Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378579.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 357854 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCGTAATCTCGTATGCC | 2097 | 0.5859931703991013 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGAGCG | 280 | 0.0 | 44.196014 | 31 |
| ACCGAGC | 285 | 0.0 | 43.42065 | 30 |
| GAGCGTA | 285 | 0.0 | 43.42065 | 33 |
| CGAGCGT | 285 | 0.0 | 43.42065 | 32 |
| AGCGTAA | 280 | 0.0 | 43.392452 | 34 |
| GCGTAAT | 280 | 0.0 | 43.392452 | 35 |
| GAGACCG | 290 | 0.0 | 42.672012 | 27 |
| AGACCGA | 290 | 0.0 | 42.672012 | 28 |
| ATCTCGT | 285 | 0.0 | 42.631184 | 40 |
| CTCGTAT | 285 | 0.0 | 42.631184 | 42 |
| AATCTCG | 285 | 0.0 | 42.631184 | 39 |
| CGTAATC | 285 | 0.0 | 42.631184 | 36 |
| TCTCGTA | 290 | 0.0 | 41.89616 | 41 |
| GACCGAG | 305 | 0.0 | 40.573395 | 29 |
| CGTATGC | 305 | 0.0 | 39.835693 | 44 |
| GTATGCC | 305 | 0.0 | 39.835693 | 45 |
| GCGGTTC | 320 | 0.0 | 39.374634 | 8 |
| CGGTTCA | 325 | 0.0 | 38.76887 | 9 |
| CCGAGAC | 315 | 0.0 | 38.571068 | 25 |
| GAGCGGT | 325 | 0.0 | 38.07657 | 6 |