FastQCFastQC Report
Mon 6 Jun 2016
ERR1391265.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391265.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences622011
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA56430.9072186826277991No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA37000.5948447857031467No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGAGATCTCGTATGCCGTC9140.14694273895477733Illumina Paired End PCR Primer 2 (96% over 33bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGAGATCTCGTATGCC8070.12974047082768633Illumina Paired End PCR Primer 2 (97% over 36bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA7300.11736126853062083No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC1100.045.00080545
CCGATGA5050.043.65712717
CGATGAC5050.043.65712718
GCCGATG5000.043.19382516
TGACGTC5200.042.83041821
AGCCGAT5050.042.76616315
GGCGGTC4400.042.43711535
TAAGCCG5100.042.3468913
GACGTCA5300.042.02229722
GATGACG5300.042.02229719
CGTCATA5300.042.02229724
TCGGTAT4450.041.96029323
AAGCCGA5150.041.93575314
ACGTCAT5350.041.62956623
GCGGTCT4500.041.4940736
CGGTATT4500.041.4940724
TATGCCG1200.041.24410243
ATGCCGT1200.041.24410244
AATTCGG4550.041.0380920
TTCGGTA4550.041.0380922