Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378541.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 423304 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTGTAATCTCGTATGCC | 2221 | 0.5246820252111958 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGTCTG | 290 | 0.0 | 44.223675 | 31 |
| TCTCGTA | 285 | 0.0 | 44.21006 | 41 |
| CGTATGC | 295 | 0.0 | 43.47412 | 44 |
| GACCGTC | 295 | 0.0 | 43.47412 | 29 |
| ACCGTCT | 300 | 0.0 | 42.74955 | 30 |
| ATCTCGT | 295 | 0.0 | 42.71142 | 40 |
| GAGACCG | 305 | 0.0 | 42.048737 | 27 |
| AGACCGT | 305 | 0.0 | 42.048737 | 28 |
| CTCGTAT | 300 | 0.0 | 41.99956 | 42 |
| TCGTATG | 310 | 0.0 | 41.370533 | 43 |
| CGTCTGT | 315 | 0.0 | 40.71386 | 32 |
| AATCTCG | 315 | 0.0 | 40.71386 | 39 |
| GTATGCC | 335 | 0.0 | 38.954815 | 45 |
| CGAGACC | 335 | 0.0 | 38.28318 | 26 |
| AGAGCGG | 350 | 0.0 | 37.285324 | 5 |
| CCGAGAC | 345 | 0.0 | 37.173523 | 25 |
| CGGAAGA | 330 | 0.0 | 36.826492 | 1 |
| AGCGGTT | 355 | 0.0 | 36.760174 | 7 |
| GAGCGGT | 360 | 0.0 | 36.24962 | 6 |
| AAGAGCG | 355 | 0.0 | 36.12638 | 4 |