Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391272.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 703814 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4372 | 0.621186847661456 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2942 | 0.41800816693046744 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGACAATCTCGTATGCCGTC | 1147 | 0.1629691935653454 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGACAATCTCGTATGCC | 894 | 0.1270221962052474 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TTCGGTA | 465 | 0.0 | 44.507133 | 22 |
| CGGTATT | 470 | 0.0 | 44.033653 | 24 |
| TCGGGGA | 480 | 0.0 | 43.116287 | 14 |
| ATTCGGT | 480 | 0.0 | 43.116287 | 21 |
| TCGGTAT | 480 | 0.0 | 43.116287 | 23 |
| TATGCCG | 115 | 0.0 | 43.03478 | 43 |
| GCGGTCT | 485 | 0.0 | 42.67179 | 36 |
| GCCGATG | 520 | 0.0 | 42.395275 | 16 |
| AGCCGAT | 515 | 0.0 | 42.37008 | 15 |
| AGGCGGT | 490 | 0.0 | 42.236362 | 34 |
| GGCGGTC | 490 | 0.0 | 42.236362 | 35 |
| GAATTCG | 490 | 0.0 | 42.236362 | 19 |
| CGATGAC | 520 | 0.0 | 41.962673 | 18 |
| CGTCATA | 520 | 0.0 | 41.962673 | 24 |
| AATTCGG | 495 | 0.0 | 41.80973 | 20 |
| TAAGCCG | 530 | 0.0 | 41.170925 | 13 |
| CGGTCTC | 505 | 0.0 | 40.981815 | 37 |
| AAGCCGA | 535 | 0.0 | 40.786148 | 14 |
| CCGATGA | 540 | 0.0 | 40.4085 | 17 |
| GACGTCA | 540 | 0.0 | 40.4085 | 22 |