Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391316.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 872164 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 2181 | 0.25006764782770213 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACATAATCTCGTATGCC | 1977 | 0.22667755146967775 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGAACAT | 265 | 0.0 | 37.340168 | 32 |
| CGTATGC | 265 | 0.0 | 36.49362 | 44 |
| CTCGTAT | 280 | 0.0 | 35.341827 | 42 |
| TCTCGTA | 275 | 0.0 | 35.16658 | 41 |
| TCGTATG | 280 | 0.0 | 34.5386 | 43 |
| CCGAACA | 280 | 0.0 | 34.536625 | 31 |
| GATCGGA | 290 | 0.0 | 34.123142 | 18 |
| ATCTCGT | 285 | 0.0 | 33.932663 | 40 |
| AGATCGG | 295 | 0.0 | 33.54286 | 17 |
| TCGGAAG | 295 | 0.0 | 32.782402 | 20 |
| ATCGGAA | 315 | 0.0 | 31.414959 | 19 |
| GTATGCC | 310 | 0.0 | 31.19616 | 45 |
| ACCGAAC | 310 | 0.0 | 31.19437 | 30 |
| GACCGAA | 320 | 0.0 | 30.922327 | 29 |
| AGACCGA | 330 | 0.0 | 30.666769 | 28 |
| GAGACCG | 345 | 0.0 | 28.029722 | 27 |
| AATCTCG | 350 | 0.0 | 27.630884 | 39 |
| CATAATC | 430 | 0.0 | 23.53631 | 36 |
| CGAGACC | 425 | 0.0 | 23.282692 | 26 |
| GAGATCG | 435 | 0.0 | 22.747458 | 16 |