Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378583.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 348251 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACAAATCTCGTATGCC | 1930 | 0.5541979778952537 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 230 | 0.0 | 42.06481 | 41 |
| ACCGATA | 225 | 0.0 | 41.999596 | 30 |
| GACCGAT | 220 | 0.0 | 41.931416 | 29 |
| GCGGTTC | 240 | 0.0 | 41.249607 | 8 |
| CTCGTAT | 235 | 0.0 | 41.16982 | 42 |
| GAGACCG | 230 | 0.0 | 41.086563 | 27 |
| CGATACA | 230 | 0.0 | 41.086563 | 32 |
| AGACCGA | 225 | 0.0 | 40.999603 | 28 |
| CGTATGC | 240 | 0.0 | 40.312115 | 44 |
| CGGTTCA | 240 | 0.0 | 40.312115 | 9 |
| CGGAAGA | 235 | 0.0 | 40.22393 | 1 |
| CCGATAC | 235 | 0.0 | 40.21238 | 31 |
| AGCGGTT | 250 | 0.0 | 39.59962 | 7 |
| GAGCGGT | 250 | 0.0 | 39.59962 | 6 |
| TCGTATG | 245 | 0.0 | 39.48942 | 43 |
| AGAGCGG | 255 | 0.0 | 38.82316 | 5 |
| ATCTCGT | 250 | 0.0 | 38.699627 | 40 |
| TGCCGAG | 245 | 0.0 | 38.57106 | 23 |
| AAGAGCG | 260 | 0.0 | 38.076557 | 4 |
| ATGCCGA | 255 | 0.0 | 37.940815 | 22 |