FastQCFastQC Report
Mon 6 Jun 2016
ERR1391177.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391177.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1271535
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA25170.19794972218617657No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA16630.1307868049247563No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT14390.11317030203651492Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG2650.041.60242513
TGACGTC2750.040.90777221
CGATGAC2750.040.90777218
CCGATGA2800.040.17727317
CGTCATA2750.040.08961524
TCGGGGA2850.039.4724114
CGGTATT2850.039.4724124
GGCGGTC2800.039.37372635
TCGGTAT2850.038.6829623
CTCGGGG2400.038.43625613
GCGGTCT2950.038.1343636
TTCGGTA2950.038.1343622
AGGCGGT2900.038.01601434
GCCGATG2900.038.01601416
AAGCCGA2900.038.01601414
TCCTCGG2500.036.89880811
ACGTCAT3000.036.74881423
GATGACG3100.036.2891519
CCTCGGG2550.036.175312
AGCCGAT3050.036.1463715