Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378531.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 344065 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTATCTATCTCGTATGCC | 1890 | 0.5493148097016551 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATCTCG | 255 | 0.0 | 44.116505 | 39 |
| TCGTATG | 255 | 0.0 | 44.116505 | 43 |
| GACCGGT | 260 | 0.0 | 43.268112 | 29 |
| CCGGTAT | 255 | 0.0 | 43.234177 | 31 |
| CGGTATC | 265 | 0.0 | 42.451736 | 32 |
| ATCTCGT | 270 | 0.0 | 41.66559 | 40 |
| ACCGGTA | 270 | 0.0 | 41.66559 | 30 |
| CGTATGC | 270 | 0.0 | 41.66559 | 44 |
| TCTCGTA | 270 | 0.0 | 41.66559 | 41 |
| GTATGCC | 280 | 0.0 | 40.981087 | 45 |
| AGACCGG | 275 | 0.0 | 40.908035 | 28 |
| GAGACCG | 285 | 0.0 | 40.262115 | 27 |
| CTCGTAT | 280 | 0.0 | 40.177536 | 42 |
| AAGAGCG | 305 | 0.0 | 37.62745 | 4 |
| CGAGACC | 305 | 0.0 | 37.62198 | 26 |
| GCGGTTC | 305 | 0.0 | 36.889656 | 8 |
| AGCGGTT | 305 | 0.0 | 36.889656 | 7 |
| AGAGCGG | 315 | 0.0 | 36.432926 | 5 |
| CGGTTCA | 310 | 0.0 | 36.289387 | 9 |
| CCGAGAC | 310 | 0.0 | 36.289387 | 25 |