Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378236.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 635787 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5067 | 0.7969650213043047 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATAACATCTCGTATGCCGTC | 3356 | 0.527849735839204 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATAACATCTCGTATGCC | 2990 | 0.4702832866982181 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 658 | 0.10349378014964132 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 365 | 0.0 | 42.537518 | 43 |
| ATGCCGT | 385 | 0.0 | 39.158855 | 44 |
| TGCCGTC | 385 | 0.0 | 39.158855 | 45 |
| GATCGGA | 660 | 0.0 | 36.133457 | 26 |
| AGATCGG | 665 | 0.0 | 35.86178 | 25 |
| ATCGGAA | 665 | 0.0 | 35.52346 | 27 |
| TCGGAAG | 705 | 0.0 | 33.82707 | 28 |
| CCGAGAT | 790 | 0.0 | 30.187445 | 22 |
| CGAGATC | 795 | 0.0 | 29.997587 | 23 |
| GAGATCG | 800 | 0.0 | 29.8101 | 24 |
| AATGCCG | 1440 | 0.0 | 27.34155 | 18 |
| ATGCCGA | 1460 | 0.0 | 26.812912 | 19 |
| TGCCGAG | 1460 | 0.0 | 26.812912 | 20 |
| GCCGAGA | 1530 | 0.0 | 25.43913 | 21 |
| GAATGCC | 1595 | 0.0 | 24.684536 | 17 |
| GGAATGC | 1675 | 0.0 | 23.371256 | 16 |
| CGGAAGA | 1035 | 0.0 | 23.041626 | 29 |
| ACCGCGC | 60 | 2.4671684E-4 | 22.498192 | 9 |
| AGGAATG | 1790 | 0.0 | 21.99544 | 15 |
| TCTCGTA | 695 | 0.0 | 21.688904 | 38 |