Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391291.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 565655 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4442 | 0.7852843164119472 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3084 | 0.5452086519168043 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCTGAATCTCGTATGCCGTC | 2553 | 0.4513351778027243 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCTGAATCTCGTATGCC | 1904 | 0.336600931663293 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1097 | 0.19393446535432374 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 677 | 0.11968425984036206 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GGCGGTC | 420 | 0.0 | 42.31478 | 35 |
| GCGGTCT | 415 | 0.0 | 42.282513 | 36 |
| AGCCGAT | 490 | 0.0 | 42.23826 | 15 |
| GATGACG | 490 | 0.0 | 42.23826 | 19 |
| CGATGAC | 490 | 0.0 | 42.23826 | 18 |
| CGTCATA | 500 | 0.0 | 41.843422 | 24 |
| CCGATGA | 505 | 0.0 | 41.42913 | 17 |
| ACGTCAT | 505 | 0.0 | 41.42913 | 23 |
| GCCGATG | 500 | 0.0 | 41.393494 | 16 |
| AAGCCGA | 500 | 0.0 | 41.393494 | 14 |
| TAAGCCG | 500 | 0.0 | 41.393494 | 13 |
| AGGCGGT | 425 | 0.0 | 41.28763 | 34 |
| CGGTCTC | 425 | 0.0 | 41.28763 | 37 |
| TCGGTAT | 425 | 0.0 | 41.28763 | 23 |
| GACGTCA | 510 | 0.0 | 41.022964 | 22 |
| TGACGTC | 510 | 0.0 | 41.022964 | 21 |
| TGCCGTC | 265 | 0.0 | 40.77354 | 45 |
| TCGGGGA | 425 | 0.0 | 40.7583 | 14 |
| TTCGGTA | 435 | 0.0 | 40.338486 | 22 |
| CGGTATT | 435 | 0.0 | 40.338486 | 24 |