Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378448.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 608130 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACTACATCTCGTATGCCGTC | 4269 | 0.7019880617631098 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACTACATCTCGTATGCC | 3881 | 0.6381859141959778 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1583 | 0.2603061845329124 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 726 | 0.11938236890138622 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 480 | 0.0 | 37.985893 | 43 |
| ATGCCGT | 485 | 0.0 | 37.594288 | 44 |
| TGCCGTC | 505 | 0.0 | 36.105408 | 45 |
| ACCGCGT | 25 | 0.002105064 | 36.00441 | 7 |
| AGATCGG | 310 | 0.0 | 26.125786 | 25 |
| CGGAAGA | 780 | 0.0 | 25.121954 | 1 |
| ATCGGAA | 325 | 0.0 | 24.919981 | 27 |
| GATCGGA | 330 | 0.0 | 24.542406 | 26 |
| TCGGAAG | 360 | 0.0 | 22.497204 | 28 |
| CGTACTA | 925 | 0.0 | 21.402746 | 32 |
| TCGTATG | 925 | 0.0 | 21.171719 | 43 |
| TCTCGTA | 930 | 0.0 | 21.047504 | 41 |
| GACCGTA | 920 | 0.0 | 21.029995 | 29 |
| GTATGCC | 935 | 0.0 | 20.945284 | 45 |
| CCGTACT | 930 | 0.0 | 20.803867 | 31 |
| GAAGAGC | 975 | 0.0 | 20.775192 | 3 |
| GTACTAC | 955 | 0.0 | 20.73041 | 33 |
| AGACCGT | 935 | 0.0 | 20.692616 | 28 |
| ACCGTAC | 935 | 0.0 | 20.692616 | 30 |
| CGTATGC | 960 | 0.0 | 20.634314 | 44 |