FastQCFastQC Report
Mon 6 Jun 2016
ERR1391183.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391183.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1005952
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA33190.3299362196208169No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA21340.21213735844254994No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT12140.12068170250668024Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCCGAT3750.043.79864515
GCCGATG3800.043.22234716
TATGCCG750.041.998743
AATTCGG2900.041.1194220
GGCGGTC2750.040.90782535
AAGCCGA4050.040.554314
TAAGCCG4050.040.554313
GATGACG4100.040.0597419
GAATTCG3000.039.74876819
TCGGTAT3000.039.74876823
CGTCATA4150.039.57708724
ATGACGT4200.039.10593420
CGATGAC4200.039.10593418
CGGTATT3050.039.09715324
GACGTCA4350.038.79190422
CCGATGA4250.038.64586617
ACGTCAT4300.038.1964923
TTCGGTA3200.037.9675822
TGACGTC4400.037.83973721
GCGGTCT3150.036.42744436