Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391305.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 724444 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4050 | 0.5590494227297073 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3184 | 0.4395094720917007 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACAAATCTCGTATGCC | 1989 | 0.27455538316281175 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATACAAATCTCGTATGCCGTC | 1979 | 0.27317501421780016 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 881 | 0.12161050405552395 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCCGATG | 365 | 0.0 | 42.52942 | 16 |
| CGGTATT | 435 | 0.0 | 42.408978 | 24 |
| ATGACGT | 370 | 0.0 | 41.954697 | 20 |
| CGTCATA | 370 | 0.0 | 41.954697 | 24 |
| TCGGTAT | 440 | 0.0 | 41.927063 | 23 |
| GCGGTCT | 445 | 0.0 | 41.455967 | 36 |
| TTCGGTA | 445 | 0.0 | 41.455967 | 22 |
| AGCCGAT | 375 | 0.0 | 41.3953 | 15 |
| AAGCCGA | 375 | 0.0 | 41.3953 | 14 |
| CGATGAC | 375 | 0.0 | 41.3953 | 18 |
| TAAGCCG | 375 | 0.0 | 41.3953 | 13 |
| AGATTCG | 60 | 3.6379788E-12 | 41.265255 | 10 |
| GGCGGTC | 450 | 0.0 | 40.995346 | 35 |
| GATGACG | 380 | 0.0 | 40.850628 | 19 |
| ATTCGGT | 460 | 0.0 | 40.10414 | 21 |
| TCGGGGA | 455 | 0.0 | 40.050396 | 14 |
| CGGGGAA | 455 | 0.0 | 40.050396 | 15 |
| TCCTCGG | 405 | 0.0 | 40.01479 | 11 |
| CCGATGA | 390 | 0.0 | 39.803173 | 17 |
| AATTCGG | 465 | 0.0 | 39.672916 | 20 |