Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378516.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 385411 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATAGAATCTCGTATGCC | 2328 | 0.6040305025025233 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 315 | 0.0 | 42.140064 | 42 |
| GACCGTA | 305 | 0.0 | 42.051846 | 29 |
| ATCTCGT | 330 | 0.0 | 41.58815 | 40 |
| TCTCGTA | 325 | 0.0 | 41.535706 | 41 |
| AGCGGTT | 320 | 0.0 | 41.487007 | 7 |
| GAGCGGT | 320 | 0.0 | 41.487007 | 6 |
| AGAGCGG | 320 | 0.0 | 41.487007 | 5 |
| CGTATGC | 325 | 0.0 | 40.848743 | 44 |
| GCGGTTC | 320 | 0.0 | 40.783836 | 8 |
| GAGACCG | 325 | 0.0 | 40.15639 | 27 |
| AGACCGT | 325 | 0.0 | 40.15639 | 28 |
| CGGAAGA | 295 | 0.0 | 39.663532 | 1 |
| AAGAGCG | 335 | 0.0 | 39.63452 | 4 |
| TCGTATG | 335 | 0.0 | 39.62938 | 43 |
| CGTATAG | 330 | 0.0 | 39.547966 | 32 |
| CCGTATA | 325 | 0.0 | 39.46404 | 31 |
| AATCTCG | 345 | 0.0 | 39.12784 | 39 |
| GTATGCC | 340 | 0.0 | 39.046593 | 45 |
| CGGTTCA | 335 | 0.0 | 38.95264 | 9 |
| ACCGTAT | 335 | 0.0 | 38.28601 | 30 |