Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391298.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 657172 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3854 | 0.5864522529870414 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2631 | 0.4003518104849263 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGAGTCATCTCGTATGCC | 1161 | 0.17666607828696293 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGAGTCATCTCGTATGCCGTC | 1141 | 0.17362273499175254 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 450 | 0.0 | 44.493603 | 15 |
| GCCGATG | 460 | 0.0 | 43.526352 | 16 |
| ATGACGT | 460 | 0.0 | 43.526352 | 20 |
| TAAGCCG | 460 | 0.0 | 43.523045 | 13 |
| CCGATGA | 465 | 0.0 | 43.058327 | 17 |
| CGATGAC | 465 | 0.0 | 43.058327 | 18 |
| TCCTCGG | 280 | 0.0 | 42.62208 | 11 |
| TGACGTC | 470 | 0.0 | 42.600258 | 21 |
| GACGTCA | 470 | 0.0 | 42.597015 | 22 |
| CGTCATA | 475 | 0.0 | 42.15184 | 24 |
| TCGGGGA | 365 | 0.0 | 41.908596 | 14 |
| AAGCCGA | 480 | 0.0 | 41.70958 | 14 |
| CGGTATT | 370 | 0.0 | 41.345406 | 24 |
| CCTCGGG | 290 | 0.0 | 41.11165 | 12 |
| TATGCCG | 115 | 0.0 | 41.07793 | 43 |
| ACGTCAT | 490 | 0.0 | 40.861473 | 23 |
| TCGGTAT | 375 | 0.0 | 40.794132 | 23 |
| TTCGGTA | 375 | 0.0 | 40.79103 | 22 |
| ATTCGGT | 370 | 0.0 | 40.737385 | 21 |
| GATGACG | 495 | 0.0 | 40.44873 | 19 |