Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378556.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 220897 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGACAATCTCGTATGCC | 1623 | 0.734731571728 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 165 | 0.0 | 45.000004 | 42 |
| CGTATGC | 170 | 0.0 | 43.676468 | 44 |
| TCTCGTA | 170 | 0.0 | 43.676468 | 41 |
| AGACCGC | 165 | 0.0 | 43.636368 | 28 |
| CCGCAGA | 165 | 0.0 | 43.636368 | 31 |
| TCGTATG | 175 | 0.0 | 42.42857 | 43 |
| CGCAGAC | 175 | 0.0 | 42.42857 | 32 |
| ACCGCAG | 170 | 0.0 | 42.35294 | 30 |
| GACCGCA | 170 | 0.0 | 42.35294 | 29 |
| GCGGTTC | 180 | 0.0 | 41.25 | 8 |
| CGGTTCA | 180 | 0.0 | 41.25 | 9 |
| AATCTCG | 180 | 0.0 | 41.25 | 39 |
| GAGACCG | 175 | 0.0 | 41.142857 | 27 |
| AGCGGTT | 185 | 0.0 | 40.135136 | 7 |
| GAGCGGT | 185 | 0.0 | 40.135136 | 6 |
| AGAGCGG | 185 | 0.0 | 40.135136 | 5 |
| TGCCGAG | 185 | 0.0 | 40.135136 | 23 |
| ATCTCGT | 190 | 0.0 | 39.078945 | 40 |
| GACAATC | 190 | 0.0 | 39.078945 | 36 |
| AATGCCG | 190 | 0.0 | 39.078945 | 21 |