Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378123.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 676405 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1330 | 0.19662775999586046 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACATCTATCTCGTATGCCGTC | 1313 | 0.19411447283801864 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACATCTATCTCGTATGCC | 1261 | 0.18642677094344365 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 968 | 0.14310952757593454 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGGTAT | 175 | 0.0 | 41.140556 | 23 |
| CGATGAC | 145 | 0.0 | 40.34257 | 18 |
| GCCGATG | 140 | 0.0 | 40.17336 | 16 |
| AGGCGGT | 175 | 0.0 | 39.85197 | 34 |
| TGCCGTC | 155 | 0.0 | 39.194256 | 45 |
| TCGGGGA | 190 | 0.0 | 39.073875 | 14 |
| ATGACGT | 150 | 0.0 | 38.99782 | 20 |
| AATTCGG | 185 | 0.0 | 38.916744 | 20 |
| TAAGCCG | 145 | 0.0 | 38.78807 | 13 |
| GGCGGTC | 180 | 0.0 | 38.744972 | 35 |
| CGGGGAA | 195 | 0.0 | 38.071983 | 15 |
| GACGTCA | 155 | 0.0 | 37.73983 | 22 |
| GATGACG | 155 | 0.0 | 37.73983 | 19 |
| CCGATGA | 155 | 0.0 | 37.737038 | 17 |
| CGGTCTC | 185 | 0.0 | 37.69781 | 37 |
| GCGGTCT | 190 | 0.0 | 36.70576 | 36 |
| ACGTCAT | 160 | 0.0 | 36.56046 | 23 |
| TTCGGTA | 200 | 0.0 | 35.99799 | 22 |
| CGGTATT | 200 | 0.0 | 35.99799 | 24 |
| GAATTCG | 200 | 0.0 | 35.99799 | 19 |