Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378522.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 349715 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATCATATCTCGTATGCC | 1708 | 0.4883976952661453 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGATCGG | 20 | 7.027318E-4 | 44.999 | 17 |
| ACCGCAT | 260 | 0.0 | 41.537537 | 30 |
| CGTATGC | 255 | 0.0 | 41.469666 | 44 |
| CGCATCA | 255 | 0.0 | 41.469666 | 32 |
| TATCTCG | 255 | 0.0 | 41.469666 | 39 |
| CTCGTAT | 260 | 0.0 | 40.672173 | 42 |
| TCTCGTA | 260 | 0.0 | 40.672173 | 41 |
| TCGTATG | 260 | 0.0 | 40.672173 | 43 |
| CCGCATC | 260 | 0.0 | 40.672173 | 31 |
| ATCTCGT | 270 | 0.0 | 39.99911 | 40 |
| AGACCGC | 270 | 0.0 | 39.1658 | 28 |
| GACCGCA | 265 | 0.0 | 39.055733 | 29 |
| AGCGGTT | 275 | 0.0 | 38.45919 | 7 |
| AGAGCGG | 275 | 0.0 | 38.45919 | 5 |
| GCGGTTC | 280 | 0.0 | 37.77242 | 8 |
| GAGCGGT | 280 | 0.0 | 37.77242 | 6 |
| CGGTTCA | 280 | 0.0 | 37.767017 | 9 |
| GAGACCG | 270 | 0.0 | 37.49917 | 27 |
| CCGAGAC | 265 | 0.0 | 37.35766 | 25 |
| CGAGACC | 265 | 0.0 | 37.35766 | 26 |