Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391233.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 489836 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2767 | 0.5648829404127096 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1993 | 0.406870871067051 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATAGAATCTCGTATGCCGTC | 898 | 0.1833266644346271 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATAGAATCTCGTATGCC | 799 | 0.16311581835553124 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 554 | 0.11309907805877885 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACGTCA | 385 | 0.0 | 43.243908 | 22 |
| CGATGAC | 375 | 0.0 | 43.19716 | 18 |
| GATGACG | 380 | 0.0 | 42.628773 | 19 |
| TGACGTC | 395 | 0.0 | 42.149124 | 21 |
| CGTCATA | 395 | 0.0 | 42.149124 | 24 |
| ATGACGT | 390 | 0.0 | 42.112614 | 20 |
| CCGATGA | 385 | 0.0 | 42.075153 | 17 |
| TAAGCCG | 385 | 0.0 | 42.075153 | 13 |
| GCCGATG | 380 | 0.0 | 42.03671 | 16 |
| CTCGGGG | 275 | 0.0 | 41.724525 | 13 |
| ACGTCAT | 400 | 0.0 | 41.62226 | 23 |
| AAGCCGA | 385 | 0.0 | 41.490776 | 14 |
| GGCGGTC | 320 | 0.0 | 41.481647 | 35 |
| CGGTCTC | 320 | 0.0 | 41.481647 | 37 |
| TCCTCGG | 290 | 0.0 | 41.12638 | 11 |
| GCGGTCT | 330 | 0.0 | 40.9064 | 36 |
| AATTCGG | 325 | 0.0 | 40.843464 | 20 |
| TTCGGTA | 325 | 0.0 | 40.843464 | 22 |
| AGCCGAT | 395 | 0.0 | 40.440376 | 15 |
| TCGGGGA | 325 | 0.0 | 40.151203 | 14 |