FastQCFastQC Report
Mon 6 Jun 2016
ERR1378479.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378479.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences865299
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCCGTC34290.3962792052227034Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCC26270.3035944800583382Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT16270.18802749107533928Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4350.037.76696443
ATGCCGT5200.031.5935244
TGCCGTC5300.030.99741645
AGACCGT7000.023.46133225
TAGACGA7000.023.14128131
GACCGTA7100.023.13089226
TCTCGTA7150.022.97046338
ACCGTAG7150.022.96913727
GTAGACG7100.022.8153530
CGTAGAC7100.022.8153529
CGTATGC7250.022.65886941
CCGTAGA7150.022.655828
CTCGTAT7300.022.4984739
ATCTCGT7800.022.21002637
TCGTATG7600.021.90640440
AGACGAT7650.021.76322632
GAGACCG7600.021.60912324
GACGATC7750.021.19210433
ACGATCT7950.020.9419734
AATGCCG11350.020.81235718