Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391301.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 735528 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3986 | 0.5419236249333812 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2701 | 0.3672191949184803 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCCGTC | 2675 | 0.3636843192917197 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCC | 2286 | 0.3107971416451855 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1288 | 0.17511230027952707 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GGCGGTC | 350 | 0.0 | 44.35372 | 35 |
| AGGCGGT | 360 | 0.0 | 43.121677 | 34 |
| ATTCGGT | 360 | 0.0 | 43.118744 | 21 |
| TTCGGTA | 365 | 0.0 | 42.52808 | 22 |
| CGTCATA | 385 | 0.0 | 42.07468 | 24 |
| AGCCGAT | 385 | 0.0 | 42.07182 | 15 |
| GCGGTCT | 370 | 0.0 | 41.956226 | 36 |
| CGGTATT | 370 | 0.0 | 41.956226 | 24 |
| TCGGTAT | 370 | 0.0 | 41.956226 | 23 |
| AATTCGG | 370 | 0.0 | 41.953373 | 20 |
| AGATTCG | 65 | 0.0 | 41.54938 | 10 |
| GCCGATG | 390 | 0.0 | 41.532436 | 16 |
| TGCCGTC | 320 | 0.0 | 41.506573 | 45 |
| TATGCCG | 320 | 0.0 | 41.478355 | 43 |
| TTCCTCG | 315 | 0.0 | 41.439465 | 10 |
| TCGGGGA | 375 | 0.0 | 41.393997 | 14 |
| GAATTCG | 370 | 0.0 | 41.345352 | 19 |
| CTCGGGG | 315 | 0.0 | 40.70838 | 13 |
| GACGTCA | 405 | 0.0 | 40.549675 | 22 |
| CCGATGA | 400 | 0.0 | 40.494125 | 17 |