Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378164.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1058139 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCC | 1188 | 0.11227258422570191 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACCGTAG | 130 | 0.0 | 39.804848 | 30 |
| GTAGACG | 140 | 0.0 | 38.570496 | 33 |
| GACCGTA | 140 | 0.0 | 36.961647 | 29 |
| CGTATGC | 160 | 0.0 | 36.56162 | 44 |
| TAGACGA | 150 | 0.0 | 35.999134 | 34 |
| TCTCGTA | 165 | 0.0 | 35.455364 | 41 |
| CGTAGAC | 155 | 0.0 | 34.83787 | 32 |
| CCGTAGA | 150 | 0.0 | 34.49917 | 31 |
| ATCTCGT | 170 | 0.0 | 34.412563 | 40 |
| CTCGTAT | 170 | 0.0 | 34.412563 | 42 |
| GACGATC | 175 | 0.0 | 33.429344 | 36 |
| AGACCGT | 155 | 0.0 | 33.384716 | 28 |
| GAGACCG | 175 | 0.0 | 32.140564 | 27 |
| AGACGAT | 190 | 0.0 | 30.78873 | 35 |
| TCGTATG | 200 | 0.0 | 29.249294 | 43 |
| AGATCGG | 85 | 2.0372681E-10 | 29.115568 | 17 |
| GATCGGA | 85 | 2.0372681E-10 | 29.115568 | 18 |
| GCGGTTC | 210 | 0.0 | 26.783802 | 8 |
| ACGATCT | 225 | 0.0 | 26.0006 | 37 |
| GTATGCC | 225 | 0.0 | 25.99937 | 45 |