Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378501.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 831425 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCCGTC | 2885 | 0.34699461767447454 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCC | 2671 | 0.3212556754968879 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1440 | 0.1731966202603963 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 255 | 0.0 | 34.421104 | 43 |
| TGCCGTC | 275 | 0.0 | 31.91775 | 45 |
| ATGCCGT | 305 | 0.0 | 28.7783 | 44 |
| GATCGGA | 275 | 0.0 | 26.179472 | 26 |
| ATCGGAA | 280 | 0.0 | 25.711985 | 27 |
| TCGGAAG | 305 | 0.0 | 25.07972 | 28 |
| AGATCGG | 310 | 0.0 | 23.94947 | 25 |
| ACCGAGT | 560 | 0.0 | 23.301485 | 30 |
| CTCGTAT | 560 | 0.0 | 22.908 | 42 |
| CGAGTGT | 560 | 0.0 | 22.899736 | 32 |
| CCGAGTG | 580 | 0.0 | 22.497986 | 31 |
| AGACCGA | 570 | 0.0 | 22.497984 | 28 |
| CGTATGC | 575 | 0.0 | 22.3104 | 44 |
| TCGTATG | 575 | 0.0 | 22.3104 | 43 |
| TCTCGTA | 575 | 0.0 | 22.307716 | 41 |
| CGGAAGA | 615 | 0.0 | 21.604221 | 1 |
| GAGACCG | 600 | 0.0 | 21.373087 | 27 |
| GACCGAG | 615 | 0.0 | 21.217611 | 29 |
| ATCTCGT | 610 | 0.0 | 21.022707 | 40 |
| GTATGCC | 660 | 0.0 | 19.437094 | 45 |