Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391306.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 511472 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2906 | 0.5681640441705509 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2120 | 0.4144899427534645 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAAGATATCTCGTATGCCGTC | 1845 | 0.3607235586698783 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAAGATATCTCGTATGCC | 1663 | 0.32513998811274125 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 819 | 0.16012606750711672 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 335 | 0.0 | 44.323544 | 15 |
| CCGATGA | 335 | 0.0 | 44.323544 | 17 |
| GCCGATG | 345 | 0.0 | 43.038803 | 16 |
| AAGCCGA | 345 | 0.0 | 43.038803 | 14 |
| CGTCATA | 345 | 0.0 | 43.038803 | 24 |
| TAAGCCG | 350 | 0.0 | 42.423965 | 13 |
| TGACGTC | 355 | 0.0 | 41.826443 | 21 |
| ATGACGT | 355 | 0.0 | 41.826443 | 20 |
| ACGTCAT | 355 | 0.0 | 41.826443 | 23 |
| GATGACG | 355 | 0.0 | 41.826443 | 19 |
| CGATGAC | 355 | 0.0 | 41.826443 | 18 |
| GCGGTCT | 310 | 0.0 | 41.36647 | 36 |
| GGCGGTC | 310 | 0.0 | 41.36647 | 35 |
| AGATTCG | 105 | 0.0 | 40.72977 | 10 |
| TATGCCG | 210 | 0.0 | 40.709866 | 43 |
| TTCGGTA | 315 | 0.0 | 40.70986 | 22 |
| GACGTCA | 365 | 0.0 | 40.68051 | 22 |
| TGCCGTC | 205 | 0.0 | 40.625202 | 45 |
| GATTCGG | 100 | 0.0 | 40.515404 | 11 |
| AGGCGGT | 320 | 0.0 | 40.073772 | 34 |