Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378324.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1282905 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4090 | 0.3188077059486088 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCACAATCTCGTATGCC | 3634 | 0.2832633749186417 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCACAATCTCGTATGCCGTC | 3386 | 0.26393224751637884 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GTACGAA | 30 | 1.1408328E-4 | 37.495327 | 41 |
| TATGCCG | 380 | 0.0 | 36.705948 | 43 |
| ATGCCGT | 420 | 0.0 | 33.21014 | 44 |
| TGCCGTC | 415 | 0.0 | 33.068165 | 45 |
| AGATCGG | 585 | 0.0 | 29.99626 | 25 |
| GATCGGA | 590 | 0.0 | 29.742052 | 26 |
| ATCGGAA | 610 | 0.0 | 28.766905 | 27 |
| TCGGAAG | 675 | 0.0 | 26.996632 | 28 |
| CGTTCAC | 835 | 0.0 | 23.979044 | 32 |
| GACCGTT | 850 | 0.0 | 23.29121 | 29 |
| ACCGTTC | 865 | 0.0 | 23.147402 | 30 |
| AGACCGT | 855 | 0.0 | 22.891882 | 28 |
| CTCGTAT | 865 | 0.0 | 22.627235 | 42 |
| TCGTATG | 870 | 0.0 | 22.497194 | 43 |
| CGAGATC | 790 | 0.0 | 22.497192 | 23 |
| CGTATGC | 885 | 0.0 | 22.115885 | 44 |
| TCTCGTA | 885 | 0.0 | 22.115885 | 41 |
| GAGATCG | 795 | 0.0 | 22.072718 | 24 |
| GAGACCG | 900 | 0.0 | 21.997255 | 27 |
| CCGAGAT | 830 | 0.0 | 21.684042 | 22 |