Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391168.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1182126 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3922 | 0.3317751238023696 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2709 | 0.22916338867430375 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 505 | 0.0 | 41.88032 | 13 |
| TGACGTC | 510 | 0.0 | 41.46973 | 21 |
| AGCCGAT | 505 | 0.0 | 41.434788 | 15 |
| GCCGATG | 500 | 0.0 | 41.39914 | 16 |
| CCGATGA | 505 | 0.0 | 40.98925 | 17 |
| CGATGAC | 505 | 0.0 | 40.98925 | 18 |
| GACGTCA | 520 | 0.0 | 40.672237 | 22 |
| GATGACG | 520 | 0.0 | 39.80687 | 19 |
| CGTCATA | 520 | 0.0 | 39.80687 | 24 |
| AAGCCGA | 535 | 0.0 | 39.531895 | 14 |
| ACGTCAT | 540 | 0.0 | 39.16586 | 23 |
| ATGACGT | 530 | 0.0 | 39.055798 | 20 |
| GGCGGTC | 415 | 0.0 | 38.49318 | 35 |
| GCGGTCT | 430 | 0.0 | 38.196884 | 36 |
| TCGGTAT | 420 | 0.0 | 38.034927 | 23 |
| TTCGGTA | 435 | 0.0 | 37.24061 | 22 |
| AGGCGGT | 435 | 0.0 | 36.723377 | 34 |
| CGGTCTC | 450 | 0.0 | 36.499245 | 37 |
| CGAAGTA | 25 | 0.0021073467 | 35.999256 | 39 |
| TCGGGGA | 450 | 0.0 | 35.999252 | 14 |