Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378560.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 244953 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTAGCAATCTCGTATGCC | 3672 | 1.499063085571518 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 267 | 0.10900050213714467 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGCTCT | 20 | 7.023351E-4 | 44.99877 | 14 |
| CTCGTAT | 385 | 0.0 | 44.414375 | 42 |
| TCTCGTA | 385 | 0.0 | 44.414375 | 41 |
| TCGTATG | 385 | 0.0 | 44.414375 | 43 |
| ACCGGTA | 395 | 0.0 | 43.28996 | 30 |
| CGTATGC | 395 | 0.0 | 43.28996 | 44 |
| CCGGTAG | 395 | 0.0 | 43.28996 | 31 |
| CGGTAGC | 395 | 0.0 | 43.28996 | 32 |
| GACCGGT | 400 | 0.0 | 42.748837 | 29 |
| AGACCGG | 405 | 0.0 | 42.221073 | 28 |
| CGAGACC | 400 | 0.0 | 42.18635 | 26 |
| GAGACCG | 405 | 0.0 | 41.66553 | 27 |
| CCGAGAC | 405 | 0.0 | 41.66553 | 25 |
| AATCTCG | 405 | 0.0 | 41.66553 | 39 |
| GTATGCC | 420 | 0.0 | 40.713177 | 45 |
| ATCTCGT | 415 | 0.0 | 40.66154 | 40 |
| GGTAGCA | 430 | 0.0 | 39.76636 | 33 |
| AGCGGTT | 435 | 0.0 | 39.309273 | 7 |
| AATGCCG | 435 | 0.0 | 39.309273 | 21 |
| GAGCGGT | 440 | 0.0 | 38.870514 | 6 |