Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378473.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 918115 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGACATCTCGTATGCCGTC | 5476 | 0.5964394438605186 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGACATCTCGTATGCC | 4025 | 0.4383982398719115 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2452 | 0.2670689401654477 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1192 | 0.1298312302925015 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 595 | 0.0 | 38.211452 | 43 |
| ATGCCGT | 605 | 0.0 | 37.954002 | 44 |
| TGCCGTC | 595 | 0.0 | 37.835182 | 45 |
| CGTATGC | 930 | 0.0 | 24.677061 | 41 |
| CTCGTAT | 930 | 0.0 | 24.675718 | 39 |
| TCGTATG | 940 | 0.0 | 24.413208 | 40 |
| ATCTCGT | 945 | 0.0 | 24.284039 | 37 |
| TCTCGTA | 945 | 0.0 | 24.284039 | 38 |
| ACCGGAT | 950 | 0.0 | 23.9181 | 27 |
| CGGATGA | 960 | 0.0 | 23.9033 | 29 |
| GACCGGA | 945 | 0.0 | 23.806583 | 26 |
| GTATGCC | 985 | 0.0 | 23.758587 | 42 |
| AGACCGG | 975 | 0.0 | 23.304817 | 25 |
| ATCGGAA | 495 | 0.0 | 23.178957 | 27 |
| CATCTCG | 995 | 0.0 | 23.063736 | 36 |
| CCGGATG | 995 | 0.0 | 23.062479 | 28 |
| GGATGAC | 1025 | 0.0 | 23.045935 | 30 |
| GATCGGA | 515 | 0.0 | 22.278803 | 26 |
| GAGACCG | 1030 | 0.0 | 22.060383 | 24 |
| TCGGAAG | 560 | 0.0 | 21.693748 | 28 |