Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378568.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 322701 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAGAATCTCGTATGCC | 2008 | 0.6222478393311456 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGTATG | 240 | 0.0 | 42.187496 | 43 |
| CGTATGC | 240 | 0.0 | 41.249996 | 44 |
| CTCGTAT | 240 | 0.0 | 41.249996 | 42 |
| AGACCGG | 235 | 0.0 | 41.17021 | 28 |
| ATCTCGT | 245 | 0.0 | 40.408165 | 40 |
| ACCGGCT | 245 | 0.0 | 40.408165 | 30 |
| TCTCGTA | 245 | 0.0 | 40.408165 | 41 |
| CGGCTAG | 245 | 0.0 | 40.408165 | 32 |
| GAGACCG | 240 | 0.0 | 40.312496 | 27 |
| GACCGGC | 250 | 0.0 | 39.6 | 29 |
| GCGGTTC | 260 | 0.0 | 38.94231 | 8 |
| AGCGGTT | 260 | 0.0 | 38.94231 | 7 |
| CGGAAGA | 255 | 0.0 | 38.82353 | 1 |
| CCGGCTA | 255 | 0.0 | 38.82353 | 31 |
| ATGCCGA | 265 | 0.0 | 38.207546 | 22 |
| GAGCGGT | 260 | 0.0 | 38.076927 | 6 |
| AGAGCGG | 260 | 0.0 | 38.076927 | 5 |
| AATGCCG | 270 | 0.0 | 37.500004 | 21 |
| CGAGACC | 260 | 0.0 | 37.21154 | 26 |
| CGGTTCA | 275 | 0.0 | 36.818184 | 9 |