Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378539.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 363853 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATCTGATCTCGTATGCC | 2313 | 0.6356962839388435 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATCTCGT | 260 | 0.0 | 44.132862 | 40 |
| CTCGTAT | 260 | 0.0 | 44.132862 | 42 |
| TCTCGTA | 265 | 0.0 | 43.300163 | 41 |
| TCGTATG | 265 | 0.0 | 43.300163 | 43 |
| GACCGTA | 260 | 0.0 | 43.26751 | 29 |
| GAGACCG | 260 | 0.0 | 43.26751 | 27 |
| CGTATGC | 270 | 0.0 | 42.504154 | 44 |
| CCGTATC | 270 | 0.0 | 42.498314 | 31 |
| AGACCGT | 265 | 0.0 | 42.45114 | 28 |
| CGTATCT | 280 | 0.0 | 40.980515 | 32 |
| AGCGGTT | 295 | 0.0 | 39.659443 | 7 |
| ACCGTAT | 290 | 0.0 | 39.567394 | 30 |
| GAGCGGT | 300 | 0.0 | 39.003815 | 6 |
| GTATGCC | 295 | 0.0 | 38.902107 | 45 |
| CGAGACC | 290 | 0.0 | 38.79156 | 26 |
| GCGGTTC | 305 | 0.0 | 38.35913 | 8 |
| GATCTCG | 300 | 0.0 | 38.248486 | 39 |
| AGAGCGG | 310 | 0.0 | 37.750813 | 5 |
| CGGTTCA | 315 | 0.0 | 37.141384 | 9 |
| CCGAGAC | 305 | 0.0 | 36.88378 | 25 |