Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391169.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1014194 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3306 | 0.32597313728931543 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2407 | 0.2373313192545016 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1913 | 0.1886226895446039 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACGAGTATCTCGTATGCCGTC | 1223 | 0.12058836869474678 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 130 | 0.0 | 41.538006 | 43 |
| TTCGGTA | 315 | 0.0 | 41.428116 | 22 |
| TCGGTAT | 315 | 0.0 | 41.428116 | 23 |
| TGACGTC | 375 | 0.0 | 41.399544 | 21 |
| GATTCGG | 55 | 6.184564E-11 | 40.908646 | 11 |
| GACGTCA | 380 | 0.0 | 40.854813 | 22 |
| GGCGGTC | 320 | 0.0 | 40.7808 | 35 |
| CGGTATT | 330 | 0.0 | 40.22683 | 24 |
| GCGGTCT | 325 | 0.0 | 40.153408 | 36 |
| TAAGCCG | 395 | 0.0 | 39.303368 | 13 |
| TTCCTCG | 275 | 0.0 | 39.272297 | 10 |
| ATTCGGT | 340 | 0.0 | 39.043694 | 21 |
| AGGCGGT | 340 | 0.0 | 39.043694 | 34 |
| CCGATGA | 400 | 0.0 | 38.812077 | 17 |
| ACGTCAT | 400 | 0.0 | 38.812077 | 23 |
| AAGCCGA | 405 | 0.0 | 38.332912 | 14 |
| CGTCATA | 415 | 0.0 | 37.951393 | 24 |
| CGATGAC | 410 | 0.0 | 37.86544 | 18 |
| AGCCGAT | 415 | 0.0 | 37.40923 | 15 |
| GCCGATG | 415 | 0.0 | 37.40923 | 16 |