Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378482.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 524713 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTAGCAATCTCGTATGCCGTC | 3393 | 0.6466392103873927 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTAGCAATCTCGTATGCC | 3343 | 0.6371101916666826 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1822 | 0.34723744218267893 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 795 | 0.15151139765929186 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTGGAC | 20 | 7.032125E-4 | 44.996952 | 25 |
| TATGCCG | 420 | 0.0 | 36.968826 | 43 |
| TGCCGTC | 455 | 0.0 | 34.12507 | 45 |
| ATGCCGT | 470 | 0.0 | 33.035973 | 44 |
| CCACCGT | 50 | 0.0022613672 | 22.502764 | 7 |
| CCGGTAG | 735 | 0.0 | 21.42712 | 28 |
| ATCGGAA | 315 | 0.0 | 21.42712 | 27 |
| CGTGAGC | 85 | 4.9934515E-6 | 21.19119 | 1 |
| ACCGGTA | 750 | 0.0 | 20.998577 | 27 |
| GACCGGT | 750 | 0.0 | 20.998577 | 26 |
| CGGTAGC | 750 | 0.0 | 20.998577 | 29 |
| TCGGAAG | 365 | 0.0 | 20.957483 | 28 |
| CGGAAGA | 700 | 0.0 | 20.58573 | 1 |
| TCTCGTA | 755 | 0.0 | 20.56152 | 38 |
| CGTATGC | 770 | 0.0 | 20.45316 | 41 |
| GATCGGA | 330 | 0.0 | 20.45316 | 26 |
| CGAGGTC | 55 | 0.0039352756 | 20.45316 | 23 |
| GTAGCAA | 775 | 0.0 | 20.321203 | 31 |
| CTCGTAT | 765 | 0.0 | 20.292742 | 39 |
| TCGTATG | 765 | 0.0 | 20.292742 | 40 |