Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391238.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 701385 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4541 | 0.6474332926994447 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3213 | 0.45809362903398276 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTACATATCTCGTATGCCGTC | 1106 | 0.15768800302259103 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTACATATCTCGTATGCC | 1063 | 0.15155727596113402 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGTATT | 460 | 0.0 | 43.528194 | 24 |
| CGTCATA | 455 | 0.0 | 42.52316 | 24 |
| AGCCGAT | 450 | 0.0 | 42.495693 | 15 |
| GCCGATG | 450 | 0.0 | 42.495693 | 16 |
| TAAGCCG | 450 | 0.0 | 42.495693 | 13 |
| GGCGGTC | 475 | 0.0 | 42.15362 | 35 |
| TCGGTAT | 475 | 0.0 | 42.15362 | 23 |
| ACGTCAT | 460 | 0.0 | 42.06095 | 23 |
| CCGATGA | 455 | 0.0 | 42.028706 | 17 |
| TTCCTCG | 425 | 0.0 | 41.83122 | 10 |
| TTCGGTA | 480 | 0.0 | 41.71452 | 22 |
| TGACGTC | 465 | 0.0 | 41.608685 | 21 |
| ATTCGGT | 490 | 0.0 | 41.322342 | 21 |
| AGGCGGT | 490 | 0.0 | 41.322342 | 34 |
| GCGGTCT | 485 | 0.0 | 41.284473 | 36 |
| GACGTCA | 475 | 0.0 | 40.732716 | 22 |
| CGATGAC | 470 | 0.0 | 40.687363 | 18 |
| AATTCGG | 500 | 0.0 | 40.495895 | 20 |
| AAGCCGA | 475 | 0.0 | 40.25908 | 14 |
| TCGGGGA | 500 | 0.0 | 40.04594 | 14 |