Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378134.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1140417 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGTAATCTCGTATGCC | 1641 | 0.143894733242314 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 150 | 0.0 | 38.99863 | 42 |
| GACCGAT | 150 | 0.0 | 38.996925 | 29 |
| CGTATGC | 160 | 0.0 | 36.56122 | 44 |
| CCGATAG | 160 | 0.0 | 36.56122 | 31 |
| ACCGATA | 165 | 0.0 | 35.451748 | 30 |
| AGACCGA | 180 | 0.0 | 34.997234 | 28 |
| GAGACCG | 195 | 0.0 | 32.30514 | 27 |
| TCGTATG | 190 | 0.0 | 31.972563 | 43 |
| TCTCGTA | 185 | 0.0 | 31.620512 | 41 |
| GCGGTTC | 205 | 0.0 | 29.63051 | 8 |
| AGCGGTT | 215 | 0.0 | 29.298729 | 7 |
| GAGCGGT | 210 | 0.0 | 28.942787 | 6 |
| CGGTTCA | 210 | 0.0 | 28.92502 | 9 |
| CGATAGT | 205 | 0.0 | 28.535585 | 32 |
| CGGAAGA | 215 | 0.0 | 28.27466 | 1 |
| CCGAGAC | 225 | 0.0 | 26.99787 | 25 |
| ATCTCGT | 220 | 0.0 | 26.589977 | 40 |
| AAGAGCG | 230 | 0.0 | 26.426022 | 4 |
| AATCTCG | 225 | 0.0 | 25.999086 | 39 |
| AGAGCGG | 235 | 0.0 | 25.863766 | 5 |