Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378129.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 668888 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1635 | 0.2444355407781273 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTCAAATCTCGTATGCCGTC | 1462 | 0.21857171903218475 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTCAAATCTCGTATGCC | 1252 | 0.18717632847352622 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1079 | 0.1613125067275837 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 215 | 0.0 | 42.901134 | 13 |
| TGACGTC | 225 | 0.0 | 40.994415 | 21 |
| GCCGATG | 230 | 0.0 | 40.10323 | 16 |
| AAGCCGA | 230 | 0.0 | 40.10323 | 14 |
| ATGACGT | 230 | 0.0 | 40.10323 | 20 |
| AGCCGAT | 235 | 0.0 | 39.24997 | 15 |
| CGTCATA | 235 | 0.0 | 39.24997 | 24 |
| TCGGTAT | 185 | 0.0 | 38.913616 | 23 |
| ATTCGGT | 190 | 0.0 | 37.889576 | 21 |
| AATTCGG | 190 | 0.0 | 37.889576 | 20 |
| GGCGGTC | 185 | 0.0 | 37.700386 | 35 |
| CCGATGA | 245 | 0.0 | 37.647934 | 17 |
| GCGGTCT | 195 | 0.0 | 36.92081 | 36 |
| CGGGGAA | 195 | 0.0 | 36.91805 | 15 |
| GAATTCG | 195 | 0.0 | 36.91805 | 19 |
| AGGCGGT | 190 | 0.0 | 36.70827 | 34 |
| GACGTCA | 255 | 0.0 | 36.17154 | 22 |
| CGATGAC | 255 | 0.0 | 36.17154 | 18 |
| TCGGGGA | 200 | 0.0 | 35.995094 | 14 |
| TGCCGTC | 195 | 0.0 | 35.777733 | 45 |