FastQCFastQC Report
Mon 6 Jun 2016
ERR1378541.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378541.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423304
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTGTAATCTCGTATGCC22210.5246820252111958Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTCTG2900.044.22367531
TCTCGTA2850.044.2100641
CGTATGC2950.043.4741244
GACCGTC2950.043.4741229
ACCGTCT3000.042.7495530
ATCTCGT2950.042.7114240
GAGACCG3050.042.04873727
AGACCGT3050.042.04873728
CTCGTAT3000.041.9995642
TCGTATG3100.041.37053343
CGTCTGT3150.040.7138632
AATCTCG3150.040.7138639
GTATGCC3350.038.95481545
CGAGACC3350.038.2831826
AGAGCGG3500.037.2853245
CCGAGAC3450.037.17352325
CGGAAGA3300.036.8264921
AGCGGTT3550.036.7601747
GAGCGGT3600.036.249626
AAGAGCG3550.036.126384