Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378207.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 912310 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5357 | 0.5871907575275948 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTATGATCTCGTATGCCGTC | 3144 | 0.3446197016365051 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTATGATCTCGTATGCC | 2078 | 0.22777345419868247 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 350 | 0.0 | 38.570866 | 43 |
| ATGCCGT | 390 | 0.0 | 35.191795 | 44 |
| TGCCGTC | 395 | 0.0 | 34.176716 | 45 |
| TCGGAAG | 715 | 0.0 | 33.670837 | 28 |
| GATCGGA | 705 | 0.0 | 33.191006 | 26 |
| ATCGGAA | 715 | 0.0 | 33.041473 | 27 |
| AGATCGG | 710 | 0.0 | 32.957264 | 25 |
| CCGAGAT | 860 | 0.0 | 28.255402 | 22 |
| ATGCCGA | 1410 | 0.0 | 27.44641 | 19 |
| TGCCGAG | 1400 | 0.0 | 27.32103 | 20 |
| AATGCCG | 1425 | 0.0 | 26.999605 | 18 |
| CGAGATC | 910 | 0.0 | 26.455656 | 23 |
| GAGATCG | 920 | 0.0 | 25.678972 | 24 |
| GAATGCC | 1520 | 0.0 | 25.31213 | 17 |
| GCCGAGA | 1545 | 0.0 | 24.465662 | 21 |
| GGAATGC | 1655 | 0.0 | 23.655243 | 16 |
| CGGAAGA | 1030 | 0.0 | 23.373446 | 29 |
| AGGAATG | 1790 | 0.0 | 21.87119 | 15 |
| CGTCTAT | 630 | 0.0 | 21.428259 | 29 |
| CCGTCTA | 630 | 0.0 | 21.428259 | 28 |