FastQCFastQC Report
Mon 6 Jun 2016
ERR1378530.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378530.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences342484
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTATCAATCTCGTATGCC22470.6560890435757583Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCTATC2400.043.12262332
CCGCTAT2450.042.2425731
AATCTCG2450.042.2425739
CTCGTAT2500.041.39771742
ATCTCGT2550.040.58640
TCTCGTA2550.040.58641
TCGTATG2550.040.58643
ACCGCTA2600.039.80549630
GTATGCC2600.039.80549645
AGACCGC2600.039.80549628
GAGACCG2650.039.0544527
CGTATGC2700.038.3312244
CCGAGAC2700.038.3312225
GACCGCT2750.037.6342929
GCTATCA2800.036.9622533
GAGCGGT2800.036.1587226
AAGAGCG2900.035.7033234
AGAGCGG2850.035.539925
CGAGACC3000.035.24805526
GCGGTTC2900.034.911878