Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378234.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 897449 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4378 | 0.48782716343769955 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCCGTC | 2336 | 0.2602933425743413 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCC | 2237 | 0.24926207505941841 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 300 | 0.0 | 41.251072 | 43 |
| TGCCGTC | 330 | 0.0 | 37.500973 | 45 |
| GATCGGA | 630 | 0.0 | 36.07036 | 26 |
| ATGCCGT | 350 | 0.0 | 36.00094 | 44 |
| AGATCGG | 655 | 0.0 | 35.380627 | 25 |
| TCGGAAG | 685 | 0.0 | 34.488026 | 28 |
| ATCGGAA | 665 | 0.0 | 34.171917 | 27 |
| CCGAGAT | 725 | 0.0 | 31.964567 | 22 |
| CGAGATC | 730 | 0.0 | 31.745632 | 23 |
| GAGATCG | 735 | 0.0 | 31.529673 | 24 |
| ATGCCGA | 1255 | 0.0 | 29.042963 | 19 |
| TGCCGAG | 1290 | 0.0 | 28.080563 | 20 |
| AATGCCG | 1300 | 0.0 | 27.864555 | 18 |
| GCCGAGA | 1335 | 0.0 | 26.628422 | 21 |
| GAATGCC | 1430 | 0.0 | 25.331415 | 17 |
| CGGAAGA | 955 | 0.0 | 24.737484 | 29 |
| GGAATGC | 1505 | 0.0 | 24.368046 | 16 |
| CGAGTGT | 570 | 0.0 | 21.70988 | 29 |
| CGTATGC | 575 | 0.0 | 21.522297 | 41 |
| AGGAATG | 1720 | 0.0 | 21.32204 | 15 |