Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378574.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 264126 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCTGAATCTCGTATGCC | 1553 | 0.5879769503948873 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 150 | 0.0 | 40.4983 | 42 |
| TCGTATG | 150 | 0.0 | 40.4983 | 43 |
| CGTATGC | 155 | 0.0 | 39.1919 | 44 |
| GACCGAG | 155 | 0.0 | 39.1919 | 29 |
| TCTCGTA | 155 | 0.0 | 39.1919 | 41 |
| AGACCGA | 155 | 0.0 | 39.1919 | 28 |
| ACCGAGC | 160 | 0.0 | 37.967155 | 30 |
| CCGAGCT | 160 | 0.0 | 37.967155 | 31 |
| CGAGCTG | 160 | 0.0 | 37.967155 | 32 |
| ATCTCGT | 165 | 0.0 | 36.816635 | 40 |
| GAGACCG | 165 | 0.0 | 36.816635 | 27 |
| AATCTCG | 165 | 0.0 | 36.816635 | 39 |
| GTATGCC | 170 | 0.0 | 35.73379 | 45 |
| CCGAGAC | 190 | 0.0 | 31.972342 | 25 |
| CGAGACC | 200 | 0.0 | 30.37372 | 26 |
| GCGGTTC | 195 | 0.0 | 29.99874 | 8 |
| CGGTTCA | 195 | 0.0 | 29.99874 | 9 |
| GAGCGGT | 195 | 0.0 | 29.99874 | 6 |
| CGGAAGA | 200 | 0.0 | 29.259848 | 1 |
| AAGAGCG | 200 | 0.0 | 29.259848 | 4 |