Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378354.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 998933 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3348 | 0.3351576131732559 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCAGTTATCTCGTATGCC | 3276 | 0.32794992256737937 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCAGTTATCTCGTATGCCGTC | 2590 | 0.2592766481836119 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 265 | 0.0 | 40.74914 | 44 |
| TATGCCG | 280 | 0.0 | 38.56615 | 43 |
| ATCGGAA | 500 | 0.0 | 34.64526 | 27 |
| GATCGGA | 505 | 0.0 | 34.30224 | 26 |
| TGCCGTC | 315 | 0.0 | 34.281025 | 45 |
| AGATCGG | 505 | 0.0 | 33.856754 | 25 |
| TCGGAAG | 550 | 0.0 | 32.722794 | 28 |
| CCGAGAT | 540 | 0.0 | 32.078945 | 22 |
| CGAGATC | 565 | 0.0 | 30.659523 | 23 |
| GAGATCG | 600 | 0.0 | 28.87105 | 24 |
| AATGCCG | 1090 | 0.0 | 26.005615 | 18 |
| ATGCCGA | 1090 | 0.0 | 26.005615 | 19 |
| TGCCGAG | 1125 | 0.0 | 25.196552 | 20 |
| GCCGAGA | 1180 | 0.0 | 23.640833 | 21 |
| TCTCGTA | 595 | 0.0 | 22.307873 | 41 |
| AGACCGT | 625 | 0.0 | 21.956995 | 28 |
| GAATGCC | 1300 | 0.0 | 21.804708 | 17 |
| GAGACCG | 630 | 0.0 | 21.782734 | 27 |
| CGTCAGT | 620 | 0.0 | 21.771215 | 32 |
| CGTATGC | 610 | 0.0 | 21.759317 | 44 |