Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391237.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 542722 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3622 | 0.667376667981029 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2713 | 0.4998876035981589 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACATATCTCGTATGCCGTC | 1326 | 0.24432398170702493 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACATATCTCGTATGCC | 1168 | 0.21521147106621807 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 587 | 0.10815850472249144 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGAGCCA | 20 | 7.0310535E-4 | 44.99862 | 23 |
| TCGGTAT | 375 | 0.0 | 43.198677 | 23 |
| AGCCGAT | 330 | 0.0 | 42.94927 | 15 |
| GCCGATG | 330 | 0.0 | 42.94927 | 16 |
| ATGACGT | 335 | 0.0 | 42.312134 | 20 |
| CGATGAC | 335 | 0.0 | 42.312134 | 18 |
| TTCCTCG | 330 | 0.0 | 42.27922 | 10 |
| TATGCCG | 155 | 0.0 | 42.09548 | 43 |
| TTCGGTA | 385 | 0.0 | 42.07663 | 22 |
| CGGTATT | 385 | 0.0 | 42.07663 | 24 |
| TCGGGGA | 385 | 0.0 | 42.072754 | 14 |
| GATGACG | 340 | 0.0 | 41.689896 | 19 |
| CCGATGA | 340 | 0.0 | 41.686054 | 17 |
| TAAGCCG | 340 | 0.0 | 41.686054 | 13 |
| CGGGGAA | 390 | 0.0 | 41.53336 | 15 |
| GACGTCA | 345 | 0.0 | 41.085697 | 22 |
| TGACGTC | 345 | 0.0 | 41.085697 | 21 |
| CGTCATA | 345 | 0.0 | 41.085697 | 24 |
| GCGGTCT | 395 | 0.0 | 41.007618 | 36 |
| CGGTCTC | 395 | 0.0 | 41.007618 | 37 |