FastQCFastQC Report
Mon 6 Jun 2016
ERR1391162.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391162.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1063738
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA27690.26030845941387826No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT19210.1805895812690719Illumina Paired End PCR Primer 2 (96% over 30bp)
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA17730.1666763808381387No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCCGTC13650.12832107154205266Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGAGT207.034134E-444.99859231
CGATGAC2600.040.67180318
GGCGGTC2400.039.37376435
AGGCGGT2450.038.5702234
CGGTATT2450.038.5702224
CCGATGA2750.038.45334217
AATTCGG2450.037.65188220
ATTCGGT2500.036.8988421
TTCGGTA2500.036.8988422
GAATTCG2500.036.8988419
TCGGTAT2500.036.8988423
AGCCGAT2900.036.46437515
TGACGTC2900.036.46437521
GCCGATG2900.036.46437516
CGTCATA2900.036.46437524
GACGTCA2950.035.84633322
ACGTCAT2950.035.84633323
TAAGCCG2950.035.84633313
TGCCGTC1450.035.68853845
GATGACG3100.034.83761619