Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378224.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 947191 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4087 | 0.43148636336282753 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGAGTATCTCGTATGCCGTC | 2439 | 0.2574982236951154 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGAGTATCTCGTATGCC | 2133 | 0.22519217348982412 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 310 | 0.0 | 37.74034 | 43 |
| ATGCCGT | 345 | 0.0 | 33.911613 | 44 |
| GATCGGA | 555 | 0.0 | 32.83645 | 26 |
| TGCCGTC | 365 | 0.0 | 32.66985 | 45 |
| ATCGGAA | 565 | 0.0 | 31.85706 | 27 |
| TCGGAAG | 585 | 0.0 | 31.15253 | 28 |
| AGATCGG | 605 | 0.0 | 30.122694 | 25 |
| TCGTCAC | 40 | 6.155443E-4 | 28.132725 | 2 |
| GAGATCG | 670 | 0.0 | 27.200344 | 24 |
| CCGAGAT | 710 | 0.0 | 25.98482 | 22 |
| CGAGATC | 705 | 0.0 | 25.849972 | 23 |
| TGCCGAG | 1175 | 0.0 | 25.65849 | 20 |
| ATGCCGA | 1180 | 0.0 | 25.54977 | 19 |
| AATGCCG | 1190 | 0.0 | 25.335066 | 18 |
| GCCGAGA | 1310 | 0.0 | 22.842546 | 21 |
| GAATGCC | 1355 | 0.0 | 22.582071 | 17 |
| AGACCGC | 540 | 0.0 | 21.66575 | 25 |
| GACCGCA | 545 | 0.0 | 21.466984 | 26 |
| CGCAGAG | 555 | 0.0 | 21.08019 | 29 |
| GAGACCG | 570 | 0.0 | 20.92017 | 24 |