Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378122.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 717968 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1598 | 0.22257259376462463 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTACGATCTCGTATGCCGTC | 1452 | 0.20223742562342611 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTACGATCTCGTATGCC | 1389 | 0.19346266128852538 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1123 | 0.15641365631894458 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACGTCAT | 180 | 0.0 | 42.496643 | 23 |
| ATGACGT | 185 | 0.0 | 41.348087 | 20 |
| TAAGCCG | 185 | 0.0 | 41.34521 | 13 |
| TGACGTC | 195 | 0.0 | 39.227673 | 21 |
| CGATGAC | 195 | 0.0 | 39.227673 | 18 |
| GGCGGTC | 170 | 0.0 | 38.379326 | 35 |
| AATTCGG | 170 | 0.0 | 38.379326 | 20 |
| TCGGTAT | 170 | 0.0 | 38.379326 | 23 |
| CCGATGA | 200 | 0.0 | 38.24698 | 17 |
| GATGACG | 200 | 0.0 | 38.24698 | 19 |
| CGTCATA | 200 | 0.0 | 38.24698 | 24 |
| AGCCGAT | 200 | 0.0 | 38.244316 | 15 |
| GCCGATG | 205 | 0.0 | 37.31413 | 16 |
| GACGTCA | 210 | 0.0 | 36.425697 | 22 |
| AAGCCGA | 215 | 0.0 | 35.57611 | 14 |
| GAATTCG | 190 | 0.0 | 35.523514 | 19 |
| ATGCCGT | 165 | 0.0 | 35.449276 | 44 |
| GCGGTCT | 185 | 0.0 | 35.267487 | 36 |
| ATTCGGT | 185 | 0.0 | 35.267487 | 21 |
| TTCGGTA | 185 | 0.0 | 35.267487 | 22 |