Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378461.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 796951 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTATGATCTCGTATGCCGTC | 4699 | 0.5896221976006053 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTATGATCTCGTATGCC | 2780 | 0.34882947634170736 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2367 | 0.2970069678060508 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1136 | 0.1425432680302804 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 580 | 0.0 | 40.739517 | 43 |
| ATGCCGT | 600 | 0.0 | 39.381535 | 44 |
| TGCCGTC | 625 | 0.0 | 37.806274 | 45 |
| ATCGGAA | 525 | 0.0 | 26.140633 | 27 |
| AGATCGG | 540 | 0.0 | 25.831135 | 25 |
| CCGTCTA | 920 | 0.0 | 25.677164 | 28 |
| TCTCGTA | 935 | 0.0 | 25.505854 | 38 |
| GATCGGA | 540 | 0.0 | 25.414505 | 26 |
| CTCGTAT | 930 | 0.0 | 25.401064 | 39 |
| CGTCTAT | 935 | 0.0 | 25.265234 | 29 |
| TCGTATG | 940 | 0.0 | 25.130842 | 40 |
| ACCGTCT | 940 | 0.0 | 25.130842 | 27 |
| TCGGAAG | 575 | 0.0 | 25.041348 | 28 |
| GTATGCC | 945 | 0.0 | 25.002579 | 42 |
| AGACCGT | 955 | 0.0 | 24.971697 | 25 |
| GACCGTC | 960 | 0.0 | 24.841639 | 26 |
| CGTATGC | 975 | 0.0 | 24.23175 | 41 |
| ATCTCGT | 975 | 0.0 | 24.228708 | 37 |
| ATGCCGA | 1595 | 0.0 | 23.838099 | 19 |
| AATGCCG | 1615 | 0.0 | 23.54289 | 18 |