FastQCFastQC Report
Mon 6 Jun 2016
ERR1391280.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391280.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences683401
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA48910.7156852272677389No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA32290.47248979735177443No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAGAATCTCGTATGCCGTC23760.3476728889773354Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAGAATCTCGTATGCC17840.2610473206799522Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT11150.1631545754249701Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGGGA3450.043.03983714
CTCGGGG3150.042.13929413
GCCGATG5350.042.0525216
TAAGCCG5350.042.0525213
GACGTCA5400.041.66314322
TATGCCG2450.041.3230443
AGCCGAT5450.041.28091415
CCGATGA5450.041.28091417
TGACGTC5450.041.28091421
CGTCATA5500.040.90563224
GGCGGTC3700.040.739835
TTCGGTA3700.040.739822
CGGTATT3700.040.739824
ACGTCAT5550.040.53711723
TTCCTCG3300.040.23564510
GCGGTCT3750.040.196636
AGGCGGT3750.040.196634
CGATGAC5650.039.8196418
ATGCCGT2600.039.8043344
AATTCGG3800.039.66769420