Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378336.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 694913 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCAATTATCTCGTATGCC | 3198 | 0.46020149284874506 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3110 | 0.4475380371355839 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCAATTATCTCGTATGCCGTC | 2601 | 0.37429145806741276 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 265 | 0.0 | 41.59885 | 43 |
| TGCCGTC | 275 | 0.0 | 39.26808 | 45 |
| ATGCCGT | 285 | 0.0 | 37.89025 | 44 |
| AGATCGG | 430 | 0.0 | 34.007603 | 25 |
| TCGGAAG | 470 | 0.0 | 33.50667 | 28 |
| GATCGGA | 445 | 0.0 | 33.366837 | 26 |
| ATCGGAA | 465 | 0.0 | 31.931705 | 27 |
| TGAACCG | 30 | 0.0051488522 | 29.996452 | 10 |
| ACGGATA | 30 | 0.0051488522 | 29.996452 | 31 |
| TCGTATA | 75 | 1.7025741E-9 | 29.99645 | 9 |
| CGAGATC | 510 | 0.0 | 28.673079 | 23 |
| CCGAGAT | 525 | 0.0 | 28.282366 | 22 |
| GAGATCG | 530 | 0.0 | 27.591076 | 24 |
| AATGCCG | 1075 | 0.0 | 24.485474 | 18 |
| ATGCCGA | 1075 | 0.0 | 24.485474 | 19 |
| TGCCGAG | 1085 | 0.0 | 24.46715 | 20 |
| TTCGTAT | 95 | 2.114939E-8 | 23.681408 | 8 |
| GACCGCC | 600 | 0.0 | 23.24725 | 29 |
| TATCTCG | 595 | 0.0 | 23.064499 | 39 |
| AGACCGC | 595 | 0.0 | 23.064499 | 28 |