Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391281.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 339408 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4224 | 1.2445198698911044 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3009 | 0.8865436289068024 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGAGTATCTCGTATGCCGTC | 2468 | 0.7271484467072079 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGAGTATCTCGTATGCC | 2016 | 0.5939753924480272 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1163 | 0.342655447131476 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 626 | 0.18443878753594495 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCCGATG | 420 | 0.0 | 44.46225 | 16 |
| CCGATGA | 425 | 0.0 | 43.939163 | 17 |
| TAAGCCG | 425 | 0.0 | 43.939163 | 13 |
| CGTCATA | 425 | 0.0 | 43.939163 | 24 |
| GACGTCA | 430 | 0.0 | 43.428246 | 22 |
| AGCCGAT | 435 | 0.0 | 42.92906 | 15 |
| ACGTCAT | 435 | 0.0 | 42.92906 | 23 |
| GATGACG | 440 | 0.0 | 42.441235 | 19 |
| CGATGAC | 440 | 0.0 | 42.441235 | 18 |
| TGACGTC | 455 | 0.0 | 41.53656 | 21 |
| ATGACGT | 450 | 0.0 | 41.498096 | 20 |
| CGGTATT | 460 | 0.0 | 41.085075 | 24 |
| AAGCCGA | 455 | 0.0 | 41.042076 | 14 |
| CTCGGGG | 395 | 0.0 | 41.01078 | 13 |
| ATTCGGT | 470 | 0.0 | 40.68963 | 21 |
| GCGGTCT | 465 | 0.0 | 40.643295 | 36 |
| TTCGGTA | 465 | 0.0 | 40.643295 | 22 |
| TCGGGGA | 470 | 0.0 | 40.210926 | 14 |
| GGCGGTC | 470 | 0.0 | 40.210926 | 35 |
| AATTCGG | 470 | 0.0 | 40.210926 | 20 |