Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378519.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 416137 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTATAATCTCGTATGCC | 2309 | 0.5548653448263432 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATCTCGT | 280 | 0.0 | 43.392857 | 40 |
| TCTCGTA | 280 | 0.0 | 43.392857 | 41 |
| ACCGAGT | 290 | 0.0 | 42.672413 | 30 |
| CGAGTAT | 285 | 0.0 | 42.631577 | 32 |
| AGACCGA | 295 | 0.0 | 41.94915 | 28 |
| CGTATGC | 290 | 0.0 | 41.89655 | 44 |
| AATCTCG | 290 | 0.0 | 41.89655 | 39 |
| GAGACCG | 300 | 0.0 | 41.25 | 27 |
| GACCGAG | 305 | 0.0 | 40.57377 | 29 |
| CTCGTAT | 300 | 0.0 | 40.5 | 42 |
| TGCCGAG | 315 | 0.0 | 39.285713 | 23 |
| CCGAGTA | 310 | 0.0 | 39.193546 | 31 |
| TCGTATG | 310 | 0.0 | 39.193546 | 43 |
| CCGAGAC | 325 | 0.0 | 38.76923 | 25 |
| ATGCCGA | 320 | 0.0 | 38.671875 | 22 |
| GTATGCC | 315 | 0.0 | 38.571426 | 45 |
| AGCGGTT | 325 | 0.0 | 38.07692 | 7 |
| GAGCGGT | 325 | 0.0 | 38.07692 | 6 |
| GCGGTTC | 330 | 0.0 | 37.5 | 8 |
| AATGCCG | 330 | 0.0 | 37.5 | 21 |