Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378549.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 412189 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTGAGATCTCGTATGCC | 2177 | 0.5281557732011286 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 245 | 0.0 | 42.2449 | 44 |
| TCTCGTA | 240 | 0.0 | 42.187496 | 41 |
| ATCTCGT | 250 | 0.0 | 40.499996 | 40 |
| TCGTATG | 260 | 0.0 | 39.807693 | 43 |
| CTCGTAT | 255 | 0.0 | 39.705883 | 42 |
| AGACCGT | 255 | 0.0 | 39.705883 | 28 |
| GTATGCC | 270 | 0.0 | 39.166664 | 45 |
| GACCGTG | 265 | 0.0 | 39.056602 | 29 |
| CCGTGTG | 270 | 0.0 | 38.333332 | 31 |
| GAGCGGT | 275 | 0.0 | 37.636364 | 6 |
| ACCGTGT | 275 | 0.0 | 37.636364 | 30 |
| GCGGTTC | 270 | 0.0 | 37.5 | 8 |
| AGCGGTT | 280 | 0.0 | 36.964283 | 7 |
| CGTGTGA | 280 | 0.0 | 36.964283 | 32 |
| GATCTCG | 280 | 0.0 | 36.964283 | 39 |
| CGGTTCA | 275 | 0.0 | 36.818184 | 9 |
| GAGACCG | 270 | 0.0 | 36.666664 | 27 |
| CGGAAGA | 275 | 0.0 | 35.18182 | 1 |
| AATGCCG | 290 | 0.0 | 34.913795 | 21 |
| CCGAGAC | 285 | 0.0 | 34.736843 | 25 |