Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378335.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1007003 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4901 | 0.48669169803863543 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTGTATCTCGTATGCC | 3627 | 0.3601776757368151 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTGTATCTCGTATGCCGTC | 3543 | 0.35183609184878295 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 460 | 0.0 | 38.636913 | 43 |
| TGCCGTC | 470 | 0.0 | 38.293518 | 45 |
| ATGCCGT | 490 | 0.0 | 36.27139 | 44 |
| GATCGGA | 770 | 0.0 | 31.554855 | 26 |
| ATCGGAA | 770 | 0.0 | 31.554855 | 27 |
| AGATCGG | 790 | 0.0 | 30.755999 | 25 |
| TCGGAAG | 820 | 0.0 | 30.179497 | 28 |
| CCGAGAT | 900 | 0.0 | 27.496876 | 22 |
| GAGATCG | 910 | 0.0 | 26.947487 | 24 |
| CGAGATC | 955 | 0.0 | 25.913284 | 23 |
| AATGCCG | 1820 | 0.0 | 23.733566 | 18 |
| TGCCGAG | 1820 | 0.0 | 23.609953 | 20 |
| ATGCCGA | 1830 | 0.0 | 23.603872 | 19 |
| GCCGAGA | 1900 | 0.0 | 22.260628 | 21 |
| GAATGCC | 2000 | 0.0 | 22.047495 | 17 |
| GGAATGC | 2080 | 0.0 | 21.091354 | 16 |
| CTCGTAT | 855 | 0.0 | 20.787111 | 39 |
| TCTCGTA | 855 | 0.0 | 20.787111 | 38 |
| CGTATGC | 865 | 0.0 | 20.546799 | 41 |
| CGGAAGA | 1220 | 0.0 | 20.468987 | 29 |