Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391303.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 527108 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4006 | 0.7599960539396101 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2678 | 0.5080552751997692 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTAAGATCTCGTATGCC | 2142 | 0.4063683343830866 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATTAAGATCTCGTATGCCGTC | 2031 | 0.3853100313408258 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 979 | 0.18573043854390373 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 535 | 0.10149722637486057 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 375 | 0.0 | 44.99269 | 13 |
| ATGACGT | 380 | 0.0 | 44.400684 | 20 |
| GACGTCA | 385 | 0.0 | 43.824055 | 22 |
| GATGACG | 390 | 0.0 | 43.262207 | 19 |
| CGTCATA | 390 | 0.0 | 43.262207 | 24 |
| CCGATGA | 395 | 0.0 | 42.714584 | 17 |
| TGACGTC | 395 | 0.0 | 42.714584 | 21 |
| AAGCCGA | 395 | 0.0 | 42.714584 | 14 |
| AGCCGAT | 400 | 0.0 | 42.180653 | 15 |
| GCCGATG | 400 | 0.0 | 42.180653 | 16 |
| GAATTCG | 375 | 0.0 | 41.99318 | 19 |
| TATGCCG | 235 | 0.0 | 41.163532 | 43 |
| AATTCGG | 390 | 0.0 | 40.95489 | 20 |
| CGGTCTC | 390 | 0.0 | 40.95489 | 37 |
| GCGGTCT | 385 | 0.0 | 40.90245 | 36 |
| CGATGAC | 420 | 0.0 | 40.707676 | 18 |
| GGCGGTC | 395 | 0.0 | 40.436474 | 35 |
| CGGTATT | 395 | 0.0 | 40.436474 | 24 |
| AGGCGGT | 390 | 0.0 | 40.378063 | 34 |
| TGCCGTC | 240 | 0.0 | 40.325085 | 45 |