Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378231.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 634912 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5407 | 0.8516140819515146 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTGAATCTCGTATGCCGTC | 3510 | 0.5528325185222519 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTGAATCTCGTATGCC | 3296 | 0.5191270601280177 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 711 | 0.11198402298271257 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 445 | 0.0 | 39.945496 | 43 |
| TGCCGTC | 450 | 0.0 | 39.50166 | 45 |
| ATGCCGT | 460 | 0.0 | 39.13208 | 44 |
| AGATCGG | 630 | 0.0 | 38.92714 | 25 |
| GATCGGA | 630 | 0.0 | 38.92714 | 26 |
| TCGGAAG | 655 | 0.0 | 38.815365 | 28 |
| ATCGGAA | 645 | 0.0 | 38.02186 | 27 |
| CCGAGAT | 660 | 0.0 | 37.498623 | 22 |
| CGAGATC | 680 | 0.0 | 36.06485 | 23 |
| GAGATCG | 710 | 0.0 | 34.540985 | 24 |
| GGTCGGA | 30 | 0.005146469 | 29.998896 | 26 |
| CGAGCTT | 30 | 0.005146469 | 29.998896 | 22 |
| GTCGGAA | 30 | 0.005146469 | 29.998896 | 27 |
| AATGCCG | 1530 | 0.0 | 28.528362 | 18 |
| ATGCCGA | 1540 | 0.0 | 28.343115 | 19 |
| TGCCGAG | 1540 | 0.0 | 28.197016 | 20 |
| GCCGAGA | 1535 | 0.0 | 27.55599 | 21 |
| GAATGCC | 1630 | 0.0 | 26.91619 | 17 |
| GGAATGC | 1665 | 0.0 | 26.350384 | 16 |
| AGGAATG | 1855 | 0.0 | 23.53013 | 15 |