Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391317.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1029280 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 4067 | 0.39513057671381935 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAAGTAATCTCGTATGCC | 2935 | 0.2851507850147676 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGTATG | 335 | 0.0 | 39.60218 | 43 |
| CTCGTAT | 350 | 0.0 | 38.5474 | 42 |
| CGTATGC | 340 | 0.0 | 38.36217 | 44 |
| CCGTAAG | 375 | 0.0 | 36.57898 | 31 |
| TCTCGTA | 380 | 0.0 | 34.91245 | 41 |
| ATCTCGT | 410 | 0.0 | 33.454758 | 40 |
| GACCGTA | 405 | 0.0 | 33.31419 | 29 |
| GATCGGA | 555 | 0.0 | 33.22415 | 18 |
| CGTAAGT | 410 | 0.0 | 32.907917 | 32 |
| AGACCGT | 415 | 0.0 | 32.511436 | 28 |
| GTATGCC | 405 | 0.0 | 32.20528 | 45 |
| AATCTCG | 440 | 0.0 | 31.684795 | 39 |
| AGATCGG | 590 | 0.0 | 31.632828 | 17 |
| TCGGAAG | 580 | 0.0 | 31.404367 | 20 |
| ACCGTAA | 430 | 0.0 | 31.37732 | 30 |
| ATCGGAA | 585 | 0.0 | 31.135954 | 19 |
| GAGACCG | 450 | 0.0 | 29.982769 | 27 |
| TATGCCG | 30 | 0.005162715 | 29.981316 | 43 |
| AGCTCGT | 30 | 0.005162715 | 29.981316 | 43 |
| AGTAATC | 510 | 0.0 | 27.337233 | 36 |