Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391297.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 799892 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4422 | 0.552824631325229 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2833 | 0.3541728133297995 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCAGTAATCTCGTATGCCGTC | 1963 | 0.24540813009756318 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCAGTAATCTCGTATGCC | 1846 | 0.23078115545598654 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 858 | 0.10726448070489515 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCATA | 420 | 0.0 | 43.924664 | 24 |
| GACGTCA | 415 | 0.0 | 43.91176 | 22 |
| AGCCGAT | 435 | 0.0 | 43.444416 | 15 |
| TGACGTC | 430 | 0.0 | 42.903164 | 21 |
| GCCGATG | 430 | 0.0 | 42.903164 | 16 |
| TAAGCCG | 440 | 0.0 | 42.43941 | 13 |
| CCGATGA | 435 | 0.0 | 42.410023 | 17 |
| ACGTCAT | 435 | 0.0 | 42.410023 | 23 |
| CGATGAC | 430 | 0.0 | 42.379955 | 18 |
| AAGCCGA | 445 | 0.0 | 41.962563 | 14 |
| ATGACGT | 440 | 0.0 | 41.416775 | 20 |
| TTCCTCG | 280 | 0.0 | 40.99131 | 10 |
| GATGACG | 445 | 0.0 | 40.951416 | 19 |
| TCGGTAT | 375 | 0.0 | 40.79637 | 23 |
| TTCGGTA | 370 | 0.0 | 40.73962 | 22 |
| ATTCGGT | 375 | 0.0 | 40.196423 | 21 |
| CGGTATT | 375 | 0.0 | 40.196423 | 24 |
| GCGGTCT | 380 | 0.0 | 39.667522 | 36 |
| GGCGGTC | 380 | 0.0 | 39.667522 | 35 |
| TCCTCGG | 300 | 0.0 | 39.008724 | 11 |