Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378495.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 569929 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTGAATCTCGTATGCC | 2565 | 0.4500560596144432 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTGAATCTCGTATGCCGTC | 2075 | 0.3640804380896568 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1007 | 0.17668867525604065 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 290 | 0.0 | 39.57491 | 43 |
| ATGCCGT | 295 | 0.0 | 38.90073 | 44 |
| TGCCGTC | 305 | 0.0 | 38.36305 | 45 |
| CGGGCGG | 35 | 2.8190235E-4 | 32.142044 | 22 |
| GATCGGA | 205 | 0.0 | 26.340796 | 26 |
| ATCGGAA | 215 | 0.0 | 25.11564 | 27 |
| TCGGAAG | 240 | 0.0 | 22.49943 | 28 |
| AGATCGG | 240 | 0.0 | 21.561954 | 25 |
| CGGAAGA | 495 | 0.0 | 21.378101 | 1 |
| AATGCCG | 780 | 0.0 | 21.343739 | 18 |
| CGTATGC | 540 | 0.0 | 21.251328 | 41 |
| CTCGTAT | 545 | 0.0 | 21.054512 | 39 |
| TCTCGTA | 545 | 0.0 | 21.054512 | 38 |
| CGGTTCA | 825 | 0.0 | 21.003153 | 6 |
| ATGCCGA | 800 | 0.0 | 20.810146 | 19 |
| TGCCGAG | 800 | 0.0 | 20.810146 | 20 |
| CCTTCGT | 65 | 4.2153147E-4 | 20.783293 | 1 |
| CCGAGAT | 250 | 0.0 | 20.699474 | 22 |
| GCGGTTC | 830 | 0.0 | 20.603697 | 5 |
| TCGTATG | 560 | 0.0 | 20.490553 | 40 |