Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378450.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 938003 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATACTATCTCGTATGCCGTC | 1950 | 0.20788846091110585 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATACTATCTCGTATGCC | 1202 | 0.1281445794949483 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1121 | 0.11950921265710236 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 305 | 0.0 | 36.88752 | 43 |
| ATGCCGT | 320 | 0.0 | 36.56475 | 44 |
| TGCCGTC | 365 | 0.0 | 30.823816 | 45 |
| CGCATAC | 435 | 0.0 | 25.342337 | 29 |
| CGTATGC | 445 | 0.0 | 25.28111 | 41 |
| CTCGTAT | 450 | 0.0 | 24.997541 | 39 |
| CCGCATA | 450 | 0.0 | 24.497591 | 28 |
| TCTCGTA | 460 | 0.0 | 24.454117 | 38 |
| TATCTCG | 470 | 0.0 | 24.412495 | 36 |
| TCGTATG | 490 | 0.0 | 23.875204 | 40 |
| ATCTCGT | 475 | 0.0 | 23.681883 | 37 |
| AGACCGC | 470 | 0.0 | 23.455141 | 25 |
| ACCGCAT | 480 | 0.0 | 23.435196 | 27 |
| TACTATC | 495 | 0.0 | 23.179539 | 33 |
| ACGCCCG | 50 | 0.0022655956 | 22.497787 | 12 |
| GACCGCA | 490 | 0.0 | 22.497787 | 26 |
| GAGACCG | 500 | 0.0 | 22.047832 | 24 |
| GATCGGA | 275 | 0.0 | 21.270634 | 26 |
| AGAGCGG | 825 | 0.0 | 21.009132 | 2 |
| GAGCGGT | 830 | 0.0 | 20.881458 | 3 |