Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391194.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1137479 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1828 | 0.16070626358816295 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1312 | 0.11534278874599004 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1233 | 0.10839760558216899 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 260 | 0.0 | 39.80668 | 15 |
| CCGATGA | 265 | 0.0 | 39.05561 | 17 |
| TATGCCG | 135 | 0.0 | 38.334045 | 43 |
| GCCGATG | 270 | 0.0 | 38.33236 | 16 |
| CGTCATA | 270 | 0.0 | 38.33236 | 24 |
| CGATGAC | 275 | 0.0 | 37.635406 | 18 |
| TAAGCCG | 275 | 0.0 | 37.635406 | 13 |
| GTCGGAA | 30 | 1.1400848E-4 | 37.499046 | 27 |
| ATGACGT | 280 | 0.0 | 36.963345 | 20 |
| GATGACG | 295 | 0.0 | 35.083855 | 19 |
| TGACGTC | 300 | 0.0 | 34.499123 | 21 |
| GATCGGA | 210 | 0.0 | 34.284843 | 26 |
| GACGTCA | 305 | 0.0 | 33.933563 | 22 |
| TCGGAAG | 240 | 0.0 | 33.74914 | 28 |
| AAGCCGA | 310 | 0.0 | 33.38625 | 14 |
| ACGTCAT | 315 | 0.0 | 32.856308 | 23 |
| AGATCGG | 215 | 0.0 | 32.441036 | 25 |
| TTCGGTA | 195 | 0.0 | 32.30687 | 22 |
| CGGTATT | 205 | 0.0 | 31.82846 | 24 |
| TGCCGTC | 170 | 0.0 | 31.765297 | 45 |