Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378524.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 311860 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCC | 2108 | 0.6759443339960238 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 270 | 0.0 | 44.16541 | 44 |
| CCGTCGT | 270 | 0.0 | 44.16541 | 31 |
| TATCTCG | 270 | 0.0 | 44.16541 | 39 |
| GTCGTAT | 270 | 0.0 | 44.16541 | 33 |
| CGTCGTA | 270 | 0.0 | 44.16541 | 32 |
| ACCGTCG | 270 | 0.0 | 44.16541 | 30 |
| CTCGTAT | 275 | 0.0 | 43.362396 | 42 |
| GACCGTC | 270 | 0.0 | 43.3321 | 29 |
| AGACCGT | 270 | 0.0 | 43.3321 | 28 |
| CGTATAT | 280 | 0.0 | 42.588074 | 35 |
| TCTCGTA | 280 | 0.0 | 42.588074 | 41 |
| TCGTATG | 280 | 0.0 | 42.588074 | 43 |
| TCGTATA | 290 | 0.0 | 41.895355 | 34 |
| ATCTCGT | 285 | 0.0 | 41.84091 | 40 |
| GAGACCG | 280 | 0.0 | 41.784523 | 27 |
| GTATGCC | 290 | 0.0 | 41.11952 | 45 |
| CGGTTCA | 290 | 0.0 | 40.343678 | 9 |
| CGAGACC | 300 | 0.0 | 38.99889 | 26 |
| GTATATC | 310 | 0.0 | 38.466644 | 36 |
| AGAGCGG | 305 | 0.0 | 38.365715 | 5 |