Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391269.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 688563 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4487 | 0.6516469807410507 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2948 | 0.4281380207766029 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATAGATCTCGTATGCCGTC | 1267 | 0.18400640173811256 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATAGATCTCGTATGCC | 991 | 0.14392292353786074 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 752 | 0.10921295509633833 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACGTCA | 460 | 0.0 | 43.039238 | 22 |
| AGCCGAT | 460 | 0.0 | 43.036114 | 15 |
| CCGATGA | 465 | 0.0 | 42.57645 | 17 |
| GCCGATG | 465 | 0.0 | 42.57645 | 16 |
| ACGTCAT | 465 | 0.0 | 42.57645 | 23 |
| TGACGTC | 470 | 0.0 | 42.123512 | 21 |
| CGTCATA | 470 | 0.0 | 42.123512 | 24 |
| TAAGCCG | 470 | 0.0 | 42.120453 | 13 |
| ATGACGT | 475 | 0.0 | 41.680103 | 20 |
| CGATGAC | 475 | 0.0 | 41.680103 | 18 |
| AAGCCGA | 480 | 0.0 | 41.242947 | 14 |
| TCGGGGA | 355 | 0.0 | 40.556442 | 14 |
| CGGGGAA | 355 | 0.0 | 40.556442 | 15 |
| TTCGGTA | 360 | 0.0 | 39.996063 | 22 |
| GAATTCG | 360 | 0.0 | 39.996063 | 19 |
| TCGGTAT | 360 | 0.0 | 39.996063 | 23 |
| GATGACG | 505 | 0.0 | 39.204063 | 19 |
| ATTCGGT | 370 | 0.0 | 38.91509 | 21 |
| AATTCGG | 370 | 0.0 | 38.91509 | 20 |
| GCGGTCT | 365 | 0.0 | 38.215416 | 36 |