Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378116.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 767929 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGACGGAATCTCGTATGCCGTC | 1969 | 0.25640391234085447 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACGGAATCTCGTATGCC | 1113 | 0.1449352739641295 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1100 | 0.14324240912896896 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 879 | 0.11446370693123974 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 245 | 0.0 | 41.32396 | 44 |
| TATGCCG | 250 | 0.0 | 40.497482 | 43 |
| TGCCGTC | 255 | 0.0 | 39.71634 | 45 |
| TAAGCCG | 120 | 0.0 | 39.372547 | 13 |
| GACGTCA | 125 | 0.0 | 37.79765 | 22 |
| TCGGTAT | 155 | 0.0 | 37.73959 | 23 |
| AATTCGG | 150 | 0.0 | 37.497665 | 20 |
| GGCGGTC | 160 | 0.0 | 36.560226 | 35 |
| TTCGGTA | 155 | 0.0 | 36.288067 | 22 |
| TCTCGAC | 25 | 0.0021073176 | 35.99776 | 20 |
| GCGGTCT | 160 | 0.0 | 35.154064 | 36 |
| AGGCGGT | 160 | 0.0 | 35.154064 | 34 |
| CCGATGA | 135 | 0.0 | 34.99782 | 17 |
| CGTCATA | 135 | 0.0 | 34.99782 | 24 |
| CGGGGAA | 165 | 0.0 | 34.088787 | 15 |
| CGGTATT | 165 | 0.0 | 34.088787 | 24 |
| GAATTCG | 165 | 0.0 | 34.088787 | 19 |
| GCCGATG | 140 | 0.0 | 33.747902 | 16 |
| ATGACGT | 140 | 0.0 | 33.747902 | 20 |
| CGATGAC | 140 | 0.0 | 33.747902 | 18 |