FastQCFastQC Report
Mon 6 Jun 2016
ERR1391173.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391173.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1159220
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA27710.23904004416762997No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA19550.16864788392194752No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT13170.11361087627887718Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTCT2650.041.60301636
GGCGGTC2650.041.60301635
TTCGGTA2650.041.60301622
TCGGTAT2650.041.60301623
TAAGCCG3500.040.49926413
TCGGGGA2750.040.0901814
ATTCGGT2800.039.37428321
CGTCATA3650.038.8349124
CCGATGA3600.038.7492917
TGACGTC3600.038.7492921
AGGCGGT2850.038.68350634
AATTCGG2850.038.68350620
AGCCGAT3700.038.31011215
GATCGGA1600.037.96805626
ATCGGAA1550.037.7412527
GACGTCA3700.037.70201522
GCCGATG3700.037.70201516
ACGTCAT3800.037.30195223
CGATGAC3750.037.1993218
TATGCCG1300.036.34549343