Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391312.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 681607 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3504 | 0.5140792274727225 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2736 | 0.401404328300619 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATAACAATCTCGTATGCCGTC | 1528 | 0.22417610147783107 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAACAATCTCGTATGCC | 1403 | 0.20583708794070485 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 728 | 0.10680641484022317 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 390 | 0.0 | 43.838295 | 15 |
| CGATGAC | 395 | 0.0 | 43.28973 | 18 |
| CGTCATA | 400 | 0.0 | 42.748604 | 24 |
| GCCGATG | 405 | 0.0 | 42.21465 | 16 |
| TTCGGTA | 385 | 0.0 | 42.07655 | 22 |
| TCGGTAT | 385 | 0.0 | 42.07655 | 23 |
| GACGTCA | 410 | 0.0 | 41.70596 | 22 |
| CGGTATT | 390 | 0.0 | 41.537106 | 24 |
| GCGGTCT | 375 | 0.0 | 41.392574 | 36 |
| ACGTCAT | 415 | 0.0 | 41.20348 | 23 |
| TAAGCCG | 415 | 0.0 | 41.19743 | 13 |
| AAGCCGA | 420 | 0.0 | 40.70698 | 14 |
| AATTCGG | 400 | 0.0 | 40.498676 | 20 |
| TCGGGGA | 385 | 0.0 | 40.317444 | 14 |
| GGCGGTC | 385 | 0.0 | 40.317444 | 35 |
| ATGACGT | 425 | 0.0 | 40.233982 | 20 |
| CCGATGA | 425 | 0.0 | 40.22808 | 17 |
| TGCCGTC | 180 | 0.0 | 40.010437 | 45 |
| ATGCCGT | 180 | 0.0 | 39.99283 | 44 |
| TATGCCG | 175 | 0.0 | 39.849995 | 43 |