Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378527.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 291900 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATACTATCTCGTATGCC | 1404 | 0.4809866392600205 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 205 | 0.0 | 43.901268 | 42 |
| TATCTCG | 205 | 0.0 | 43.901268 | 39 |
| AGACCGC | 200 | 0.0 | 43.87383 | 28 |
| CGTATGC | 210 | 0.0 | 42.856003 | 44 |
| CGCATAC | 210 | 0.0 | 42.856003 | 32 |
| TCGTATG | 210 | 0.0 | 42.856003 | 43 |
| CCGCATA | 210 | 0.0 | 42.856003 | 31 |
| GAGACCG | 205 | 0.0 | 42.803734 | 27 |
| ATCTCGT | 215 | 0.0 | 41.85935 | 40 |
| GACCGCA | 210 | 0.0 | 41.784603 | 29 |
| ACCGCAT | 220 | 0.0 | 40.908 | 30 |
| TCTCGTA | 220 | 0.0 | 40.908 | 41 |
| GTATGCC | 230 | 0.0 | 39.12939 | 45 |
| CGAGACC | 235 | 0.0 | 37.339428 | 26 |
| GCATACT | 250 | 0.0 | 36.899017 | 33 |
| AGAGCGG | 250 | 0.0 | 36.00521 | 5 |
| GCGGTTC | 255 | 0.0 | 35.293175 | 8 |
| CGGTTCA | 255 | 0.0 | 35.293175 | 9 |
| AGCGGTT | 255 | 0.0 | 35.293175 | 7 |
| GAGCGGT | 255 | 0.0 | 35.293175 | 6 |