Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378368.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 401540 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3957 | 0.9854559944214772 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAAGATCTCGTATGCC | 3535 | 0.8803606116451661 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAAGATCTCGTATGCCGTC | 2765 | 0.6885988942571101 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 561 | 0.13971210838272652 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 325 | 0.0 | 40.154068 | 43 |
| ATGCCGT | 360 | 0.0 | 36.2502 | 44 |
| TGCCGTC | 365 | 0.0 | 35.753624 | 45 |
| GAGATCG | 550 | 0.0 | 35.586674 | 24 |
| AGATCGG | 555 | 0.0 | 35.266075 | 25 |
| ATCGGAA | 580 | 0.0 | 33.745987 | 27 |
| GATCGGA | 595 | 0.0 | 33.27335 | 26 |
| TCGGAAG | 610 | 0.0 | 33.19277 | 28 |
| CCGAGAT | 590 | 0.0 | 33.17402 | 22 |
| CGAGATC | 610 | 0.0 | 32.086346 | 23 |
| CGTTGGA | 50 | 7.110442E-5 | 27.020342 | 5 |
| CGTATGC | 780 | 0.0 | 24.80783 | 44 |
| TCGTATG | 780 | 0.0 | 24.80783 | 43 |
| GTATGCC | 785 | 0.0 | 24.649817 | 45 |
| ACCGGCT | 780 | 0.0 | 24.516314 | 30 |
| GAGACCG | 790 | 0.0 | 24.490757 | 27 |
| AGACCGG | 785 | 0.0 | 24.360159 | 28 |
| CTCGTAT | 795 | 0.0 | 24.336725 | 42 |
| TCTCGTA | 795 | 0.0 | 24.336725 | 41 |
| CCGGCTA | 790 | 0.0 | 24.20598 | 31 |