FastQCFastQC Report
Mon 6 Jun 2016
ERR1391381.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391381.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1050474
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACCGCG356.2703693E-638.5511478
ACCGCGC301.1440297E-437.4767159
CTTGCGC300.005160310329.9842288
GATCGGA1058.54925E-1125.6983218
GACCGTA450.001230249824.98685844
AGATCGG1152.6739144E-1023.46368417
CGGTTCA1204.5474735E-1022.4881729
AACGGTT500.002272039422.487136
ATCGGAA1204.5474735E-1022.48602919
CCGAGAC1358.367351E-1121.65527545
AGCGGTT1301.2350938E-920.75831227
GGGCGCC654.255695E-420.75633414
CCGCGCC654.255695E-420.75633410
TCGGAAG1351.9790605E-919.98758120
GAGCGGT1403.106834E-919.27557426
AGAGCGG1403.108653E-919.27465825
CGTGAGC1655.638867E-1119.161141
CCCCGAA600.00652992518.74014330
ACGCCCG750.001114773117.98882312
GCGGTTC1551.0968506E-817.41019628