FastQCFastQC Report
Mon 6 Jun 2016
ERR1391286.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391286.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences716788
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA41980.5856682868574808No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA27710.386585712930462No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTAGAATCTCGTATGCCGTC16780.234099901226025Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTAGAATCTCGTATGCC16210.2261477591700754Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT9560.1333727685173301Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG5050.042.7665113
CGTCATA5150.041.9390224
AGCCGAT5200.041.5328615
GATGACG5250.041.14017519
CGATGAC5250.041.14017518
GCCGATG5250.041.13730616
AAGCCGA5250.041.13730614
GCGGTCT3800.040.84975436
GACGTCA5300.040.7520622
ATGACGT5400.040.41403620
TGACGTC5350.040.37120421
ACGTCAT5350.040.37120423
CCGATGA5350.040.36838517
CGGTATT3850.040.3220524
TATGCCG2300.040.10328743
AGGCGGT3900.039.80232234
GGCGGTC3900.039.80232235
TGCCGTC2400.038.4376845
TCGGTAT4100.038.41213223
TTCGGTA4050.038.33083722