Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378533.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 361312 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTAGTATCTCGTATGCC | 2795 | 0.7735696572491364 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATCTCG | 385 | 0.0 | 45.0 | 39 |
| CTCGTAT | 390 | 0.0 | 44.423077 | 42 |
| CGTATGC | 395 | 0.0 | 43.86076 | 44 |
| TCTCGTA | 395 | 0.0 | 43.86076 | 41 |
| TCGTATG | 395 | 0.0 | 43.86076 | 43 |
| ATCTCGT | 400 | 0.0 | 43.3125 | 40 |
| ACCGTCT | 405 | 0.0 | 42.77778 | 30 |
| GACCGTC | 400 | 0.0 | 42.75 | 29 |
| GAGACCG | 405 | 0.0 | 42.222225 | 27 |
| CGTCTAG | 415 | 0.0 | 41.74699 | 32 |
| CCGTCTA | 415 | 0.0 | 41.74699 | 31 |
| AGACCGT | 410 | 0.0 | 41.707317 | 28 |
| AGCGGTT | 445 | 0.0 | 39.4382 | 7 |
| GAGCGGT | 440 | 0.0 | 39.375 | 6 |
| AGAGCGG | 440 | 0.0 | 39.375 | 5 |
| GCGGTTC | 450 | 0.0 | 39.0 | 8 |
| GTATGCC | 445 | 0.0 | 38.932587 | 45 |
| CCGAGAC | 435 | 0.0 | 38.793106 | 25 |
| CGGTTCA | 455 | 0.0 | 38.571426 | 9 |
| AAGAGCG | 450 | 0.0 | 38.5 | 4 |