Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378569.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 339768 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAGCATCTCGTATGCC | 1825 | 0.5371312189494007 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 190 | 0.0 | 39.07831 | 44 |
| CTCGTAT | 190 | 0.0 | 39.07831 | 42 |
| AGACCGA | 190 | 0.0 | 39.07831 | 28 |
| TCGTATG | 190 | 0.0 | 39.07831 | 43 |
| ATCTCGT | 200 | 0.0 | 38.249374 | 40 |
| TCTCGTA | 200 | 0.0 | 38.249374 | 41 |
| GACCGAG | 195 | 0.0 | 38.076298 | 29 |
| ACCGAGT | 200 | 0.0 | 37.124393 | 30 |
| GAGACCG | 200 | 0.0 | 37.124393 | 27 |
| GTATGCC | 200 | 0.0 | 37.124393 | 45 |
| CGAGTAG | 205 | 0.0 | 36.21892 | 32 |
| CATCTCG | 205 | 0.0 | 36.21892 | 39 |
| AAGAGCG | 235 | 0.0 | 35.43017 | 4 |
| CCGAGTA | 210 | 0.0 | 35.356564 | 31 |
| AGAGCGG | 230 | 0.0 | 35.222004 | 5 |
| CGGTTCA | 220 | 0.0 | 34.772156 | 9 |
| CGAGACC | 215 | 0.0 | 34.53432 | 26 |
| AGCGGTT | 230 | 0.0 | 34.238575 | 7 |
| ATCGGAA | 40 | 1.5575197E-5 | 33.749447 | 19 |
| CGGAAGA | 235 | 0.0 | 33.515022 | 1 |