Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378523.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 342835 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACTACATCTCGTATGCC | 2153 | 0.6279988915950822 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGTA | 235 | 0.0 | 43.085106 | 29 |
| GAGCGGT | 245 | 0.0 | 42.2449 | 6 |
| GAGACCG | 240 | 0.0 | 42.187504 | 27 |
| ACCGTAC | 240 | 0.0 | 42.187504 | 30 |
| CGTACTA | 235 | 0.0 | 42.12766 | 32 |
| AGAGCGG | 250 | 0.0 | 41.399998 | 5 |
| CTCGTAT | 245 | 0.0 | 41.32653 | 42 |
| TCTCGTA | 245 | 0.0 | 41.32653 | 41 |
| AGACCGT | 245 | 0.0 | 41.32653 | 28 |
| AAGAGCG | 255 | 0.0 | 40.588234 | 4 |
| CGGTTCA | 255 | 0.0 | 40.588234 | 9 |
| CGTATGC | 250 | 0.0 | 40.499996 | 44 |
| CCGAGAC | 250 | 0.0 | 40.499996 | 25 |
| TCGTATG | 250 | 0.0 | 40.499996 | 43 |
| CCGTACT | 245 | 0.0 | 40.408165 | 31 |
| GTACTAC | 245 | 0.0 | 40.408165 | 33 |
| ATCTCGT | 255 | 0.0 | 39.705883 | 40 |
| CGGAAGA | 230 | 0.0 | 39.130436 | 1 |
| GCGGTTC | 265 | 0.0 | 39.056602 | 8 |
| GTATGCC | 260 | 0.0 | 38.942307 | 45 |