FastQCFastQC Report
Mon 6 Jun 2016
ERR1378534.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378534.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences298907
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATGTATCTCGTATGCC24950.8347077853646787Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT4200.042.32079742
TCTCGTA4150.042.2885341
TCGTATG4250.041.82290643
GACCGTC4200.041.7850929
ACCGTCA4200.041.7850930
CGTCATG4200.041.7850932
CGTATGC4300.041.33659444
ATCTCGT4300.040.81334340
CCGTCAT4300.040.81334331
TATCTCG4300.040.81334339
GTATGCC4400.040.39712545
AGACCGT4350.040.3442328
CGGAAGA4250.040.241431
GAGACCG4250.040.23469527
AGCGGTT4500.039.9994057
GAGCGGT4550.039.5598536
GCGGTTC4600.039.1298528
CGGTTCA4600.039.1298529
AGAGCGG4600.039.1298525
AAGAGCG4650.038.715584