Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378221.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 918068 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4053 | 0.44147056645041544 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTCTATCTCGTATGCCGTC | 2467 | 0.2687164785179311 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTCTATCTCGTATGCC | 1599 | 0.17417010504668498 | Illumina Paired End PCR Primer 2 (97% over 38bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 325 | 0.0 | 37.3833 | 43 |
| GATCGGA | 555 | 0.0 | 36.079815 | 26 |
| ATGCCGT | 335 | 0.0 | 35.595768 | 44 |
| TGCCGTC | 345 | 0.0 | 34.564007 | 45 |
| ATCGGAA | 580 | 0.0 | 34.136734 | 27 |
| AGATCGG | 595 | 0.0 | 34.03242 | 25 |
| TCGGAAG | 645 | 0.0 | 32.091896 | 28 |
| CGAGATC | 675 | 0.0 | 29.665627 | 23 |
| ATGCCGA | 1105 | 0.0 | 29.523848 | 19 |
| AATGCCG | 1110 | 0.0 | 29.39086 | 18 |
| CCGAGAT | 690 | 0.0 | 29.346798 | 22 |
| GAGATCG | 685 | 0.0 | 29.23255 | 24 |
| TGCCGAG | 1165 | 0.0 | 28.00331 | 20 |
| GCCGAGA | 1195 | 0.0 | 26.735464 | 21 |
| GACCGCT | 490 | 0.0 | 25.254215 | 26 |
| GTCGGAA | 45 | 0.0012266177 | 24.999123 | 27 |
| GAATGCC | 1315 | 0.0 | 24.63792 | 17 |
| CGGAAGA | 835 | 0.0 | 24.520096 | 29 |
| CTCGTAT | 505 | 0.0 | 24.058561 | 39 |
| AGACCGC | 505 | 0.0 | 24.058561 | 25 |