FastQCFastQC Report
Mon 6 Jun 2016
ERR1391363.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391363.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences884490
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA602.4308792E-729.98168418
TATGCCG300.00516201529.98168435
AGATCGG709.3531526E-725.69858617
GATCGCG450.00119860625.0982444
CGCTCCA952.0241714E-823.7813381
CACTGCG602.477102E-422.4862638
ATCGGAA802.9892763E-622.48626119
ACGCCCG550.00394977720.44205712
CGGTTCA951.322215E-518.935829
TCGGAAG951.322215E-518.935820
CTTCGTT1202.3927896E-718.8247552
CCTTCGT1253.6696656E-718.0738141
CGGCTAA1507.3123374E-917.9890117
CCGGCTA1551.0972144E-817.40871816
GCGGTTC1104.6598747E-516.35364528
ACGATCT1104.6598747E-516.35364516
GCCCGGC1956.530172E-1016.14398414
CGTTGGA1401.2036053E-616.1345865
GCACGAT850.00257500815.87265614
CGCCCGG1156.815137E-515.64261813