Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378179.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 477404 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTGAATCTCGTATGCC | 1388 | 0.2907390805271845 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 150 | 0.0 | 42.003033 | 41 |
| GACCGGT | 150 | 0.0 | 41.99863 | 29 |
| AGACCGG | 150 | 0.0 | 41.99863 | 28 |
| CGTATGC | 160 | 0.0 | 39.377842 | 44 |
| CTCGTAT | 160 | 0.0 | 39.377842 | 42 |
| ACCGGTG | 160 | 0.0 | 39.37372 | 30 |
| GAGACCG | 160 | 0.0 | 39.37372 | 27 |
| CCGGTGT | 160 | 0.0 | 39.37372 | 31 |
| TCGTATG | 170 | 0.0 | 37.057617 | 43 |
| AGATCGG | 50 | 4.8747097E-8 | 35.995056 | 17 |
| GATCGGA | 50 | 4.8747097E-8 | 35.995056 | 18 |
| GTATGCC | 175 | 0.0 | 34.71679 | 45 |
| ATCTCGT | 185 | 0.0 | 34.06008 | 40 |
| AATCTCG | 190 | 0.0 | 33.16376 | 39 |
| CGGTGTG | 190 | 0.0 | 33.156815 | 32 |
| GAGCGGT | 215 | 0.0 | 31.404196 | 6 |
| GCGGTTC | 215 | 0.0 | 31.38775 | 8 |
| AAGAGCG | 220 | 0.0 | 30.690464 | 4 |
| AGCGGTT | 220 | 0.0 | 30.674393 | 7 |
| ATCGCGC | 30 | 0.0051371967 | 30.008453 | 5 |