Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391308.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 641982 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2469 | 0.3845902221557614 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1762 | 0.27446252387138576 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATTGAAATCTCGTATGCCGTC | 1575 | 0.24533398132657924 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTGAAATCTCGTATGCC | 1456 | 0.22679763607079328 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 798 | 0.12430255053880014 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGGTAT | 210 | 0.0 | 44.99922 | 23 |
| ATTCGGT | 215 | 0.0 | 43.952724 | 21 |
| TTCGGTA | 215 | 0.0 | 43.952724 | 22 |
| TAAGCCG | 295 | 0.0 | 41.94516 | 13 |
| GGCGGTC | 220 | 0.0 | 41.93109 | 35 |
| AGCCGAT | 305 | 0.0 | 41.307545 | 15 |
| CCGATGA | 305 | 0.0 | 41.307545 | 17 |
| GCCGATG | 305 | 0.0 | 41.307545 | 16 |
| AAGCCGA | 305 | 0.0 | 41.307545 | 14 |
| GAATTCG | 230 | 0.0 | 41.083046 | 19 |
| CGATGAC | 310 | 0.0 | 40.641293 | 18 |
| GATGACG | 305 | 0.0 | 40.569912 | 19 |
| TGCCGTC | 195 | 0.0 | 40.39021 | 45 |
| TATGCCG | 190 | 0.0 | 40.259327 | 43 |
| CGGTATT | 235 | 0.0 | 40.212074 | 24 |
| AATTCGG | 235 | 0.0 | 40.20894 | 20 |
| GCGGTCT | 230 | 0.0 | 40.108 | 36 |
| AGGCGGT | 230 | 0.0 | 40.108 | 34 |
| GACGTCA | 305 | 0.0 | 39.835377 | 22 |
| TGACGTC | 305 | 0.0 | 39.835377 | 21 |