Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391180.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1340994 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4009 | 0.29895734059958506 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2678 | 0.19970260866193287 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 385 | 0.0 | 42.661667 | 13 |
| GCCGATG | 400 | 0.0 | 41.624348 | 16 |
| TGACGTC | 400 | 0.0 | 40.499363 | 21 |
| CCGATGA | 420 | 0.0 | 40.17794 | 17 |
| ATGACGT | 420 | 0.0 | 39.10653 | 20 |
| AGCCGAT | 430 | 0.0 | 38.720318 | 15 |
| AAGCCGA | 430 | 0.0 | 38.720318 | 14 |
| GACGTCA | 420 | 0.0 | 38.570824 | 22 |
| CGTCATA | 420 | 0.0 | 38.570824 | 24 |
| TCGGTAT | 450 | 0.0 | 37.9994 | 23 |
| TTCCTCG | 375 | 0.0 | 37.799404 | 10 |
| CGATGAC | 435 | 0.0 | 37.75803 | 18 |
| GCGGTCT | 455 | 0.0 | 37.58183 | 36 |
| ATTCGGT | 455 | 0.0 | 37.58183 | 21 |
| ACGTCAT | 435 | 0.0 | 37.240795 | 23 |
| TCGGGGA | 460 | 0.0 | 37.173325 | 14 |
| GGCGGTC | 460 | 0.0 | 37.173325 | 35 |
| TCCTCGG | 390 | 0.0 | 36.922497 | 11 |
| GATTCGG | 80 | 0.0 | 36.561928 | 11 |
| GATGACG | 450 | 0.0 | 36.499424 | 19 |