Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391273.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 720148 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4396 | 0.6104300782616906 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2798 | 0.3885312463549159 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCCGTC | 1458 | 0.20245838355449158 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCC | 1143 | 0.15871737476185452 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 460 | 0.0 | 43.52918 | 13 |
| AAGCCGA | 465 | 0.0 | 43.06113 | 14 |
| CGATGAC | 465 | 0.0 | 43.06113 | 18 |
| TGACGTC | 465 | 0.0 | 42.577297 | 21 |
| CGTCATA | 465 | 0.0 | 42.577297 | 24 |
| GGCGGTC | 345 | 0.0 | 42.387966 | 35 |
| TTCGGTA | 345 | 0.0 | 42.387966 | 22 |
| GACGTCA | 470 | 0.0 | 42.124348 | 22 |
| ACGTCAT | 470 | 0.0 | 42.124348 | 23 |
| GCGGTCT | 350 | 0.0 | 41.782425 | 36 |
| AGGCGGT | 350 | 0.0 | 41.782425 | 34 |
| CGGTATT | 350 | 0.0 | 41.782425 | 24 |
| AGCCGAT | 485 | 0.0 | 41.285408 | 15 |
| CCGATGA | 485 | 0.0 | 41.285408 | 17 |
| GAATTCG | 355 | 0.0 | 41.19394 | 19 |
| GCCGATG | 490 | 0.0 | 40.864132 | 16 |
| AATTCGG | 360 | 0.0 | 40.621803 | 20 |
| CGGTCTC | 360 | 0.0 | 40.621803 | 37 |
| TCGGTAT | 360 | 0.0 | 40.621803 | 23 |
| ATGACGT | 495 | 0.0 | 40.451363 | 20 |