Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378566.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 285761 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACGAGTATCTCGTATGCC | 2134 | 0.7467779018130536 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 175 | 0.0 | 43.719044 | 44 |
| CGACGAG | 175 | 0.0 | 43.711395 | 32 |
| ACCGACG | 175 | 0.0 | 43.711395 | 30 |
| CCGACGA | 175 | 0.0 | 43.711395 | 31 |
| CTCGTAT | 180 | 0.0 | 42.497192 | 42 |
| CGAGTAT | 180 | 0.0 | 42.497192 | 35 |
| GACGAGT | 180 | 0.0 | 42.497192 | 33 |
| GACCGAC | 175 | 0.0 | 42.425766 | 29 |
| GAGACCG | 175 | 0.0 | 42.425766 | 27 |
| TCGTATG | 190 | 0.0 | 41.444626 | 43 |
| TCTCGTA | 185 | 0.0 | 41.348618 | 41 |
| ACGAGTA | 185 | 0.0 | 41.348618 | 34 |
| TATCTCG | 190 | 0.0 | 40.260494 | 39 |
| GTATGCC | 195 | 0.0 | 39.235043 | 45 |
| AGACCGA | 190 | 0.0 | 39.076363 | 28 |
| CGAGACC | 195 | 0.0 | 38.074406 | 26 |
| AAGAGCG | 210 | 0.0 | 37.51065 | 4 |
| GAGCGGT | 205 | 0.0 | 37.327667 | 6 |
| AGAGCGG | 205 | 0.0 | 37.327667 | 5 |
| GCGGTTC | 210 | 0.0 | 36.43892 | 8 |