FastQCFastQC Report
Mon 6 Jun 2016
ERR1391234.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391234.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences596691
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA52080.872813566821018No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA36990.6199188524713797No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGATAATCTCGTATGCCGTC7810.13088851683702285Illumina Paired End PCR Primer 2 (96% over 30bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA7590.12720151636274052No Hit
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGATAATCTCGTATGCC7110.11915715169157906Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCATA5550.043.77799624
TAAGCCG5500.043.7669413
ACGTCAT5650.043.00316223
AGATTCG950.042.6438110
ATGACGT5700.042.62594220
CGATGAC5700.042.62594218
AAGCCGA5650.042.60498414
GACGTCA5800.042.27889322
GCCGATG5750.042.2552816
GATGACG5750.042.2552819
TGACGTC5850.041.5329721
AGCCGAT5900.041.18099215
ATAAGCC5950.040.45683312
CCGATGA6050.040.15997717
TCGGGGA5550.040.1298314
TTCGGTA5350.039.94798722
TTCCTCG4350.039.83901610
AGGCGGT5400.039.578134
CGGTATT5400.039.578124
TCGGTAT5400.039.578123