Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378330.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 492113 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACTCTATCTCGTATGCC | 3738 | 0.7595816408020108 | Illumina Paired End PCR Primer 2 (97% over 38bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3708 | 0.7534854799609033 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAACTCTATCTCGTATGCCGTC | 3375 | 0.6858180946246086 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 596 | 0.12111039537667162 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 415 | 0.0 | 39.033764 | 44 |
| TATGCCG | 425 | 0.0 | 38.644703 | 43 |
| TGCCGTC | 445 | 0.0 | 36.40228 | 45 |
| ATCGGAA | 470 | 0.0 | 30.63643 | 27 |
| GATCGGA | 480 | 0.0 | 29.99817 | 26 |
| AGATCGG | 495 | 0.0 | 29.543655 | 25 |
| CCGAGAT | 520 | 0.0 | 29.421282 | 22 |
| GAGATCG | 510 | 0.0 | 29.115871 | 24 |
| TCGGAAG | 510 | 0.0 | 28.67472 | 28 |
| CGAGATC | 540 | 0.0 | 27.498322 | 23 |
| CCGAACT | 905 | 0.0 | 23.36874 | 31 |
| GACCGAA | 920 | 0.0 | 22.98773 | 29 |
| ACCGAAC | 920 | 0.0 | 22.98773 | 30 |
| TATCTCG | 925 | 0.0 | 22.86347 | 39 |
| CTCGTAT | 930 | 0.0 | 22.74055 | 42 |
| GTATGCC | 930 | 0.0 | 22.74055 | 45 |
| GAGACCG | 925 | 0.0 | 22.620241 | 27 |
| CGTATGC | 935 | 0.0 | 22.618942 | 44 |
| TCTCGTA | 935 | 0.0 | 22.618942 | 41 |
| ATCTCGT | 945 | 0.0 | 22.379587 | 40 |