Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391277.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 485751 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3887 | 0.800204219857499 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2638 | 0.5430765968572375 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGCAATCTCGTATGCCGTC | 2342 | 0.4821400264744694 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGCAATCTCGTATGCC | 2093 | 0.4308791953078841 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 995 | 0.20483745787450774 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 506 | 0.1041685966678401 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACGTCA | 400 | 0.0 | 44.43364 | 22 |
| TGACGTC | 405 | 0.0 | 43.88508 | 21 |
| CGTCATA | 405 | 0.0 | 43.88508 | 24 |
| CGATGAC | 400 | 0.0 | 43.871185 | 18 |
| TAAGCCG | 400 | 0.0 | 43.871185 | 13 |
| CCGATGA | 405 | 0.0 | 43.32957 | 17 |
| GCGGTCT | 335 | 0.0 | 42.98134 | 36 |
| GGCGGTC | 330 | 0.0 | 42.95081 | 35 |
| ACGTCAT | 415 | 0.0 | 42.827602 | 23 |
| GCCGATG | 410 | 0.0 | 42.801155 | 16 |
| TCGGTAT | 340 | 0.0 | 42.34926 | 23 |
| AGGCGGT | 335 | 0.0 | 42.309753 | 34 |
| AGCCGAT | 415 | 0.0 | 42.28548 | 15 |
| TGCCGTC | 310 | 0.0 | 42.110455 | 45 |
| ATGCCGT | 315 | 0.0 | 41.424973 | 44 |
| GATGACG | 430 | 0.0 | 41.333614 | 19 |
| AAGCCGA | 425 | 0.0 | 41.290527 | 14 |
| ATTCGGT | 350 | 0.0 | 41.13928 | 21 |
| TTCGGTA | 350 | 0.0 | 41.13928 | 22 |
| CGGGGAA | 355 | 0.0 | 40.559853 | 15 |