Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378353.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 772058 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5818 | 0.7535703276178733 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTCTAATCTCGTATGCCGTC | 4912 | 0.6362216310173587 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTCTAATCTCGTATGCC | 4641 | 0.6011206411953506 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1000 | 0.12952394768268705 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 605 | 0.0 | 39.789837 | 45 |
| TATGCCG | 630 | 0.0 | 38.210876 | 43 |
| ATGCCGT | 650 | 0.0 | 37.035156 | 44 |
| ATCGGAA | 735 | 0.0 | 35.20094 | 27 |
| GATCGGA | 740 | 0.0 | 34.963097 | 26 |
| AGATCGG | 755 | 0.0 | 33.970478 | 25 |
| TCGGAAG | 790 | 0.0 | 33.88938 | 28 |
| CGAGATC | 815 | 0.0 | 31.469584 | 23 |
| CCGAGAT | 830 | 0.0 | 30.900858 | 22 |
| GAGATCG | 885 | 0.0 | 28.980463 | 24 |
| AATGCCG | 1870 | 0.0 | 27.310398 | 18 |
| ATGCCGA | 1890 | 0.0 | 27.140434 | 19 |
| TGCCGAG | 1890 | 0.0 | 26.902359 | 20 |
| GAATGCC | 1990 | 0.0 | 25.550484 | 17 |
| GCCGAGA | 1955 | 0.0 | 25.432514 | 21 |
| GGAATGC | 2070 | 0.0 | 24.563026 | 16 |
| CTCGTAT | 1005 | 0.0 | 23.953087 | 39 |
| ACCGGTT | 1010 | 0.0 | 23.834505 | 27 |
| CGTATGC | 1010 | 0.0 | 23.834505 | 41 |
| CGGTTCT | 1010 | 0.0 | 23.834505 | 29 |