Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378442.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 871842 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATAGAATCTCGTATGCCGTC | 2823 | 0.32379720178656224 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATAGAATCTCGTATGCC | 2446 | 0.28055542173926007 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1606 | 0.18420768900787068 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 365 | 0.0 | 36.375153 | 43 |
| TGCCGTC | 400 | 0.0 | 33.19232 | 45 |
| ATGCCGT | 405 | 0.0 | 32.782543 | 44 |
| ATCGGAA | 380 | 0.0 | 26.051935 | 27 |
| GATCGGA | 385 | 0.0 | 25.713596 | 26 |
| TCGGAAG | 400 | 0.0 | 25.311823 | 28 |
| AGATCGG | 405 | 0.0 | 24.440987 | 25 |
| ATGCCGA | 1010 | 0.0 | 22.719559 | 19 |
| CCGTATA | 575 | 0.0 | 22.303751 | 28 |
| AATGCCG | 1045 | 0.0 | 22.173897 | 18 |
| TGCCGAG | 1045 | 0.0 | 21.958616 | 20 |
| TCTCGTA | 610 | 0.0 | 21.761711 | 38 |
| GACCGTA | 590 | 0.0 | 21.736706 | 26 |
| ACCGTAT | 590 | 0.0 | 21.736706 | 27 |
| CGTATGC | 620 | 0.0 | 21.410717 | 41 |
| CGTATAG | 610 | 0.0 | 21.39287 | 29 |
| GAGATCG | 475 | 0.0 | 21.312773 | 24 |
| ATCTCGT | 645 | 0.0 | 20.92967 | 37 |
| CTCGTAT | 645 | 0.0 | 20.580843 | 39 |
| TCGTATG | 645 | 0.0 | 20.580843 | 40 |