Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378530.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 342484 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTATCAATCTCGTATGCC | 2247 | 0.6560890435757583 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGCTATC | 240 | 0.0 | 43.122623 | 32 |
| CCGCTAT | 245 | 0.0 | 42.24257 | 31 |
| AATCTCG | 245 | 0.0 | 42.24257 | 39 |
| CTCGTAT | 250 | 0.0 | 41.397717 | 42 |
| ATCTCGT | 255 | 0.0 | 40.586 | 40 |
| TCTCGTA | 255 | 0.0 | 40.586 | 41 |
| TCGTATG | 255 | 0.0 | 40.586 | 43 |
| ACCGCTA | 260 | 0.0 | 39.805496 | 30 |
| GTATGCC | 260 | 0.0 | 39.805496 | 45 |
| AGACCGC | 260 | 0.0 | 39.805496 | 28 |
| GAGACCG | 265 | 0.0 | 39.05445 | 27 |
| CGTATGC | 270 | 0.0 | 38.33122 | 44 |
| CCGAGAC | 270 | 0.0 | 38.33122 | 25 |
| GACCGCT | 275 | 0.0 | 37.63429 | 29 |
| GCTATCA | 280 | 0.0 | 36.96225 | 33 |
| GAGCGGT | 280 | 0.0 | 36.158722 | 6 |
| AAGAGCG | 290 | 0.0 | 35.703323 | 4 |
| AGAGCGG | 285 | 0.0 | 35.53992 | 5 |
| CGAGACC | 300 | 0.0 | 35.248055 | 26 |
| GCGGTTC | 290 | 0.0 | 34.91187 | 8 |