Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391176.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 910670 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3058 | 0.33579672109545716 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2127 | 0.23356429881296187 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1240 | 0.13616348402824294 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCTGAATCTCGTATGCCGTC | 958 | 0.10519727233794897 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 400 | 0.0 | 42.74901 | 13 |
| TTCGGTA | 295 | 0.0 | 40.42279 | 22 |
| TCGGTAT | 295 | 0.0 | 40.42279 | 23 |
| GCGGTCT | 290 | 0.0 | 40.34389 | 36 |
| CCGATGA | 430 | 0.0 | 39.76652 | 17 |
| GGCGGTC | 300 | 0.0 | 39.749077 | 35 |
| CGGTATT | 300 | 0.0 | 39.749077 | 24 |
| ATGACGT | 425 | 0.0 | 39.70496 | 20 |
| AGCCGAT | 430 | 0.0 | 39.24328 | 15 |
| GACGTCA | 430 | 0.0 | 39.24328 | 22 |
| TGACGTC | 430 | 0.0 | 39.24328 | 21 |
| CGGGGAA | 305 | 0.0 | 39.097458 | 15 |
| AATTCGG | 305 | 0.0 | 39.097458 | 20 |
| GCCGATG | 435 | 0.0 | 38.792202 | 16 |
| GATGACG | 445 | 0.0 | 38.426075 | 19 |
| CGATGAC | 445 | 0.0 | 38.426075 | 18 |
| CGGTCTC | 305 | 0.0 | 38.359768 | 37 |
| TATGCCG | 135 | 0.0 | 38.33455 | 43 |
| AAGCCGA | 450 | 0.0 | 37.999123 | 14 |
| GAATTCG | 315 | 0.0 | 37.856262 | 19 |