FastQCFastQC Report
Mon 6 Jun 2016
ERR1378567.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378567.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences333527
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAGAATCTCGTATGCC15030.4506381792178744Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTC1700.042.35181429
CCGTCGA1700.042.35181431
ACCGTCG1700.042.35181430
ATCTCGT1800.041.24889840
GTCGAGA1750.041.1417633
GAGACCG1750.041.1417627
AGACCGT1750.041.1417628
CGTATGC1800.039.9989344
TCGTATG1800.039.9989343
CGTCGAG1800.039.9989332
TCTCGTA1850.038.91788541
AGAGCGG2050.037.316085
CTCGTAT1950.036.92209242
CGGTTCA2050.036.2185449
AGCGGTT2050.036.2185447
GAGCGGT2050.036.2185446
TCGAGAA2000.035.99904334
GCGGTTC2100.035.35628
GTATGCC2050.035.12101445
CCGAGAC2050.035.12101425