Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378479.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 865299 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCCGTC | 3429 | 0.3962792052227034 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCC | 2627 | 0.3035944800583382 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1627 | 0.18802749107533928 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 435 | 0.0 | 37.766964 | 43 |
| ATGCCGT | 520 | 0.0 | 31.59352 | 44 |
| TGCCGTC | 530 | 0.0 | 30.997416 | 45 |
| AGACCGT | 700 | 0.0 | 23.461332 | 25 |
| TAGACGA | 700 | 0.0 | 23.141281 | 31 |
| GACCGTA | 710 | 0.0 | 23.130892 | 26 |
| TCTCGTA | 715 | 0.0 | 22.970463 | 38 |
| ACCGTAG | 715 | 0.0 | 22.969137 | 27 |
| GTAGACG | 710 | 0.0 | 22.81535 | 30 |
| CGTAGAC | 710 | 0.0 | 22.81535 | 29 |
| CGTATGC | 725 | 0.0 | 22.658869 | 41 |
| CCGTAGA | 715 | 0.0 | 22.6558 | 28 |
| CTCGTAT | 730 | 0.0 | 22.49847 | 39 |
| ATCTCGT | 780 | 0.0 | 22.210026 | 37 |
| TCGTATG | 760 | 0.0 | 21.906404 | 40 |
| AGACGAT | 765 | 0.0 | 21.763226 | 32 |
| GAGACCG | 760 | 0.0 | 21.609123 | 24 |
| GACGATC | 775 | 0.0 | 21.192104 | 33 |
| ACGATCT | 795 | 0.0 | 20.94197 | 34 |
| AATGCCG | 1135 | 0.0 | 20.812357 | 18 |