Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378230.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 745074 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3572 | 0.47941546745692376 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTGAATCTCGTATGCC | 1953 | 0.26212161476578166 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTGAATCTCGTATGCCGTC | 1922 | 0.2579609542139438 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGATCGG | 530 | 0.0 | 39.054737 | 25 |
| TCGGAAG | 555 | 0.0 | 38.10629 | 28 |
| GATCGGA | 545 | 0.0 | 37.97984 | 26 |
| ATCGGAA | 550 | 0.0 | 37.634567 | 27 |
| TATGCCG | 310 | 0.0 | 34.839382 | 43 |
| ATGCCGT | 325 | 0.0 | 33.231415 | 44 |
| TGCCGTC | 330 | 0.0 | 32.72791 | 45 |
| CGAGATC | 635 | 0.0 | 32.59687 | 23 |
| CCGAGAT | 640 | 0.0 | 32.342205 | 22 |
| GAGATCG | 640 | 0.0 | 32.342205 | 24 |
| GTTCGTA | 30 | 0.00514731 | 29.99857 | 11 |
| ATGCCGA | 1140 | 0.0 | 28.419697 | 19 |
| AATGCCG | 1145 | 0.0 | 28.295593 | 18 |
| TGCCGAG | 1155 | 0.0 | 28.05061 | 20 |
| GAATGCC | 1235 | 0.0 | 26.415743 | 17 |
| CGGAAGA | 815 | 0.0 | 25.94968 | 29 |
| GCCGAGA | 1230 | 0.0 | 25.791452 | 21 |
| GGAATGC | 1320 | 0.0 | 24.544283 | 16 |
| AGCGGTT | 1555 | 0.0 | 21.418081 | 4 |
| GAGCGGT | 1540 | 0.0 | 21.33731 | 3 |