FastQCFastQC Report
Mon 6 Jun 2016
ERR1378519.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378519.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416137
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTATAATCTCGTATGCC23090.5548653448263432Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT2800.043.39285740
TCTCGTA2800.043.39285741
ACCGAGT2900.042.67241330
CGAGTAT2850.042.63157732
AGACCGA2950.041.9491528
CGTATGC2900.041.8965544
AATCTCG2900.041.8965539
GAGACCG3000.041.2527
GACCGAG3050.040.5737729
CTCGTAT3000.040.542
TGCCGAG3150.039.28571323
CCGAGTA3100.039.19354631
TCGTATG3100.039.19354643
CCGAGAC3250.038.7692325
ATGCCGA3200.038.67187522
GTATGCC3150.038.57142645
AGCGGTT3250.038.076927
GAGCGGT3250.038.076926
GCGGTTC3300.037.58
AATGCCG3300.037.521