Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378464.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 767663 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATCTGATCTCGTATGCCGTC | 5511 | 0.7178931380045671 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATCTGATCTCGTATGCC | 3926 | 0.5114223298504682 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2275 | 0.2963539990855362 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1188 | 0.1547554069949965 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 745 | 0.0 | 40.48146 | 44 |
| TATGCCG | 760 | 0.0 | 39.682484 | 43 |
| TGCCGTC | 780 | 0.0 | 38.664986 | 45 |
| CGTAACA | 30 | 0.005148793 | 29.996918 | 14 |
| GACCGTA | 1130 | 0.0 | 26.47958 | 26 |
| CCGTATC | 1135 | 0.0 | 26.364647 | 28 |
| ACCGTAT | 1150 | 0.0 | 26.020758 | 27 |
| CGTATGC | 1160 | 0.0 | 25.99548 | 41 |
| TCTCGTA | 1155 | 0.0 | 25.906427 | 38 |
| CGTATCT | 1165 | 0.0 | 25.685728 | 29 |
| CTCGTAT | 1165 | 0.0 | 25.684055 | 39 |
| TCGTATG | 1175 | 0.0 | 25.656937 | 40 |
| AGACCGT | 1185 | 0.0 | 25.250568 | 25 |
| GTATGCC | 1195 | 0.0 | 25.234106 | 42 |
| CCCGTAA | 45 | 0.0012269183 | 24.99743 | 12 |
| GAGACCG | 1205 | 0.0 | 24.831474 | 24 |
| ATCTCGT | 1225 | 0.0 | 24.426062 | 37 |
| GTATCTG | 1280 | 0.0 | 23.378025 | 30 |
| CGAGACC | 1295 | 0.0 | 23.105732 | 23 |
| CCGAGAC | 1315 | 0.0 | 22.9254 | 22 |