Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391278.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1404390 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4178 | 0.29749570988115837 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3027 | 0.21553841881528638 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTCTATCTCGTATGCCGTC | 1965 | 0.13991839873539402 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTCTATCTCGTATGCC | 1415 | 0.10075548814787916 | Illumina Paired End PCR Primer 2 (97% over 38bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCGGTCT | 340 | 0.0 | 41.68669 | 36 |
| AGCCGAT | 490 | 0.0 | 41.320614 | 15 |
| TCGGTAT | 355 | 0.0 | 40.559013 | 23 |
| AATTCGG | 350 | 0.0 | 40.495644 | 20 |
| GCCGATG | 500 | 0.0 | 40.49564 | 16 |
| GGCGGTC | 350 | 0.0 | 39.852856 | 35 |
| TTCGGTA | 365 | 0.0 | 39.44781 | 22 |
| ACGTCAT | 525 | 0.0 | 39.424328 | 23 |
| CGATGAC | 525 | 0.0 | 39.424328 | 18 |
| GACGTCA | 520 | 0.0 | 39.37076 | 22 |
| CGGTATT | 360 | 0.0 | 39.37076 | 24 |
| GAATTCG | 360 | 0.0 | 39.37076 | 19 |
| CGTCATA | 520 | 0.0 | 39.37076 | 24 |
| CCGATGA | 525 | 0.0 | 38.9958 | 17 |
| GATGACG | 525 | 0.0 | 38.9958 | 19 |
| TAAGCCG | 520 | 0.0 | 38.93673 | 13 |
| TGACGTC | 535 | 0.0 | 38.26691 | 21 |
| ATGACGT | 535 | 0.0 | 38.26691 | 20 |
| AAGCCGA | 530 | 0.0 | 38.202076 | 14 |
| TGCCGTC | 210 | 0.0 | 37.507984 | 45 |