Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378540.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 478678 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTCTAATCTCGTATGCC | 2783 | 0.5813929196662474 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 310 | 0.0 | 42.09599 | 44 |
| CTCGTAT | 310 | 0.0 | 42.09599 | 42 |
| TCGTATG | 310 | 0.0 | 42.09599 | 43 |
| TCTCGTA | 310 | 0.0 | 41.370197 | 41 |
| GACCGTG | 330 | 0.0 | 39.544716 | 29 |
| GAGACCG | 330 | 0.0 | 39.544716 | 27 |
| AATCTCG | 330 | 0.0 | 38.86291 | 39 |
| AGACCGT | 340 | 0.0 | 38.381638 | 28 |
| ATCTCGT | 335 | 0.0 | 38.28287 | 40 |
| CCGTGTC | 345 | 0.0 | 37.825386 | 31 |
| CCGAGAC | 335 | 0.0 | 37.611244 | 25 |
| GCGGTTC | 350 | 0.0 | 37.28502 | 8 |
| CGGTTCA | 350 | 0.0 | 37.28502 | 9 |
| GTATGCC | 350 | 0.0 | 37.28502 | 45 |
| CGTGTCT | 350 | 0.0 | 37.28502 | 32 |
| ACCGTGT | 350 | 0.0 | 37.28502 | 30 |
| TGCCGAG | 350 | 0.0 | 36.642174 | 23 |
| AGCGGTT | 365 | 0.0 | 35.75276 | 7 |
| CGGAAGA | 360 | 0.0 | 35.635506 | 1 |
| ATGCCGA | 360 | 0.0 | 35.624336 | 22 |