Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391162.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1063738 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2769 | 0.26030845941387826 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1921 | 0.1805895812690719 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1773 | 0.1666763808381387 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCCGTC | 1365 | 0.12832107154205266 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GTCGAGT | 20 | 7.034134E-4 | 44.998592 | 31 |
| CGATGAC | 260 | 0.0 | 40.671803 | 18 |
| GGCGGTC | 240 | 0.0 | 39.373764 | 35 |
| AGGCGGT | 245 | 0.0 | 38.57022 | 34 |
| CGGTATT | 245 | 0.0 | 38.57022 | 24 |
| CCGATGA | 275 | 0.0 | 38.453342 | 17 |
| AATTCGG | 245 | 0.0 | 37.651882 | 20 |
| ATTCGGT | 250 | 0.0 | 36.89884 | 21 |
| TTCGGTA | 250 | 0.0 | 36.89884 | 22 |
| GAATTCG | 250 | 0.0 | 36.89884 | 19 |
| TCGGTAT | 250 | 0.0 | 36.89884 | 23 |
| AGCCGAT | 290 | 0.0 | 36.464375 | 15 |
| TGACGTC | 290 | 0.0 | 36.464375 | 21 |
| GCCGATG | 290 | 0.0 | 36.464375 | 16 |
| CGTCATA | 290 | 0.0 | 36.464375 | 24 |
| GACGTCA | 295 | 0.0 | 35.846333 | 22 |
| ACGTCAT | 295 | 0.0 | 35.846333 | 23 |
| TAAGCCG | 295 | 0.0 | 35.846333 | 13 |
| TGCCGTC | 145 | 0.0 | 35.688538 | 45 |
| GATGACG | 310 | 0.0 | 34.837616 | 19 |