Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378573.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 317634 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCC | 1772 | 0.5578747867041941 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 190 | 0.0 | 43.81579 | 41 |
| CGGCATG | 195 | 0.0 | 42.692307 | 32 |
| GACCGGC | 190 | 0.0 | 42.63158 | 29 |
| GAGACCG | 190 | 0.0 | 42.63158 | 27 |
| CTCGTAT | 200 | 0.0 | 41.625004 | 42 |
| TCGTATG | 200 | 0.0 | 41.625004 | 43 |
| AGACCGG | 195 | 0.0 | 41.53846 | 28 |
| AATCTCG | 210 | 0.0 | 40.714287 | 39 |
| CGTATGC | 205 | 0.0 | 40.609756 | 44 |
| CCGGCAT | 200 | 0.0 | 40.500004 | 31 |
| ATCTCGT | 210 | 0.0 | 39.642857 | 40 |
| ACCGGCA | 205 | 0.0 | 39.512196 | 30 |
| AGAGCGG | 240 | 0.0 | 35.625 | 5 |
| GTATGCC | 235 | 0.0 | 35.425533 | 45 |
| AGCGGTT | 250 | 0.0 | 35.100002 | 7 |
| AAGAGCG | 245 | 0.0 | 34.89796 | 4 |
| GCGGTTC | 250 | 0.0 | 34.2 | 8 |
| GAGCGGT | 255 | 0.0 | 33.52941 | 6 |
| CCGAGAC | 245 | 0.0 | 33.061226 | 25 |
| CGGTTCA | 260 | 0.0 | 32.884617 | 9 |