Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378225.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 864905 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3920 | 0.4532289673432342 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAGAATCTCGTATGCCGTC | 2905 | 0.3358750382990039 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAGAATCTCGTATGCC | 2408 | 0.2784120799394153 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 380 | 0.0 | 37.893375 | 43 |
| TGCCGTC | 420 | 0.0 | 34.820175 | 45 |
| ATGCCGT | 425 | 0.0 | 33.35174 | 44 |
| GATCGGA | 610 | 0.0 | 31.720171 | 26 |
| ATCGGAA | 615 | 0.0 | 31.096443 | 27 |
| TCGGAAG | 635 | 0.0 | 30.471344 | 28 |
| AGATCGG | 640 | 0.0 | 30.233288 | 25 |
| GAGATCG | 670 | 0.0 | 29.886984 | 24 |
| CCGAGAT | 700 | 0.0 | 27.96328 | 22 |
| AATGCCG | 1250 | 0.0 | 26.819035 | 18 |
| CGAGATC | 750 | 0.0 | 26.399052 | 23 |
| ATGCCGA | 1280 | 0.0 | 26.190464 | 19 |
| TGCCGAG | 1290 | 0.0 | 25.987436 | 20 |
| CGAGAAT | 585 | 0.0 | 25.383703 | 32 |
| TCTCGTA | 570 | 0.0 | 25.26225 | 38 |
| GCCGAGA | 1345 | 0.0 | 25.259315 | 21 |
| TCCCGTA | 45 | 0.0012265664 | 24.9991 | 24 |
| CGTATGC | 590 | 0.0 | 24.405903 | 41 |
| CTCGTAT | 590 | 0.0 | 24.405903 | 39 |
| ACCGTCG | 595 | 0.0 | 24.20081 | 27 |