Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378370.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 544415 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2140 | 0.3930824830322456 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGAACACATCTCGTATGCCGTC | 1696 | 0.31152705197321895 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAACACATCTCGTATGCC | 1600 | 0.29389344525775374 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 210 | 0.0 | 39.63849 | 43 |
| TGTTCGC | 25 | 0.002107276 | 35.996033 | 29 |
| ATGCCGT | 225 | 0.0 | 35.99603 | 44 |
| TGCCGTC | 230 | 0.0 | 35.21351 | 45 |
| ATCGGAA | 310 | 0.0 | 32.65769 | 27 |
| GATCGGA | 315 | 0.0 | 32.139313 | 26 |
| AGATCGG | 330 | 0.0 | 30.678436 | 25 |
| TCGGAAG | 330 | 0.0 | 30.678436 | 28 |
| CGGTTAA | 30 | 0.00514768 | 29.996693 | 23 |
| CGAGATC | 385 | 0.0 | 27.464504 | 23 |
| GAGATCG | 385 | 0.0 | 27.464504 | 24 |
| CCGAGAT | 400 | 0.0 | 26.997025 | 22 |
| AATGCCG | 720 | 0.0 | 26.872038 | 18 |
| ATGCCGA | 725 | 0.0 | 26.686712 | 19 |
| TGCCGAG | 735 | 0.0 | 26.629719 | 20 |
| TCTCGTA | 330 | 0.0 | 25.224493 | 38 |
| GCCGAGA | 765 | 0.0 | 24.997244 | 21 |
| GACCGGA | 335 | 0.0 | 24.848005 | 26 |
| CTCGTAT | 340 | 0.0 | 24.482595 | 39 |
| ATCTCGT | 350 | 0.0 | 24.425879 | 37 |