Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378561.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 335557 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGCAATCTCGTATGCC | 2081 | 0.6201628933385386 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGAGTGC | 265 | 0.0 | 44.999252 | 32 |
| CGTATGC | 275 | 0.0 | 43.36292 | 44 |
| CTCGTAT | 275 | 0.0 | 43.36292 | 42 |
| ATCTCGT | 280 | 0.0 | 42.58858 | 40 |
| CCGAGTG | 280 | 0.0 | 42.58858 | 31 |
| TCTCGTA | 285 | 0.0 | 41.84141 | 41 |
| GAGACCG | 295 | 0.0 | 41.18576 | 27 |
| GACCGAG | 300 | 0.0 | 40.49933 | 29 |
| ACCGAGT | 295 | 0.0 | 40.42306 | 30 |
| TCGTATG | 295 | 0.0 | 40.42306 | 43 |
| CGAGACC | 300 | 0.0 | 39.74934 | 26 |
| AATCTCG | 305 | 0.0 | 39.09771 | 39 |
| CCGGGCA | 35 | 6.229404E-6 | 38.576538 | 1 |
| AGACCGA | 315 | 0.0 | 38.57079 | 28 |
| CCGAGAC | 310 | 0.0 | 38.467106 | 25 |
| GTATGCC | 320 | 0.0 | 37.265007 | 45 |
| GCGGTTC | 345 | 0.0 | 35.86897 | 8 |
| AGAGCGG | 350 | 0.0 | 35.361828 | 5 |
| CGGTTCA | 350 | 0.0 | 35.356556 | 9 |
| AGCGGTT | 350 | 0.0 | 35.356556 | 7 |