Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378355.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1250855 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3095 | 0.24743075736196443 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACGTTATCTCGTATGCC | 2790 | 0.223047435554081 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACGTTATCTCGTATGCCGTC | 2272 | 0.18163576113938068 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 240 | 0.0 | 38.43279 | 43 |
| ATGCCGT | 255 | 0.0 | 36.172035 | 44 |
| TGCCGTC | 285 | 0.0 | 32.364452 | 45 |
| ATCGGAA | 440 | 0.0 | 27.610252 | 27 |
| GATCGGA | 450 | 0.0 | 26.996689 | 26 |
| AGATCGG | 455 | 0.0 | 26.700022 | 25 |
| TCGGAAG | 510 | 0.0 | 24.702852 | 28 |
| CGTACGT | 555 | 0.0 | 23.510632 | 32 |
| CCGTACG | 565 | 0.0 | 23.094513 | 31 |
| ACCGTAC | 565 | 0.0 | 23.094513 | 30 |
| GTACGTT | 565 | 0.0 | 23.094513 | 33 |
| CGTTATC | 585 | 0.0 | 23.074095 | 36 |
| TACGTTA | 570 | 0.0 | 22.89193 | 34 |
| CTCGTAT | 575 | 0.0 | 22.69287 | 42 |
| GACCGTA | 580 | 0.0 | 22.497242 | 29 |
| CGTATGC | 595 | 0.0 | 21.930084 | 44 |
| TCTCGTA | 595 | 0.0 | 21.930084 | 41 |
| TCGTATG | 595 | 0.0 | 21.930084 | 43 |
| TATCTCG | 600 | 0.0 | 21.747334 | 39 |
| GAGACCG | 610 | 0.0 | 21.390821 | 27 |