FastQCFastQC Report
Mon 6 Jun 2016
ERR1378546.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378546.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences315332
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCC23320.7395380107315465Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATGCC3350.042.98492445
TCTCGTA3350.042.98492441
CTCGTAT3400.042.35279542
CGCATGA3400.042.35279532
ATCTCGT3450.041.73898740
CGTATGC3500.041.1427144
ACCGCAT3500.041.1427130
CCGCATG3500.041.1427131
GACCGCA3550.040.56323629
TCGTATG3550.040.56323643
AGACCGC3500.040.49985528
GAGACCG3550.039.92943627
GATCTCG3650.039.45191639
CGAGACC3750.037.7998726
AGCGGTT4250.033.8822337
CGGTTCA4300.033.4882559
GAGATCT4300.033.48825537
CGGAAGA4100.033.4808041
CCGAGAC4250.033.35282525
GCGGTTC4350.033.1033338