Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391164.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 613068 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2950 | 0.48118642630181313 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1939 | 0.31627812901668334 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1631 | 0.2660390038299177 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGCAATCTCGTATGCCGTC | 1233 | 0.2011196147898765 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGCAATCTCGTATGCC | 653 | 0.1065134699576556 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 280 | 0.0 | 44.195225 | 15 |
| CGATGAC | 295 | 0.0 | 42.710705 | 18 |
| GCCGATG | 290 | 0.0 | 42.671257 | 16 |
| GATTCGG | 65 | 0.0 | 41.537334 | 11 |
| TAAGCCG | 300 | 0.0 | 41.248882 | 13 |
| AATTCGG | 285 | 0.0 | 40.262062 | 20 |
| ATCGGAA | 180 | 0.0 | 39.998913 | 27 |
| CCGATGA | 310 | 0.0 | 39.91827 | 17 |
| AAGCCGA | 310 | 0.0 | 39.91827 | 14 |
| TCGGTAT | 295 | 0.0 | 39.65994 | 23 |
| TTCGGTA | 290 | 0.0 | 39.56789 | 22 |
| ACGTCAT | 320 | 0.0 | 39.373928 | 23 |
| GATGACG | 315 | 0.0 | 39.284645 | 19 |
| AGATCGG | 185 | 0.0 | 38.917862 | 25 |
| TCGGAAG | 185 | 0.0 | 38.917862 | 28 |
| GCGGTCT | 300 | 0.0 | 38.248962 | 36 |
| ATTCGGT | 300 | 0.0 | 38.248962 | 21 |
| CGGTATT | 300 | 0.0 | 38.248962 | 24 |
| GAATTCG | 300 | 0.0 | 38.248962 | 19 |
| TGACGTC | 330 | 0.0 | 38.180782 | 21 |