Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378337.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 624627 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCACATTATCTCGTATGCC | 2182 | 0.3493284792364083 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2142 | 0.3429246574355575 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCACATTATCTCGTATGCCGTC | 1836 | 0.2939354206590493 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 185 | 0.0 | 38.914005 | 44 |
| TATGCCG | 195 | 0.0 | 36.91841 | 43 |
| TGCCGTC | 200 | 0.0 | 35.995453 | 45 |
| ATCGGAA | 300 | 0.0 | 32.99583 | 27 |
| GATCGGA | 310 | 0.0 | 31.93145 | 26 |
| AGATCGG | 325 | 0.0 | 30.457691 | 25 |
| TCGGAAG | 330 | 0.0 | 29.99621 | 28 |
| CCGTTCA | 40 | 6.167522E-4 | 28.121447 | 39 |
| GAGATCG | 385 | 0.0 | 26.295382 | 24 |
| CCGAGAT | 405 | 0.0 | 24.996841 | 22 |
| CGAGATC | 410 | 0.0 | 24.692003 | 23 |
| CGTATGC | 400 | 0.0 | 24.184444 | 44 |
| AGACCGC | 415 | 0.0 | 23.310308 | 28 |
| TCGTATG | 415 | 0.0 | 23.310308 | 43 |
| GTATGCC | 430 | 0.0 | 23.020348 | 45 |
| TCTCGTA | 405 | 0.0 | 22.7749 | 41 |
| CCGCACA | 425 | 0.0 | 22.761831 | 31 |
| GAGACCG | 435 | 0.0 | 22.755745 | 27 |
| CTCGTAT | 410 | 0.0 | 22.49716 | 42 |
| GACCGCA | 430 | 0.0 | 22.497158 | 29 |