Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391177.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1271535 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2517 | 0.19794972218617657 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1663 | 0.1307868049247563 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1439 | 0.11317030203651492 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 265 | 0.0 | 41.602425 | 13 |
| TGACGTC | 275 | 0.0 | 40.907772 | 21 |
| CGATGAC | 275 | 0.0 | 40.907772 | 18 |
| CCGATGA | 280 | 0.0 | 40.177273 | 17 |
| CGTCATA | 275 | 0.0 | 40.089615 | 24 |
| TCGGGGA | 285 | 0.0 | 39.47241 | 14 |
| CGGTATT | 285 | 0.0 | 39.47241 | 24 |
| GGCGGTC | 280 | 0.0 | 39.373726 | 35 |
| TCGGTAT | 285 | 0.0 | 38.68296 | 23 |
| CTCGGGG | 240 | 0.0 | 38.436256 | 13 |
| GCGGTCT | 295 | 0.0 | 38.13436 | 36 |
| TTCGGTA | 295 | 0.0 | 38.13436 | 22 |
| AGGCGGT | 290 | 0.0 | 38.016014 | 34 |
| GCCGATG | 290 | 0.0 | 38.016014 | 16 |
| AAGCCGA | 290 | 0.0 | 38.016014 | 14 |
| TCCTCGG | 250 | 0.0 | 36.898808 | 11 |
| ACGTCAT | 300 | 0.0 | 36.748814 | 23 |
| GATGACG | 310 | 0.0 | 36.28915 | 19 |
| CCTCGGG | 255 | 0.0 | 36.1753 | 12 |
| AGCCGAT | 305 | 0.0 | 36.14637 | 15 |