Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378141.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 986771 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGATCTATCTCGTATGCC | 1134 | 0.11492028038926966 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 145 | 0.0 | 38.792053 | 41 |
| CTCGTAT | 155 | 0.0 | 34.83777 | 42 |
| TCGTATG | 155 | 0.0 | 34.83777 | 43 |
| ATCTCGT | 150 | 0.0 | 34.49907 | 40 |
| AGAGCGG | 160 | 0.0 | 33.761063 | 5 |
| TATCTCG | 155 | 0.0 | 33.386196 | 39 |
| AGACCGT | 155 | 0.0 | 33.384502 | 28 |
| GAGCGGT | 165 | 0.0 | 32.738 | 6 |
| CCGTGAT | 170 | 0.0 | 31.763847 | 31 |
| ACCGTGA | 170 | 0.0 | 31.76224 | 30 |
| CGTATGC | 175 | 0.0 | 30.856308 | 44 |
| GCGGTTC | 175 | 0.0 | 30.854744 | 8 |
| AGCGGTT | 175 | 0.0 | 30.854744 | 7 |
| GAGACCG | 170 | 0.0 | 30.438812 | 27 |
| GTCCGGG | 30 | 0.0051475903 | 29.999191 | 45 |
| CGGTTCA | 180 | 0.0 | 29.99767 | 9 |
| CGTTAAG | 30 | 0.0051488657 | 29.99767 | 27 |
| GACCGTG | 180 | 0.0 | 28.747766 | 29 |
| GTATGCC | 195 | 0.0 | 27.691559 | 45 |
| CGGAAGA | 210 | 0.0 | 26.801289 | 1 |