Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378151.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1308191 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCC | 1499 | 0.11458571416559202 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GATCGGA | 155 | 0.0 | 39.190186 | 18 |
| CGTATGC | 155 | 0.0 | 36.288593 | 44 |
| CTCGTAT | 175 | 0.0 | 34.712635 | 42 |
| GACCGAG | 175 | 0.0 | 32.14133 | 29 |
| TCTCGTA | 180 | 0.0 | 31.248514 | 41 |
| TCGTATG | 180 | 0.0 | 31.248514 | 43 |
| AGATCGG | 195 | 0.0 | 31.151173 | 17 |
| ATCGGAA | 195 | 0.0 | 31.151173 | 19 |
| ATCTCGT | 185 | 0.0 | 30.40396 | 40 |
| AGACCGA | 190 | 0.0 | 29.603855 | 28 |
| ACCGAGA | 200 | 0.0 | 29.24861 | 30 |
| TCGGAAG | 230 | 0.0 | 27.388956 | 20 |
| CATCTCG | 210 | 0.0 | 26.78444 | 39 |
| CGAGACA | 210 | 0.0 | 26.78444 | 32 |
| GAGACCG | 235 | 0.0 | 23.935032 | 27 |
| GTATGCC | 235 | 0.0 | 23.935032 | 45 |
| CGTACAA | 50 | 0.0022598724 | 22.508394 | 3 |
| CCGAGAT | 300 | 0.0 | 20.9982 | 14 |
| GCGGTTC | 270 | 0.0 | 20.832344 | 28 |
| GAGCGGT | 290 | 0.0 | 20.171453 | 26 |