Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378312.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1116335 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCAATATCTCGTATGCC | 3731 | 0.33421867091867585 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3246 | 0.2907729310645998 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCAATATCTCGTATGCCGTC | 3097 | 0.2774256831506671 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 430 | 0.0 | 38.718464 | 43 |
| ATGCCGT | 460 | 0.0 | 36.193344 | 44 |
| TGCCGTC | 460 | 0.0 | 36.193344 | 45 |
| ATCGGAA | 420 | 0.0 | 31.06945 | 27 |
| TCGGAAG | 460 | 0.0 | 29.835054 | 28 |
| AGATCGG | 445 | 0.0 | 29.829561 | 25 |
| GATCGGA | 455 | 0.0 | 29.66844 | 26 |
| AATGCCG | 1295 | 0.0 | 23.975306 | 18 |
| ATGCCGA | 1305 | 0.0 | 23.96399 | 19 |
| TGCCGAG | 1305 | 0.0 | 23.791586 | 20 |
| CCGAGAT | 575 | 0.0 | 23.476767 | 22 |
| CGAGATC | 590 | 0.0 | 23.26123 | 23 |
| CTCGTAT | 790 | 0.0 | 21.644192 | 42 |
| GAGATCG | 635 | 0.0 | 21.258486 | 24 |
| CGTATGC | 805 | 0.0 | 21.240883 | 44 |
| TCTCGTA | 815 | 0.0 | 20.980259 | 41 |
| TCGTATG | 820 | 0.0 | 20.85233 | 43 |
| GCCGAGA | 1450 | 0.0 | 20.791779 | 21 |
| CGCTCAA | 830 | 0.0 | 20.601097 | 32 |
| ATCTCGT | 835 | 0.0 | 20.477737 | 37 |