Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391166.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 452815 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3319 | 0.7329704183827832 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2339 | 0.5165464924969358 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1034 | 0.228349325883639 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCAGTATCTCGTATGCCGTC | 904 | 0.19964002959265925 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 496 | 0.10953700738712277 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACGTCAT | 365 | 0.0 | 44.38302 | 23 |
| TAAGCCG | 375 | 0.0 | 43.79946 | 13 |
| AGCCGAT | 380 | 0.0 | 43.223156 | 15 |
| CCGATGA | 375 | 0.0 | 43.19947 | 17 |
| GACGTCA | 375 | 0.0 | 43.19947 | 22 |
| TGACGTC | 375 | 0.0 | 43.19947 | 21 |
| ATGACGT | 375 | 0.0 | 43.19947 | 20 |
| ATCGGAA | 125 | 0.0 | 43.19947 | 27 |
| AAGCCGA | 385 | 0.0 | 42.661816 | 14 |
| ATTCGGT | 285 | 0.0 | 42.631058 | 21 |
| GCCGATG | 380 | 0.0 | 42.631058 | 16 |
| AATTCGG | 285 | 0.0 | 42.631058 | 20 |
| GATGACG | 385 | 0.0 | 42.077408 | 19 |
| CGATGAC | 385 | 0.0 | 42.077408 | 18 |
| CGTCATA | 385 | 0.0 | 42.077408 | 24 |
| TTCGGTA | 290 | 0.0 | 41.896034 | 22 |
| TTCCTCG | 250 | 0.0 | 41.39949 | 10 |
| CGGTATT | 295 | 0.0 | 41.185936 | 24 |
| TCGGTAT | 295 | 0.0 | 41.185936 | 23 |
| TCGGGGA | 290 | 0.0 | 41.120182 | 14 |