Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391250.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 484111 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3635 | 0.7508608562912225 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2900 | 0.5990361714565461 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATGTATCTCGTATGCCGTC | 1031 | 0.21296768716265482 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATGTATCTCGTATGCC | 954 | 0.1970622439894983 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 578 | 0.11939410589720126 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 518 | 0.10700025407396237 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 380 | 0.0 | 43.217136 | 15 |
| GACGTCA | 380 | 0.0 | 43.217136 | 22 |
| AAGCCGA | 380 | 0.0 | 43.217136 | 14 |
| TAAGCCG | 380 | 0.0 | 43.217136 | 13 |
| CCGATGA | 385 | 0.0 | 42.655876 | 17 |
| CGATGAC | 385 | 0.0 | 42.655876 | 18 |
| GATGACG | 395 | 0.0 | 42.14551 | 19 |
| TGACGTC | 390 | 0.0 | 42.109005 | 21 |
| ATGACGT | 390 | 0.0 | 42.109005 | 20 |
| ACGTCAT | 390 | 0.0 | 42.109005 | 23 |
| GCGGTCT | 335 | 0.0 | 41.635483 | 36 |
| GGCGGTC | 335 | 0.0 | 41.635483 | 35 |
| GCCGATG | 395 | 0.0 | 41.575977 | 16 |
| CGTCATA | 390 | 0.0 | 41.53217 | 24 |
| AGGCGGT | 340 | 0.0 | 41.023197 | 34 |
| TTCGGTA | 340 | 0.0 | 41.023197 | 22 |
| TCGGTAT | 340 | 0.0 | 41.023197 | 23 |
| TCCTCGG | 310 | 0.0 | 40.668407 | 11 |
| CGGTATT | 350 | 0.0 | 40.493866 | 24 |
| AATTCGG | 340 | 0.0 | 40.361534 | 20 |