Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378185.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1057016 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCC | 1570 | 0.1485313372739864 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 190 | 0.0 | 39.075825 | 44 |
| TCTCGTA | 195 | 0.0 | 38.07388 | 41 |
| GCGGTTC | 205 | 0.0 | 37.31409 | 8 |
| CCGAGAC | 205 | 0.0 | 37.31409 | 25 |
| GACCGAG | 210 | 0.0 | 35.354317 | 29 |
| CTCGTAT | 215 | 0.0 | 34.532127 | 42 |
| AGACCGA | 215 | 0.0 | 34.532127 | 28 |
| ATGCCGA | 230 | 0.0 | 34.236393 | 22 |
| AAGAGCG | 225 | 0.0 | 34.013374 | 4 |
| AGCGGTT | 225 | 0.0 | 33.997284 | 7 |
| TCGTATG | 220 | 0.0 | 33.747307 | 43 |
| GAGCGGT | 235 | 0.0 | 33.52382 | 6 |
| AGAGCGG | 230 | 0.0 | 33.273952 | 5 |
| TGCCGAG | 225 | 0.0 | 32.997364 | 23 |
| ACCGAGT | 230 | 0.0 | 32.28003 | 30 |
| GAGACCG | 230 | 0.0 | 32.28003 | 27 |
| ATCTCGT | 235 | 0.0 | 31.59322 | 40 |
| CGGAAGA | 250 | 0.0 | 30.626532 | 1 |
| AATGCCG | 255 | 0.0 | 29.997602 | 21 |
| CGAGTGT | 250 | 0.0 | 29.697628 | 32 |