Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378572.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 361778 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATCGAATCTCGTATGCC | 1891 | 0.5226962391300742 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGGA | 190 | 0.0 | 40.26217 | 29 |
| GGATCGA | 190 | 0.0 | 40.26217 | 33 |
| CGGATCG | 190 | 0.0 | 40.26217 | 32 |
| TCTCGTA | 190 | 0.0 | 40.26217 | 41 |
| CGAATCT | 190 | 0.0 | 40.26217 | 37 |
| TCGTATG | 190 | 0.0 | 40.26217 | 43 |
| TCGAATC | 190 | 0.0 | 40.26217 | 36 |
| ACCGGAT | 195 | 0.0 | 39.229805 | 30 |
| CTCGTAT | 195 | 0.0 | 39.229805 | 42 |
| GATCGAA | 200 | 0.0 | 38.249058 | 34 |
| CGTATGC | 205 | 0.0 | 37.31616 | 44 |
| CCGGATC | 205 | 0.0 | 37.31616 | 31 |
| ATCTCGT | 210 | 0.0 | 36.427677 | 40 |
| GAGACCG | 210 | 0.0 | 36.427677 | 27 |
| AGACCGG | 210 | 0.0 | 36.427677 | 28 |
| GTATGCC | 215 | 0.0 | 35.58052 | 45 |
| AATCTCG | 215 | 0.0 | 35.58052 | 39 |
| GCGGTTC | 245 | 0.0 | 33.06041 | 8 |
| AGCGGTT | 245 | 0.0 | 33.06041 | 7 |
| CGGAAGA | 235 | 0.0 | 32.561394 | 1 |