Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391251.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 700667 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4264 | 0.6085629835570964 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3194 | 0.45585135306786245 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACTGTATCTCGTATGCCGTC | 1603 | 0.2287820034338709 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACTGTATCTCGTATGCC | 1433 | 0.20451940793558138 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 832 | 0.11874399679162856 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCATA | 405 | 0.0 | 43.885963 | 24 |
| GCCGATG | 410 | 0.0 | 43.350773 | 16 |
| GCGGTCT | 540 | 0.0 | 42.913807 | 36 |
| GGCGGTC | 535 | 0.0 | 42.89434 | 35 |
| TAAGCCG | 420 | 0.0 | 42.85429 | 13 |
| CCGATGA | 415 | 0.0 | 42.828472 | 17 |
| TCGGGGA | 550 | 0.0 | 42.54262 | 14 |
| CGGTATT | 550 | 0.0 | 42.54262 | 24 |
| AGCCGAT | 420 | 0.0 | 42.31861 | 15 |
| GACGTCA | 420 | 0.0 | 42.31861 | 22 |
| ACGTCAT | 420 | 0.0 | 42.31861 | 23 |
| CGATGAC | 420 | 0.0 | 42.31861 | 18 |
| GAATTCG | 555 | 0.0 | 42.159355 | 19 |
| TGACGTC | 425 | 0.0 | 41.820744 | 21 |
| AGGCGGT | 550 | 0.0 | 41.724495 | 34 |
| AATTCGG | 565 | 0.0 | 41.41317 | 20 |
| TCGGTAT | 565 | 0.0 | 41.41317 | 23 |
| AAGCCGA | 435 | 0.0 | 41.376556 | 14 |
| ATGACGT | 430 | 0.0 | 41.334457 | 20 |
| TTCGGTA | 580 | 0.0 | 40.34214 | 22 |