Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378217.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 837703 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4126 | 0.49253733124985827 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTAGATCTCGTATGCC | 2035 | 0.2429261922184832 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTAGATCTCGTATGCCGTC | 1953 | 0.23313752009960573 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGATCGG | 655 | 0.0 | 36.754314 | 25 |
| TATGCCG | 270 | 0.0 | 36.665257 | 43 |
| GATCGGA | 660 | 0.0 | 36.47587 | 26 |
| ATCGGAA | 670 | 0.0 | 35.931454 | 27 |
| TCGGAAG | 710 | 0.0 | 35.1747 | 28 |
| ATGCCGT | 300 | 0.0 | 33.748703 | 44 |
| GAGATCG | 715 | 0.0 | 33.670033 | 24 |
| CGAGATC | 755 | 0.0 | 32.184193 | 23 |
| CCGAGAT | 780 | 0.0 | 31.152649 | 22 |
| TGCCGTC | 330 | 0.0 | 29.998846 | 45 |
| TGCCGAG | 1180 | 0.0 | 29.363277 | 20 |
| AATGCCG | 1185 | 0.0 | 29.239382 | 18 |
| ATGCCGA | 1185 | 0.0 | 29.239382 | 19 |
| CGGAAGA | 890 | 0.0 | 28.566317 | 29 |
| GCCGAGA | 1235 | 0.0 | 27.509064 | 21 |
| GAATGCC | 1370 | 0.0 | 25.619452 | 17 |
| GGAATGC | 1455 | 0.0 | 24.122784 | 16 |
| GAAGAGC | 1085 | 0.0 | 23.017548 | 31 |
| GACCGCA | 450 | 0.0 | 22.499136 | 26 |
| ACCGCAG | 460 | 0.0 | 22.010023 | 27 |