Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378202.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 599880 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6244 | 1.0408748416349936 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGTATATCTCGTATGCC | 3972 | 0.662132426485297 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGTATATCTCGTATGCCGTC | 3716 | 0.619457224778289 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 894 | 0.14902980596119222 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 480 | 0.0 | 41.251377 | 44 |
| TATGCCG | 480 | 0.0 | 40.78261 | 43 |
| TGCCGTC | 495 | 0.0 | 40.00467 | 45 |
| ATCGGAA | 775 | 0.0 | 33.675735 | 27 |
| GATCGGA | 785 | 0.0 | 33.246742 | 26 |
| AGATCGG | 775 | 0.0 | 33.09512 | 25 |
| CCGAGAT | 785 | 0.0 | 32.960133 | 22 |
| TCGGAAG | 840 | 0.0 | 32.14125 | 28 |
| CGAGATC | 800 | 0.0 | 32.060898 | 23 |
| GAGATCG | 830 | 0.0 | 30.630997 | 24 |
| AGCGCAT | 40 | 6.164482E-4 | 28.123594 | 35 |
| AATGCCG | 1750 | 0.0 | 27.127214 | 18 |
| ATGCCGA | 1745 | 0.0 | 26.947075 | 19 |
| TGCCGAG | 1785 | 0.0 | 26.34322 | 20 |
| GCCGAGA | 1785 | 0.0 | 25.586956 | 21 |
| GAATGCC | 1880 | 0.0 | 25.371073 | 17 |
| GGAATGC | 1895 | 0.0 | 25.05152 | 16 |
| GGTCGGA | 45 | 0.0012262289 | 24.998749 | 26 |
| GTCGGAA | 45 | 0.0012262289 | 24.998749 | 27 |
| AGGAATG | 2010 | 0.0 | 23.842093 | 15 |