FastQCFastQC Report
Mon 6 Jun 2016
ERR1391290.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391290.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527946
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA47010.8904319759975452No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA31490.5964625169998448No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCCGTC21140.400419739897641Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCC14720.27881639410091186Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT10010.18960272452106844Illumina Paired End PCR Primer 2 (96% over 30bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA6430.12179275910793906No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGGTC4000.044.43123235
GCGGTCT4100.043.89624836
AGCCGAT4550.043.51034515
GACGTCA4550.043.0159122
GCCGATG4550.043.0159116
ACGTCAT4550.043.0159123
CGGTATT4250.042.87630524
CCGATGA4600.042.54834717
GAATTCG4350.042.40781419
AATTCGG4300.042.37774320
AGGCGGT4250.042.3469734
ATGACGT4650.042.09083620
TAAGCCG4650.042.09083613
CGTCATA4650.042.09083624
TCCTCGG3600.041.89687311
ATTCGGT4350.041.89064421
TTCGGTA4350.041.89064422
TCGGTAT4350.041.89064423
CCTCGGG3600.041.86909512
CGGTCTC4300.041.8545637