Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378505.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 875242 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATTAAGATCTCGTATGCCGTC | 2684 | 0.3066580442894651 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTAAGATCTCGTATGCC | 2440 | 0.27878004026315006 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1322 | 0.15104393984749362 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 295 | 0.0 | 35.85178 | 43 |
| TGCCGTC | 325 | 0.0 | 34.619564 | 45 |
| ATGCCGT | 310 | 0.0 | 34.11702 | 44 |
| GTCCGGT | 30 | 0.005149312 | 29.996763 | 20 |
| GATCGGA | 245 | 0.0 | 26.629778 | 26 |
| ATCGGAA | 235 | 0.0 | 25.848272 | 27 |
| TGACCGT | 45 | 0.0012270923 | 24.997303 | 26 |
| AGATCGG | 270 | 0.0 | 22.497572 | 25 |
| TCGGAAG | 280 | 0.0 | 22.497572 | 28 |
| TCCGGTC | 55 | 0.0039382596 | 20.45234 | 21 |
| CCGATTA | 520 | 0.0 | 20.334345 | 28 |
| CGTATGC | 530 | 0.0 | 19.950678 | 41 |
| AATGCCG | 840 | 0.0 | 19.81929 | 18 |
| CTCGTAT | 550 | 0.0 | 19.634245 | 39 |
| TCTCGTA | 545 | 0.0 | 19.401575 | 38 |
| CGGAAGA | 535 | 0.0 | 19.369158 | 1 |
| AGCGGTT | 900 | 0.0 | 19.255625 | 4 |
| CGATTAA | 550 | 0.0 | 19.226295 | 29 |
| ATGCCGA | 890 | 0.0 | 19.21141 | 19 |
| GACCGAT | 540 | 0.0 | 19.165693 | 29 |