Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378449.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1071162 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGTATATCTCGTATGCC | 3260 | 0.30434238705256533 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGTATATCTCGTATGCCGTC | 2961 | 0.27642877547933925 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1392 | 0.1299523321402365 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 405 | 0.0 | 37.232727 | 43 |
| ATGCCGT | 450 | 0.0 | 33.009315 | 44 |
| TGCCGTC | 460 | 0.0 | 32.29172 | 45 |
| AGATCGG | 395 | 0.0 | 22.213161 | 25 |
| GATCGGA | 395 | 0.0 | 22.213161 | 26 |
| CTCGTAT | 730 | 0.0 | 21.576395 | 42 |
| CGCTGTA | 735 | 0.0 | 21.429615 | 32 |
| GACCGCT | 740 | 0.0 | 21.284822 | 29 |
| TCTCGTA | 740 | 0.0 | 21.284822 | 41 |
| CGTATGC | 745 | 0.0 | 21.146906 | 44 |
| TCGTATG | 745 | 0.0 | 21.146906 | 43 |
| CGGAAGA | 810 | 0.0 | 21.12496 | 1 |
| ACCGCTG | 755 | 0.0 | 20.861944 | 30 |
| CCGCTGT | 760 | 0.0 | 20.724695 | 31 |
| TATCTCG | 760 | 0.0 | 20.72276 | 39 |
| ATCGGAA | 430 | 0.0 | 20.407019 | 27 |
| AGACCGC | 775 | 0.0 | 20.322622 | 28 |
| GAGACCG | 785 | 0.0 | 20.063736 | 27 |
| AATGCCG | 1190 | 0.0 | 20.040188 | 18 |
| ATGCCGA | 1190 | 0.0 | 20.040188 | 19 |