Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378112.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 714450 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1805 | 0.2526418923647561 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACAAACATCTCGTATGCCGTC | 1484 | 0.20771222618797677 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1250 | 0.17495975925537124 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACAAACATCTCGTATGCC | 1084 | 0.15172510322625796 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 190 | 0.0 | 40.29048 | 45 |
| CGATGAC | 190 | 0.0 | 40.256645 | 18 |
| GGCGGTC | 165 | 0.0 | 39.53906 | 35 |
| GACGTCA | 195 | 0.0 | 39.224422 | 22 |
| TGACGTC | 195 | 0.0 | 39.224422 | 21 |
| GCGGTCT | 170 | 0.0 | 38.376144 | 36 |
| GCCGATG | 200 | 0.0 | 38.243813 | 16 |
| TAAGCCG | 200 | 0.0 | 38.243813 | 13 |
| TCGGTAT | 175 | 0.0 | 37.279682 | 23 |
| ATGCCGT | 215 | 0.0 | 35.57813 | 44 |
| CGTCATA | 215 | 0.0 | 35.57813 | 24 |
| AGCCGAT | 215 | 0.0 | 35.575638 | 15 |
| CCGATGA | 215 | 0.0 | 35.575638 | 17 |
| AGGCGGT | 185 | 0.0 | 35.26457 | 34 |
| AATTCGG | 185 | 0.0 | 35.26457 | 20 |
| TATGCCG | 220 | 0.0 | 34.76954 | 43 |
| ACGTCAT | 220 | 0.0 | 34.767105 | 23 |
| CTCGGGG | 170 | 0.0 | 34.4062 | 13 |
| CGGTATT | 190 | 0.0 | 34.338955 | 24 |
| TCGGGGA | 190 | 0.0 | 34.33655 | 14 |