Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378121.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1009008 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1778 | 0.17621267621267622 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACTTGAATCTCGTATGCCGTC | 1679 | 0.16640105925820212 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACTTGAATCTCGTATGCC | 1582 | 0.1567876567876568 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1200 | 0.1189286903572618 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCATA | 200 | 0.0 | 40.49451 | 24 |
| GCGGTCT | 225 | 0.0 | 39.994583 | 36 |
| GGCGGTC | 225 | 0.0 | 39.994583 | 35 |
| TGACGTC | 205 | 0.0 | 39.506844 | 21 |
| GCCGATG | 205 | 0.0 | 39.506844 | 16 |
| CGATGAC | 205 | 0.0 | 39.506844 | 18 |
| TCGGTAT | 230 | 0.0 | 39.125134 | 23 |
| GACGTCA | 210 | 0.0 | 38.566204 | 22 |
| TAAGCCG | 220 | 0.0 | 37.835785 | 13 |
| CCGATGA | 215 | 0.0 | 37.669315 | 17 |
| ACGTCAT | 215 | 0.0 | 37.669315 | 23 |
| CGGTATT | 240 | 0.0 | 37.49492 | 24 |
| AGCCGAT | 225 | 0.0 | 36.99499 | 15 |
| CGGTCTC | 245 | 0.0 | 36.72972 | 37 |
| AAGCCGA | 225 | 0.0 | 35.995125 | 14 |
| TTCGGTA | 255 | 0.0 | 35.289337 | 22 |
| TATGCCG | 205 | 0.0 | 35.117195 | 43 |
| ATGCCGT | 215 | 0.0 | 34.530205 | 44 |
| GATGACG | 235 | 0.0 | 34.463417 | 19 |
| AGGCGGT | 270 | 0.0 | 34.16204 | 34 |