Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378105.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 902756 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2327 | 0.2577662181143078 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGAAGAATCTCGTATGCCGTC | 1467 | 0.16250238159591296 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1421 | 0.15740687406120812 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 120 | 0.0 | 41.244568 | 43 |
| AGCCGAT | 235 | 0.0 | 40.209694 | 15 |
| TCGGTAT | 215 | 0.0 | 38.717976 | 23 |
| GCCGATG | 245 | 0.0 | 38.568485 | 16 |
| ACGTCAT | 245 | 0.0 | 38.568485 | 23 |
| CGTCATA | 245 | 0.0 | 38.568485 | 24 |
| TAAGCCG | 245 | 0.0 | 38.56635 | 13 |
| GGCGGTC | 220 | 0.0 | 37.83802 | 35 |
| GCGGTCT | 230 | 0.0 | 37.171078 | 36 |
| CGATGAC | 255 | 0.0 | 37.056 | 18 |
| CGGTATT | 225 | 0.0 | 36.997177 | 24 |
| TCGGGGA | 225 | 0.0 | 36.99513 | 14 |
| ATTCGGT | 235 | 0.0 | 36.3802 | 21 |
| ATGACGT | 260 | 0.0 | 36.34338 | 20 |
| GATGACG | 260 | 0.0 | 36.34338 | 19 |
| AAGCCGA | 260 | 0.0 | 36.34137 | 14 |
| GACGTCA | 265 | 0.0 | 35.657658 | 22 |
| TGACGTC | 265 | 0.0 | 35.657658 | 21 |
| CTCGGGG | 190 | 0.0 | 35.521637 | 13 |
| AGGCGGT | 235 | 0.0 | 35.42283 | 34 |