Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391257.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 440082 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4646 | 1.0557123445176126 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3288 | 0.7471334887589132 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTCTAATCTCGTATGCCGTC | 939 | 0.21336932662549252 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTCTAATCTCGTATGCC | 794 | 0.18042092155552827 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 645 | 0.14656359496639262 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 604 | 0.1372471493948855 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCCGATG | 440 | 0.0 | 44.481445 | 16 |
| AGCCGAT | 445 | 0.0 | 43.981655 | 15 |
| CCGATGA | 445 | 0.0 | 43.981655 | 17 |
| TGACGTC | 450 | 0.0 | 43.49297 | 21 |
| TAAGCCG | 450 | 0.0 | 43.49297 | 13 |
| ACGTCAT | 455 | 0.0 | 43.015022 | 23 |
| CGATGAC | 455 | 0.0 | 43.015022 | 18 |
| GACGTCA | 460 | 0.0 | 42.547474 | 22 |
| AAGCCGA | 460 | 0.0 | 42.547474 | 14 |
| TATGCCG | 80 | 0.0 | 42.180683 | 43 |
| ATGACGT | 465 | 0.0 | 42.089973 | 20 |
| CGTCATA | 465 | 0.0 | 42.089973 | 24 |
| AGATCGG | 125 | 0.0 | 41.39331 | 25 |
| GATGACG | 475 | 0.0 | 41.203865 | 19 |
| CGGTATT | 465 | 0.0 | 41.122387 | 24 |
| GACCCTT | 485 | 0.0 | 40.822784 | 39 |
| GCGGTCT | 465 | 0.0 | 40.64321 | 36 |
| GGCGGTC | 470 | 0.0 | 40.210835 | 35 |
| TTCGGTA | 470 | 0.0 | 40.20627 | 22 |
| TCCTCGG | 365 | 0.0 | 40.089348 | 11 |