Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378538.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 267912 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCC | 2215 | 0.8267640120636627 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACCGATA | 325 | 0.0 | 42.92112 | 30 |
| TCTCGTA | 340 | 0.0 | 42.35101 | 41 |
| CTCGTAT | 335 | 0.0 | 42.311504 | 42 |
| TCGTATG | 335 | 0.0 | 42.311504 | 43 |
| CGATACT | 335 | 0.0 | 42.311504 | 32 |
| GACCGAT | 330 | 0.0 | 42.270798 | 29 |
| GAGACCG | 330 | 0.0 | 42.270798 | 27 |
| AGACCGA | 335 | 0.0 | 41.639893 | 28 |
| CCGATAC | 345 | 0.0 | 41.085083 | 31 |
| CATCTCG | 345 | 0.0 | 41.085083 | 39 |
| ATCTCGT | 360 | 0.0 | 40.623146 | 40 |
| CGTATGC | 350 | 0.0 | 40.498154 | 44 |
| ATACTCA | 360 | 0.0 | 39.373203 | 34 |
| CCGAGAC | 355 | 0.0 | 39.293983 | 25 |
| CGGTTCA | 375 | 0.0 | 37.798275 | 9 |
| ACTCATC | 375 | 0.0 | 37.798275 | 36 |
| ATGCCGA | 375 | 0.0 | 37.798275 | 22 |
| TGCCGAG | 375 | 0.0 | 37.798275 | 23 |
| AGCGGTT | 370 | 0.0 | 37.700985 | 7 |
| CGGAAGA | 355 | 0.0 | 37.41361 | 1 |