Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391285.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 814946 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 5564 | 0.6827446235701506 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3692 | 0.4530361520886046 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAGCATCTCGTATGCCGTC | 1655 | 0.20308094033224286 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAGCATCTCGTATGCC | 1366 | 0.16761846797211105 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 560 | 0.0 | 44.189137 | 13 |
| CGTCATA | 560 | 0.0 | 44.189137 | 24 |
| TGACGTC | 575 | 0.0 | 43.036377 | 21 |
| GCCGATG | 575 | 0.0 | 43.036377 | 16 |
| CGATGAC | 575 | 0.0 | 43.036377 | 18 |
| GACGTCA | 585 | 0.0 | 42.300713 | 22 |
| ACGTCAT | 585 | 0.0 | 42.300713 | 23 |
| CCGATGA | 590 | 0.0 | 41.94223 | 17 |
| ATGACGT | 590 | 0.0 | 41.94223 | 20 |
| AGCCGAT | 595 | 0.0 | 41.589775 | 15 |
| CGGGGAA | 525 | 0.0 | 41.56457 | 15 |
| AGGCGGT | 520 | 0.0 | 41.53161 | 34 |
| AATTCGG | 520 | 0.0 | 41.53161 | 20 |
| TATGCCG | 185 | 0.0 | 41.34453 | 43 |
| GGCGGTC | 525 | 0.0 | 41.13607 | 35 |
| GCGGTCT | 530 | 0.0 | 40.74799 | 36 |
| ATTCGGT | 530 | 0.0 | 40.74799 | 21 |
| GATGACG | 610 | 0.0 | 40.567078 | 19 |
| GAATTCG | 540 | 0.0 | 40.409996 | 19 |
| TCGGGGA | 545 | 0.0 | 40.039265 | 14 |