Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378143.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 915413 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTATCTATCTCGTATGCC | 1200 | 0.1310883721336708 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 180 | 0.0 | 38.74774 | 41 |
| CGTATGC | 185 | 0.0 | 37.70051 | 44 |
| TATCTCG | 185 | 0.0 | 37.70051 | 39 |
| CCGGTAT | 185 | 0.0 | 37.70051 | 31 |
| CTCGTAT | 190 | 0.0 | 36.70839 | 42 |
| GACCGGT | 195 | 0.0 | 35.767147 | 29 |
| CGGTATC | 195 | 0.0 | 35.767147 | 32 |
| AGACCGG | 200 | 0.0 | 34.872967 | 28 |
| TCGTATG | 205 | 0.0 | 34.022408 | 43 |
| ATCTCGT | 220 | 0.0 | 31.702698 | 40 |
| ACCGGTA | 220 | 0.0 | 31.702698 | 30 |
| GATCGGA | 95 | 0.0 | 30.78768 | 18 |
| AGACGAT | 30 | 0.0051481836 | 29.998251 | 36 |
| GTATGCC | 235 | 0.0 | 28.72173 | 45 |
| GAGACCG | 245 | 0.0 | 28.46773 | 27 |
| AGAGCGG | 265 | 0.0 | 28.026423 | 5 |
| ATCGGAA | 115 | 0.0 | 27.38971 | 19 |
| GCGGTTC | 275 | 0.0 | 26.998428 | 8 |
| AGATCGG | 110 | 5.456968E-12 | 26.58936 | 17 |
| AAGAGCG | 300 | 0.0 | 26.257074 | 4 |