Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378126.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 472600 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1285 | 0.27190012695725774 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATATAATCTCGTATGCCGTC | 1171 | 0.24777824798984344 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 898 | 0.1900126957257723 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATATAATCTCGTATGCC | 847 | 0.1792213288192975 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGATGA | 120 | 0.0 | 41.245342 | 17 |
| GCCGATG | 120 | 0.0 | 41.245342 | 16 |
| AGATTCG | 50 | 1.0750227E-9 | 40.51686 | 10 |
| AGCCGAT | 125 | 0.0 | 39.595528 | 15 |
| ATTCGGT | 155 | 0.0 | 37.73768 | 21 |
| CGGGGAA | 155 | 0.0 | 37.73768 | 15 |
| TTCGGTA | 155 | 0.0 | 37.73768 | 22 |
| GCGGTCT | 150 | 0.0 | 37.49577 | 36 |
| GGCGGTC | 150 | 0.0 | 37.49577 | 35 |
| TCGGTAT | 165 | 0.0 | 36.81403 | 23 |
| ACGTCAT | 135 | 0.0 | 36.66253 | 23 |
| TAAGCCG | 135 | 0.0 | 36.66253 | 13 |
| TATGCCG | 105 | 0.0 | 36.42446 | 43 |
| CGGTATT | 165 | 0.0 | 35.450546 | 24 |
| GATGACG | 140 | 0.0 | 35.353153 | 19 |
| CGTCATA | 140 | 0.0 | 35.353153 | 24 |
| AGGCGGT | 160 | 0.0 | 35.15228 | 34 |
| TGCCGTC | 110 | 0.0 | 34.77984 | 45 |
| AATTCGG | 175 | 0.0 | 34.710365 | 20 |
| GAATTCG | 170 | 0.0 | 34.407883 | 19 |