Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378484.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 860695 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCAGTATCTCGTATGCC | 3273 | 0.3802740808300269 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCAGTATCTCGTATGCCGTC | 2846 | 0.330663010706464 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1512 | 0.17567198601130482 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 460 | 0.0 | 37.18611 | 44 |
| TATGCCG | 485 | 0.0 | 35.2693 | 43 |
| TGCCGTC | 485 | 0.0 | 35.2693 | 45 |
| CCTTCGT | 105 | 2.3392204E-9 | 23.592875 | 1 |
| GATCGGA | 275 | 0.0 | 22.087885 | 26 |
| CGTATGC | 800 | 0.0 | 21.65832 | 41 |
| CGGAAGA | 625 | 0.0 | 21.619652 | 1 |
| GTATGCC | 805 | 0.0 | 21.526297 | 42 |
| CTCGTAT | 800 | 0.0 | 21.372074 | 39 |
| TCTCGTA | 805 | 0.0 | 21.239328 | 38 |
| AGACCGA | 830 | 0.0 | 21.141685 | 25 |
| TATCTCG | 820 | 0.0 | 21.125158 | 36 |
| TCGTATG | 825 | 0.0 | 20.997128 | 40 |
| ATCTCGT | 825 | 0.0 | 20.724438 | 37 |
| ATCGGAA | 295 | 0.0 | 20.590403 | 27 |
| AATGCCG | 1130 | 0.0 | 20.506044 | 18 |
| CGCCCGG | 100 | 9.0613867E-7 | 20.247229 | 13 |
| ATGCCGA | 1185 | 0.0 | 20.123829 | 19 |
| GACCGAG | 880 | 0.0 | 19.940453 | 26 |
| ACCGAGC | 880 | 0.0 | 19.940453 | 27 |