Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378465.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 751617 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTCTAATCTCGTATGCCGTC | 4213 | 0.5605248417744676 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTCTAATCTCGTATGCC | 3838 | 0.5106324098576802 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2073 | 0.2758053636360008 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 901 | 0.1198748830854012 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 500 | 0.0 | 37.80626 | 44 |
| TATGCCG | 505 | 0.0 | 37.431942 | 43 |
| TGCCGTC | 505 | 0.0 | 37.431942 | 45 |
| GATCGGA | 410 | 0.0 | 24.14552 | 26 |
| ATCGGAA | 420 | 0.0 | 23.570627 | 27 |
| TCGGAAG | 455 | 0.0 | 23.240969 | 28 |
| AGATCGG | 430 | 0.0 | 23.022474 | 25 |
| GGGCGAC | 80 | 2.9733583E-6 | 22.499235 | 28 |
| CGGAAGA | 880 | 0.0 | 20.72745 | 1 |
| CGTGTCT | 945 | 0.0 | 20.713581 | 29 |
| TGCCGAG | 1470 | 0.0 | 20.355095 | 20 |
| CGTATGC | 940 | 0.0 | 20.345053 | 41 |
| AATGCCG | 1475 | 0.0 | 20.286095 | 18 |
| CTCGTAT | 945 | 0.0 | 20.237408 | 39 |
| ATGCCGA | 1480 | 0.0 | 20.217562 | 19 |
| CCGTGTC | 960 | 0.0 | 20.155563 | 28 |
| TCTCGTA | 950 | 0.0 | 20.130896 | 38 |
| AGACCGT | 955 | 0.0 | 20.025497 | 25 |
| TCGTATG | 955 | 0.0 | 20.025497 | 40 |
| ATCTCGT | 960 | 0.0 | 19.68683 | 37 |