FastQCFastQC Report
Mon 6 Jun 2016
ERR1391253.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391253.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences696408
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA40700.5844275195000631No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA29500.42360225614869446No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTATCATCTCGTATGCCGTC7500.10769548885136299Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG3950.044.42428613
CGTCATA4200.043.38690624
TGACGTC4250.042.8764721
AGCCGAT4100.042.79900715
ACGTCAT4300.042.37790723
AAGCCGA4150.042.2833514
TTCCTCG3250.042.25227710
GACGTCA4400.041.41477222
ATGACGT4400.041.41477220
CCGATGA4350.040.8564617
TCGGGGA3750.040.79440314
CTCGGGG3400.040.3621113
GGCGGTC3800.040.25763335
GATGACG4550.040.04944619
GCCGATG4450.039.9383416
TCCTCGG3450.039.80286811
CCTCGGG3450.039.77715312
GCGGTCT3850.039.73480636
AGGCGGT3850.039.73480634
GAATTCG3850.039.73480619