Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378311.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1013612 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGATTAATCTCGTATGCC | 4316 | 0.4258039565435295 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGATTAATCTCGTATGCCGTC | 3836 | 0.3784485582254354 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3721 | 0.36710299404505864 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 455 | 0.0 | 40.544735 | 43 |
| TGCCGTC | 460 | 0.0 | 40.104034 | 45 |
| ATGCCGT | 490 | 0.0 | 37.648685 | 44 |
| GCGTCAA | 30 | 0.0051499004 | 29.996515 | 15 |
| CGATAGA | 30 | 0.0051499004 | 29.996515 | 23 |
| ATCGGAA | 410 | 0.0 | 29.081987 | 27 |
| GATCGGA | 425 | 0.0 | 28.584913 | 26 |
| AGATCGG | 440 | 0.0 | 26.58782 | 25 |
| TCGGAAG | 490 | 0.0 | 24.333906 | 28 |
| CGAGATC | 490 | 0.0 | 23.874775 | 23 |
| GGTGCGA | 50 | 0.0022659558 | 22.497387 | 13 |
| CGGAAGA | 945 | 0.0 | 22.163244 | 1 |
| AATGCCG | 1410 | 0.0 | 21.380493 | 18 |
| GACCGAG | 945 | 0.0 | 21.188013 | 29 |
| ACCGAGA | 925 | 0.0 | 21.159702 | 30 |
| ATGCCGA | 1425 | 0.0 | 21.155437 | 19 |
| CTCGTAT | 950 | 0.0 | 21.076498 | 42 |
| CGTATGC | 955 | 0.0 | 20.966148 | 44 |
| TGCCGAG | 1445 | 0.0 | 20.862627 | 20 |
| AGACCGA | 955 | 0.0 | 20.730574 | 28 |