Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378469.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 798925 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCAGATATCTCGTATGCCGTC | 3644 | 0.45611290171167507 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCAGATATCTCGTATGCC | 2587 | 0.32381011984854646 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1852 | 0.23181149669868886 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 475 | 0.0 | 39.797226 | 43 |
| ATGCCGT | 490 | 0.0 | 38.11967 | 44 |
| TGCCGTC | 505 | 0.0 | 37.433033 | 45 |
| TCTCGTA | 685 | 0.0 | 27.591434 | 38 |
| CGTATGC | 695 | 0.0 | 27.196136 | 41 |
| CTCGTAT | 700 | 0.0 | 27.000187 | 39 |
| TCGTATG | 705 | 0.0 | 26.808697 | 40 |
| AGACCGG | 710 | 0.0 | 26.618237 | 25 |
| GTATGCC | 720 | 0.0 | 26.564348 | 42 |
| ACCGGCA | 715 | 0.0 | 26.432095 | 27 |
| TATCTCG | 730 | 0.0 | 25.890593 | 36 |
| GAGACCG | 740 | 0.0 | 25.53912 | 24 |
| GATCGGA | 345 | 0.0 | 25.433367 | 26 |
| ATCGGAA | 345 | 0.0 | 25.433367 | 27 |
| AATGCCG | 1130 | 0.0 | 25.28462 | 18 |
| ATCTCGT | 750 | 0.0 | 25.200176 | 37 |
| CCGGCAG | 750 | 0.0 | 25.198599 | 28 |
| CGGCAGA | 770 | 0.0 | 25.128471 | 29 |
| TCGGAAG | 360 | 0.0 | 24.99861 | 28 |
| ATGCCGA | 1155 | 0.0 | 24.34777 | 19 |