Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391313.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 418967 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2688 | 0.6415779763083965 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCCGTC | 2144 | 0.5117348144364592 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCC | 2049 | 0.4890599975654407 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1981 | 0.47282960233144855 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 908 | 0.21672351283036612 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCGTCGT | 20 | 7.008329E-4 | 45.0258 | 45 |
| ATCGCGG | 20 | 7.008329E-4 | 45.0258 | 10 |
| AGCGTCG | 20 | 7.0331094E-4 | 44.993553 | 44 |
| CGTCATA | 300 | 0.0 | 44.24366 | 24 |
| CCGATGA | 305 | 0.0 | 43.518356 | 17 |
| GACGTCA | 305 | 0.0 | 43.518356 | 22 |
| TATGCCG | 215 | 0.0 | 42.900833 | 43 |
| GCCGATG | 315 | 0.0 | 42.851 | 16 |
| ATGACGT | 310 | 0.0 | 42.81645 | 20 |
| TGACGTC | 315 | 0.0 | 42.136818 | 21 |
| GATGACG | 315 | 0.0 | 42.136818 | 19 |
| TAAGCCG | 315 | 0.0 | 42.136818 | 13 |
| AGCCGAT | 325 | 0.0 | 41.532513 | 15 |
| ACGTCAT | 320 | 0.0 | 41.47843 | 23 |
| TCGGGGA | 225 | 0.0 | 40.994125 | 14 |
| ATTCGGT | 225 | 0.0 | 40.994125 | 21 |
| CGATGAC | 325 | 0.0 | 40.8403 | 18 |
| AAGCCGA | 330 | 0.0 | 40.221508 | 14 |
| TGCCGTC | 230 | 0.0 | 40.13169 | 45 |
| TTCGGTA | 230 | 0.0 | 40.10295 | 22 |