Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378229.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 873645 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5080 | 0.5814718793102461 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCCGTC | 2696 | 0.30859216272055584 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCC | 2496 | 0.2856995690469241 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 425 | 0.0 | 37.057266 | 43 |
| ATGCCGT | 425 | 0.0 | 37.057266 | 44 |
| TGCCGTC | 435 | 0.0 | 36.205376 | 45 |
| GATCGGA | 630 | 0.0 | 34.284275 | 26 |
| AGATCGG | 640 | 0.0 | 33.74858 | 25 |
| ATCGGAA | 635 | 0.0 | 33.660004 | 27 |
| TCGGAAG | 685 | 0.0 | 32.188427 | 28 |
| CGAGATC | 665 | 0.0 | 32.141506 | 23 |
| GAGATCG | 680 | 0.0 | 31.432507 | 24 |
| CCGAGAT | 695 | 0.0 | 30.754107 | 22 |
| AATGCCG | 1410 | 0.0 | 26.807386 | 18 |
| ATGCCGA | 1415 | 0.0 | 26.71266 | 19 |
| TGCCGAG | 1440 | 0.0 | 25.93641 | 20 |
| GCCGAGA | 1515 | 0.0 | 24.50392 | 21 |
| GAATGCC | 1645 | 0.0 | 23.11453 | 17 |
| ATGCCCG | 70 | 2.70291E-5 | 22.499056 | 12 |
| GGAATGC | 1725 | 0.0 | 22.172983 | 16 |
| CGGAAGA | 1030 | 0.0 | 21.18843 | 29 |
| AGGAATG | 1835 | 0.0 | 20.966421 | 15 |
| CGTATGC | 755 | 0.0 | 20.860052 | 41 |