Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391183.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1005952 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3319 | 0.3299362196208169 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2134 | 0.21213735844254994 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1214 | 0.12068170250668024 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 375 | 0.0 | 43.798645 | 15 |
| GCCGATG | 380 | 0.0 | 43.222347 | 16 |
| TATGCCG | 75 | 0.0 | 41.9987 | 43 |
| AATTCGG | 290 | 0.0 | 41.11942 | 20 |
| GGCGGTC | 275 | 0.0 | 40.907825 | 35 |
| AAGCCGA | 405 | 0.0 | 40.5543 | 14 |
| TAAGCCG | 405 | 0.0 | 40.5543 | 13 |
| GATGACG | 410 | 0.0 | 40.05974 | 19 |
| GAATTCG | 300 | 0.0 | 39.748768 | 19 |
| TCGGTAT | 300 | 0.0 | 39.748768 | 23 |
| CGTCATA | 415 | 0.0 | 39.577087 | 24 |
| ATGACGT | 420 | 0.0 | 39.105934 | 20 |
| CGATGAC | 420 | 0.0 | 39.105934 | 18 |
| CGGTATT | 305 | 0.0 | 39.097153 | 24 |
| GACGTCA | 435 | 0.0 | 38.791904 | 22 |
| CCGATGA | 425 | 0.0 | 38.645866 | 17 |
| ACGTCAT | 430 | 0.0 | 38.19649 | 23 |
| TTCGGTA | 320 | 0.0 | 37.96758 | 22 |
| TGACGTC | 440 | 0.0 | 37.839737 | 21 |
| GCGGTCT | 315 | 0.0 | 36.427444 | 36 |