Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391197.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1024577 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1706 | 0.16650773929143442 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1251 | 0.12209916873011985 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1176 | 0.11477907468155152 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGACGTC | 220 | 0.0 | 40.908558 | 21 |
| TAAGCCG | 235 | 0.0 | 39.25481 | 13 |
| ATGACGT | 230 | 0.0 | 39.129925 | 20 |
| CGATGAC | 235 | 0.0 | 38.297375 | 18 |
| GGCGGTC | 200 | 0.0 | 38.2495 | 35 |
| ACGTCAT | 240 | 0.0 | 37.49951 | 23 |
| CGTCATA | 240 | 0.0 | 37.49951 | 24 |
| GCGGTCT | 205 | 0.0 | 37.316586 | 36 |
| GATGACG | 245 | 0.0 | 36.734215 | 19 |
| TATGCCG | 135 | 0.0 | 36.666187 | 43 |
| TCGGTAT | 210 | 0.0 | 36.428097 | 23 |
| TTCGGTA | 220 | 0.0 | 35.794987 | 22 |
| CGGTATT | 215 | 0.0 | 35.580933 | 24 |
| AGCCGAT | 260 | 0.0 | 35.480305 | 15 |
| AATTCGG | 220 | 0.0 | 34.772274 | 20 |
| CGGTCTC | 220 | 0.0 | 34.772274 | 37 |
| GACGTCA | 260 | 0.0 | 34.614933 | 22 |
| AAGCCGA | 270 | 0.0 | 34.16622 | 14 |
| CCGATGA | 265 | 0.0 | 33.961826 | 17 |
| TCGGGGA | 230 | 0.0 | 33.260437 | 14 |