Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378454.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 909098 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGATCTATCTCGTATGCCGTC | 3211 | 0.35320724498348915 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGATCTATCTCGTATGCC | 2933 | 0.32262748350562864 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1417 | 0.15586878422348305 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 420 | 0.0 | 35.90462 | 43 |
| ATGCCGT | 440 | 0.0 | 34.272594 | 44 |
| TGCCGTC | 450 | 0.0 | 33.51098 | 45 |
| AGACCGT | 725 | 0.0 | 21.099915 | 25 |
| CGGAAGA | 710 | 0.0 | 20.94194 | 1 |
| TATCTCG | 725 | 0.0 | 20.789621 | 36 |
| ATCGGAA | 285 | 0.0 | 20.52288 | 27 |
| GACCGTG | 750 | 0.0 | 20.396584 | 26 |
| ACCGTGA | 765 | 0.0 | 19.99665 | 27 |
| CGTATGC | 755 | 0.0 | 19.964642 | 41 |
| GAGACCG | 780 | 0.0 | 19.900513 | 24 |
| GATCGGA | 295 | 0.0 | 19.827187 | 26 |
| TCTCGTA | 775 | 0.0 | 19.73863 | 38 |
| AATGCCG | 1080 | 0.0 | 19.580055 | 18 |
| ATCTCGT | 760 | 0.0 | 19.536203 | 37 |
| GTATGCC | 775 | 0.0 | 19.453707 | 42 |
| TCGTATG | 775 | 0.0 | 19.448357 | 40 |
| CTCGTAT | 780 | 0.0 | 19.323687 | 39 |
| ATGCCGA | 1095 | 0.0 | 19.311834 | 19 |
| GAGCGGT | 1115 | 0.0 | 19.180908 | 3 |