FastQCFastQC Report
Mon 6 Jun 2016
ERR1391380.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391380.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences928475
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACACA300.00505328530.112651
ATCTTCG901.8132306E-417.5647645
ACTAGAC2800.015.2599819
TCGTATA900.003768800314.9906489
TTCGTAT1108.623259E-414.3100258
AACGGGA1352.665117E-413.3250212
CGGGATT1250.00226152112.59214514
ACGGGAT1454.8725036E-412.40605213
CGTTGGA1751.7428285E-411.6142515
CTTCGTA1400.005277214611.2435917
GGCGGAG1400.005277214611.24359131
TCGTTGG1852.9189634E-410.9864544
AGGCGGA1750.002348644410.27985630
CTAGACA4651.8189894E-1110.15604920
GCCACCA6350.09.9579756
ACCATGC4355.7298166E-109.8214599
AGCCACC4601.4006218E-109.8188115
AAACGGG2109.761228E-49.63684511
CGTGAGC1900.0044764159.5092581
TTCGTTG2150.00116371469.4534613