Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378499.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1041088 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCGTAATCTCGTATGCCGTC | 5119 | 0.49169714759943445 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCGTAATCTCGTATGCC | 4717 | 0.4530836970553882 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2169 | 0.2083397368906375 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 725 | 0.0 | 40.351288 | 43 |
| TGCCGTC | 740 | 0.0 | 39.83746 | 45 |
| ATGCCGT | 755 | 0.0 | 38.747925 | 44 |
| TTCGGTA | 30 | 0.005149054 | 29.997599 | 36 |
| GAGCGTA | 1175 | 0.0 | 24.891623 | 30 |
| CGTAATC | 1175 | 0.0 | 24.891623 | 33 |
| GCGTAAT | 1175 | 0.0 | 24.891623 | 32 |
| CGAGCGT | 1175 | 0.0 | 24.70015 | 29 |
| AGCGTAA | 1185 | 0.0 | 24.681568 | 31 |
| CTCGTAT | 1200 | 0.0 | 24.373049 | 39 |
| TCGTATG | 1210 | 0.0 | 24.357555 | 40 |
| CGTATGC | 1210 | 0.0 | 24.175102 | 41 |
| ACCGAGC | 1220 | 0.0 | 24.157904 | 27 |
| CCGAGCG | 1210 | 0.0 | 23.985683 | 28 |
| TCTCGTA | 1225 | 0.0 | 23.87564 | 38 |
| AGACCGA | 1225 | 0.0 | 23.87564 | 25 |
| GTATGCC | 1240 | 0.0 | 23.771685 | 42 |
| GACCGAG | 1235 | 0.0 | 23.682314 | 26 |
| GAGACCG | 1240 | 0.0 | 23.58682 | 24 |
| ATCTCGT | 1255 | 0.0 | 23.304907 | 37 |