Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391318.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 900756 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 2011 | 0.22325690864118583 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGATTAATCTCGTATGCC | 1510 | 0.16763696272908535 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 135 | 0.0 | 39.979225 | 44 |
| CTCGTAT | 135 | 0.0 | 39.979225 | 42 |
| ACCGAGA | 145 | 0.0 | 37.22204 | 30 |
| TCTCGTA | 155 | 0.0 | 34.820618 | 41 |
| ATCTCGT | 170 | 0.0 | 34.393894 | 40 |
| TCGTATG | 160 | 0.0 | 33.73247 | 43 |
| GATCGGA | 255 | 0.0 | 32.631916 | 18 |
| ATCGGAA | 255 | 0.0 | 32.631916 | 19 |
| AGATCGG | 265 | 0.0 | 31.398779 | 17 |
| CGAGATT | 175 | 0.0 | 30.841118 | 32 |
| GACCGAG | 180 | 0.0 | 29.984423 | 29 |
| AGACCGA | 180 | 0.0 | 29.984423 | 28 |
| TCGGAAG | 295 | 0.0 | 28.969608 | 20 |
| GAGACCG | 200 | 0.0 | 28.110395 | 27 |
| AATCTCG | 210 | 0.0 | 25.700932 | 39 |
| GTATGCC | 225 | 0.0 | 24.987017 | 45 |
| CCGAGAC | 355 | 0.0 | 24.071999 | 45 |
| CGAGATC | 355 | 0.0 | 24.071999 | 15 |
| GAGATCG | 360 | 0.0 | 23.112991 | 16 |
| CGGAAGA | 405 | 0.0 | 20.546022 | 21 |