Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378176.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 800857 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCC | 1439 | 0.17968251510569302 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGACCGG | 175 | 0.0 | 37.280903 | 28 |
| CGTATGC | 190 | 0.0 | 36.70579 | 44 |
| TCTCGTA | 190 | 0.0 | 34.337673 | 41 |
| CGGCATG | 185 | 0.0 | 34.04966 | 32 |
| CTCGTAT | 195 | 0.0 | 33.457222 | 42 |
| CCGGCAT | 190 | 0.0 | 33.153618 | 31 |
| GACCGGC | 190 | 0.0 | 33.153618 | 29 |
| ATCGGAA | 95 | 0.0 | 33.153618 | 19 |
| TCGTATG | 205 | 0.0 | 32.92258 | 43 |
| GTATGCC | 220 | 0.0 | 32.723053 | 45 |
| ACCGGCA | 195 | 0.0 | 32.303524 | 30 |
| ATCTCGT | 210 | 0.0 | 32.13871 | 40 |
| GATCGGA | 100 | 0.0 | 31.495935 | 18 |
| GAGACCG | 240 | 0.0 | 30.93351 | 27 |
| TCTAACG | 30 | 0.005149585 | 29.99613 | 27 |
| AGATCGG | 105 | 0.0 | 29.996128 | 17 |
| AGCGGTT | 255 | 0.0 | 28.231653 | 7 |
| AATCTCG | 250 | 0.0 | 27.8964 | 39 |
| GCGGTTC | 265 | 0.0 | 27.166306 | 8 |
| AGAGCGG | 270 | 0.0 | 26.684883 | 5 |