Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378166.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1153924 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTAGCAATCTCGTATGCC | 1615 | 0.13995722421927267 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGGTAG | 210 | 0.0 | 40.71303 | 31 |
| TCTCGTA | 210 | 0.0 | 40.711266 | 41 |
| TGCGAAA | 30 | 1.14071314E-4 | 37.495594 | 21 |
| CGGTAGC | 235 | 0.0 | 36.38186 | 32 |
| CGTATGC | 235 | 0.0 | 36.38028 | 44 |
| CTCGTAT | 235 | 0.0 | 36.38028 | 42 |
| GACCGGT | 225 | 0.0 | 35.99577 | 29 |
| ACCGGTA | 240 | 0.0 | 35.620815 | 30 |
| AGACCGG | 235 | 0.0 | 34.464035 | 28 |
| ATCTCGT | 260 | 0.0 | 32.883602 | 40 |
| TCGTATG | 275 | 0.0 | 32.72343 | 43 |
| GATCGGA | 170 | 0.0 | 31.759596 | 18 |
| AATCTCG | 280 | 0.0 | 31.338322 | 39 |
| ATCGGAA | 175 | 0.0 | 30.852182 | 19 |
| AGATCGG | 180 | 0.0 | 29.995174 | 17 |
| ATTACCG | 30 | 0.0051513156 | 29.995174 | 11 |
| GAGACCG | 285 | 0.0 | 29.207096 | 27 |
| TCGGAAG | 205 | 0.0 | 26.33837 | 20 |
| GTATGCC | 350 | 0.0 | 25.71238 | 45 |
| GCGGTTC | 360 | 0.0 | 24.99598 | 8 |