Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378553.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 329291 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGTACATCTCGTATGCC | 2285 | 0.6939151085210346 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGAGTA | 270 | 0.0 | 43.333336 | 32 |
| GACCGGA | 265 | 0.0 | 43.301888 | 29 |
| TCTCGTA | 275 | 0.0 | 42.545456 | 41 |
| TCGTATG | 275 | 0.0 | 42.545456 | 43 |
| AGACCGG | 270 | 0.0 | 42.500004 | 28 |
| CGTATGC | 280 | 0.0 | 41.785713 | 44 |
| CCGGAGT | 280 | 0.0 | 41.785713 | 31 |
| CATCTCG | 280 | 0.0 | 41.785713 | 39 |
| CTCGTAT | 285 | 0.0 | 41.05263 | 42 |
| GAGACCG | 280 | 0.0 | 40.98214 | 27 |
| AGATCGG | 50 | 1.0768417E-9 | 40.5 | 17 |
| GATCGGA | 50 | 1.0768417E-9 | 40.5 | 18 |
| TCGGAAG | 50 | 1.0768417E-9 | 40.5 | 20 |
| ATCTCGT | 295 | 0.0 | 39.66102 | 40 |
| ACCGGAG | 295 | 0.0 | 39.66102 | 30 |
| GGAGTAC | 300 | 0.0 | 39.0 | 33 |
| AGAGCGG | 315 | 0.0 | 37.857143 | 5 |
| GTATGCC | 310 | 0.0 | 37.741936 | 45 |
| CGGTTCA | 320 | 0.0 | 37.265625 | 9 |
| CGAGACC | 310 | 0.0 | 37.01613 | 26 |