Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378366.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 931757 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAAGATCTCGTATGCC | 3124 | 0.3352805506156648 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2776 | 0.2979317568851106 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAAGATCTCGTATGCCGTC | 2138 | 0.22945896837909455 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 265 | 0.0 | 37.354256 | 43 |
| TGCCGTC | 285 | 0.0 | 34.732906 | 45 |
| ATGCCGT | 290 | 0.0 | 34.134064 | 44 |
| AGATCGG | 460 | 0.0 | 33.257103 | 25 |
| ATCGGAA | 475 | 0.0 | 32.680508 | 27 |
| TCGGAAG | 515 | 0.0 | 31.889593 | 28 |
| GATCGGA | 490 | 0.0 | 31.680084 | 26 |
| CGAGATC | 540 | 0.0 | 28.746744 | 23 |
| CCGAGAT | 560 | 0.0 | 27.720072 | 22 |
| GAGATCG | 580 | 0.0 | 26.764208 | 24 |
| AGACCGT | 655 | 0.0 | 25.073494 | 28 |
| CGTATGC | 660 | 0.0 | 24.883543 | 44 |
| CTCGTAT | 660 | 0.0 | 24.883543 | 42 |
| TCTCGTA | 660 | 0.0 | 24.883543 | 41 |
| GACCGTG | 665 | 0.0 | 24.69645 | 29 |
| GAGACCG | 665 | 0.0 | 24.69645 | 27 |
| CCGTGCA | 690 | 0.0 | 24.453753 | 31 |
| CGTGCAA | 680 | 0.0 | 24.151676 | 32 |
| TCGTATG | 680 | 0.0 | 24.151676 | 43 |
| GTATGCC | 690 | 0.0 | 24.127703 | 45 |