FastQCFastQC Report
Mon 6 Jun 2016
ERR1391365.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391365.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences805811
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA702.7123684E-522.48852218
ATCGGAA702.7123684E-522.48852219
AGATCGG702.713669E-522.48712517
CACCCGG750.001114102317.989713
GCGGTTC952.8276944E-416.57151628
CGGTTCA952.8276944E-416.57151629
TCGGAAG952.8290332E-416.57048820
CGGCTAA952.8303725E-416.5694617
CCCGGCT1552.0772495E-715.95860515
GAGCGGT1251.3856417E-414.392652526
CCGAGGT950.005247546414.2616851
CGAGGTG950.005256230514.2581322
CGGAAGA1150.001205868613.68866421
CCGAGAC1352.6604778E-413.32735845
AGAGCGG1200.00166203413.11830225
AGCGGTT1250.002259149412.59357127
CCGGCTA1250.002260202512.59278916
GGACTAC1801.6346177E-512.5418753
ATGCCGA1454.8640696E-412.4082342
AAGAGCG1558.5194723E-411.60769824