
| ACCGCGC | 55 | 1.3685509E-4 | 24.54186 | 9 |
| GAATGCC | 1525 | 0.0 | 24.340698 | 17 |
| GCCGAGA | 1495 | 0.0 | 24.227222 | 21 |
| GGAATGC | 1665 | 0.0 | 22.294033 | 16 |
| AGGAATG | 1730 | 0.0 | 21.456396 | 15 |
| CGGGTAA | 765 | 0.0 | 21.17337 | 29 |
| CCGGGTA | 760 | 0.0 | 21.01666 | 28 |