FastQCFastQC Report
Mon 6 Jun 2016
ERR1391355.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391355.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences778924
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC401.5630343E-533.74017744
GATCGGA855.456968E-1231.75138318
AGATCGG855.456968E-1231.74934417
CGTATAA654.890626E-727.67891710
ATCGGAA1058.54925E-1125.703519
TCGTATG450.00122828224.99272343
GACCGTT450.001229201924.98951529
TCGGAAG1101.5279511E-1024.53515820
CTCGTAT500.00226779222.4934542
ACCGTTG500.002269484822.49056230
CCGAGAC1401.364242E-1020.88677645
GCGGTTC1301.2314558E-920.76051928
GAGCGGT1301.2332748E-920.75918826
AGAGCGG1301.2332748E-920.75918825
CGGTTCA1351.9717845E-919.99161129
CCGTTGT600.00652443618.74213631
CGGAAGA1454.791218E-918.6128821
AAGAGCG1454.791218E-918.6128824
ATCTTCG1001.9977542E-518.0492275
TCTCGTA750.001111956117.9947641