FastQCFastQC Report
Mon 6 Jun 2016
ERR1391316.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391316.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences872164
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC21810.25006764782770213Illumina Paired End PCR Primer 2 (100% over 35bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACATAATCTCGTATGCC19770.22667755146967775Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAACAT2650.037.34016832
CGTATGC2650.036.4936244
CTCGTAT2800.035.34182742
TCTCGTA2750.035.1665841
TCGTATG2800.034.538643
CCGAACA2800.034.53662531
GATCGGA2900.034.12314218
ATCTCGT2850.033.93266340
AGATCGG2950.033.5428617
TCGGAAG2950.032.78240220
ATCGGAA3150.031.41495919
GTATGCC3100.031.1961645
ACCGAAC3100.031.1943730
GACCGAA3200.030.92232729
AGACCGA3300.030.66676928
GAGACCG3450.028.02972227
AATCTCG3500.027.63088439
CATAATC4300.023.5363136
CGAGACC4250.023.28269226
GAGATCG4350.022.74745816