FastQCFastQC Report
Mon 6 Jun 2016
ERR1391179.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391179.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1224138
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA42440.3466929382144824No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA28610.2337154797906772No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT15400.12580280981392622Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCCGAT3950.041.01210415
CCGATGA4050.039.9994617
GCCGATG4050.039.9994616
CGTCATA4100.039.51165824
CGATGAC4150.039.03561418
TAAGCCG4200.038.57090413
ACGTCAT4350.037.75810623
GACGTCA4400.037.32903722
ATGACGT4350.037.2408720
GATGACG4350.037.2408719
TATGCCG1350.036.66766443
TCGGTAT4550.036.5929123
CGGTATT4600.036.1951624
TTCGGTA4650.035.80596522
GATCGGA2000.034.87452326
TGACGTC4650.034.83823821
ATTCGGT4800.034.6870321
AAGCCGA4750.034.104814
AATTCGG4950.034.09044620
AGATCGG2050.034.02392625