FastQCFastQC Report
Mon 6 Jun 2016
ERR1378543.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378543.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences248005
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGCATATCTCGTATGCC28021.1298159311304208Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT3800.042.03947442
TCTCGTA3800.042.03947441
GCGGTTC3900.041.5384648
GAGCGGT3900.041.5384646
ATCTCGT3850.041.49350740
TCGTATG3850.041.49350743
CCGGAGC3800.041.44737231
CGGTTCA3950.041.012669
AGAGCGG3950.041.012665
CGTATGC3900.040.9615444
GACCGGA3850.040.90909229
AGACCGG3850.040.90909228
CGGAGCA3850.040.90909232
CGGAAGA3700.040.7432441
CGAGACC3950.040.4430426
ACCGGAG3900.040.38461730
AAGAGCG4050.040.04
TATCTCG4000.039.93750439
GAGCATA4000.039.93750434
AGCGGTT4100.039.5121967