FastQCFastQC Report
Mon 6 Jun 2016
ERR1391274.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391274.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences730909
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA43480.5948756958800616No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA28370.3881468144461212No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCCGTC12440.17019902614415747Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCC8390.11478857149111586Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACGTCA4650.043.0586922
ACGTCAT4700.042.6006223
CGTCATA4700.042.6006224
TAAGCCG4750.042.1521913
TCCTCGG2850.041.07798811
GGCGGTC3400.041.0238635
TGACGTC4900.040.86181621
CGATGAC4900.040.86181618
CGGTATT3500.040.49452224
GCCGATG4950.040.44907416
ATGACGT4950.040.44907420
ATTCGGT3450.040.4293121
TTCGGTA3450.040.4293122
AGCCGAT5000.040.0445815
CCGATGA5000.040.0445817
AAGCCGA5000.040.0445814
TCGGGGA3550.039.92417514
TCGGTAT3550.039.92417523
AGGCGGT3500.039.85175334
AATTCGG3500.039.85175320