Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378364.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 973766 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4740 | 0.48676992213735126 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTTAATCTCGTATGCCGTC | 3513 | 0.3607642903942015 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTTAATCTCGTATGCC | 3305 | 0.3394039225029422 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 440 | 0.0 | 38.348335 | 44 |
| TATGCCG | 450 | 0.0 | 37.496147 | 43 |
| TGCCGTC | 490 | 0.0 | 34.435238 | 45 |
| GATCGGA | 625 | 0.0 | 33.476562 | 26 |
| AGATCGG | 630 | 0.0 | 33.210873 | 25 |
| ATCGGAA | 635 | 0.0 | 32.94937 | 27 |
| TCGGAAG | 680 | 0.0 | 32.092293 | 28 |
| CCGAGAT | 720 | 0.0 | 29.371984 | 22 |
| CGAGATC | 725 | 0.0 | 28.859104 | 23 |
| GAGATCG | 790 | 0.0 | 26.769402 | 24 |
| ATGCCGA | 1510 | 0.0 | 25.924488 | 19 |
| TGCCGAG | 1510 | 0.0 | 25.924488 | 20 |
| AATGCCG | 1540 | 0.0 | 25.419468 | 18 |
| GCCGAGA | 1615 | 0.0 | 23.681778 | 21 |
| GAATGCC | 1690 | 0.0 | 23.296423 | 17 |
| CCGTCGT | 795 | 0.0 | 21.790215 | 28 |
| CGTCGTT | 805 | 0.0 | 21.51953 | 29 |
| GGAATGC | 1830 | 0.0 | 21.514183 | 16 |
| GTCGTTA | 810 | 0.0 | 21.386692 | 30 |
| AGACCGT | 815 | 0.0 | 21.255486 | 25 |