Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378242.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1022141 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4539 | 0.4440678927858289 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCC | 4084 | 0.3995534862607018 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCCGTC | 3193 | 0.31238351655984836 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 480 | 0.0 | 37.497597 | 44 |
| TATGCCG | 470 | 0.0 | 37.33803 | 43 |
| TGCCGTC | 490 | 0.0 | 36.732338 | 45 |
| GATCGGA | 730 | 0.0 | 35.751133 | 26 |
| AGATCGG | 750 | 0.0 | 35.097748 | 25 |
| ATCGGAA | 750 | 0.0 | 34.797768 | 27 |
| CGAGATC | 830 | 0.0 | 31.443766 | 23 |
| TCGGAAG | 850 | 0.0 | 30.968601 | 28 |
| CCGAGAT | 860 | 0.0 | 30.346891 | 22 |
| GAGATCG | 860 | 0.0 | 30.08528 | 24 |
| AATGCCG | 1765 | 0.0 | 25.111704 | 18 |
| TGCCGAG | 1790 | 0.0 | 24.760983 | 20 |
| ATGCCGA | 1805 | 0.0 | 24.555212 | 19 |
| GCCGAGA | 1875 | 0.0 | 23.638483 | 21 |
| GAATGCC | 1940 | 0.0 | 22.846474 | 17 |
| GGAATGC | 2120 | 0.0 | 21.012802 | 16 |
| CGAATAC | 955 | 0.0 | 20.26048 | 32 |
| CTCGTAT | 975 | 0.0 | 20.075636 | 42 |
| GACCGAA | 960 | 0.0 | 19.920599 | 29 |
| GTATGCC | 975 | 0.0 | 19.844883 | 45 |