Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391173.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1159220 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2771 | 0.23904004416762997 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1955 | 0.16864788392194752 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1317 | 0.11361087627887718 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCGGTCT | 265 | 0.0 | 41.603016 | 36 |
| GGCGGTC | 265 | 0.0 | 41.603016 | 35 |
| TTCGGTA | 265 | 0.0 | 41.603016 | 22 |
| TCGGTAT | 265 | 0.0 | 41.603016 | 23 |
| TAAGCCG | 350 | 0.0 | 40.499264 | 13 |
| TCGGGGA | 275 | 0.0 | 40.09018 | 14 |
| ATTCGGT | 280 | 0.0 | 39.374283 | 21 |
| CGTCATA | 365 | 0.0 | 38.83491 | 24 |
| CCGATGA | 360 | 0.0 | 38.74929 | 17 |
| TGACGTC | 360 | 0.0 | 38.74929 | 21 |
| AGGCGGT | 285 | 0.0 | 38.683506 | 34 |
| AATTCGG | 285 | 0.0 | 38.683506 | 20 |
| AGCCGAT | 370 | 0.0 | 38.310112 | 15 |
| GATCGGA | 160 | 0.0 | 37.968056 | 26 |
| ATCGGAA | 155 | 0.0 | 37.74125 | 27 |
| GACGTCA | 370 | 0.0 | 37.702015 | 22 |
| GCCGATG | 370 | 0.0 | 37.702015 | 16 |
| ACGTCAT | 380 | 0.0 | 37.301952 | 23 |
| CGATGAC | 375 | 0.0 | 37.19932 | 18 |
| TATGCCG | 130 | 0.0 | 36.345493 | 43 |