Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378490.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1035835 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACGTATCTCGTATGCCGTC | 5977 | 0.5770224022165692 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACGTATCTCGTATGCC | 5275 | 0.5092509907465957 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2648 | 0.2556391703311821 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1240 | 0.1197101855025173 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 730 | 0.0 | 38.531284 | 43 |
| TGCCGTC | 735 | 0.0 | 37.963013 | 45 |
| ATGCCGT | 730 | 0.0 | 37.914783 | 44 |
| TGCGTTA | 40 | 6.169056E-4 | 28.122406 | 12 |
| AGACGTA | 1265 | 0.0 | 22.58794 | 31 |
| GAGACGT | 1255 | 0.0 | 22.409374 | 30 |
| GACGTAT | 1275 | 0.0 | 22.234316 | 32 |
| ACGTATC | 1285 | 0.0 | 21.886196 | 33 |
| CTCGTAT | 1275 | 0.0 | 21.88139 | 39 |
| TCGTATG | 1275 | 0.0 | 21.88139 | 40 |
| CGTATCT | 1290 | 0.0 | 21.801367 | 34 |
| TATCTCG | 1280 | 0.0 | 21.795918 | 36 |
| CGTATGC | 1295 | 0.0 | 21.71929 | 41 |
| CGAGACG | 1305 | 0.0 | 21.550777 | 29 |
| AGACCGA | 1285 | 0.0 | 21.534977 | 25 |
| TCTCGTA | 1315 | 0.0 | 21.215796 | 38 |
| GAGACCG | 1310 | 0.0 | 21.124004 | 24 |
| GACCGAG | 1325 | 0.0 | 21.05466 | 26 |
| ACCGAGA | 1330 | 0.0 | 20.97551 | 27 |
| ATCTCGT | 1345 | 0.0 | 20.742582 | 37 |