Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378526.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 343028 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACACTATCTCGTATGCC | 2143 | 0.6247303427125482 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 215 | 0.0 | 42.905586 | 44 |
| GACCGTA | 215 | 0.0 | 42.905586 | 29 |
| TCTCGTA | 215 | 0.0 | 42.905586 | 41 |
| TCGTATG | 215 | 0.0 | 42.905586 | 43 |
| ACCGTAC | 215 | 0.0 | 42.905586 | 30 |
| ATCTCGT | 220 | 0.0 | 41.93046 | 40 |
| CTCGTAT | 220 | 0.0 | 41.93046 | 42 |
| TATCTCG | 220 | 0.0 | 41.93046 | 39 |
| GTATGCC | 220 | 0.0 | 41.93046 | 45 |
| CGTACAC | 220 | 0.0 | 41.93046 | 32 |
| GAGACCG | 225 | 0.0 | 40.998672 | 27 |
| AGACCGT | 225 | 0.0 | 40.998672 | 28 |
| CCGAGAC | 235 | 0.0 | 40.211464 | 25 |
| CCGTACA | 230 | 0.0 | 40.1074 | 31 |
| CGAGACC | 245 | 0.0 | 38.57018 | 26 |
| AATGCCG | 245 | 0.0 | 37.65184 | 21 |
| ATGCCGA | 245 | 0.0 | 37.65184 | 22 |
| TGCCGAG | 245 | 0.0 | 37.65184 | 23 |
| GAGCGGT | 250 | 0.0 | 36.904182 | 6 |
| GTACACT | 250 | 0.0 | 36.898808 | 33 |