Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378580.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 430469 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGTGATCTCGTATGCC | 1410 | 0.3275497190273864 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACCGGAT | 155 | 0.0 | 40.643692 | 30 |
| CGGATGT | 155 | 0.0 | 40.643692 | 32 |
| CGTATGC | 160 | 0.0 | 39.373577 | 44 |
| TCTCGTA | 160 | 0.0 | 39.373577 | 41 |
| AGACCGG | 160 | 0.0 | 39.373577 | 28 |
| CCGAGAC | 170 | 0.0 | 38.380966 | 25 |
| GCGGTTC | 165 | 0.0 | 38.184875 | 8 |
| CGGTTCA | 165 | 0.0 | 38.18044 | 9 |
| CCGGATG | 165 | 0.0 | 38.18044 | 31 |
| AAGAGCG | 175 | 0.0 | 37.29303 | 4 |
| GACCGGA | 170 | 0.0 | 37.057484 | 29 |
| TCGTATG | 170 | 0.0 | 37.057484 | 43 |
| GAGCGGT | 180 | 0.0 | 36.25711 | 6 |
| AGAGCGG | 180 | 0.0 | 36.25711 | 5 |
| AGCGGTT | 180 | 0.0 | 36.2529 | 7 |
| AATGCCG | 180 | 0.0 | 36.248688 | 21 |
| GTATGCC | 175 | 0.0 | 35.998695 | 45 |
| GAGACCG | 185 | 0.0 | 35.268993 | 27 |
| ATGCCGA | 185 | 0.0 | 35.268993 | 22 |
| ATCTCGT | 180 | 0.0 | 34.998734 | 40 |