FastQCFastQC Report
Mon 6 Jun 2016
ERR1391287.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391287.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences794260
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA43080.54239166016166No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA32410.4080527786870798No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACGTATCTCGTATGCCGTC18640.23468385667161887Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACGTATCTCGTATGCC16580.20874776521542066Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATGAC4500.043.49409518
TAAGCCG4500.043.49409513
CCGATGA4550.043.0161417
GCCGATG4550.043.0161416
AGCCGAT4500.042.99416415
GACGTCA4550.042.5243822
ACGTCAT4550.042.5243823
CGTCATA4550.042.5243824
TGACGTC4600.042.0621621
AGGCGGT3000.040.49705534
GGCGGTC3000.040.49705535
GATGACG4850.040.3553519
ATGACGT4800.040.3070320
CGGTATT3100.039.9164524
GCGGTCT3050.039.83316836
TTCGGTA3050.039.83316822
TCGGTAT3050.039.83316823
AAGCCGA4900.039.48443614
TGCCGTC2250.038.0020245
TCGGGGA3200.037.96359614