Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378452.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 881418 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTACTATCTCGTATGCCGTC | 3961 | 0.4493895064543724 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTACTATCTCGTATGCC | 3582 | 0.40639061149193684 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2247 | 0.25493012395934733 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1002 | 0.11368045581097731 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 490 | 0.0 | 36.7384 | 43 |
| ATGCCGT | 505 | 0.0 | 35.20157 | 44 |
| TGCCGTC | 520 | 0.0 | 34.186142 | 45 |
| CGGCTAA | 85 | 5.456968E-12 | 31.760702 | 17 |
| CCGGCTA | 105 | 8.54925E-11 | 25.711044 | 16 |
| ATCGGAA | 430 | 0.0 | 23.543543 | 27 |
| AGATCGG | 450 | 0.0 | 22.997103 | 25 |
| TCGGAAG | 460 | 0.0 | 22.49844 | 28 |
| AACGGGT | 50 | 0.0022658533 | 22.497164 | 12 |
| GATCGGA | 465 | 0.0 | 21.771448 | 26 |
| AATGCCG | 1320 | 0.0 | 21.644999 | 18 |
| CGTATGC | 835 | 0.0 | 21.556614 | 41 |
| CGTGTAC | 825 | 0.0 | 21.545183 | 29 |
| CTCGTAT | 840 | 0.0 | 21.427086 | 39 |
| TCTCGTA | 845 | 0.0 | 21.300299 | 38 |
| TATCTCG | 865 | 0.0 | 21.067904 | 36 |
| TCGTATG | 865 | 0.0 | 21.067904 | 40 |
| AGACCGT | 845 | 0.0 | 21.03285 | 25 |
| ATGCCGA | 1360 | 0.0 | 21.00838 | 19 |
| ATCTCGT | 875 | 0.0 | 20.827127 | 37 |