Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378518.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 441679 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGATAATCTCGTATGCC | 2163 | 0.48972217379590155 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 270 | 0.0 | 43.333225 | 44 |
| TCTCGTA | 270 | 0.0 | 43.333225 | 41 |
| CCGTAGA | 275 | 0.0 | 42.545345 | 31 |
| CGTAGAT | 275 | 0.0 | 42.545345 | 32 |
| GACCGTA | 270 | 0.0 | 42.499893 | 29 |
| ATCTCGT | 280 | 0.0 | 41.78561 | 40 |
| ACCGTAG | 285 | 0.0 | 41.05253 | 30 |
| AGACCGT | 280 | 0.0 | 40.98204 | 28 |
| CGAGACC | 275 | 0.0 | 40.90899 | 26 |
| GATAATC | 295 | 0.0 | 40.423626 | 36 |
| CTCGTAT | 290 | 0.0 | 40.34473 | 42 |
| AATCTCG | 290 | 0.0 | 40.34473 | 39 |
| TCGTATG | 290 | 0.0 | 40.34473 | 43 |
| GCGGTTC | 295 | 0.0 | 39.660915 | 8 |
| GAGACCG | 290 | 0.0 | 39.56887 | 27 |
| GAGCGGT | 300 | 0.0 | 38.9999 | 6 |
| ATGCCGA | 295 | 0.0 | 38.898205 | 22 |
| AGAGCGG | 310 | 0.0 | 38.467644 | 5 |
| AGCGGTT | 305 | 0.0 | 38.360558 | 7 |
| CGGTTCA | 310 | 0.0 | 37.74184 | 9 |