FastQCFastQC Report
Mon 6 Jun 2016
ERR1391351.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391351.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences914786
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC708.1854523E-1032.12466444
TCGGAAG950.030.77204720
ATCGGAA950.030.77204719
CTCGTAT751.713488E-929.98301742
TATCTCG751.713488E-929.98301739
TCTCGTA751.713488E-929.98301741
TCGTATG751.713488E-929.98301743
CGTTCAG856.513801E-926.4570532
GACCGTT901.196895E-824.98721529
GATCGGA1201.6370905E-1124.36120418
CCGTTCA1052.3792381E-923.55937631
AGATCGG1252.910383E-1123.38675517
AGACCGT1056.137452E-821.41761428
ATCTCGT1056.14109E-821.41644340
ACCGTTC1101.0032636E-720.44408430
GCGCTCC1009.095311E-720.2396458
CGGCTAA1703.6379788E-1219.84170317
CGGAAGA1555.3842086E-1018.86028721
AGCGCTC1102.2660079E-618.3996757
CCGGCTA1751.4006218E-1017.9898116