Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378463.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1207403 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCCGTC | 5250 | 0.43481753813763924 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCC | 3004 | 0.24879845420294633 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2744 | 0.22726463326660612 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 765 | 0.0 | 37.651875 | 44 |
| TGCCGTC | 760 | 0.0 | 37.603493 | 45 |
| TATGCCG | 780 | 0.0 | 37.5048 | 43 |
| GACCGAT | 1060 | 0.0 | 27.37991 | 26 |
| CCGATAC | 1070 | 0.0 | 27.12402 | 28 |
| CGTATGC | 1090 | 0.0 | 26.628538 | 41 |
| TCTCGTA | 1090 | 0.0 | 26.626333 | 38 |
| TCGTATG | 1090 | 0.0 | 26.626333 | 40 |
| CGATACT | 1090 | 0.0 | 26.626333 | 29 |
| ACCGATA | 1100 | 0.0 | 26.588804 | 27 |
| ATCTCGT | 1095 | 0.0 | 26.505848 | 37 |
| CTCGTAT | 1105 | 0.0 | 26.264889 | 39 |
| GTATGCC | 1115 | 0.0 | 26.031487 | 42 |
| GATCGGA | 530 | 0.0 | 25.894176 | 26 |
| ATCGGAA | 530 | 0.0 | 25.894176 | 27 |
| AGACCGA | 1125 | 0.0 | 25.797958 | 25 |
| AGATCGG | 545 | 0.0 | 25.594305 | 25 |
| GAGACCG | 1150 | 0.0 | 25.237133 | 24 |
| CATCTCG | 1175 | 0.0 | 24.892677 | 36 |
| GATACTC | 1190 | 0.0 | 24.577887 | 30 |