Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378457.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 765627 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTCTATCTCGTATGCC | 2703 | 0.3530439757218593 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTCTATCTCGTATGCCGTC | 2479 | 0.323786909291339 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1244 | 0.16248120821235407 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 260 | 0.0 | 38.94926 | 43 |
| ATGCCGT | 275 | 0.0 | 36.82476 | 44 |
| TGCCGTC | 295 | 0.0 | 34.328163 | 45 |
| CGGAAGA | 625 | 0.0 | 23.787554 | 1 |
| CGTAGTC | 610 | 0.0 | 23.235783 | 32 |
| CTCGTAT | 610 | 0.0 | 22.86995 | 42 |
| CCGTAGT | 625 | 0.0 | 22.678125 | 31 |
| ACCGTAG | 625 | 0.0 | 22.678125 | 30 |
| TCGTATG | 620 | 0.0 | 22.504019 | 43 |
| GTATGCC | 640 | 0.0 | 22.504017 | 45 |
| TCTCGTA | 620 | 0.0 | 22.501078 | 41 |
| GACCGTA | 625 | 0.0 | 22.318153 | 29 |
| CGTATGC | 630 | 0.0 | 22.146812 | 44 |
| TATCTCG | 635 | 0.0 | 21.966686 | 39 |
| GAGACCG | 640 | 0.0 | 21.79507 | 27 |
| ATCTCGT | 645 | 0.0 | 21.626118 | 40 |
| AGACCGT | 655 | 0.0 | 21.295948 | 28 |
| ACGCCCG | 65 | 4.2406854E-4 | 20.766155 | 12 |
| GTCTATC | 710 | 0.0 | 19.961834 | 36 |
| CGAGACC | 725 | 0.0 | 19.859129 | 26 |