Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391295.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 903769 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 5185 | 0.5737085472061998 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3612 | 0.3996596475426796 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGATGATCTCGTATGCCGTC | 1918 | 0.21222237098196553 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGATGATCTCGTATGCC | 1779 | 0.1968423347116354 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGACGTC | 660 | 0.0 | 42.26909 | 21 |
| GATGACG | 660 | 0.0 | 42.26909 | 19 |
| CGATGAC | 660 | 0.0 | 42.26909 | 18 |
| TAAGCCG | 655 | 0.0 | 42.245934 | 13 |
| GACGTCA | 665 | 0.0 | 41.951275 | 22 |
| GGCGGTC | 435 | 0.0 | 41.89063 | 35 |
| CCGATGA | 670 | 0.0 | 41.638206 | 17 |
| CGTCATA | 670 | 0.0 | 41.635906 | 24 |
| GCCGATG | 670 | 0.0 | 41.302418 | 16 |
| AGCCGAT | 670 | 0.0 | 41.300133 | 15 |
| TTCGGTA | 445 | 0.0 | 40.95153 | 22 |
| ACGTCAT | 685 | 0.0 | 40.724167 | 23 |
| AAGCCGA | 680 | 0.0 | 40.692776 | 14 |
| AGGCGGT | 450 | 0.0 | 40.494274 | 34 |
| ATGACGT | 690 | 0.0 | 40.431305 | 20 |
| GCGGTCT | 455 | 0.0 | 40.049282 | 36 |
| CGGTCTC | 455 | 0.0 | 40.049282 | 37 |
| CGGTATT | 450 | 0.0 | 39.994347 | 24 |
| ATTCGGT | 460 | 0.0 | 39.616158 | 21 |
| TCGGTAT | 455 | 0.0 | 39.554848 | 23 |