Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391246.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 669471 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4368 | 0.652455446165704 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3256 | 0.4863541512627134 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGATCTATCTCGTATGCCGTC | 753 | 0.11247686606290638 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 670 | 0.10007901761241338 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGTATT | 395 | 0.0 | 43.287834 | 24 |
| TCGGTAT | 395 | 0.0 | 43.287834 | 23 |
| TTCGGTA | 405 | 0.0 | 42.218998 | 22 |
| TTCGGGG | 75 | 0.0 | 41.99679 | 13 |
| CGTCATA | 440 | 0.0 | 41.928616 | 24 |
| GACGTCA | 435 | 0.0 | 41.893353 | 22 |
| GCCGATG | 430 | 0.0 | 41.857265 | 16 |
| AGGCGGT | 410 | 0.0 | 41.704132 | 34 |
| AGCCGAT | 435 | 0.0 | 41.376152 | 15 |
| ATTCGGT | 415 | 0.0 | 41.20167 | 21 |
| CGGGGAA | 425 | 0.0 | 40.761593 | 15 |
| TCGGGGA | 420 | 0.0 | 40.711178 | 14 |
| GGCGGTC | 420 | 0.0 | 40.711178 | 35 |
| CGGTCTC | 420 | 0.0 | 40.711178 | 37 |
| ACGTCAT | 460 | 0.0 | 40.594723 | 23 |
| TGCCGTC | 100 | 0.0 | 40.50598 | 45 |
| ATGACGT | 445 | 0.0 | 40.446346 | 20 |
| AATTCGG | 425 | 0.0 | 40.23222 | 20 |
| TTCCTCG | 355 | 0.0 | 39.93548 | 10 |
| GCGGTCT | 430 | 0.0 | 39.764404 | 36 |