Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378451.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1202773 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACTACTATCTCGTATGCCGTC | 2149 | 0.17867045568864615 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACTACTATCTCGTATGCC | 1759 | 0.14624538462369874 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 260 | 0.0 | 31.160814 | 43 |
| GAACCGC | 55 | 4.1686853E-6 | 28.633242 | 11 |
| TACGGTT | 40 | 6.1582524E-4 | 28.13129 | 44 |
| ATGCCGT | 320 | 0.0 | 25.318161 | 44 |
| TGCCGTC | 330 | 0.0 | 24.550943 | 45 |
| TCTCGTA | 460 | 0.0 | 23.47863 | 41 |
| CGACTAC | 470 | 0.0 | 22.978128 | 32 |
| CTCGTAT | 465 | 0.0 | 22.742292 | 42 |
| CGTATGC | 475 | 0.0 | 22.741926 | 44 |
| CCGACTA | 465 | 0.0 | 22.741348 | 31 |
| ACCGACT | 465 | 0.0 | 22.740402 | 30 |
| GACCGAC | 475 | 0.0 | 22.261656 | 29 |
| TCGTATG | 505 | 0.0 | 21.39092 | 43 |
| TCGGAAG | 255 | 0.0 | 21.175043 | 28 |
| GATCGGA | 255 | 0.0 | 21.174162 | 26 |
| TATCTCG | 500 | 0.0 | 21.148571 | 39 |
| AGACCGA | 500 | 0.0 | 21.148571 | 28 |
| GAGACCG | 515 | 0.0 | 20.96946 | 27 |
| ATCTCGT | 505 | 0.0 | 20.939182 | 40 |
| AGATCGG | 290 | 0.0 | 20.170216 | 25 |