Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378582.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 290234 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTAAGATCTCGTATGCC | 2192 | 0.7552526581999351 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 240 | 0.0 | 43.124996 | 41 |
| GACCGAT | 235 | 0.0 | 43.085106 | 29 |
| ACCGATT | 235 | 0.0 | 43.085106 | 30 |
| CTCGTAT | 250 | 0.0 | 42.3 | 42 |
| CCGATTA | 240 | 0.0 | 42.187496 | 31 |
| AGACCGA | 245 | 0.0 | 41.32653 | 28 |
| CGTATGC | 255 | 0.0 | 40.588234 | 44 |
| TCGTATG | 255 | 0.0 | 40.588234 | 43 |
| CGATTAA | 250 | 0.0 | 40.499996 | 32 |
| ATCTCGT | 255 | 0.0 | 39.705883 | 40 |
| GAGACCG | 260 | 0.0 | 38.942307 | 27 |
| GTATGCC | 280 | 0.0 | 36.964287 | 45 |
| GATCTCG | 275 | 0.0 | 36.818184 | 39 |
| GCGGTTC | 295 | 0.0 | 35.847458 | 8 |
| CGGAAGA | 285 | 0.0 | 35.526318 | 1 |
| CGAGACC | 290 | 0.0 | 34.913795 | 26 |
| AGAGCGG | 305 | 0.0 | 34.67213 | 5 |
| CCGAGAC | 300 | 0.0 | 34.500004 | 25 |
| CGGTTCA | 310 | 0.0 | 34.112904 | 9 |
| GAGCGGT | 310 | 0.0 | 34.112904 | 6 |