Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378520.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 348349 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGTAATCTCGTATGCC | 1971 | 0.5658118725760659 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GAGCGGT | 245 | 0.0 | 42.25002 | 6 |
| AGAGCGG | 250 | 0.0 | 41.405018 | 5 |
| CCGATAG | 250 | 0.0 | 41.399075 | 31 |
| GACCGAT | 250 | 0.0 | 41.399075 | 29 |
| CGATAGT | 250 | 0.0 | 41.399075 | 32 |
| GCGGTTC | 245 | 0.0 | 41.33154 | 8 |
| AAGAGCG | 260 | 0.0 | 40.67801 | 4 |
| GCCGAGA | 260 | 0.0 | 40.67217 | 24 |
| TGCCGAG | 260 | 0.0 | 40.67217 | 23 |
| AGCGGTT | 255 | 0.0 | 40.593155 | 7 |
| ACCGATA | 255 | 0.0 | 40.587326 | 30 |
| TCTCGTA | 255 | 0.0 | 40.587326 | 41 |
| AGACCGA | 255 | 0.0 | 40.587326 | 28 |
| TCGTATG | 255 | 0.0 | 40.587326 | 43 |
| GAGACCG | 260 | 0.0 | 39.806805 | 27 |
| CCGAGAC | 260 | 0.0 | 39.806805 | 25 |
| CGGTTCA | 270 | 0.0 | 39.16579 | 9 |
| CTCGTAT | 265 | 0.0 | 39.05573 | 42 |
| AATCTCG | 265 | 0.0 | 39.05573 | 39 |
| ATCTCGT | 275 | 0.0 | 38.453686 | 40 |