Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391262.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 580473 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4244 | 0.7311278905306534 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2896 | 0.49890348043750526 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGCAGATCTCGTATGCCGTC | 1060 | 0.18260969933140733 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGCAGATCTCGTATGCC | 1045 | 0.18002559981256666 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 629 | 0.10835990649005207 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGACGTC | 450 | 0.0 | 43.991493 | 21 |
| TAAGCCG | 440 | 0.0 | 43.96877 | 13 |
| GAATTCG | 365 | 0.0 | 43.75866 | 19 |
| GACGTCA | 450 | 0.0 | 43.491592 | 22 |
| CGGTATT | 365 | 0.0 | 43.149773 | 24 |
| ATGACGT | 460 | 0.0 | 43.03516 | 20 |
| GATGACG | 455 | 0.0 | 43.01366 | 19 |
| AGCCGAT | 450 | 0.0 | 42.991688 | 15 |
| TCGGGGA | 380 | 0.0 | 42.623337 | 14 |
| GGCGGTC | 370 | 0.0 | 42.570343 | 35 |
| ATTCGGT | 370 | 0.0 | 42.559338 | 21 |
| AATTCGG | 370 | 0.0 | 42.559338 | 20 |
| AAGCCGA | 455 | 0.0 | 42.51925 | 14 |
| CAGGCGG | 375 | 0.0 | 42.002735 | 33 |
| TCGGTAT | 375 | 0.0 | 41.99912 | 23 |
| CGATGAC | 475 | 0.0 | 41.67615 | 18 |
| CGTCATA | 470 | 0.0 | 41.64806 | 24 |
| CGGTCTC | 385 | 0.0 | 41.49621 | 37 |
| AGGCGGT | 380 | 0.0 | 41.45007 | 34 |
| GCCGATG | 470 | 0.0 | 41.162254 | 16 |