Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378131.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1016392 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATGAATCTCGTATGCC | 1616 | 0.1589937740556793 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACCGATA | 200 | 0.0 | 40.4961 | 30 |
| GACCGAT | 200 | 0.0 | 39.371212 | 29 |
| CGTATGC | 215 | 0.0 | 38.71911 | 44 |
| CGATATG | 215 | 0.0 | 38.71911 | 32 |
| CCGATAT | 210 | 0.0 | 38.569614 | 31 |
| TCGTATG | 225 | 0.0 | 36.99644 | 43 |
| CGGTTCA | 235 | 0.0 | 36.37948 | 9 |
| TCTCGTA | 230 | 0.0 | 36.19395 | 41 |
| AATCTCG | 230 | 0.0 | 36.19395 | 39 |
| GAGACCG | 225 | 0.0 | 34.99663 | 27 |
| AGACCGA | 230 | 0.0 | 34.23584 | 28 |
| GCGGTTC | 250 | 0.0 | 34.196712 | 8 |
| GAGCGGT | 255 | 0.0 | 33.54434 | 6 |
| AGAGCGG | 255 | 0.0 | 33.54434 | 5 |
| CTCGTAT | 250 | 0.0 | 33.298435 | 42 |
| AGCGGTT | 260 | 0.0 | 32.88145 | 7 |
| ATCTCGT | 255 | 0.0 | 32.645523 | 40 |
| CCGAGAC | 250 | 0.0 | 32.396885 | 25 |
| AAGAGCG | 285 | 0.0 | 31.593006 | 4 |
| CGGAAGA | 285 | 0.0 | 30.025177 | 1 |