Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378361.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 740878 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2806 | 0.37873981951144453 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCATTAATCTCGTATGCC | 2102 | 0.2837174271607471 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCATTAATCTCGTATGCCGTC | 2097 | 0.28304255221507457 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 325 | 0.0 | 38.073097 | 43 |
| ATGCCGT | 340 | 0.0 | 36.393402 | 44 |
| TGCCGTC | 340 | 0.0 | 36.393402 | 45 |
| GATCGGA | 365 | 0.0 | 32.051575 | 26 |
| AGATCGG | 370 | 0.0 | 31.618444 | 25 |
| ATCGGAA | 380 | 0.0 | 30.78638 | 27 |
| TCGGAAG | 420 | 0.0 | 29.461327 | 28 |
| CGAGATC | 435 | 0.0 | 26.89385 | 23 |
| GAGATCG | 445 | 0.0 | 26.289492 | 24 |
| ATGCCGA | 1000 | 0.0 | 25.197468 | 19 |
| AATGCCG | 1010 | 0.0 | 24.947989 | 18 |
| TGCCGAG | 1020 | 0.0 | 24.923964 | 20 |
| CCGAGAT | 480 | 0.0 | 24.841253 | 22 |
| GAATGCC | 1120 | 0.0 | 22.69861 | 17 |
| CGCCATT | 600 | 0.0 | 22.49774 | 29 |
| GCCGAGA | 1095 | 0.0 | 22.395008 | 21 |
| AGACCGC | 555 | 0.0 | 22.295057 | 25 |
| CTCGTAT | 560 | 0.0 | 22.095993 | 39 |
| CGTATGC | 575 | 0.0 | 21.519577 | 41 |
| TCTCGTA | 575 | 0.0 | 21.519577 | 38 |