FastQCFastQC Report
Mon 6 Jun 2016
ERR1378568.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378568.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences322701
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAGAATCTCGTATGCC20080.6222478393311456Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG2400.042.18749643
CGTATGC2400.041.24999644
CTCGTAT2400.041.24999642
AGACCGG2350.041.1702128
ATCTCGT2450.040.40816540
ACCGGCT2450.040.40816530
TCTCGTA2450.040.40816541
CGGCTAG2450.040.40816532
GAGACCG2400.040.31249627
GACCGGC2500.039.629
GCGGTTC2600.038.942318
AGCGGTT2600.038.942317
CGGAAGA2550.038.823531
CCGGCTA2550.038.8235331
ATGCCGA2650.038.20754622
GAGCGGT2600.038.0769276
AGAGCGG2600.038.0769275
AATGCCG2700.037.50000421
CGAGACC2600.037.2115426
CGGTTCA2750.036.8181849