Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378338.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 978817 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACCATTATCTCGTATGCC | 2887 | 0.2949478809624271 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2721 | 0.2779886332174451 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACCATTATCTCGTATGCCGTC | 2293 | 0.2342623799954435 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 280 | 0.0 | 35.352768 | 45 |
| ATGCCGT | 295 | 0.0 | 33.555172 | 44 |
| GATCGGA | 445 | 0.0 | 33.366657 | 26 |
| AGATCGG | 450 | 0.0 | 32.99592 | 25 |
| ATCGGAA | 465 | 0.0 | 31.447721 | 27 |
| TATGCCG | 315 | 0.0 | 30.710487 | 43 |
| CGCAATT | 30 | 0.0051500043 | 29.996288 | 35 |
| TCGGAAG | 490 | 0.0 | 29.843246 | 28 |
| GAGATCG | 515 | 0.0 | 28.831383 | 24 |
| CCGAGAT | 525 | 0.0 | 28.710732 | 22 |
| CGAGATC | 535 | 0.0 | 27.753574 | 23 |
| AATGCCG | 1040 | 0.0 | 23.795134 | 18 |
| ATGCCGA | 1040 | 0.0 | 23.795134 | 19 |
| TGCCGAG | 1090 | 0.0 | 22.703611 | 20 |
| GACCGAC | 580 | 0.0 | 22.497215 | 29 |
| ACCGACC | 590 | 0.0 | 22.115908 | 30 |
| AGACCGA | 590 | 0.0 | 22.115908 | 28 |
| GCCGAGA | 1125 | 0.0 | 21.997276 | 21 |
| CCGACCA | 595 | 0.0 | 21.93006 | 31 |
| ATCTCGT | 600 | 0.0 | 21.747309 | 40 |