Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378321.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1080596 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5087 | 0.47075872944190056 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGTACATCTCGTATGCCGTC | 4687 | 0.4337421200892841 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGTACATCTCGTATGCC | 4619 | 0.42744929649933927 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 555 | 0.0 | 41.346504 | 43 |
| ATGCCGT | 565 | 0.0 | 40.614708 | 44 |
| TGCCGTC | 585 | 0.0 | 39.22617 | 45 |
| GATCGGA | 595 | 0.0 | 32.895306 | 26 |
| AGATCGG | 600 | 0.0 | 32.621174 | 25 |
| ATCGGAA | 600 | 0.0 | 32.621174 | 27 |
| TCGGAAG | 735 | 0.0 | 29.690397 | 28 |
| GAGATCG | 715 | 0.0 | 27.374413 | 24 |
| AATGCCG | 1665 | 0.0 | 26.6185 | 18 |
| ATGCCGA | 1670 | 0.0 | 26.538805 | 19 |
| CCGAGAT | 765 | 0.0 | 26.467485 | 22 |
| CGAGATC | 765 | 0.0 | 26.173403 | 23 |
| TGCCGAG | 1705 | 0.0 | 25.99402 | 20 |
| GAATGCC | 1865 | 0.0 | 23.8846 | 17 |
| GCCGAGA | 1775 | 0.0 | 23.828194 | 21 |
| GGAATGC | 1950 | 0.0 | 22.958847 | 16 |
| TCTCGTA | 1010 | 0.0 | 22.497362 | 38 |
| GTCGGAA | 90 | 3.290279E-7 | 22.497362 | 27 |
| CGTATGC | 1030 | 0.0 | 22.278942 | 41 |
| CTCGTAT | 1030 | 0.0 | 22.278942 | 39 |