Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378487.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 891327 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAGAATCTCGTATGCCGTC | 4145 | 0.46503696174355763 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAGAATCTCGTATGCC | 2957 | 0.3317525442402171 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1603 | 0.17984420981300914 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 490 | 0.0 | 39.035038 | 43 |
| ATGCCGT | 505 | 0.0 | 37.875584 | 44 |
| TGCCGTC | 550 | 0.0 | 35.18581 | 45 |
| ATCGGAA | 350 | 0.0 | 25.070055 | 27 |
| GATCGGA | 360 | 0.0 | 24.372295 | 26 |
| ACCGTCG | 815 | 0.0 | 24.017088 | 27 |
| CGTATGC | 800 | 0.0 | 23.906279 | 41 |
| AGACCGT | 800 | 0.0 | 23.903597 | 25 |
| CCGTCGA | 825 | 0.0 | 23.725971 | 28 |
| TCGGAAG | 370 | 0.0 | 23.714914 | 28 |
| AGATCGG | 380 | 0.0 | 23.681583 | 25 |
| CTCGTAT | 815 | 0.0 | 23.463654 | 39 |
| GACCGTC | 815 | 0.0 | 23.463654 | 26 |
| TCTCGTA | 815 | 0.0 | 23.463654 | 38 |
| CGTCGAG | 835 | 0.0 | 23.441828 | 29 |
| AATGCCG | 1220 | 0.0 | 23.235126 | 18 |
| TCGTATG | 840 | 0.0 | 22.766607 | 40 |
| ATCTCGT | 840 | 0.0 | 22.76533 | 37 |
| CGAGAAT | 850 | 0.0 | 22.763456 | 32 |
| AATCTCG | 850 | 0.0 | 22.497503 | 36 |