FastQCFastQC Report
Mon 6 Jun 2016
ERR1378527.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378527.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences291900
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATACTATCTCGTATGCC14040.4809866392600205Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT2050.043.90126842
TATCTCG2050.043.90126839
AGACCGC2000.043.8738328
CGTATGC2100.042.85600344
CGCATAC2100.042.85600332
TCGTATG2100.042.85600343
CCGCATA2100.042.85600331
GAGACCG2050.042.80373427
ATCTCGT2150.041.8593540
GACCGCA2100.041.78460329
ACCGCAT2200.040.90830
TCTCGTA2200.040.90841
GTATGCC2300.039.1293945
CGAGACC2350.037.33942826
GCATACT2500.036.89901733
AGAGCGG2500.036.005215
GCGGTTC2550.035.2931758
CGGTTCA2550.035.2931759
AGCGGTT2550.035.2931757
GAGCGGT2550.035.2931756