Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391242.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 638511 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3569 | 0.558956697691974 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2970 | 0.4651446881886138 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACACTATCTCGTATGCCGTC | 1118 | 0.17509486915652198 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACACTATCTCGTATGCC | 963 | 0.15081964132176268 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 450 | 0.0 | 44.494427 | 15 |
| GCCGATG | 450 | 0.0 | 43.994488 | 16 |
| AAGCCGA | 455 | 0.0 | 43.51103 | 14 |
| TAAGCCG | 460 | 0.0 | 43.038086 | 13 |
| ACGTCAT | 465 | 0.0 | 42.575306 | 23 |
| CGTCATA | 465 | 0.0 | 42.575306 | 24 |
| TTCGGTA | 425 | 0.0 | 42.347633 | 22 |
| TGACGTC | 470 | 0.0 | 42.12238 | 21 |
| GATGACG | 470 | 0.0 | 42.12238 | 19 |
| GCGGTCT | 430 | 0.0 | 41.85522 | 36 |
| GACGTCA | 475 | 0.0 | 41.67899 | 22 |
| ATGACGT | 475 | 0.0 | 41.67899 | 20 |
| TATGCCG | 135 | 0.0 | 41.661446 | 43 |
| TCCTCGG | 335 | 0.0 | 41.656147 | 11 |
| TCGGTAT | 435 | 0.0 | 41.374126 | 23 |
| CCGATGA | 480 | 0.0 | 41.24483 | 17 |
| CGATGAC | 480 | 0.0 | 41.24483 | 18 |
| GGCGGTC | 440 | 0.0 | 40.903965 | 35 |
| GATTCGG | 100 | 0.0 | 40.51396 | 11 |
| AATTCGG | 445 | 0.0 | 40.44437 | 20 |