Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378546.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 315332 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCC | 2332 | 0.7395380107315465 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GTATGCC | 335 | 0.0 | 42.984924 | 45 |
| TCTCGTA | 335 | 0.0 | 42.984924 | 41 |
| CTCGTAT | 340 | 0.0 | 42.352795 | 42 |
| CGCATGA | 340 | 0.0 | 42.352795 | 32 |
| ATCTCGT | 345 | 0.0 | 41.738987 | 40 |
| CGTATGC | 350 | 0.0 | 41.14271 | 44 |
| ACCGCAT | 350 | 0.0 | 41.14271 | 30 |
| CCGCATG | 350 | 0.0 | 41.14271 | 31 |
| GACCGCA | 355 | 0.0 | 40.563236 | 29 |
| TCGTATG | 355 | 0.0 | 40.563236 | 43 |
| AGACCGC | 350 | 0.0 | 40.499855 | 28 |
| GAGACCG | 355 | 0.0 | 39.929436 | 27 |
| GATCTCG | 365 | 0.0 | 39.451916 | 39 |
| CGAGACC | 375 | 0.0 | 37.79987 | 26 |
| AGCGGTT | 425 | 0.0 | 33.882233 | 7 |
| CGGTTCA | 430 | 0.0 | 33.488255 | 9 |
| GAGATCT | 430 | 0.0 | 33.488255 | 37 |
| CGGAAGA | 410 | 0.0 | 33.480804 | 1 |
| CCGAGAC | 425 | 0.0 | 33.352825 | 25 |
| GCGGTTC | 435 | 0.0 | 33.103333 | 8 |