Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378532.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 344214 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTCTATCTCGTATGCC | 1871 | 0.543557205691808 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 235 | 0.0 | 44.04056 | 44 |
| CCGTAGT | 235 | 0.0 | 44.04056 | 31 |
| CGTAGTC | 235 | 0.0 | 44.04056 | 32 |
| ATCTCGT | 240 | 0.0 | 43.12305 | 40 |
| TATCTCG | 240 | 0.0 | 43.12305 | 39 |
| TCGTATG | 240 | 0.0 | 43.12305 | 43 |
| ACCGTAG | 240 | 0.0 | 43.12305 | 30 |
| GACCGTA | 235 | 0.0 | 43.08316 | 29 |
| AGACCGT | 235 | 0.0 | 43.08316 | 28 |
| GAGACCG | 230 | 0.0 | 42.063316 | 27 |
| CTCGTAT | 250 | 0.0 | 41.39813 | 42 |
| TCTCGTA | 250 | 0.0 | 41.39813 | 41 |
| GTATGCC | 260 | 0.0 | 39.805893 | 45 |
| TAGTCTA | 270 | 0.0 | 38.331604 | 34 |
| CCGAGAC | 255 | 0.0 | 37.93946 | 25 |
| CGGTTCA | 275 | 0.0 | 37.634663 | 9 |
| GTAGTCT | 275 | 0.0 | 37.634663 | 33 |
| GCGGTTC | 270 | 0.0 | 37.5092 | 8 |
| ATGCCGA | 265 | 0.0 | 37.3568 | 22 |
| AAGAGCG | 275 | 0.0 | 36.82722 | 4 |