Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378238.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 766724 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4323 | 0.5638274007335103 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACAAATCTCGTATGCC | 2990 | 0.3899708369634966 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACAAATCTCGTATGCCGTC | 2944 | 0.3839712856255967 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 370 | 0.0 | 34.058544 | 43 |
| ATGCCGT | 370 | 0.0 | 34.058544 | 44 |
| TGCCGTC | 370 | 0.0 | 34.058544 | 45 |
| AGATCGG | 600 | 0.0 | 33.37287 | 25 |
| GATCGGA | 610 | 0.0 | 32.825775 | 26 |
| ATCGGAA | 620 | 0.0 | 32.659206 | 27 |
| GTCGGAA | 30 | 0.0051478078 | 29.998087 | 27 |
| CGAGATC | 685 | 0.0 | 29.560158 | 23 |
| TCGGAAG | 720 | 0.0 | 29.373127 | 28 |
| CCGAGAT | 690 | 0.0 | 29.345957 | 22 |
| GAGATCG | 685 | 0.0 | 29.231712 | 24 |
| CACCGCG | 55 | 4.164627E-6 | 28.634539 | 8 |
| ACCGCGC | 60 | 8.190955E-6 | 26.248327 | 9 |
| CCGCGCC | 60 | 8.190955E-6 | 26.248327 | 10 |
| CGGGATT | 95 | 7.421477E-10 | 26.050968 | 14 |
| ACGGGAT | 115 | 9.094947E-12 | 25.433159 | 13 |
| ATGCCGA | 1410 | 0.0 | 23.934643 | 19 |
| TGCCGAG | 1420 | 0.0 | 23.76609 | 20 |
| AATGCCG | 1430 | 0.0 | 23.599894 | 18 |
| GCCGAGA | 1440 | 0.0 | 22.654804 | 21 |