Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378318.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 476522 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTCAAATCTCGTATGCC | 3834 | 0.8045798515073807 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3341 | 0.7011218789478765 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTCAAATCTCGTATGCCGTC | 3115 | 0.6536948976122823 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 613 | 0.12864044052530627 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 405 | 0.0 | 38.886803 | 43 |
| TGCCGTC | 410 | 0.0 | 38.412575 | 45 |
| TCTTCCG | 25 | 0.0021064281 | 35.99807 | 18 |
| ATGCCGT | 440 | 0.0 | 35.793533 | 44 |
| ATCGGAA | 480 | 0.0 | 32.342014 | 27 |
| TTCCGAT | 35 | 2.8188017E-4 | 32.141136 | 20 |
| AGATCGG | 485 | 0.0 | 32.008595 | 25 |
| GATCGGA | 490 | 0.0 | 31.681974 | 26 |
| TCGGAAG | 515 | 0.0 | 31.454622 | 28 |
| CCGAGAT | 515 | 0.0 | 30.144014 | 22 |
| GGGGGCG | 30 | 0.005137703 | 30.007835 | 6 |
| AACCGCT | 30 | 0.0051456196 | 29.998388 | 12 |
| CCGATGA | 30 | 0.0051456196 | 29.998388 | 22 |
| ACTCGAC | 30 | 0.0051456196 | 29.998388 | 40 |
| GAGATCG | 530 | 0.0 | 29.290882 | 24 |
| CGAGATC | 535 | 0.0 | 29.017134 | 23 |
| AATGCCG | 1280 | 0.0 | 24.959599 | 18 |
| ATGCCGA | 1310 | 0.0 | 24.388006 | 19 |
| TGCCGAG | 1310 | 0.0 | 24.388006 | 20 |
| GCCGAGA | 1335 | 0.0 | 23.594238 | 21 |