Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378228.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 691030 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4422 | 0.6399143307815869 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATCGAATCTCGTATGCCGTC | 2785 | 0.4030215764872726 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATCGAATCTCGTATGCC | 2322 | 0.3360201438432485 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 370 | 0.0 | 38.917233 | 43 |
| ATGCCGT | 385 | 0.0 | 37.400974 | 44 |
| TGCCGTC | 385 | 0.0 | 37.400974 | 45 |
| AGATCGG | 605 | 0.0 | 34.21339 | 25 |
| GATCGGA | 610 | 0.0 | 33.932957 | 26 |
| ATCGGAA | 620 | 0.0 | 33.385647 | 27 |
| TCGGAAG | 660 | 0.0 | 32.725853 | 28 |
| CCGAGAT | 695 | 0.0 | 30.106607 | 22 |
| GAGATCG | 695 | 0.0 | 29.78288 | 24 |
| CGAGATC | 705 | 0.0 | 29.679564 | 23 |
| AATGCCG | 1265 | 0.0 | 28.990835 | 18 |
| ACGGGTT | 55 | 4.163183E-6 | 28.63512 | 13 |
| ATGCCGA | 1285 | 0.0 | 28.539618 | 19 |
| TGCCGAG | 1300 | 0.0 | 28.210312 | 20 |
| GCCGAGA | 1300 | 0.0 | 27.691103 | 21 |
| GAATGCC | 1410 | 0.0 | 26.328644 | 17 |
| ACCGGAT | 570 | 0.0 | 25.262062 | 27 |
| CCGGATC | 570 | 0.0 | 25.262062 | 28 |
| CGAATCT | 570 | 0.0 | 25.262062 | 34 |
| TCGAATC | 575 | 0.0 | 25.04239 | 33 |