Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378219.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 681674 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3905 | 0.5728544729592151 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCCGTC | 2175 | 0.3190674721347741 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCC | 1409 | 0.20669704286799848 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 285 | 0.0 | 37.892822 | 44 |
| TCGGAAG | 500 | 0.0 | 37.798088 | 28 |
| AGATCGG | 495 | 0.0 | 37.270844 | 25 |
| TATGCCG | 290 | 0.0 | 37.2395 | 43 |
| ATCGGAA | 490 | 0.0 | 37.192 | 27 |
| GATCGGA | 505 | 0.0 | 36.532806 | 26 |
| TGCCGTC | 290 | 0.0 | 36.463676 | 45 |
| GAGATCG | 530 | 0.0 | 34.809563 | 24 |
| CGAGATC | 545 | 0.0 | 34.264324 | 23 |
| CCGAGAT | 575 | 0.0 | 33.25919 | 22 |
| AATGCCG | 975 | 0.0 | 30.921515 | 18 |
| TGCCGAG | 980 | 0.0 | 30.763754 | 20 |
| ATGCCGA | 990 | 0.0 | 30.453007 | 19 |
| GCCGAGA | 1015 | 0.0 | 29.259604 | 21 |
| GAATGCC | 1090 | 0.0 | 27.659153 | 17 |
| CGGAAGA | 690 | 0.0 | 27.389921 | 29 |
| GGAATGC | 1140 | 0.0 | 26.64339 | 16 |
| CCGGATA | 430 | 0.0 | 25.115011 | 28 |
| ACCGGAT | 440 | 0.0 | 24.544212 | 27 |
| CTCGTAT | 440 | 0.0 | 24.544212 | 39 |