Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378481.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 679043 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGCGATCTCGTATGCCGTC | 3924 | 0.5778720935198507 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGCGATCTCGTATGCC | 3137 | 0.46197368944234757 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1914 | 0.2818672749737498 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 832 | 0.12252537762704277 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 440 | 0.0 | 39.89531 | 43 |
| TGCCGTC | 460 | 0.0 | 38.16073 | 45 |
| ATGCCGT | 475 | 0.0 | 36.95565 | 44 |
| ATCGGAA | 325 | 0.0 | 28.382618 | 27 |
| GATCGGA | 340 | 0.0 | 27.130445 | 26 |
| TCGGAAG | 350 | 0.0 | 26.355288 | 28 |
| CCGAGAT | 385 | 0.0 | 25.128101 | 22 |
| AGATCGG | 370 | 0.0 | 24.930677 | 25 |
| CGTATGC | 745 | 0.0 | 23.560595 | 41 |
| CTCGTAT | 755 | 0.0 | 23.243397 | 39 |
| CCGATAG | 775 | 0.0 | 23.224173 | 28 |
| ATAGCGA | 760 | 0.0 | 23.09048 | 31 |
| CGATAGC | 770 | 0.0 | 23.08279 | 29 |
| AATGCCG | 1200 | 0.0 | 23.060877 | 18 |
| TGCCGAG | 1195 | 0.0 | 22.969095 | 20 |
| TCTCGTA | 765 | 0.0 | 22.939562 | 38 |
| ACCGATA | 775 | 0.0 | 22.93387 | 27 |
| GACCGAT | 780 | 0.0 | 22.786858 | 26 |
| GATAGCG | 780 | 0.0 | 22.786858 | 30 |
| TCGTATG | 775 | 0.0 | 22.643568 | 40 |