Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378360.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 869750 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAATTCATCTCGTATGCC | 2922 | 0.33595860879563094 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2352 | 0.2704225352112676 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAATTCATCTCGTATGCCGTC | 2287 | 0.2629491233112964 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 285 | 0.0 | 38.68159 | 45 |
| TATGCCG | 295 | 0.0 | 38.13301 | 43 |
| ATGCCGT | 310 | 0.0 | 35.56211 | 44 |
| GATCGGA | 385 | 0.0 | 33.89381 | 26 |
| ATCGGAA | 375 | 0.0 | 33.597725 | 27 |
| AGATCGG | 410 | 0.0 | 31.827112 | 25 |
| TCGGAAG | 460 | 0.0 | 27.38945 | 28 |
| CCGAGAT | 490 | 0.0 | 26.630848 | 22 |
| CGAGATC | 500 | 0.0 | 26.098232 | 23 |
| CCTTCGT | 85 | 1.8822539E-7 | 23.83699 | 1 |
| GAGATCG | 565 | 0.0 | 23.493984 | 24 |
| CCGCAAT | 680 | 0.0 | 23.491056 | 31 |
| CGCAATT | 690 | 0.0 | 23.476671 | 32 |
| CTCGTAT | 690 | 0.0 | 23.150606 | 42 |
| GTATGCC | 700 | 0.0 | 22.819883 | 45 |
| TCTCGTA | 700 | 0.0 | 22.819883 | 41 |
| GAGACCG | 710 | 0.0 | 22.815357 | 27 |
| ATCTCGT | 710 | 0.0 | 22.498478 | 40 |
| CATCTCG | 710 | 0.0 | 22.498478 | 39 |
| AGACCGC | 710 | 0.0 | 22.498478 | 28 |