Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378148.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1070934 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCC | 1236 | 0.11541327476763273 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGATAC | 160 | 0.0 | 39.37324 | 31 |
| GACCGAT | 150 | 0.0 | 38.99644 | 29 |
| TCGTATG | 175 | 0.0 | 37.28231 | 43 |
| ACCGATA | 170 | 0.0 | 37.05544 | 30 |
| CTCGTAT | 175 | 0.0 | 35.998394 | 42 |
| TCTCGTA | 175 | 0.0 | 35.998394 | 41 |
| CGATACT | 175 | 0.0 | 35.998394 | 32 |
| CGTATGC | 180 | 0.0 | 34.998436 | 44 |
| ATCTCGT | 195 | 0.0 | 32.30625 | 40 |
| AGACCGA | 190 | 0.0 | 30.786661 | 28 |
| GCGGTTC | 200 | 0.0 | 30.37081 | 8 |
| AGCGGTT | 210 | 0.0 | 28.924582 | 7 |
| CATCTCG | 230 | 0.0 | 28.3683 | 39 |
| GAGACCG | 215 | 0.0 | 27.20555 | 27 |
| CGGTTCA | 230 | 0.0 | 26.409399 | 9 |
| TCGGAAG | 90 | 1.19252945E-8 | 24.996548 | 20 |
| CGGAAGA | 245 | 0.0 | 24.820309 | 1 |
| GAGCGGT | 245 | 0.0 | 24.809872 | 6 |
| AAGAGCG | 255 | 0.0 | 23.836937 | 4 |
| AGAGCGG | 260 | 0.0 | 23.378532 | 5 |