Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378099.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 686706 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCGCAAATCTCGTATGCCGTC | 1668 | 0.24289870774392536 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1333 | 0.19411509437808902 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1003 | 0.14605959464457863 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCGCAAATCTCGTATGCC | 979 | 0.14256464920941422 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGACGTC | 150 | 0.0 | 40.495937 | 21 |
| AGCCGAT | 150 | 0.0 | 40.49299 | 15 |
| TAAGCCG | 150 | 0.0 | 40.49299 | 13 |
| TGCCGTC | 185 | 0.0 | 40.145725 | 45 |
| CGATGAC | 165 | 0.0 | 38.177986 | 18 |
| ATGACGT | 160 | 0.0 | 37.96494 | 20 |
| CGTCATA | 160 | 0.0 | 37.96494 | 24 |
| GCCGATG | 160 | 0.0 | 37.962173 | 16 |
| AAGCCGA | 165 | 0.0 | 36.811806 | 14 |
| GCGGTCT | 150 | 0.0 | 35.99377 | 36 |
| CGGGGAA | 150 | 0.0 | 35.99377 | 15 |
| GGCGGTC | 150 | 0.0 | 35.99377 | 35 |
| GACGTCA | 170 | 0.0 | 35.731712 | 22 |
| TATGCCG | 210 | 0.0 | 35.35102 | 43 |
| ATTCGGT | 160 | 0.0 | 35.15272 | 21 |
| AATTCGG | 155 | 0.0 | 34.835217 | 20 |
| ATGCCGT | 215 | 0.0 | 34.528904 | 44 |
| TTCGGTA | 160 | 0.0 | 33.746613 | 22 |
| CTCGGGG | 135 | 0.0 | 33.327564 | 13 |
| ACGTCAT | 185 | 0.0 | 32.83454 | 23 |