Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378114.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 500778 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGGCATCTCGTATGCCGTC | 2196 | 0.43851766651090907 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGGCATCTCGTATGCC | 1435 | 0.2865541217865002 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1419 | 0.28335909325090164 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 884 | 0.17652532659182313 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACGTCA | 155 | 0.0 | 43.542877 | 22 |
| TAAGCCG | 155 | 0.0 | 43.542877 | 13 |
| TGCCGTC | 255 | 0.0 | 42.36874 | 45 |
| ATGACGT | 165 | 0.0 | 42.26738 | 20 |
| TGACGTC | 160 | 0.0 | 42.182163 | 21 |
| CGATGAC | 160 | 0.0 | 42.182163 | 18 |
| CGTCATA | 160 | 0.0 | 42.182163 | 24 |
| CCGATGA | 165 | 0.0 | 40.903915 | 17 |
| AGCCGAT | 170 | 0.0 | 39.700863 | 15 |
| GATGACG | 170 | 0.0 | 39.700863 | 19 |
| CGGGGAA | 125 | 0.0 | 39.594994 | 15 |
| GCCGATG | 175 | 0.0 | 38.56655 | 16 |
| AAGCCGA | 175 | 0.0 | 38.56655 | 14 |
| ATGCCGT | 280 | 0.0 | 38.56655 | 44 |
| ACGTCAT | 180 | 0.0 | 37.495255 | 23 |
| TTCGGTA | 140 | 0.0 | 36.95961 | 22 |
| TCGGTAT | 140 | 0.0 | 36.95961 | 23 |
| TCGGGGA | 135 | 0.0 | 36.66203 | 14 |
| TATGCCG | 295 | 0.0 | 36.60554 | 43 |
| AGGCGGT | 145 | 0.0 | 35.685143 | 34 |