Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378471.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1016225 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGAGATCTCGTATGCCGTC | 6265 | 0.6164973308076459 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGAGATCTCGTATGCC | 3471 | 0.3415582179143398 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2934 | 0.28871558955939874 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1554 | 0.15291889099362838 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 760 | 0.0 | 39.68863 | 43 |
| ATGCCGT | 770 | 0.0 | 39.17319 | 44 |
| TGCCGTC | 770 | 0.0 | 39.17319 | 45 |
| GTACGTG | 30 | 0.0051506967 | 29.995573 | 23 |
| CGTATGC | 1165 | 0.0 | 26.07553 | 41 |
| CTCGTAT | 1170 | 0.0 | 25.767963 | 39 |
| TCGTATG | 1175 | 0.0 | 25.658312 | 40 |
| TCTCGTA | 1180 | 0.0 | 25.356426 | 38 |
| ACCGATC | 1195 | 0.0 | 25.040607 | 27 |
| GACCGAT | 1200 | 0.0 | 24.933819 | 26 |
| GTATGCC | 1210 | 0.0 | 24.922262 | 42 |
| AGACCGA | 1210 | 0.0 | 24.91368 | 25 |
| GAGACCG | 1215 | 0.0 | 24.811153 | 24 |
| ATCTCGT | 1180 | 0.0 | 24.784477 | 37 |
| CCGATCG | 1220 | 0.0 | 24.711899 | 28 |
| CGATCGA | 1240 | 0.0 | 24.313318 | 29 |
| TCGAGAT | 1255 | 0.0 | 23.843447 | 32 |
| ATCGAGA | 1295 | 0.0 | 23.280706 | 31 |
| AATGCCG | 1895 | 0.0 | 23.030901 | 18 |
| ATGCCGA | 1915 | 0.0 | 22.672894 | 19 |