Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378485.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 642681 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAGAATCTCGTATGCC | 3983 | 0.6197475886170588 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAGAATCTCGTATGCCGTC | 3541 | 0.5509731888759742 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1743 | 0.27120764422785176 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 785 | 0.12214457872568195 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 400 | 0.0 | 38.258934 | 44 |
| TATGCCG | 410 | 0.0 | 37.325787 | 43 |
| TGCCGTC | 430 | 0.0 | 34.54295 | 45 |
| CGGAAGA | 800 | 0.0 | 22.242983 | 1 |
| GTATGCC | 825 | 0.0 | 21.004904 | 45 |
| AGCTCCG | 55 | 0.0039364523 | 20.452953 | 35 |
| AGATCGG | 330 | 0.0 | 20.451363 | 25 |
| TCTCGTA | 840 | 0.0 | 20.358728 | 41 |
| TCGTATG | 845 | 0.0 | 20.241411 | 43 |
| CTCGTAT | 845 | 0.0 | 20.23826 | 42 |
| AGACCGT | 840 | 0.0 | 20.087723 | 28 |
| CGTATGC | 865 | 0.0 | 20.033579 | 44 |
| CCGTGCA | 850 | 0.0 | 19.851397 | 31 |
| CGTGCAG | 845 | 0.0 | 19.702608 | 32 |
| GACCGTG | 870 | 0.0 | 19.653643 | 29 |
| AATCTCG | 875 | 0.0 | 19.541338 | 39 |
| ATCTCGT | 880 | 0.0 | 19.430305 | 40 |
| ACCGTGC | 885 | 0.0 | 19.320532 | 30 |
| ATCGGAA | 350 | 0.0 | 19.284214 | 27 |
| GAGACCG | 895 | 0.0 | 19.104658 | 27 |