Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378214.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 742737 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6359 | 0.8561576978122808 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGAGACATCTCGTATGCCGTC | 4353 | 0.5860755556812169 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGAGACATCTCGTATGCC | 2932 | 0.3947561519084144 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 913 | 0.1229237267027225 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 445 | 0.0 | 36.908676 | 44 |
| TATGCCG | 460 | 0.0 | 36.683357 | 43 |
| TGCCGTC | 470 | 0.0 | 34.94545 | 45 |
| GATCGGA | 885 | 0.0 | 31.778425 | 26 |
| ATCGGAA | 900 | 0.0 | 30.998795 | 27 |
| AGATCGG | 915 | 0.0 | 30.73651 | 25 |
| TCGGAAG | 945 | 0.0 | 30.23692 | 28 |
| CCGAGAT | 940 | 0.0 | 30.158401 | 22 |
| CGAGATC | 945 | 0.0 | 29.760748 | 23 |
| GAGATCG | 1015 | 0.0 | 27.929947 | 24 |
| ATGCCGA | 1855 | 0.0 | 24.500395 | 19 |
| AATGCCG | 1865 | 0.0 | 24.369026 | 18 |
| TGCCGAG | 1860 | 0.0 | 24.313568 | 20 |
| GCCGAGA | 1885 | 0.0 | 23.633034 | 21 |
| GAATGCC | 1965 | 0.0 | 23.128872 | 17 |
| GGAATGC | 2075 | 0.0 | 22.011192 | 16 |
| CGGAAGA | 1320 | 0.0 | 21.646885 | 29 |
| AGGAATG | 2155 | 0.0 | 21.298477 | 15 |
| CAGCGGA | 55 | 0.0039361324 | 20.45375 | 11 |
| CTCGTAT | 845 | 0.0 | 19.969637 | 39 |