Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378547.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 396319 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGACATCTCGTATGCC | 2748 | 0.6933808371539089 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGAGCGG | 310 | 0.0 | 41.375492 | 5 |
| GACCGGA | 315 | 0.0 | 40.7136 | 29 |
| ATCTCGT | 310 | 0.0 | 40.644478 | 40 |
| CGTATGC | 310 | 0.0 | 40.644478 | 44 |
| CTCGTAT | 310 | 0.0 | 40.644478 | 42 |
| AGACCGG | 310 | 0.0 | 40.644478 | 28 |
| TCGTATG | 310 | 0.0 | 40.644478 | 43 |
| GAGCGGT | 320 | 0.0 | 40.07745 | 6 |
| CCGAGAC | 320 | 0.0 | 40.07745 | 25 |
| GCGGTTC | 315 | 0.0 | 39.999325 | 8 |
| CGGAAGA | 310 | 0.0 | 39.928757 | 1 |
| AAGAGCG | 325 | 0.0 | 39.46585 | 4 |
| CATCTCG | 320 | 0.0 | 39.374336 | 39 |
| TCTCGTA | 320 | 0.0 | 39.374336 | 41 |
| AGCGGTT | 330 | 0.0 | 38.862984 | 7 |
| CGGTTCA | 325 | 0.0 | 38.768578 | 9 |
| CCGGATG | 325 | 0.0 | 38.768578 | 31 |
| GAGACCG | 325 | 0.0 | 38.768578 | 27 |
| CGGATGA | 325 | 0.0 | 38.768578 | 32 |
| ACCGGAT | 330 | 0.0 | 38.18118 | 30 |