Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391266.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 585188 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4123 | 0.7045599021169265 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2807 | 0.4796749078928481 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCCGTC | 716 | 0.12235384184227974 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCC | 662 | 0.11312603812791786 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 592 | 0.10116407035004135 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCCGATG | 385 | 0.0 | 43.24232 | 16 |
| GACGTCA | 380 | 0.0 | 43.21925 | 22 |
| TGACGTC | 380 | 0.0 | 43.21925 | 21 |
| CGTCATA | 390 | 0.0 | 42.68793 | 24 |
| ATTCGGT | 450 | 0.0 | 42.495644 | 21 |
| CCGATGA | 390 | 0.0 | 42.111065 | 17 |
| ACGTCAT | 390 | 0.0 | 42.111065 | 23 |
| GCGGTCT | 455 | 0.0 | 42.02866 | 36 |
| TCGGGGA | 455 | 0.0 | 42.02866 | 14 |
| TTCGGTA | 455 | 0.0 | 42.02866 | 22 |
| GGCGGTC | 450 | 0.0 | 41.995693 | 35 |
| AGCCGAT | 395 | 0.0 | 41.57802 | 15 |
| CGGGGAA | 460 | 0.0 | 41.571823 | 15 |
| GAATTCG | 460 | 0.0 | 41.571823 | 19 |
| TCGGTAT | 460 | 0.0 | 41.571823 | 23 |
| TCCTCGG | 380 | 0.0 | 41.46083 | 11 |
| AATTCGG | 465 | 0.0 | 41.124817 | 20 |
| CGGTATT | 465 | 0.0 | 41.124817 | 24 |
| AGGCGGT | 460 | 0.0 | 41.082745 | 34 |
| AAGCCGA | 400 | 0.0 | 41.05829 | 14 |