Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378205.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 770555 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4406 | 0.5717956537820142 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTCTATCTCGTATGCCGTC | 2507 | 0.3253499101297117 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTCTATCTCGTATGCC | 1981 | 0.25708742399958473 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GATCGGA | 645 | 0.0 | 38.02178 | 26 |
| ATCGGAA | 655 | 0.0 | 37.44129 | 27 |
| TCGGAAG | 670 | 0.0 | 36.93886 | 28 |
| AGATCGG | 670 | 0.0 | 36.603054 | 25 |
| TATGCCG | 280 | 0.0 | 36.16165 | 43 |
| ATGCCGT | 280 | 0.0 | 35.35806 | 44 |
| CCGAGAT | 710 | 0.0 | 34.8578 | 22 |
| GAGATCG | 735 | 0.0 | 33.97827 | 24 |
| CGAGATC | 740 | 0.0 | 33.444645 | 23 |
| TGCCGTC | 295 | 0.0 | 32.79746 | 45 |
| ATGCCGA | 1230 | 0.0 | 28.718395 | 19 |
| AATGCCG | 1235 | 0.0 | 28.602123 | 18 |
| TGCCGAG | 1260 | 0.0 | 28.213188 | 20 |
| GCCGAGA | 1270 | 0.0 | 27.45956 | 21 |
| GAATGCC | 1320 | 0.0 | 26.419428 | 17 |
| CGGAAGA | 950 | 0.0 | 26.051619 | 29 |
| GGAATGC | 1480 | 0.0 | 23.715292 | 16 |
| CGTAGTC | 525 | 0.0 | 22.713402 | 32 |
| CCGTAGT | 530 | 0.0 | 22.499123 | 31 |
| TCGTATG | 545 | 0.0 | 22.294155 | 43 |