Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391247.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 545305 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3274 | 0.6003979424358845 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2382 | 0.43681976141792206 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTATCAATCTCGTATGCC | 1203 | 0.22061048404104128 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTATCAATCTCGTATGCCGTC | 1165 | 0.21364190682278728 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 575 | 0.1054455763288435 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCATA | 385 | 0.0 | 44.40907 | 24 |
| CCGATGA | 375 | 0.0 | 44.39349 | 17 |
| AGCCGAT | 385 | 0.0 | 43.82474 | 15 |
| GATGACG | 380 | 0.0 | 43.80936 | 19 |
| ACGTCAT | 390 | 0.0 | 43.262882 | 23 |
| GACGTCA | 385 | 0.0 | 43.24041 | 22 |
| TGACGTC | 385 | 0.0 | 43.24041 | 21 |
| ATGACGT | 385 | 0.0 | 43.24041 | 20 |
| CGATGAC | 385 | 0.0 | 43.24041 | 18 |
| TAAGCCG | 400 | 0.0 | 42.181313 | 13 |
| GCCGATG | 405 | 0.0 | 41.105083 | 16 |
| TGCCGTC | 155 | 0.0 | 40.646652 | 45 |
| TATGCCG | 155 | 0.0 | 40.6392 | 43 |
| AAGCCGA | 430 | 0.0 | 39.76161 | 14 |
| TTCGGTA | 230 | 0.0 | 39.12469 | 22 |
| CGGTATT | 230 | 0.0 | 39.12469 | 24 |
| TCGGTAT | 230 | 0.0 | 39.12469 | 23 |
| ATGCCGT | 170 | 0.0 | 38.37672 | 44 |
| GGCGGTC | 235 | 0.0 | 38.29225 | 35 |
| TCGGGGA | 245 | 0.0 | 37.647537 | 14 |