FastQCFastQC Report
Mon 6 Jun 2016
ERR1391217.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391217.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences817413
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAACGAC550.00395338120.43861241
CGGGCGT850.002482409615.9597981
CCTTCGT1156.5026616E-515.7284951
GCGCTCC900.00377065214.9892348
CGTATAA900.003772186814.98831711
CGCTCCA950.005399912614.2003279
TCGTATA950.005399912614.20032710
CTTCGTT1403.459366E-412.9198362
CGGGATT1250.002263762512.59018614
GCTAGAC1651.04919745E-412.26391833
GCCGAGG2207.984054E-712.26316744
AGGCCGA2401.7273669E-712.17800642
ACGGGAT1350.004028775311.65757813
CTAGACA4650.011.60385820
ACTAGAC2951.7524144E-811.431766519
CCGAGGC2056.4438456E-510.9670645
TTCGTTG1450.0065794110.9150343
GACCTCG1650.001441255710.90059439
AAACGGG1903.8922485E-410.64959311
ACCTCGT1750.002352216310.27770340