Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378344.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 803536 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4772 | 0.5938750721809601 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTATTATCTCGTATGCC | 4408 | 0.5485752971864359 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTATTATCTCGTATGCCGTC | 4174 | 0.5194540132613847 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 824 | 0.10254674339419764 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 555 | 0.0 | 38.913967 | 43 |
| ATGCCGT | 560 | 0.0 | 38.56652 | 44 |
| TGCCGTC | 555 | 0.0 | 38.508614 | 45 |
| ATCGGAA | 725 | 0.0 | 32.271755 | 27 |
| AGATCGG | 725 | 0.0 | 31.96145 | 25 |
| GATCGGA | 750 | 0.0 | 31.495993 | 26 |
| TCGGAAG | 800 | 0.0 | 29.808706 | 28 |
| GAGATCG | 790 | 0.0 | 29.33171 | 24 |
| CGAGATC | 805 | 0.0 | 28.785158 | 23 |
| CCGAGAT | 820 | 0.0 | 28.2586 | 22 |
| ACCGCTC | 50 | 7.161964E-5 | 26.996565 | 13 |
| AATGCCG | 1755 | 0.0 | 26.150518 | 18 |
| ATGCCGA | 1800 | 0.0 | 25.371769 | 19 |
| CTTCCGA | 45 | 0.0012271433 | 24.996819 | 19 |
| TTCCGAT | 45 | 0.0012271433 | 24.996819 | 20 |
| TGCCGAG | 1835 | 0.0 | 24.887842 | 20 |
| GCCGAGA | 1840 | 0.0 | 24.331142 | 21 |
| GGAATGC | 1940 | 0.0 | 23.772747 | 16 |
| CCGCGTA | 915 | 0.0 | 23.357681 | 28 |
| CGCGTAT | 915 | 0.0 | 23.357681 | 29 |