Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391270.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 709584 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 5028 | 0.7085841845362917 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3422 | 0.48225439130532816 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGACTAGATCTCGTATGCCGTC | 1336 | 0.18827932986087623 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACTAGATCTCGTATGCC | 1126 | 0.15868452501747501 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 818 | 0.11527881124715326 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACGTCA | 475 | 0.0 | 43.57042 | 22 |
| CGTCATA | 475 | 0.0 | 43.57042 | 24 |
| CGATGAC | 470 | 0.0 | 43.555305 | 18 |
| AAGCCGA | 480 | 0.0 | 43.11656 | 14 |
| TAAGCCG | 480 | 0.0 | 43.11656 | 13 |
| TGACGTC | 475 | 0.0 | 43.09683 | 21 |
| ACGTCAT | 485 | 0.0 | 42.67206 | 23 |
| GCCGATG | 485 | 0.0 | 42.208233 | 16 |
| AGCCGAT | 490 | 0.0 | 41.77754 | 15 |
| ATGACGT | 490 | 0.0 | 41.77754 | 20 |
| AATTCGG | 445 | 0.0 | 40.94704 | 20 |
| CCGATGA | 500 | 0.0 | 40.941986 | 17 |
| GATGACG | 500 | 0.0 | 40.941986 | 19 |
| TTCGGTA | 455 | 0.0 | 40.047108 | 22 |
| GAATTCG | 465 | 0.0 | 39.669655 | 19 |
| TTCCTCG | 365 | 0.0 | 39.486073 | 10 |
| TATGCCG | 160 | 0.0 | 39.36729 | 43 |
| ATTCGGT | 465 | 0.0 | 39.18588 | 21 |
| TCGGTAT | 465 | 0.0 | 39.18588 | 23 |
| GGCGGTC | 460 | 0.0 | 39.122776 | 35 |