Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378458.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1102437 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTAGTATCTCGTATGCC | 2101 | 0.19057778358309818 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTAGTATCTCGTATGCCGTC | 2040 | 0.18504458758187545 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1248 | 0.11320374769714732 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 245 | 0.0 | 36.735954 | 43 |
| ATGCCGT | 285 | 0.0 | 31.58003 | 44 |
| TGCCGTC | 285 | 0.0 | 31.58003 | 45 |
| AGATCGG | 280 | 0.0 | 23.3012 | 25 |
| GATCGGA | 295 | 0.0 | 22.116392 | 26 |
| ATCGGAA | 305 | 0.0 | 21.391264 | 27 |
| CGTCTAG | 430 | 0.0 | 20.928102 | 29 |
| CGTATGC | 450 | 0.0 | 20.497913 | 41 |
| TATCTCG | 450 | 0.0 | 20.497913 | 36 |
| CTCGTAT | 445 | 0.0 | 20.22266 | 39 |
| CCGTCTA | 450 | 0.0 | 19.997965 | 28 |
| TCGGAAG | 340 | 0.0 | 19.85092 | 28 |
| TCTCGTA | 465 | 0.0 | 19.352867 | 38 |
| AGACCGT | 465 | 0.0 | 19.352867 | 25 |
| TCGTATG | 470 | 0.0 | 19.146986 | 40 |
| AATGCCG | 840 | 0.0 | 19.01592 | 18 |
| TGCCGAG | 840 | 0.0 | 19.01592 | 20 |
| ATCTCGT | 475 | 0.0 | 18.94544 | 37 |
| GACCGTC | 475 | 0.0 | 18.94544 | 26 |
| ACCGTCT | 480 | 0.0 | 18.74809 | 27 |