Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378328.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1098570 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2816 | 0.2563332332031641 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATCCAATCTCGTATGCC | 2700 | 0.2457740517217838 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATCCAATCTCGTATGCCGTC | 2250 | 0.20481170976815316 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 210 | 0.0 | 37.49602 | 45 |
| TATGCCG | 210 | 0.0 | 36.424706 | 43 |
| ATGCCGT | 210 | 0.0 | 36.424706 | 44 |
| ATCGGAA | 325 | 0.0 | 31.842772 | 27 |
| GATCGGA | 340 | 0.0 | 30.437944 | 26 |
| AGATCGG | 360 | 0.0 | 28.746944 | 25 |
| ACGCCCG | 90 | 3.965397E-10 | 27.497078 | 12 |
| CGTATCC | 510 | 0.0 | 26.908907 | 32 |
| CTCGTAT | 525 | 0.0 | 26.14008 | 42 |
| GACCGTA | 530 | 0.0 | 25.893475 | 29 |
| TCTCGTA | 530 | 0.0 | 25.893475 | 41 |
| TCGGAAG | 400 | 0.0 | 25.872252 | 28 |
| ACCGTAT | 540 | 0.0 | 25.413967 | 30 |
| AGACCGT | 545 | 0.0 | 25.180813 | 28 |
| ATCTCGT | 550 | 0.0 | 24.951895 | 40 |
| CCGTATC | 550 | 0.0 | 24.951895 | 31 |
| GAGACCG | 560 | 0.0 | 24.90807 | 27 |
| CGTATGC | 555 | 0.0 | 24.727102 | 44 |
| TCGTATG | 555 | 0.0 | 24.727102 | 43 |
| GAGATCG | 440 | 0.0 | 23.52023 | 24 |