Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378506.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1144194 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAAGATATCTCGTATGCCGTC | 4030 | 0.35221299884460155 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAAGATATCTCGTATGCC | 2930 | 0.2560754557356532 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1894 | 0.16553136968031645 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 545 | 0.0 | 36.751972 | 43 |
| TGCCGTC | 550 | 0.0 | 36.00867 | 45 |
| ATGCCGT | 600 | 0.0 | 33.00795 | 44 |
| GATCGGA | 365 | 0.0 | 25.272327 | 26 |
| CCGTAAG | 820 | 0.0 | 24.42021 | 28 |
| TCGGAAG | 380 | 0.0 | 24.275797 | 28 |
| GACCGTA | 825 | 0.0 | 24.271149 | 26 |
| CGTAAGA | 835 | 0.0 | 24.25098 | 29 |
| ACCGTAA | 830 | 0.0 | 24.124937 | 27 |
| AATGCCG | 1250 | 0.0 | 23.758453 | 18 |
| TCTCGTA | 830 | 0.0 | 23.582804 | 38 |
| CTCGTAT | 840 | 0.0 | 23.569895 | 39 |
| TATCTCG | 835 | 0.0 | 23.44159 | 36 |
| AGACCGT | 865 | 0.0 | 23.408882 | 25 |
| ATCGGAA | 385 | 0.0 | 23.375103 | 27 |
| CGTATGC | 855 | 0.0 | 23.158413 | 41 |
| TGCCGAG | 1285 | 0.0 | 22.93625 | 20 |
| ATGCCGA | 1310 | 0.0 | 22.842026 | 19 |
| TCGTATG | 870 | 0.0 | 22.758137 | 40 |
| GAGACCG | 895 | 0.0 | 22.121466 | 24 |