Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378212.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 423425 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6709 | 1.584460057861487 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCCGTC | 4114 | 0.9716006376572002 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCC | 3342 | 0.7892779122630927 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 948 | 0.2238885280746295 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 475 | 0.0 | 42.157673 | 44 |
| TATGCCG | 485 | 0.0 | 41.75236 | 43 |
| TGCCGTC | 500 | 0.0 | 40.949787 | 45 |
| AGATCGG | 915 | 0.0 | 37.622753 | 25 |
| CCGAGAT | 935 | 0.0 | 37.299267 | 22 |
| GATCGGA | 925 | 0.0 | 37.216022 | 26 |
| TCGGAAG | 980 | 0.0 | 36.964092 | 28 |
| GAGATCG | 940 | 0.0 | 36.622154 | 24 |
| ATCGGAA | 945 | 0.0 | 36.428383 | 27 |
| CGAGATC | 965 | 0.0 | 36.372868 | 23 |
| CGTTACA | 25 | 0.002105663 | 35.999813 | 44 |
| GAACCGC | 25 | 0.002105663 | 35.999813 | 11 |
| ACCGCTC | 35 | 2.8174752E-4 | 32.14269 | 13 |
| AATGCCG | 1895 | 0.0 | 30.39562 | 18 |
| TGCCGAG | 1905 | 0.0 | 30.117952 | 20 |
| ATGCCGA | 1915 | 0.0 | 30.07817 | 19 |
| TCTTCCG | 30 | 0.0051437616 | 29.999844 | 18 |
| AGGTCGG | 60 | 2.4129804E-7 | 29.999844 | 25 |
| GCCGAGA | 1890 | 0.0 | 29.285563 | 21 |
| GAATGCC | 2000 | 0.0 | 28.79985 | 17 |