Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378208.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 999094 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6493 | 0.6498887992521224 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTATCATCTCGTATGCCGTC | 3976 | 0.3979605522603479 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTATCATCTCGTATGCC | 2409 | 0.24111845331870677 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 450 | 0.0 | 36.502476 | 43 |
| ACGGTAC | 25 | 0.0021062752 | 36.00244 | 40 |
| ATGCCGT | 460 | 0.0 | 35.708942 | 44 |
| GATCGGA | 735 | 0.0 | 35.50906 | 26 |
| ATCGGAA | 735 | 0.0 | 35.202946 | 27 |
| AGATCGG | 755 | 0.0 | 34.56842 | 25 |
| TCGGAAG | 785 | 0.0 | 34.10718 | 28 |
| TGCCGTC | 500 | 0.0 | 33.75229 | 45 |
| GAGATCG | 875 | 0.0 | 29.82761 | 24 |
| CCGAGAT | 905 | 0.0 | 29.336071 | 22 |
| CGAGATC | 905 | 0.0 | 29.336071 | 23 |
| AATGCCG | 1525 | 0.0 | 28.917099 | 18 |
| ATGCCGA | 1535 | 0.0 | 28.435566 | 19 |
| TGCCGAG | 1555 | 0.0 | 28.069834 | 20 |
| GAATGCC | 1695 | 0.0 | 25.88412 | 17 |
| GCCGAGA | 1675 | 0.0 | 25.38724 | 21 |
| CGGAAGA | 1050 | 0.0 | 25.284899 | 29 |
| GGAATGC | 1775 | 0.0 | 24.717512 | 16 |
| CGTATGC | 695 | 0.0 | 23.634697 | 41 |
| TCTCGTA | 705 | 0.0 | 23.297121 | 38 |