Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378204.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 810931 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5387 | 0.6642981955308158 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTATCTATCTCGTATGCCGTC | 3006 | 0.3706850521191075 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTATCTATCTCGTATGCC | 2373 | 0.2926266229802536 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 410 | 0.0 | 37.320602 | 44 |
| TATGCCG | 405 | 0.0 | 37.225742 | 43 |
| TGCCGTC | 420 | 0.0 | 36.432014 | 45 |
| ACGATAA | 25 | 0.0021070412 | 35.998962 | 10 |
| GATCGGA | 715 | 0.0 | 34.299713 | 26 |
| TCGGAAG | 725 | 0.0 | 34.136948 | 28 |
| ATCGGAA | 715 | 0.0 | 33.985035 | 27 |
| AGATCGG | 730 | 0.0 | 33.903133 | 25 |
| GGACCGA | 35 | 2.8201265E-4 | 32.14193 | 7 |
| CGAGATC | 800 | 0.0 | 31.499094 | 23 |
| CCGAGAT | 835 | 0.0 | 30.178772 | 22 |
| GAGATCG | 840 | 0.0 | 29.731287 | 24 |
| AATGCCG | 1435 | 0.0 | 28.378975 | 18 |
| ATGCCGA | 1450 | 0.0 | 28.085398 | 19 |
| TGCCGAG | 1480 | 0.0 | 27.5161 | 20 |
| GAATGCC | 1565 | 0.0 | 26.16538 | 17 |
| GCCGAGA | 1570 | 0.0 | 25.795437 | 21 |
| GGAATGC | 1640 | 0.0 | 24.968794 | 16 |
| CGGTATC | 625 | 0.0 | 24.839285 | 29 |
| CGGAAGA | 1005 | 0.0 | 24.626158 | 29 |