FastQCFastQC Report
Mon 6 Jun 2016
ERR1378446.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378446.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences673017
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACATATCTCGTATGCC34620.5144000820187307Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACATATCTCGTATGCCGTC34190.5080109417741305Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT18750.27859623159593294Illumina Paired End PCR Primer 2 (96% over 30bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC8110.12050215670629419Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4400.037.33774643
ATGCCGT4700.034.95448744
TGCCGTC4800.034.2262745
ATCGGAA3350.026.8615927
GATCGGA3400.026.46656826
AGATCGG3700.024.3206325
TCGGAAG3850.023.95917928
CCGAGAT4100.022.49658222
CGGAAGA7250.022.0573561
GAGATCG4250.021.17325424
CGTATGC8100.020.8379144
CTCGTAT8100.020.83326542
TCGTATG8150.020.7100743
TATCTCG8200.020.57767139
AATGCCG12400.020.50091718
GTATGCC8250.020.4590445
GCCGTCT550.003929864620.4590445
ACCGTCA8200.020.30330330
TCTCGTA8350.020.20951341
GACCGTC8400.020.08772729