Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378514.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1107834 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAAGAATCTCGTATGCC | 3853 | 0.347795788899781 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAAGAATCTCGTATGCCGTC | 3344 | 0.3018502772075961 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1549 | 0.13982239216344686 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 470 | 0.0 | 37.83319 | 43 |
| ATGCCGT | 495 | 0.0 | 35.922424 | 44 |
| TGCCGTC | 515 | 0.0 | 34.527378 | 45 |
| CGGAAGA | 865 | 0.0 | 24.731325 | 1 |
| TGAACCG | 75 | 1.6994072E-6 | 23.996992 | 10 |
| CGTTAAG | 950 | 0.0 | 21.787725 | 32 |
| ACCGTTA | 965 | 0.0 | 21.6822 | 30 |
| CCGTTAA | 955 | 0.0 | 21.673655 | 31 |
| GACCGTT | 965 | 0.0 | 21.449059 | 29 |
| TCTCGTA | 950 | 0.0 | 21.31504 | 41 |
| TCGTATG | 960 | 0.0 | 21.101582 | 43 |
| AGACCGT | 1005 | 0.0 | 21.042137 | 28 |
| CTCGTAT | 965 | 0.0 | 20.986563 | 42 |
| CGTATGC | 970 | 0.0 | 20.884039 | 44 |
| AGATCGG | 310 | 0.0 | 20.320032 | 25 |
| ATCTCGT | 1000 | 0.0 | 20.247461 | 40 |
| GAGACCG | 1045 | 0.0 | 20.236698 | 27 |
| GATCGGA | 315 | 0.0 | 19.997492 | 26 |
| GTATGCC | 1025 | 0.0 | 19.763432 | 45 |
| ATCGGAA | 320 | 0.0 | 19.685032 | 27 |