Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391274.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 730909 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4348 | 0.5948756958800616 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2837 | 0.3881468144461212 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCCGTC | 1244 | 0.17019902614415747 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCC | 839 | 0.11478857149111586 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACGTCA | 465 | 0.0 | 43.05869 | 22 |
| ACGTCAT | 470 | 0.0 | 42.60062 | 23 |
| CGTCATA | 470 | 0.0 | 42.60062 | 24 |
| TAAGCCG | 475 | 0.0 | 42.15219 | 13 |
| TCCTCGG | 285 | 0.0 | 41.077988 | 11 |
| GGCGGTC | 340 | 0.0 | 41.02386 | 35 |
| TGACGTC | 490 | 0.0 | 40.861816 | 21 |
| CGATGAC | 490 | 0.0 | 40.861816 | 18 |
| CGGTATT | 350 | 0.0 | 40.494522 | 24 |
| GCCGATG | 495 | 0.0 | 40.449074 | 16 |
| ATGACGT | 495 | 0.0 | 40.449074 | 20 |
| ATTCGGT | 345 | 0.0 | 40.42931 | 21 |
| TTCGGTA | 345 | 0.0 | 40.42931 | 22 |
| AGCCGAT | 500 | 0.0 | 40.04458 | 15 |
| CCGATGA | 500 | 0.0 | 40.04458 | 17 |
| AAGCCGA | 500 | 0.0 | 40.04458 | 14 |
| TCGGGGA | 355 | 0.0 | 39.924175 | 14 |
| TCGGTAT | 355 | 0.0 | 39.924175 | 23 |
| AGGCGGT | 350 | 0.0 | 39.851753 | 34 |
| AATTCGG | 350 | 0.0 | 39.851753 | 20 |