Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391296.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 847029 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4382 | 0.5173376590411899 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2911 | 0.34367182233430027 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACTGATCTCGTATGCCGTC | 1649 | 0.19468046548583343 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACTGATCTCGTATGCC | 1422 | 0.16788091080706802 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 200 | 0.0 | 42.742374 | 43 |
| GCCGATG | 470 | 0.0 | 42.598778 | 16 |
| AGCCGAT | 485 | 0.0 | 41.281292 | 15 |
| TCGGTAT | 360 | 0.0 | 41.245075 | 23 |
| AATTCGG | 360 | 0.0 | 41.24264 | 20 |
| CCGATGA | 490 | 0.0 | 40.860054 | 17 |
| AAGCCGA | 495 | 0.0 | 40.44733 | 14 |
| GCGGTCT | 370 | 0.0 | 40.130344 | 36 |
| AGGCGGT | 370 | 0.0 | 40.130344 | 34 |
| CGGTATT | 370 | 0.0 | 40.130344 | 24 |
| TAAGCCG | 500 | 0.0 | 40.042854 | 13 |
| CGTCATA | 505 | 0.0 | 39.64873 | 24 |
| ATTCGGT | 375 | 0.0 | 39.592934 | 21 |
| TTCGGTA | 375 | 0.0 | 39.592934 | 22 |
| GAATTCG | 375 | 0.0 | 39.592934 | 19 |
| CGATGAC | 515 | 0.0 | 39.313377 | 18 |
| GGCGGTC | 380 | 0.0 | 39.07428 | 35 |
| TGACGTC | 520 | 0.0 | 38.93536 | 21 |
| ATGACGT | 520 | 0.0 | 38.93536 | 20 |
| ATGCCGT | 220 | 0.0 | 38.856705 | 44 |