Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378397.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 614928 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACCTATCTCGTATGCC | 1013 | 0.16473473317201365 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 110 | 0.0 | 38.86188 | 42 |
| CGTAACC | 115 | 0.0 | 37.172234 | 32 |
| CCGTAAC | 120 | 0.0 | 35.62339 | 31 |
| TCGTATG | 120 | 0.0 | 35.62339 | 43 |
| AAGAGCG | 130 | 0.0 | 34.6279 | 4 |
| CGTATGC | 125 | 0.0 | 34.198452 | 44 |
| AGACCGT | 135 | 0.0 | 31.665237 | 28 |
| ACCGTAA | 135 | 0.0 | 31.665237 | 30 |
| CCGAGAC | 145 | 0.0 | 31.033081 | 25 |
| GTATGCC | 140 | 0.0 | 30.534336 | 45 |
| TCTCGTA | 140 | 0.0 | 30.534336 | 41 |
| GTCGAAT | 30 | 0.0051465556 | 29.998644 | 18 |
| TATCTCG | 150 | 0.0 | 29.998644 | 39 |
| GAGACCG | 145 | 0.0 | 29.481426 | 27 |
| GCGGTTC | 155 | 0.0 | 29.030947 | 8 |
| GACCGTA | 150 | 0.0 | 28.498713 | 29 |
| GTAACCT | 155 | 0.0 | 27.5794 | 33 |
| CGGTTCA | 170 | 0.0 | 26.46939 | 9 |
| AGCGGTT | 170 | 0.0 | 26.46939 | 7 |
| ATCTCGT | 165 | 0.0 | 25.90792 | 40 |