FastQCFastQC Report
Mon 6 Jun 2016
ERR1378114.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378114.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500778
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGGCATCTCGTATGCCGTC21960.43851766651090907Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGGCATCTCGTATGCC14350.2865541217865002Illumina Paired End PCR Primer 2 (96% over 33bp)
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA14190.28335909325090164No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA8840.17652532659182313No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACGTCA1550.043.54287722
TAAGCCG1550.043.54287713
TGCCGTC2550.042.3687445
ATGACGT1650.042.2673820
TGACGTC1600.042.18216321
CGATGAC1600.042.18216318
CGTCATA1600.042.18216324
CCGATGA1650.040.90391517
AGCCGAT1700.039.70086315
GATGACG1700.039.70086319
CGGGGAA1250.039.59499415
GCCGATG1750.038.5665516
AAGCCGA1750.038.5665514
ATGCCGT2800.038.5665544
ACGTCAT1800.037.49525523
TTCGGTA1400.036.9596122
TCGGTAT1400.036.9596123
TCGGGGA1350.036.6620314
TATGCCG2950.036.6055443
AGGCGGT1450.035.68514334