Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378203.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 540596 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 7981 | 1.4763335281800087 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATCAATCTCGTATGCCGTC | 4605 | 0.85183760146209 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATCAATCTCGTATGCC | 3032 | 0.5608624555120645 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1021 | 0.18886562238714308 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GGTCGGA | 45 | 1.9254003E-8 | 39.99934 | 26 |
| ATGCCGT | 545 | 0.0 | 39.632378 | 44 |
| TGCCGTC | 545 | 0.0 | 39.632378 | 45 |
| TATGCCG | 540 | 0.0 | 39.582684 | 43 |
| GATCGGA | 1085 | 0.0 | 38.156055 | 26 |
| ATCGGAA | 1080 | 0.0 | 37.916042 | 27 |
| TCGGAAG | 1130 | 0.0 | 37.632126 | 28 |
| AGATCGG | 1105 | 0.0 | 37.465446 | 25 |
| GAGATCG | 1130 | 0.0 | 37.03479 | 24 |
| CGAGATC | 1155 | 0.0 | 36.622776 | 23 |
| CCGAGAT | 1165 | 0.0 | 36.50155 | 22 |
| GTCGGAA | 55 | 1.1259908E-7 | 32.726734 | 27 |
| AATGCCG | 2115 | 0.0 | 31.06332 | 18 |
| ATGCCGA | 2120 | 0.0 | 30.990055 | 19 |
| TGCCGAG | 2125 | 0.0 | 30.811256 | 20 |
| GCCGAGA | 2140 | 0.0 | 29.96446 | 21 |
| GAATGCC | 2220 | 0.0 | 29.391409 | 17 |
| GGAATGC | 2275 | 0.0 | 28.779745 | 16 |
| AGGAATG | 2320 | 0.0 | 28.22152 | 15 |
| CGGAAGA | 1510 | 0.0 | 28.161787 | 29 |