Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378512.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 782713 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAACAATCTCGTATGCC | 4829 | 0.6169566622759556 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATAACAATCTCGTATGCCGTC | 4378 | 0.5593365639768344 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1677 | 0.2142547779326522 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 565 | 0.0 | 39.0424 | 44 |
| TGCCGTC | 595 | 0.0 | 37.07388 | 45 |
| TATGCCG | 590 | 0.0 | 37.00655 | 43 |
| ATCGGAA | 360 | 0.0 | 27.49711 | 27 |
| AGATCGG | 360 | 0.0 | 26.872177 | 25 |
| CGGAAGA | 945 | 0.0 | 25.977867 | 1 |
| GATCGGA | 380 | 0.0 | 25.45785 | 26 |
| TCGGAAG | 415 | 0.0 | 24.93714 | 28 |
| CCGAGAT | 425 | 0.0 | 22.762314 | 22 |
| CCGATAA | 1110 | 0.0 | 21.68691 | 31 |
| ACCGATA | 1130 | 0.0 | 21.303072 | 30 |
| CGATAAC | 1130 | 0.0 | 21.303072 | 32 |
| CTCGTAT | 1110 | 0.0 | 21.284267 | 42 |
| GACCGAT | 1135 | 0.0 | 21.209227 | 29 |
| CGTATGC | 1115 | 0.0 | 21.196947 | 44 |
| TCTCGTA | 1105 | 0.0 | 21.176952 | 41 |
| GAAGAGC | 1210 | 0.0 | 20.830914 | 3 |
| GTATGCC | 1135 | 0.0 | 20.823433 | 45 |
| AGACCGA | 1165 | 0.0 | 20.663067 | 28 |
| ATCTCGT | 1115 | 0.0 | 20.580797 | 40 |