FastQCFastQC Report
Mon 6 Jun 2016
ERR1391169.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391169.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1014194
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA33060.32597313728931543No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA24070.2373313192545016No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT19130.1886226895446039Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGACGAGTATCTCGTATGCCGTC12230.12058836869474678Illumina Paired End PCR Primer 2 (96% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1300.041.53800643
TTCGGTA3150.041.42811622
TCGGTAT3150.041.42811623
TGACGTC3750.041.39954421
GATTCGG556.184564E-1140.90864611
GACGTCA3800.040.85481322
GGCGGTC3200.040.780835
CGGTATT3300.040.2268324
GCGGTCT3250.040.15340836
TAAGCCG3950.039.30336813
TTCCTCG2750.039.27229710
ATTCGGT3400.039.04369421
AGGCGGT3400.039.04369434
CCGATGA4000.038.81207717
ACGTCAT4000.038.81207723
AAGCCGA4050.038.33291214
CGTCATA4150.037.95139324
CGATGAC4100.037.8654418
AGCCGAT4150.037.4092315
GCCGATG4150.037.4092316