Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378331.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 929203 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCAGTATCTCGTATGCC | 3148 | 0.3387849587226903 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2774 | 0.2985354115300962 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCAGTATCTCGTATGCCGTC | 2593 | 0.27905635259464295 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGATCGG | 435 | 0.0 | 34.133686 | 25 |
| GATCGGA | 435 | 0.0 | 34.133686 | 26 |
| TATGCCG | 320 | 0.0 | 33.7458 | 43 |
| ATGCCGT | 315 | 0.0 | 33.567253 | 44 |
| ATCGGAA | 450 | 0.0 | 32.9959 | 27 |
| AAGCGCA | 30 | 0.0051498883 | 29.996267 | 10 |
| TGCCGTC | 355 | 0.0 | 29.785028 | 45 |
| TCGGAAG | 515 | 0.0 | 29.705044 | 28 |
| CCGAGAT | 515 | 0.0 | 28.831366 | 22 |
| GAGATCG | 535 | 0.0 | 27.75356 | 24 |
| CGAGATC | 565 | 0.0 | 26.279919 | 23 |
| AATGCCG | 1115 | 0.0 | 23.001623 | 18 |
| ATGCCGA | 1140 | 0.0 | 22.497204 | 19 |
| TGCCGAG | 1150 | 0.0 | 22.301575 | 20 |
| GAATGCC | 1230 | 0.0 | 21.03397 | 17 |
| TATCTCG | 605 | 0.0 | 20.823854 | 39 |
| GCCGAGA | 1225 | 0.0 | 20.75252 | 21 |
| GACCGTT | 615 | 0.0 | 20.119448 | 29 |
| ACCGTTC | 615 | 0.0 | 20.119448 | 30 |
| CGTTCAG | 630 | 0.0 | 19.997513 | 32 |