Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391265.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 622011 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 5643 | 0.9072186826277991 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3700 | 0.5948447857031467 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGAGATCTCGTATGCCGTC | 914 | 0.14694273895477733 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGAGATCTCGTATGCC | 807 | 0.12974047082768633 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 730 | 0.11736126853062083 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 110 | 0.0 | 45.000805 | 45 |
| CCGATGA | 505 | 0.0 | 43.657127 | 17 |
| CGATGAC | 505 | 0.0 | 43.657127 | 18 |
| GCCGATG | 500 | 0.0 | 43.193825 | 16 |
| TGACGTC | 520 | 0.0 | 42.830418 | 21 |
| AGCCGAT | 505 | 0.0 | 42.766163 | 15 |
| GGCGGTC | 440 | 0.0 | 42.437115 | 35 |
| TAAGCCG | 510 | 0.0 | 42.34689 | 13 |
| GACGTCA | 530 | 0.0 | 42.022297 | 22 |
| GATGACG | 530 | 0.0 | 42.022297 | 19 |
| CGTCATA | 530 | 0.0 | 42.022297 | 24 |
| TCGGTAT | 445 | 0.0 | 41.960293 | 23 |
| AAGCCGA | 515 | 0.0 | 41.935753 | 14 |
| ACGTCAT | 535 | 0.0 | 41.629566 | 23 |
| GCGGTCT | 450 | 0.0 | 41.49407 | 36 |
| CGGTATT | 450 | 0.0 | 41.49407 | 24 |
| TATGCCG | 120 | 0.0 | 41.244102 | 43 |
| ATGCCGT | 120 | 0.0 | 41.244102 | 44 |
| AATTCGG | 455 | 0.0 | 41.03809 | 20 |
| TTCGGTA | 455 | 0.0 | 41.03809 | 22 |