Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378120.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 784733 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGGCCATCTCGTATGCCGTC | 2396 | 0.3053267799366154 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGGCCATCTCGTATGCC | 1947 | 0.24810986666802592 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1644 | 0.20949800760258586 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1140 | 0.14527234103828945 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGGTAT | 160 | 0.0 | 43.59079 | 23 |
| GGCGGTC | 160 | 0.0 | 42.184635 | 35 |
| GCCGATG | 205 | 0.0 | 41.704483 | 16 |
| GATGACG | 205 | 0.0 | 41.704483 | 19 |
| CGATGAC | 205 | 0.0 | 41.704483 | 18 |
| TTCGGTA | 170 | 0.0 | 41.026623 | 22 |
| ATGACGT | 210 | 0.0 | 40.711517 | 20 |
| TAAGCCG | 210 | 0.0 | 40.711517 | 13 |
| CCGATGA | 215 | 0.0 | 39.76474 | 17 |
| GACGTCA | 215 | 0.0 | 39.76474 | 22 |
| AGGCGGT | 170 | 0.0 | 39.703182 | 34 |
| ACGTCAT | 220 | 0.0 | 38.860996 | 23 |
| GCGGTCT | 175 | 0.0 | 38.568806 | 36 |
| AGCCGAT | 225 | 0.0 | 37.997414 | 15 |
| TGACGTC | 225 | 0.0 | 37.997414 | 21 |
| TGCCGTC | 255 | 0.0 | 37.955524 | 45 |
| TTCCTCG | 155 | 0.0 | 37.751396 | 10 |
| AATTCGG | 180 | 0.0 | 37.49745 | 20 |
| CGTCATA | 230 | 0.0 | 37.171387 | 24 |
| CGGTATT | 195 | 0.0 | 35.7668 | 24 |