Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378555.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 353125 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTAGATCTCGTATGCC | 1747 | 0.49472566371681415 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGTGTA | 190 | 0.0 | 41.44724 | 32 |
| AAGAGCG | 205 | 0.0 | 40.609627 | 4 |
| GACCGGT | 190 | 0.0 | 40.26303 | 29 |
| ATCTCGT | 200 | 0.0 | 39.374874 | 40 |
| ACCGGTG | 200 | 0.0 | 39.374874 | 30 |
| TCTCGTA | 200 | 0.0 | 39.374874 | 41 |
| CGGAAGA | 210 | 0.0 | 38.576767 | 1 |
| TCGTATG | 205 | 0.0 | 38.414513 | 43 |
| GAGACCG | 200 | 0.0 | 38.249878 | 27 |
| AGAGCGG | 225 | 0.0 | 37.99988 | 5 |
| CGGTTCA | 220 | 0.0 | 37.84079 | 9 |
| GGTGTAG | 210 | 0.0 | 37.49988 | 33 |
| CCGGTGT | 210 | 0.0 | 37.49988 | 31 |
| GCGGTTC | 225 | 0.0 | 36.999886 | 8 |
| CGTATGC | 215 | 0.0 | 36.627792 | 44 |
| CTCGTAT | 215 | 0.0 | 36.627792 | 42 |
| AGACCGG | 210 | 0.0 | 36.428455 | 28 |
| CGAGACC | 210 | 0.0 | 36.428455 | 26 |
| GAGCGGT | 235 | 0.0 | 36.382862 | 6 |
| AGCGGTT | 230 | 0.0 | 36.19554 | 7 |