Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378193.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 531273 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATTAGATCTCGTATGCC | 1371 | 0.2580594157805874 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACACGA | 20 | 7.032464E-4 | 44.996613 | 31 |
| CTCGTAT | 135 | 0.0 | 39.996986 | 42 |
| AGACCGA | 135 | 0.0 | 39.996986 | 28 |
| GAGACCG | 135 | 0.0 | 39.993225 | 27 |
| ATCTCGT | 145 | 0.0 | 38.793835 | 40 |
| GCGGTTC | 140 | 0.0 | 38.56489 | 8 |
| TCGTATG | 140 | 0.0 | 38.56489 | 43 |
| CGTATGC | 150 | 0.0 | 35.997288 | 44 |
| GACCGAA | 150 | 0.0 | 35.997288 | 29 |
| TCTCGTA | 150 | 0.0 | 35.997288 | 41 |
| CCGAATT | 150 | 0.0 | 35.997288 | 31 |
| AGCGGTT | 150 | 0.0 | 35.9939 | 7 |
| CCGAGAC | 165 | 0.0 | 34.088345 | 25 |
| GAGCGGT | 160 | 0.0 | 33.76653 | 6 |
| ACCGAAT | 160 | 0.0 | 33.74746 | 30 |
| AATGCCG | 160 | 0.0 | 33.74746 | 21 |
| CGGTTCA | 160 | 0.0 | 33.74428 | 9 |
| AGAGCGG | 165 | 0.0 | 32.7433 | 5 |
| CGAATTA | 165 | 0.0 | 32.724808 | 32 |
| AAGAGCG | 170 | 0.0 | 31.780262 | 4 |