Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378107.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 792300 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2102 | 0.2653035466363751 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGGCGATCTCGTATGCCGTC | 1377 | 0.17379780386217342 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1329 | 0.16773949261643317 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGGCGATCTCGTATGCC | 795 | 0.10034078000757289 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 215 | 0.0 | 41.853188 | 15 |
| CCGATGA | 215 | 0.0 | 41.853188 | 17 |
| CGATGAC | 215 | 0.0 | 41.853188 | 18 |
| TAAGCCG | 215 | 0.0 | 41.853188 | 13 |
| CGTCATA | 220 | 0.0 | 40.901974 | 24 |
| GCCGATG | 225 | 0.0 | 39.993046 | 16 |
| AAGCCGA | 225 | 0.0 | 39.993046 | 14 |
| TATGCCG | 220 | 0.0 | 39.879425 | 43 |
| GGCGGTC | 215 | 0.0 | 39.76053 | 35 |
| GACGTCA | 235 | 0.0 | 39.248493 | 22 |
| ATGCCGT | 225 | 0.0 | 38.993217 | 44 |
| GCGGTCT | 220 | 0.0 | 38.856876 | 36 |
| ATTCGGT | 220 | 0.0 | 38.856876 | 21 |
| AATTCGG | 220 | 0.0 | 38.856876 | 20 |
| TGACGTC | 235 | 0.0 | 38.29121 | 21 |
| CGGTATT | 230 | 0.0 | 38.14554 | 24 |
| TCGGTAT | 225 | 0.0 | 37.993393 | 23 |
| ACGTCAT | 240 | 0.0 | 37.493477 | 23 |
| GATGACG | 240 | 0.0 | 37.493477 | 19 |
| TGCCGTC | 235 | 0.0 | 37.345715 | 45 |