Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378554.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 139427 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACGTAGATCTCGTATGCC | 2640 | 1.893463963220897 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 248 | 0.17787085715105397 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATCTCGT | 245 | 0.0 | 44.996056 | 40 |
| CGTATGC | 245 | 0.0 | 44.996056 | 44 |
| GATCGGA | 30 | 2.1530523E-6 | 44.996056 | 18 |
| CGACGTA | 240 | 0.0 | 44.996056 | 32 |
| CGTAGAT | 245 | 0.0 | 44.996056 | 35 |
| TCTCGTA | 245 | 0.0 | 44.996056 | 41 |
| GACCGAC | 230 | 0.0 | 44.99605 | 29 |
| CTCGTAT | 250 | 0.0 | 44.096134 | 42 |
| GACGTAG | 245 | 0.0 | 44.077766 | 33 |
| ACCGACG | 245 | 0.0 | 44.077766 | 30 |
| ACGTAGA | 245 | 0.0 | 44.077766 | 34 |
| GAGACCG | 240 | 0.0 | 44.058636 | 27 |
| GTATGCC | 255 | 0.0 | 43.231503 | 45 |
| TCGTATG | 255 | 0.0 | 43.231503 | 43 |
| AGACCGA | 240 | 0.0 | 43.12122 | 28 |
| GATCTCG | 265 | 0.0 | 42.44911 | 39 |
| GTAGATC | 260 | 0.0 | 42.40013 | 36 |
| CCGACGT | 255 | 0.0 | 42.349228 | 31 |
| AGATCTC | 275 | 0.0 | 40.905506 | 38 |
| CGAGACC | 265 | 0.0 | 39.902164 | 26 |