Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391286.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 716788 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4198 | 0.5856682868574808 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2771 | 0.386585712930462 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTAGAATCTCGTATGCCGTC | 1678 | 0.234099901226025 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTAGAATCTCGTATGCC | 1621 | 0.2261477591700754 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 956 | 0.1333727685173301 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 505 | 0.0 | 42.76651 | 13 |
| CGTCATA | 515 | 0.0 | 41.93902 | 24 |
| AGCCGAT | 520 | 0.0 | 41.53286 | 15 |
| GATGACG | 525 | 0.0 | 41.140175 | 19 |
| CGATGAC | 525 | 0.0 | 41.140175 | 18 |
| GCCGATG | 525 | 0.0 | 41.137306 | 16 |
| AAGCCGA | 525 | 0.0 | 41.137306 | 14 |
| GCGGTCT | 380 | 0.0 | 40.849754 | 36 |
| GACGTCA | 530 | 0.0 | 40.75206 | 22 |
| ATGACGT | 540 | 0.0 | 40.414036 | 20 |
| TGACGTC | 535 | 0.0 | 40.371204 | 21 |
| ACGTCAT | 535 | 0.0 | 40.371204 | 23 |
| CCGATGA | 535 | 0.0 | 40.368385 | 17 |
| CGGTATT | 385 | 0.0 | 40.32205 | 24 |
| TATGCCG | 230 | 0.0 | 40.103287 | 43 |
| AGGCGGT | 390 | 0.0 | 39.802322 | 34 |
| GGCGGTC | 390 | 0.0 | 39.802322 | 35 |
| TGCCGTC | 240 | 0.0 | 38.43768 | 45 |
| TCGGTAT | 410 | 0.0 | 38.412132 | 23 |
| TTCGGTA | 405 | 0.0 | 38.330837 | 22 |