Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378098.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 734373 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATCCTAATCTCGTATGCCGTC | 2944 | 0.4008861981581567 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1608 | 0.21896229845051493 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCCTAATCTCGTATGCC | 1549 | 0.2109282340173182 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1157 | 0.1575493652408245 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 175 | 0.0 | 42.42401 | 15 |
| GGCGGTC | 185 | 0.0 | 41.34691 | 35 |
| GACGTCA | 180 | 0.0 | 41.245567 | 22 |
| TGCCGTC | 400 | 0.0 | 40.5122 | 45 |
| TCGGTAT | 195 | 0.0 | 40.380276 | 23 |
| GCGGTCT | 190 | 0.0 | 40.25883 | 36 |
| CGGGGAA | 190 | 0.0 | 40.25883 | 15 |
| AATTCGG | 190 | 0.0 | 40.25883 | 20 |
| CGGTATT | 190 | 0.0 | 40.25883 | 24 |
| GCCGATG | 185 | 0.0 | 40.130825 | 16 |
| ATGCCGT | 410 | 0.0 | 39.50795 | 44 |
| TATGCCG | 415 | 0.0 | 39.03195 | 43 |
| ACGCCCG | 35 | 6.249813E-6 | 38.567287 | 12 |
| TCGGGGA | 205 | 0.0 | 38.410507 | 14 |
| AGGCGGT | 200 | 0.0 | 38.24589 | 34 |
| CCGATGA | 195 | 0.0 | 38.072834 | 17 |
| TTCGGTA | 205 | 0.0 | 37.313065 | 22 |
| GAATTCG | 205 | 0.0 | 37.313065 | 19 |
| TCCTCGG | 170 | 0.0 | 37.072514 | 11 |
| ACGTCAT | 205 | 0.0 | 36.215622 | 23 |