FastQCFastQC Report
Mon 6 Jun 2016
ERR1391187.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391187.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences619188
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA25010.40391609656517896No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA17340.280044186902847No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT10140.163762863621388Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCCGAT2250.042.99830215
GCGGTCT2550.042.35126536
CCGATGA2250.041.99834417
TCGGTAT2750.041.72562423
GGCGGTC2600.041.53682335
ACGTCAT2350.041.16858723
TAAGCCG2350.041.16858713
GACGTCA2300.041.08533522
GCCGATG2300.041.08533516
CGTCATA2300.041.08533524
AATTCGG2700.040.83172220
AAGCCGA2450.040.40656714
GATGACG2350.040.21117819
CGGTATT2750.040.08932524
GAATTCG2750.040.08932519
ATTCGGT2800.039.37344421
TTCGGTA2800.039.37344422
TATGCCG750.039.0016143
TGACGTC2450.038.56990421
ATGACGT2450.038.56990420