FastQCFastQC Report
Mon 6 Jun 2016
ERR1391266.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391266.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences585188
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA41230.7045599021169265No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA28070.4796749078928481No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCCGTC7160.12235384184227974Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCC6620.11312603812791786Illumina Paired End PCR Primer 2 (96% over 33bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA5920.10116407035004135No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGATG3850.043.2423216
GACGTCA3800.043.2192522
TGACGTC3800.043.2192521
CGTCATA3900.042.6879324
ATTCGGT4500.042.49564421
CCGATGA3900.042.11106517
ACGTCAT3900.042.11106523
GCGGTCT4550.042.0286636
TCGGGGA4550.042.0286614
TTCGGTA4550.042.0286622
GGCGGTC4500.041.99569335
AGCCGAT3950.041.5780215
CGGGGAA4600.041.57182315
GAATTCG4600.041.57182319
TCGGTAT4600.041.57182323
TCCTCGG3800.041.4608311
AATTCGG4650.041.12481720
CGGTATT4650.041.12481724
AGGCGGT4600.041.08274534
AAGCCGA4000.041.0582914