Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391259.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 660550 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4088 | 0.6188782075543108 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2706 | 0.4096586178184846 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCCGTC | 2281 | 0.3453182953599273 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCC | 1831 | 0.2771932480508667 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1018 | 0.15411399591249716 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 435 | 0.0 | 44.995308 | 13 |
| TATGCCG | 280 | 0.0 | 43.388332 | 43 |
| AGCCGAT | 455 | 0.0 | 43.017487 | 15 |
| GCCGATG | 455 | 0.0 | 43.017487 | 16 |
| ACGTCAT | 455 | 0.0 | 43.017487 | 23 |
| GACGTCA | 460 | 0.0 | 42.549908 | 22 |
| ATGACGT | 460 | 0.0 | 42.549908 | 20 |
| GATGACG | 460 | 0.0 | 42.549908 | 19 |
| CGTCATA | 460 | 0.0 | 42.549908 | 24 |
| AAGCCGA | 465 | 0.0 | 42.09238 | 14 |
| CCGATGA | 470 | 0.0 | 41.644592 | 17 |
| CGATGAC | 470 | 0.0 | 41.644592 | 18 |
| CGGGGAA | 360 | 0.0 | 41.245697 | 15 |
| TGACGTC | 475 | 0.0 | 41.20623 | 21 |
| ATGCCGT | 295 | 0.0 | 41.182148 | 44 |
| CGGTATT | 365 | 0.0 | 40.68069 | 24 |
| TCGGTAT | 365 | 0.0 | 40.68069 | 23 |
| GGCGGTC | 360 | 0.0 | 40.62076 | 35 |
| TTCGGTA | 370 | 0.0 | 40.13095 | 22 |
| GCGGTCT | 365 | 0.0 | 40.064316 | 36 |