Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391195.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 850405 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2610 | 0.30691258870773336 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1833 | 0.21554435827635066 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1131 | 0.13299545510668448 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGTATATCTCGTATGCCGTC | 916 | 0.10771338362309724 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 375 | 0.0 | 40.799095 | 15 |
| GATGACG | 375 | 0.0 | 40.799095 | 19 |
| TGACGTC | 385 | 0.0 | 39.739376 | 21 |
| ATGACGT | 385 | 0.0 | 39.739376 | 20 |
| CCGATGA | 390 | 0.0 | 39.229897 | 17 |
| GCCGATG | 390 | 0.0 | 39.229897 | 16 |
| AAGCCGA | 390 | 0.0 | 39.229897 | 14 |
| GACGTCA | 395 | 0.0 | 38.73332 | 22 |
| GCGGTCT | 275 | 0.0 | 38.45369 | 36 |
| TAAGCCG | 405 | 0.0 | 38.33248 | 13 |
| ACGTCAT | 400 | 0.0 | 38.24915 | 23 |
| CGTCATA | 400 | 0.0 | 38.24915 | 24 |
| CGATGAC | 405 | 0.0 | 37.77694 | 18 |
| TCGGGGA | 285 | 0.0 | 37.10444 | 14 |
| AGGCGGT | 285 | 0.0 | 37.10444 | 34 |
| GGCGGTC | 285 | 0.0 | 37.10444 | 35 |
| CTCGGGG | 240 | 0.0 | 36.561687 | 13 |
| ATTCGGT | 290 | 0.0 | 36.464706 | 21 |
| TCCTCGG | 250 | 0.0 | 35.099224 | 11 |
| TTCCTCG | 250 | 0.0 | 35.099224 | 10 |