Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378180.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 739168 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACATGATCTCGTATGCC | 1466 | 0.19833109658426773 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACCGGAC | 190 | 0.0 | 43.81579 | 30 |
| TCGTATG | 200 | 0.0 | 42.744217 | 43 |
| CGTATGC | 205 | 0.0 | 41.704494 | 44 |
| GACCGGA | 200 | 0.0 | 41.625 | 29 |
| TCTCGTA | 215 | 0.0 | 39.76475 | 41 |
| AGACCGG | 210 | 0.0 | 39.642853 | 28 |
| CGGACAT | 215 | 0.0 | 38.720932 | 32 |
| CCGGACA | 215 | 0.0 | 38.720932 | 31 |
| CTCGTAT | 225 | 0.0 | 37.99743 | 42 |
| CGGAAGA | 220 | 0.0 | 37.871655 | 1 |
| GCGGTTC | 235 | 0.0 | 37.335373 | 8 |
| GAGCGGT | 230 | 0.0 | 37.186493 | 6 |
| AGCGGTT | 235 | 0.0 | 36.378056 | 7 |
| CGGTTCA | 250 | 0.0 | 35.99513 | 9 |
| GAGACCG | 240 | 0.0 | 35.620182 | 27 |
| TGCCGAG | 250 | 0.0 | 35.097626 | 23 |
| GTATGCC | 255 | 0.0 | 34.40944 | 45 |
| AGAGCGG | 250 | 0.0 | 34.211575 | 5 |
| ATCTCGT | 250 | 0.0 | 34.2 | 40 |
| CCGAGAC | 260 | 0.0 | 33.74772 | 25 |