Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378326.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 645732 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTACAATCTCGTATGCCGTC | 1397 | 0.21634362243159702 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1363 | 0.21107828015337632 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTACAATCTCGTATGCC | 973 | 0.1506817069620214 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 135 | 0.0 | 29.996902 | 43 |
| ATGCCGT | 140 | 0.0 | 28.925587 | 44 |
| TGCCGTC | 165 | 0.0 | 24.542921 | 45 |
| AGATCGG | 195 | 0.0 | 23.074541 | 25 |
| CGCTTAC | 240 | 0.0 | 22.497679 | 32 |
| CCGCTTA | 235 | 0.0 | 22.019003 | 31 |
| ATCTCGT | 245 | 0.0 | 21.120268 | 40 |
| ATCGGAA | 225 | 0.0 | 20.997831 | 27 |
| GAACCGC | 65 | 4.2384127E-4 | 20.767086 | 11 |
| AATGCCG | 445 | 0.0 | 20.728197 | 18 |
| CGTATGC | 250 | 0.0 | 20.697863 | 44 |
| TCTCGTA | 250 | 0.0 | 20.697863 | 41 |
| GATCGGA | 220 | 0.0 | 20.452433 | 26 |
| TCGGAAG | 210 | 0.0 | 20.355042 | 28 |
| TCGTATG | 255 | 0.0 | 20.292025 | 43 |
| GACCGCT | 270 | 0.0 | 19.997934 | 29 |
| CTCGTAT | 260 | 0.0 | 19.90179 | 42 |
| AGACCGC | 260 | 0.0 | 19.90179 | 28 |
| ACCGCTT | 265 | 0.0 | 19.526287 | 30 |
| ACCGCTC | 70 | 6.983784E-4 | 19.283724 | 13 |