Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391311.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 733887 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4079 | 0.5558076379606125 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2571 | 0.3503264126493588 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATTAGATCTCGTATGCCGTC | 1546 | 0.21065913417188203 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATTAGATCTCGTATGCC | 1408 | 0.19185514936223153 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 799 | 0.10887234683268678 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGGTAT | 380 | 0.0 | 43.21714 | 23 |
| TTCGGTA | 385 | 0.0 | 42.65588 | 22 |
| GCGGTCT | 390 | 0.0 | 42.10901 | 36 |
| GGCGGTC | 390 | 0.0 | 42.10901 | 35 |
| GAATTCG | 390 | 0.0 | 42.10901 | 19 |
| AATTCGG | 395 | 0.0 | 41.575985 | 20 |
| TAAGCCG | 395 | 0.0 | 41.575985 | 13 |
| CGATGAC | 405 | 0.0 | 41.10489 | 18 |
| AGCCGAT | 400 | 0.0 | 41.056282 | 15 |
| CGGTCTC | 410 | 0.0 | 40.60361 | 37 |
| ATTCGGT | 405 | 0.0 | 40.54942 | 21 |
| AGGCGGT | 405 | 0.0 | 40.54942 | 34 |
| GATGACG | 405 | 0.0 | 40.54942 | 19 |
| CGGGGAA | 400 | 0.0 | 40.49387 | 15 |
| GACGTCA | 410 | 0.0 | 40.054913 | 22 |
| CGTCATA | 410 | 0.0 | 40.054913 | 24 |
| CGGTATT | 420 | 0.0 | 39.636856 | 24 |
| GCCGATG | 415 | 0.0 | 39.572323 | 16 |
| ACGTCAT | 415 | 0.0 | 39.572323 | 23 |
| TGACGTC | 420 | 0.0 | 39.101223 | 21 |