FastQCFastQC Report
Mon 6 Jun 2016
ERR1391222.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391222.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences909063
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCACGAC250.002110926435.98591641
CGCGCCT406.185235E-428.10935811
ACCGCGC450.001230340324.9860979
CCGCGCC550.00394861520.4431710
CACCGCG550.00394861520.443178
CGCCTGG1202.5098598E-718.7395713
ACTAGAC2350.017.22635319
ACGGGAT1205.1981515E-616.86561413
ATCTTCG1358.296065E-716.7199335
GCCACCG1156.597633E-515.7021986
CTTCGTA1251.3864921E-414.3919927
ACGAAAT1150.001206494913.6880369
CGGGATT1352.6635005E-413.32591814
CGTTGGA2003.5314406E-612.4145515
TGAGCCG1454.8650522E-412.40825545
TCTTCGT1651.0118229E-412.3119516
AACCCGG1852.2520106E-512.15673622
ACCCGGG1852.2520106E-512.15673623
CCACCGC1300.003033275712.1086467
GGCTAAC1902.962538E-511.8355217