Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391253.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 696408 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4070 | 0.5844275195000631 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2950 | 0.42360225614869446 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTATCATCTCGTATGCCGTC | 750 | 0.10769548885136299 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 395 | 0.0 | 44.424286 | 13 |
| CGTCATA | 420 | 0.0 | 43.386906 | 24 |
| TGACGTC | 425 | 0.0 | 42.87647 | 21 |
| AGCCGAT | 410 | 0.0 | 42.799007 | 15 |
| ACGTCAT | 430 | 0.0 | 42.377907 | 23 |
| AAGCCGA | 415 | 0.0 | 42.28335 | 14 |
| TTCCTCG | 325 | 0.0 | 42.252277 | 10 |
| GACGTCA | 440 | 0.0 | 41.414772 | 22 |
| ATGACGT | 440 | 0.0 | 41.414772 | 20 |
| CCGATGA | 435 | 0.0 | 40.85646 | 17 |
| TCGGGGA | 375 | 0.0 | 40.794403 | 14 |
| CTCGGGG | 340 | 0.0 | 40.36211 | 13 |
| GGCGGTC | 380 | 0.0 | 40.257633 | 35 |
| GATGACG | 455 | 0.0 | 40.049446 | 19 |
| GCCGATG | 445 | 0.0 | 39.93834 | 16 |
| TCCTCGG | 345 | 0.0 | 39.802868 | 11 |
| CCTCGGG | 345 | 0.0 | 39.777153 | 12 |
| GCGGTCT | 385 | 0.0 | 39.734806 | 36 |
| AGGCGGT | 385 | 0.0 | 39.734806 | 34 |
| GAATTCG | 385 | 0.0 | 39.734806 | 19 |