Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378315.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1010159 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCTAATATCTCGTATGCC | 4952 | 0.4902198564780396 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4314 | 0.4270614824002954 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCTAATATCTCGTATGCCGTC | 4090 | 0.40488675545136954 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 515 | 0.0 | 40.190285 | 43 |
| ATGCCGT | 525 | 0.0 | 38.996223 | 44 |
| TGCCGTC | 550 | 0.0 | 37.63272 | 45 |
| ATCGGAA | 545 | 0.0 | 30.960304 | 27 |
| GATCGGA | 570 | 0.0 | 30.786493 | 26 |
| AGATCGG | 570 | 0.0 | 29.997095 | 25 |
| TCGGAAG | 610 | 0.0 | 28.767706 | 28 |
| CCGAGAT | 665 | 0.0 | 26.388424 | 22 |
| CGAGATC | 665 | 0.0 | 26.388424 | 23 |
| GAGATCG | 705 | 0.0 | 24.891207 | 24 |
| AATGCCG | 1735 | 0.0 | 22.562656 | 18 |
| ATGCCGA | 1780 | 0.0 | 22.118647 | 19 |
| TGCCGAG | 1750 | 0.0 | 22.112146 | 20 |
| TCTCGTA | 1080 | 0.0 | 21.872883 | 41 |
| CGTATGC | 1075 | 0.0 | 21.765335 | 44 |
| CTCGTAT | 1075 | 0.0 | 21.765335 | 42 |
| TCGTATG | 1080 | 0.0 | 21.66457 | 43 |
| TATCTCG | 1090 | 0.0 | 21.46581 | 39 |
| CGCCTAA | 1095 | 0.0 | 21.367794 | 32 |
| GTATGCC | 1100 | 0.0 | 21.270668 | 45 |