Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378462.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 963255 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACTAATCTCGTATGCCGTC | 3335 | 0.3462219246201681 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACTAATCTCGTATGCC | 2563 | 0.26607699934077683 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1853 | 0.19236858360454917 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 530 | 0.0 | 39.05989 | 43 |
| TGCCGTC | 580 | 0.0 | 35.69266 | 45 |
| ATGCCGT | 585 | 0.0 | 35.387596 | 44 |
| CGTATGC | 775 | 0.0 | 26.71054 | 41 |
| ACCGTCA | 770 | 0.0 | 26.589006 | 27 |
| GACCGTC | 785 | 0.0 | 26.079584 | 26 |
| CTCGTAT | 795 | 0.0 | 26.037226 | 39 |
| TCGTATG | 795 | 0.0 | 26.037226 | 40 |
| CGTCACT | 795 | 0.0 | 26.035873 | 29 |
| GTATGCC | 810 | 0.0 | 25.83417 | 42 |
| CCGTCAC | 795 | 0.0 | 25.752874 | 28 |
| TCTCGTA | 805 | 0.0 | 25.712446 | 38 |
| ATCTCGT | 810 | 0.0 | 25.553728 | 37 |
| ATGCCGA | 1205 | 0.0 | 25.016361 | 19 |
| AGACCGT | 825 | 0.0 | 24.813831 | 25 |
| ATCGGAA | 385 | 0.0 | 24.5437 | 27 |
| GAGACCG | 840 | 0.0 | 24.370726 | 24 |
| AATCTCG | 855 | 0.0 | 24.208796 | 36 |
| AATGCCG | 1260 | 0.0 | 23.924376 | 18 |
| TGCCGAG | 1260 | 0.0 | 23.924376 | 20 |