Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391353.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 820717 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1050 | 0.1279369136986318 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTTACG | 85 | 0.0 | 39.687763 | 32 |
| AGATCGG | 190 | 0.0 | 37.87514 | 17 |
| GATCGGA | 195 | 0.0 | 36.906227 | 18 |
| TCGGAAG | 195 | 0.0 | 36.906227 | 20 |
| ATCGGAA | 200 | 0.0 | 35.983574 | 19 |
| CCGTTAC | 95 | 0.0 | 35.510105 | 31 |
| GACCGTT | 100 | 0.0 | 33.736656 | 29 |
| ACCGTTA | 100 | 0.0 | 33.736656 | 30 |
| CGTATGC | 100 | 0.0 | 33.7346 | 44 |
| TCTCGTA | 100 | 0.0 | 33.7346 | 41 |
| TTACGTA | 105 | 0.0 | 32.12819 | 34 |
| TACGTAT | 105 | 0.0 | 32.12819 | 35 |
| ATCTCGT | 115 | 0.0 | 29.334435 | 40 |
| GTTACGT | 115 | 0.0 | 29.334435 | 33 |
| CGAGATC | 250 | 0.0 | 28.785107 | 15 |
| TCGTATG | 135 | 0.0 | 28.320404 | 43 |
| TATCTCG | 120 | 0.0 | 28.112167 | 39 |
| CGGAAGA | 270 | 0.0 | 27.487452 | 21 |
| AGACCGT | 125 | 0.0 | 26.989325 | 28 |
| ACGTATC | 125 | 0.0 | 26.987682 | 36 |