Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378453.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 435334 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATCAATCTCGTATGCCGTC | 2305 | 0.5294785153468371 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATCAATCTCGTATGCC | 2012 | 0.4621738710966752 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1302 | 0.2990807058488425 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 479 | 0.11003045937142517 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 255 | 0.0 | 38.828686 | 43 |
| ATGCCGT | 275 | 0.0 | 36.00478 | 44 |
| TGCCGTC | 280 | 0.0 | 35.36184 | 45 |
| ATCGGAA | 240 | 0.0 | 29.063019 | 27 |
| TCGGAAG | 250 | 0.0 | 28.800514 | 28 |
| AGATCGG | 250 | 0.0 | 27.897293 | 25 |
| GATCGGA | 255 | 0.0 | 27.350286 | 26 |
| AATGCCG | 695 | 0.0 | 24.27822 | 18 |
| CCGAGAT | 300 | 0.0 | 23.997673 | 22 |
| GAATGCC | 720 | 0.0 | 23.747696 | 17 |
| CTCGTAT | 420 | 0.0 | 23.571848 | 39 |
| CGTATGC | 425 | 0.0 | 23.294535 | 41 |
| GACCGTC | 425 | 0.0 | 23.291859 | 26 |
| GTATGCC | 430 | 0.0 | 23.026312 | 42 |
| TCTCGTA | 430 | 0.0 | 23.021023 | 38 |
| TGCCGAG | 740 | 0.0 | 22.801842 | 20 |
| TCGTATG | 435 | 0.0 | 22.759027 | 40 |
| GAGACCG | 440 | 0.0 | 22.497818 | 24 |
| AGACCGT | 440 | 0.0 | 22.497818 | 25 |
| GCCGAGA | 745 | 0.0 | 22.044842 | 21 |