Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378551.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 230328 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACTAGATCTCGTATGCC | 2681 | 1.1639922197909067 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 289 | 0.12547323816470424 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGGA | 260 | 0.0 | 43.26819 | 29 |
| AGACCGG | 260 | 0.0 | 43.26819 | 28 |
| GGACTAG | 270 | 0.0 | 42.498974 | 33 |
| ACCGGAC | 265 | 0.0 | 42.451805 | 30 |
| CCGGACT | 265 | 0.0 | 42.451805 | 31 |
| TCTCGTA | 265 | 0.0 | 42.451805 | 41 |
| TCGTATG | 265 | 0.0 | 42.451805 | 43 |
| CGGACTA | 265 | 0.0 | 42.451805 | 32 |
| CGTATGC | 270 | 0.0 | 41.66566 | 44 |
| CTCGTAT | 270 | 0.0 | 41.66566 | 42 |
| GAGACCG | 270 | 0.0 | 41.66566 | 27 |
| CTAGATC | 280 | 0.0 | 40.981155 | 36 |
| ACTAGAT | 285 | 0.0 | 40.262188 | 35 |
| GACTAGA | 285 | 0.0 | 40.262188 | 34 |
| ATCTCGT | 285 | 0.0 | 39.472733 | 40 |
| GATCTCG | 285 | 0.0 | 39.472733 | 39 |
| GTATGCC | 295 | 0.0 | 38.89737 | 45 |
| CCGAGAC | 295 | 0.0 | 38.89737 | 25 |
| CGAGACC | 290 | 0.0 | 38.792168 | 26 |
| GAGCGGT | 300 | 0.0 | 38.249077 | 6 |