Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378170.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 649129 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGAGTATCTCGTATGCC | 1440 | 0.22183572140514443 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 160 | 0.0 | 36.561375 | 42 |
| GACCGCA | 165 | 0.0 | 35.453453 | 29 |
| TCTCGTA | 165 | 0.0 | 35.453453 | 41 |
| AGACCGC | 165 | 0.0 | 35.453453 | 28 |
| GATCGGA | 45 | 8.699499E-7 | 34.996227 | 18 |
| ATCTCGT | 170 | 0.0 | 34.410706 | 40 |
| CCGCAGA | 190 | 0.0 | 34.34105 | 31 |
| TATCTCG | 165 | 0.0 | 34.08986 | 39 |
| TCGTATG | 180 | 0.0 | 33.748962 | 43 |
| CGCAGAG | 190 | 0.0 | 33.156876 | 32 |
| CGTATGC | 190 | 0.0 | 31.9727 | 44 |
| GAGCGGT | 200 | 0.0 | 30.383427 | 6 |
| GCGGTTC | 200 | 0.0 | 30.371725 | 8 |
| GAGACCG | 195 | 0.0 | 29.999075 | 27 |
| CGGTTCA | 205 | 0.0 | 29.630949 | 9 |
| AGCGGTT | 205 | 0.0 | 29.630949 | 7 |
| ACCGCAG | 215 | 0.0 | 29.301422 | 30 |
| CCGAGAC | 205 | 0.0 | 28.535706 | 25 |
| GTATGCC | 235 | 0.0 | 26.807684 | 45 |
| AGATCGG | 60 | 8.191224E-6 | 26.247171 | 17 |