Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378341.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 682662 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGATTATCTCGTATGCC | 2889 | 0.42319625231813107 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGATTATCTCGTATGCCGTC | 2589 | 0.3792506394086678 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2514 | 0.36826423618130205 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 345 | 0.0 | 37.16986 | 45 |
| ATGCCGT | 375 | 0.0 | 34.796204 | 44 |
| TATGCCG | 375 | 0.0 | 34.19627 | 43 |
| ATCGGAA | 395 | 0.0 | 34.17349 | 27 |
| GATCGGA | 415 | 0.0 | 33.61079 | 26 |
| AGATCGG | 430 | 0.0 | 32.438324 | 25 |
| TCGGAAG | 425 | 0.0 | 31.761244 | 28 |
| CCGAGAT | 480 | 0.0 | 28.121935 | 22 |
| GAGATCG | 495 | 0.0 | 27.724247 | 24 |
| CGAGATC | 490 | 0.0 | 27.548014 | 23 |
| GCACCCG | 50 | 7.159526E-5 | 26.997055 | 12 |
| ATGCCGA | 1160 | 0.0 | 22.885435 | 19 |
| AATGCCG | 1170 | 0.0 | 22.689833 | 18 |
| TGCCGAG | 1180 | 0.0 | 22.688206 | 20 |
| TCGATTA | 720 | 0.0 | 21.872616 | 34 |
| CGTCGAT | 725 | 0.0 | 21.72177 | 32 |
| ACCGTCG | 715 | 0.0 | 21.710918 | 30 |
| GACCGTC | 720 | 0.0 | 21.56015 | 29 |
| CTCGTAT | 710 | 0.0 | 21.546946 | 42 |
| GTCGATT | 725 | 0.0 | 21.411459 | 33 |