Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378172.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 810162 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAGCATCTCGTATGCC | 1068 | 0.13182548675450095 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 125 | 0.0 | 43.196327 | 44 |
| TCGTATG | 135 | 0.0 | 41.66312 | 43 |
| CATCTCG | 135 | 0.0 | 39.99907 | 39 |
| TCTCGTA | 135 | 0.0 | 39.996597 | 41 |
| ATCTCGT | 145 | 0.0 | 37.24051 | 40 |
| CTCGTAT | 155 | 0.0 | 36.28724 | 42 |
| CGCCAAA | 25 | 0.0021069834 | 35.99916 | 38 |
| AGATCGG | 105 | 0.0 | 34.2828 | 17 |
| ACCGAGT | 165 | 0.0 | 34.08801 | 30 |
| CTTCGTA | 60 | 6.4319465E-9 | 33.74713 | 7 |
| GACCGAG | 170 | 0.0 | 33.085423 | 29 |
| AGACCGA | 165 | 0.0 | 32.72449 | 28 |
| CGTATAA | 50 | 1.98198E-6 | 31.497322 | 10 |
| GATCGGA | 120 | 0.0 | 29.99745 | 18 |
| GAGACCG | 180 | 0.0 | 29.99745 | 27 |
| GTATGCC | 185 | 0.0 | 29.186707 | 45 |
| TTCGTAT | 70 | 2.8863724E-8 | 28.92611 | 8 |
| TCGTATA | 55 | 4.1656986E-6 | 28.633928 | 9 |
| CGAGTAG | 190 | 0.0 | 28.420391 | 32 |
| ATCGGAA | 130 | 0.0 | 27.689953 | 19 |