Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378348.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 661632 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3446 | 0.5208333333333333 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACCTTATCTCGTATGCC | 2969 | 0.4487388759914877 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAACCTTATCTCGTATGCCGTC | 2743 | 0.4145809150706133 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 235 | 0.0 | 39.25512 | 43 |
| AGATCGG | 460 | 0.0 | 35.703644 | 25 |
| ATGCCGT | 265 | 0.0 | 34.811146 | 44 |
| TGCCGTC | 265 | 0.0 | 34.811146 | 45 |
| ATCGGAA | 485 | 0.0 | 33.39937 | 27 |
| GATCGGA | 495 | 0.0 | 33.179142 | 26 |
| TCGGAAG | 505 | 0.0 | 32.076622 | 28 |
| GAGATCG | 585 | 0.0 | 28.07466 | 24 |
| CCGAGAT | 615 | 0.0 | 27.436813 | 22 |
| CGAGATC | 610 | 0.0 | 26.924059 | 23 |
| CGTATGC | 580 | 0.0 | 25.60332 | 44 |
| CGAACCT | 580 | 0.0 | 25.601385 | 32 |
| TCTCGTA | 575 | 0.0 | 25.434654 | 41 |
| ACCGAAC | 590 | 0.0 | 25.167461 | 30 |
| CCGAACC | 590 | 0.0 | 25.167461 | 31 |
| CTCGTAT | 590 | 0.0 | 24.78801 | 42 |
| AGACCGA | 600 | 0.0 | 24.748005 | 28 |
| GTATGCC | 605 | 0.0 | 24.545332 | 45 |
| TCGTATG | 605 | 0.0 | 24.545332 | 43 |
| GACCGAA | 620 | 0.0 | 23.94968 | 29 |