Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378446.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 673017 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACATATCTCGTATGCC | 3462 | 0.5144000820187307 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACATATCTCGTATGCCGTC | 3419 | 0.5080109417741305 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1875 | 0.27859623159593294 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 811 | 0.12050215670629419 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 440 | 0.0 | 37.337746 | 43 |
| ATGCCGT | 470 | 0.0 | 34.954487 | 44 |
| TGCCGTC | 480 | 0.0 | 34.22627 | 45 |
| ATCGGAA | 335 | 0.0 | 26.86159 | 27 |
| GATCGGA | 340 | 0.0 | 26.466568 | 26 |
| AGATCGG | 370 | 0.0 | 24.32063 | 25 |
| TCGGAAG | 385 | 0.0 | 23.959179 | 28 |
| CCGAGAT | 410 | 0.0 | 22.496582 | 22 |
| CGGAAGA | 725 | 0.0 | 22.057356 | 1 |
| GAGATCG | 425 | 0.0 | 21.173254 | 24 |
| CGTATGC | 810 | 0.0 | 20.83791 | 44 |
| CTCGTAT | 810 | 0.0 | 20.833265 | 42 |
| TCGTATG | 815 | 0.0 | 20.71007 | 43 |
| TATCTCG | 820 | 0.0 | 20.577671 | 39 |
| AATGCCG | 1240 | 0.0 | 20.500917 | 18 |
| GTATGCC | 825 | 0.0 | 20.45904 | 45 |
| GCCGTCT | 55 | 0.0039298646 | 20.45904 | 45 |
| ACCGTCA | 820 | 0.0 | 20.303303 | 30 |
| TCTCGTA | 835 | 0.0 | 20.209513 | 41 |
| GACCGTC | 840 | 0.0 | 20.087727 | 29 |