FastQCFastQC Report
Mon 6 Jun 2016
ERR1391244.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391244.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences812836
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA48320.5944618594648859No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA37550.46196280676544843No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGGTA4200.043.38514722
TAAGCCG5400.042.90904213
TCGGTAT4250.042.87473323
CGTCATA5400.042.4924524
CGGTATT4300.042.37618624
GGCGGTC4350.041.88910735
CGATGAC5500.041.7198618
AGCCGAT5450.041.6898415
GACGTCA5550.041.34400622
CCGATGA5600.040.9748617
AAGCCGA5600.040.9748614
ATTCGGT4450.040.94777721
GCCGATG5550.040.9386716
TGACGTC5650.040.6122521
ACGTCAT5650.040.6122523
ATGACGT5600.040.57314720
AGGCGGT4550.040.54224834
GAATTCG4500.040.492819
TATGCCG900.039.99289343
CCTCGGG4300.039.76037212