FastQCFastQC Report
Mon 6 Jun 2016
ERR1391367.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391367.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1028082
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA250.002111975335.98272341
GATCGGA654.895119E-727.6776718
ATCGGAA709.3489507E-725.70069519
TCGGAAG651.5297986E-524.21796220
AGATCGG751.706625E-623.98498217
ATGCCCG855.0587078E-621.1632212
ATCTCGT707.005375E-419.27645940
CGGTTCA901.873688E-417.48989929
CCGAGAC1053.124752E-517.1346345
CCGGCTA1752.7102942E-916.70382516
AAGAGCG1104.6577843E-516.35498824
GAGCGGT1004.1863945E-415.74014426
CGGGATT1301.112746E-515.56717414
TCGTTGG1351.5273687E-515.0550474
CGGCTAA1951.1355951E-814.99061417
AGCGGTT1056.064828E-414.99061327
CCCGGCT2253.074092E-1014.99061315
CGCCCGG900.003769224314.99061313
AGAGCGG1056.064828E-414.99061325
ACCACGC1859.682117E-814.5854629