Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378456.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 955220 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTATCTATCTCGTATGCC | 3172 | 0.3320700990347773 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTATCTATCTCGTATGCCGTC | 3002 | 0.3142731517346789 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1572 | 0.1645694185632629 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 340 | 0.0 | 36.401676 | 43 |
| TGCCGTC | 365 | 0.0 | 33.908413 | 45 |
| ATGCCGT | 380 | 0.0 | 33.162098 | 44 |
| CGGTATC | 680 | 0.0 | 22.49932 | 32 |
| GAACCGC | 60 | 2.46934E-4 | 22.496964 | 11 |
| CCGGTAT | 685 | 0.0 | 22.335093 | 31 |
| ACCGGTA | 690 | 0.0 | 22.173243 | 30 |
| CTCGTAT | 680 | 0.0 | 22.16961 | 42 |
| GACCGGT | 705 | 0.0 | 22.02061 | 29 |
| AGACCGG | 695 | 0.0 | 22.013723 | 28 |
| TCTCGTA | 685 | 0.0 | 22.007786 | 41 |
| CGTATGC | 690 | 0.0 | 21.850597 | 44 |
| TCGTATG | 690 | 0.0 | 21.850597 | 43 |
| AGATCGG | 330 | 0.0 | 21.815237 | 25 |
| GAGACCG | 710 | 0.0 | 21.546387 | 27 |
| GATCGGA | 335 | 0.0 | 21.489637 | 26 |
| CGGGATT | 170 | 0.0 | 21.173615 | 14 |
| ACGGGAT | 160 | 1.8189894E-12 | 21.090904 | 13 |
| CCTTCGT | 150 | 1.4551915E-11 | 21.01917 | 1 |
| TATCTCG | 740 | 0.0 | 20.977997 | 39 |