Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378362.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 694569 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4315 | 0.6212485728559726 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTATTCATCTCGTATGCCGTC | 3096 | 0.4457440513469504 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTATTCATCTCGTATGCC | 2465 | 0.3548963457914188 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 385 | 0.0 | 40.32003 | 45 |
| ATGCCGT | 395 | 0.0 | 39.299274 | 44 |
| TATGCCG | 410 | 0.0 | 37.86149 | 43 |
| AGATCGG | 590 | 0.0 | 34.31808 | 25 |
| GATCGGA | 595 | 0.0 | 34.029694 | 26 |
| ATCGGAA | 595 | 0.0 | 33.651585 | 27 |
| TCGGAAG | 625 | 0.0 | 33.116184 | 28 |
| CCGAGAT | 635 | 0.0 | 31.88609 | 22 |
| CGAGATC | 650 | 0.0 | 31.150257 | 23 |
| GAGATCG | 660 | 0.0 | 31.019154 | 24 |
| AATGCCG | 1325 | 0.0 | 27.845848 | 18 |
| ATGCCGA | 1325 | 0.0 | 27.845848 | 19 |
| TGCCGAG | 1345 | 0.0 | 27.431784 | 20 |
| GCCGAGA | 1325 | 0.0 | 27.336473 | 21 |
| GAATGCC | 1400 | 0.0 | 26.354107 | 17 |
| GGAATGC | 1415 | 0.0 | 26.074736 | 16 |
| GACCGGT | 630 | 0.0 | 25.711325 | 26 |
| CCGGTAT | 630 | 0.0 | 25.711325 | 28 |
| ACCGGTA | 640 | 0.0 | 25.661106 | 27 |
| CTCGTAT | 635 | 0.0 | 25.154581 | 39 |