Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378156.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 633538 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCC | 1199 | 0.18925463034577247 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 145 | 0.0 | 37.239094 | 44 |
| CCGCATG | 140 | 0.0 | 36.964935 | 31 |
| CTCGTAT | 140 | 0.0 | 36.962017 | 42 |
| GACCGCA | 140 | 0.0 | 36.962017 | 29 |
| TCTCGTA | 140 | 0.0 | 36.962017 | 41 |
| CGCATGA | 150 | 0.0 | 36.00063 | 32 |
| ATCTCGT | 150 | 0.0 | 34.500603 | 40 |
| AGACCGC | 150 | 0.0 | 34.49788 | 28 |
| TCGTATG | 160 | 0.0 | 33.745266 | 43 |
| ACCGCAT | 155 | 0.0 | 33.385044 | 30 |
| ATCGGAA | 70 | 8.1308826E-10 | 32.138348 | 19 |
| GTATGCC | 180 | 0.0 | 29.998158 | 45 |
| AGATCGG | 75 | 1.7025741E-9 | 29.99579 | 17 |
| GAGACCG | 175 | 0.0 | 29.56728 | 27 |
| GATCGGA | 80 | 3.3942342E-9 | 28.121054 | 18 |
| CCGAGAC | 190 | 0.0 | 27.235168 | 25 |
| CGGTTCA | 210 | 0.0 | 26.781956 | 9 |
| GCGGTTC | 200 | 0.0 | 25.871368 | 8 |
| TCGGAAG | 90 | 1.1896191E-8 | 24.998465 | 20 |
| AAGAGCG | 210 | 0.0 | 24.653019 | 4 |