Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378175.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 880648 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATCGAATCTCGTATGCC | 1241 | 0.1409189596751483 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 160 | 0.0 | 39.37207 | 44 |
| GATCGAA | 160 | 0.0 | 39.37207 | 34 |
| TCGAATC | 160 | 0.0 | 39.37207 | 36 |
| ACCGGAT | 155 | 0.0 | 39.19063 | 30 |
| CGGATCG | 165 | 0.0 | 38.178974 | 32 |
| CGAATCT | 175 | 0.0 | 37.28294 | 37 |
| CTCGTAT | 170 | 0.0 | 37.056065 | 42 |
| GACCGGA | 165 | 0.0 | 36.81544 | 29 |
| GGATCGA | 175 | 0.0 | 35.997322 | 33 |
| TCGTATG | 175 | 0.0 | 35.997322 | 43 |
| CCGGATC | 170 | 0.0 | 35.73263 | 31 |
| ATCTCGT | 180 | 0.0 | 34.997395 | 40 |
| GCGGTTC | 190 | 0.0 | 34.339546 | 8 |
| CGGTTCA | 195 | 0.0 | 33.45905 | 9 |
| TCTCGTA | 190 | 0.0 | 33.155426 | 41 |
| AGACCGG | 185 | 0.0 | 32.835392 | 28 |
| AGCGGTT | 195 | 0.0 | 32.305286 | 7 |
| GAGACCG | 190 | 0.0 | 31.971304 | 27 |
| GAGCGGT | 205 | 0.0 | 31.843172 | 6 |
| CGGAAGA | 220 | 0.0 | 31.727406 | 1 |