Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378106.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 905298 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1934 | 0.2136313125622723 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTATATCTCGTATGCCGTC | 1909 | 0.21086979094176722 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1447 | 0.15983687139483352 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTATATCTCGTATGCC | 1213 | 0.13398902902690607 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 230 | 0.0 | 41.081814 | 43 |
| TAAGCCG | 210 | 0.0 | 40.709187 | 13 |
| TGACGTC | 210 | 0.0 | 39.637894 | 21 |
| CGTCATA | 210 | 0.0 | 39.637894 | 24 |
| ACGTCAT | 215 | 0.0 | 38.716084 | 23 |
| GACGTCA | 220 | 0.0 | 37.83617 | 22 |
| CCGATGA | 235 | 0.0 | 37.33575 | 17 |
| AGCCGAT | 230 | 0.0 | 37.16926 | 15 |
| GATGACG | 230 | 0.0 | 37.16926 | 19 |
| TCGGGGA | 190 | 0.0 | 36.70593 | 14 |
| AAGCCGA | 235 | 0.0 | 36.378426 | 14 |
| TGCCGTC | 260 | 0.0 | 36.367718 | 45 |
| GCCGATG | 240 | 0.0 | 35.62054 | 16 |
| CGATGAC | 250 | 0.0 | 35.095604 | 18 |
| ATGCCGT | 270 | 0.0 | 34.995617 | 44 |
| GCGGTCT | 200 | 0.0 | 34.870632 | 36 |
| TCGGTAT | 200 | 0.0 | 34.870632 | 23 |
| GGCGGTC | 205 | 0.0 | 34.02013 | 35 |
| ATGACGT | 245 | 0.0 | 33.975338 | 20 |
| TTCCTCG | 180 | 0.0 | 32.51389 | 10 |