Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378215.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1071345 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6435 | 0.6006468504543354 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCCGTC | 3499 | 0.32659880804036046 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCC | 3085 | 0.2879557938852564 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 460 | 0.0 | 38.152016 | 43 |
| TGCCGTC | 460 | 0.0 | 37.662888 | 45 |
| ATGCCGT | 490 | 0.0 | 35.356995 | 44 |
| GATCGGA | 795 | 0.0 | 34.80955 | 26 |
| AGATCGG | 805 | 0.0 | 34.377132 | 25 |
| ATCGGAA | 820 | 0.0 | 33.748283 | 27 |
| TCGGAAG | 895 | 0.0 | 32.42852 | 28 |
| GAGATCG | 940 | 0.0 | 29.439995 | 24 |
| CCGAGAT | 945 | 0.0 | 29.284225 | 22 |
| CGAGATC | 1000 | 0.0 | 27.89858 | 23 |
| AATGCCG | 1775 | 0.0 | 26.364857 | 18 |
| ATGCCGA | 1785 | 0.0 | 26.217155 | 19 |
| TGCCGAG | 1825 | 0.0 | 25.51925 | 20 |
| GAATGCC | 1880 | 0.0 | 24.892353 | 17 |
| GCCGAGA | 1880 | 0.0 | 23.934954 | 21 |
| CGGAAGA | 1250 | 0.0 | 23.21882 | 29 |
| GGAATGC | 2045 | 0.0 | 22.993942 | 16 |
| GGTCGGA | 50 | 0.0022651793 | 22.498856 | 26 |
| GTCGGAA | 50 | 0.0022651793 | 22.498856 | 27 |
| CGAGTGA | 820 | 0.0 | 21.401352 | 29 |