FastQCFastQC Report
Mon 6 Jun 2016
ERR1391267.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391267.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences600372
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA41030.6834096193693243No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA28450.4738728654900628No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCCGTC9600.15990086146589116Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCC8750.14574297269026537Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATGAC3600.043.1195718
AGCCGAT3550.043.09316615
AAGCCGA3550.043.09316614
TAAGCCG3550.043.09316613
CCGATGA3700.041.95417817
GCCGATG3700.041.95417816
ATGACGT3650.041.91253320
GATGACG3700.041.3461519
GACGTCA3650.041.29617322
CGGGGAA3300.040.90394215
ACGTCAT3700.040.73811723
CGTCATA3800.040.2580924
TCCTCGG3050.039.85096711
TGACGTC3850.039.7352621
AATTCGG3400.039.70088620
CGGTATT3400.039.70088624
GGCGGTC3450.039.1255135
GAATTCG3450.039.1255119
GCGGTCT3500.038.5665736
TTCGGTA3500.038.5665722