Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378359.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 858532 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4499 | 0.5240340488182154 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTGTTATCTCGTATGCC | 3654 | 0.4256102276909888 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTGTTATCTCGTATGCCGTC | 3188 | 0.3713315287024828 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 420 | 0.0 | 39.64132 | 44 |
| TATGCCG | 430 | 0.0 | 38.719425 | 43 |
| TGCCGTC | 440 | 0.0 | 37.83944 | 45 |
| AGATCGG | 595 | 0.0 | 34.78654 | 25 |
| GATCGGA | 600 | 0.0 | 34.121685 | 26 |
| ATCGGAA | 610 | 0.0 | 33.562317 | 27 |
| TCGGAAG | 645 | 0.0 | 32.08991 | 28 |
| GAGATCG | 695 | 0.0 | 30.4287 | 24 |
| CCGAGAT | 705 | 0.0 | 29.997086 | 22 |
| CGAGATC | 710 | 0.0 | 29.785841 | 23 |
| ACGCCGG | 45 | 0.0012269962 | 24.997572 | 37 |
| ATGCCGA | 1550 | 0.0 | 24.675024 | 19 |
| AATGCCG | 1575 | 0.0 | 24.283358 | 18 |
| TGCCGAG | 1575 | 0.0 | 24.283358 | 20 |
| GCCGAGA | 1630 | 0.0 | 23.187933 | 21 |
| CGGTTGT | 885 | 0.0 | 22.624922 | 32 |
| GAATGCC | 1705 | 0.0 | 22.431839 | 17 |
| TCGTATG | 900 | 0.0 | 22.249136 | 43 |
| TCTCGTA | 890 | 0.0 | 22.24503 | 41 |
| CCGGTTG | 890 | 0.0 | 22.24503 | 31 |