Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391268.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 662790 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4129 | 0.6229725855851778 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2800 | 0.42245658504201933 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTGAGATCTCGTATGCCGTC | 1532 | 0.23114410295870486 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTGAGATCTCGTATGCC | 1017 | 0.15344226678133344 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 881 | 0.13292294693643536 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGATTCG | 100 | 0.0 | 45.009205 | 10 |
| GCCGATG | 445 | 0.0 | 42.97335 | 16 |
| CGGTATT | 420 | 0.0 | 42.852974 | 24 |
| GCGGTCT | 415 | 0.0 | 42.82716 | 36 |
| GATTCGG | 100 | 0.0 | 42.758743 | 11 |
| CGATGAC | 450 | 0.0 | 42.495865 | 18 |
| CAGGCGG | 420 | 0.0 | 42.317314 | 33 |
| TCGGTAT | 420 | 0.0 | 42.317314 | 23 |
| AGCCGAT | 455 | 0.0 | 42.02888 | 15 |
| GACGTCA | 455 | 0.0 | 42.02888 | 22 |
| GAATTCG | 425 | 0.0 | 41.81946 | 19 |
| CCGATGA | 460 | 0.0 | 41.57204 | 17 |
| CGTCATA | 455 | 0.0 | 41.534424 | 24 |
| TCGGGGA | 430 | 0.0 | 41.33319 | 14 |
| AATTCGG | 430 | 0.0 | 41.33319 | 20 |
| TTCGGTA | 430 | 0.0 | 41.33319 | 22 |
| GGCGGTC | 425 | 0.0 | 41.290104 | 35 |
| GATGACG | 465 | 0.0 | 41.125034 | 19 |
| ATTCGGT | 435 | 0.0 | 40.858097 | 21 |
| CGGGGAA | 435 | 0.0 | 40.858097 | 15 |