Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378169.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1358258 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAGAATCTCGTATGCC | 1776 | 0.13075571798583185 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 295 | 0.0 | 38.900246 | 44 |
| CTCGTAT | 290 | 0.0 | 38.793613 | 42 |
| TCGTATG | 305 | 0.0 | 38.36116 | 43 |
| GACCGTG | 305 | 0.0 | 36.88573 | 29 |
| GATCGGA | 110 | 0.0 | 36.8146 | 18 |
| CCGTGCA | 315 | 0.0 | 35.714752 | 31 |
| TCTCGTA | 330 | 0.0 | 34.773182 | 41 |
| AGACCGT | 330 | 0.0 | 33.409527 | 28 |
| ATCTCGT | 360 | 0.0 | 31.875418 | 40 |
| AATCTCG | 360 | 0.0 | 31.875418 | 39 |
| AGATCGG | 135 | 0.0 | 31.663586 | 17 |
| GAGACCG | 360 | 0.0 | 30.6254 | 27 |
| CGTGCAG | 390 | 0.0 | 28.84653 | 32 |
| AGCGGTT | 390 | 0.0 | 28.843344 | 7 |
| GTATGCC | 395 | 0.0 | 28.482435 | 45 |
| GAGCGGT | 400 | 0.0 | 28.127438 | 6 |
| ATCGGAA | 145 | 0.0 | 27.928316 | 19 |
| GCGGTTC | 410 | 0.0 | 27.436354 | 8 |
| AGAGCGG | 415 | 0.0 | 27.110785 | 5 |
| ACCGTGC | 425 | 0.0 | 27.000355 | 30 |