Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391302.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 732028 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3944 | 0.5387772052435152 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2814 | 0.38441152524220384 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAACAATATCTCGTATGCCGTC | 2462 | 0.33632593288781304 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACAATATCTCGTATGCC | 1995 | 0.27253055894036843 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1218 | 0.16638707808990913 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCATA | 405 | 0.0 | 41.659645 | 24 |
| AGCCGAT | 410 | 0.0 | 41.151604 | 15 |
| GCCGATG | 410 | 0.0 | 40.602917 | 16 |
| GGCGGTC | 355 | 0.0 | 40.559315 | 35 |
| ACGTCAT | 420 | 0.0 | 40.171803 | 23 |
| GCGGTCT | 360 | 0.0 | 39.99599 | 36 |
| TCGGGGA | 360 | 0.0 | 39.99326 | 14 |
| AATTCGG | 360 | 0.0 | 39.99326 | 20 |
| CGGTATT | 360 | 0.0 | 39.99326 | 24 |
| TCGGTAT | 360 | 0.0 | 39.99326 | 23 |
| TAAGCCG | 425 | 0.0 | 39.699192 | 13 |
| GATGACG | 420 | 0.0 | 39.636177 | 19 |
| TATGCCG | 325 | 0.0 | 39.45489 | 43 |
| AGGCGGT | 365 | 0.0 | 39.4481 | 34 |
| TTCGGTA | 365 | 0.0 | 39.445408 | 22 |
| GACGTCA | 425 | 0.0 | 39.169872 | 22 |
| TGACGTC | 425 | 0.0 | 39.169872 | 21 |
| ATGACGT | 425 | 0.0 | 39.169872 | 20 |
| CCGATGA | 430 | 0.0 | 38.71441 | 17 |
| CGATGAC | 430 | 0.0 | 38.71441 | 18 |