Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378200.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 503729 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6718 | 1.333653611366429 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATCATATCTCGTATGCCGTC | 3460 | 0.6868772693253713 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATCATATCTCGTATGCC | 3148 | 0.624939203420887 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 933 | 0.1852186393874484 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 385 | 0.0 | 38.57007 | 44 |
| TATGCCG | 395 | 0.0 | 37.59361 | 43 |
| TGCCGTC | 400 | 0.0 | 37.123688 | 45 |
| ATCGGAA | 875 | 0.0 | 33.42739 | 27 |
| AGATCGG | 890 | 0.0 | 33.116806 | 25 |
| GATCGGA | 900 | 0.0 | 32.998837 | 26 |
| TCGGAAG | 900 | 0.0 | 32.998837 | 28 |
| GAGATCG | 900 | 0.0 | 32.748844 | 24 |
| CCGAGAT | 915 | 0.0 | 32.21198 | 22 |
| CGAGATC | 945 | 0.0 | 31.189377 | 23 |
| ACGCCCA | 40 | 6.162569E-4 | 28.124006 | 12 |
| TGCCGAG | 1665 | 0.0 | 27.161203 | 20 |
| AATGCCG | 1690 | 0.0 | 27.158804 | 18 |
| ATGCCGA | 1690 | 0.0 | 26.892542 | 19 |
| GCCGAGA | 1715 | 0.0 | 25.97576 | 21 |
| GAATGCC | 1775 | 0.0 | 25.731485 | 17 |
| CCGTCCA | 45 | 0.0012258501 | 24.999119 | 40 |
| GGAATGC | 1830 | 0.0 | 24.958136 | 16 |
| CGGAAGA | 1205 | 0.0 | 24.459719 | 29 |
| AGGAATG | 1935 | 0.0 | 23.720093 | 15 |