Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378559.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 319181 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGCGATCTCGTATGCC | 2975 | 0.9320730243968156 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGATAG | 290 | 0.0 | 45.003445 | 31 |
| GACCGAT | 290 | 0.0 | 45.003445 | 29 |
| AGACCGA | 290 | 0.0 | 45.003445 | 28 |
| CGATAGC | 295 | 0.0 | 45.003445 | 32 |
| TAGCGAT | 305 | 0.0 | 44.25875 | 35 |
| GATAGCG | 300 | 0.0 | 44.25339 | 33 |
| AGCGATC | 300 | 0.0 | 44.24646 | 36 |
| CGTATGC | 295 | 0.0 | 44.240677 | 44 |
| GAGACCG | 295 | 0.0 | 44.240677 | 27 |
| TCTCGTA | 290 | 0.0 | 44.227524 | 41 |
| ATAGCGA | 305 | 0.0 | 43.527924 | 34 |
| ACCGATA | 300 | 0.0 | 43.50333 | 30 |
| CTCGTAT | 295 | 0.0 | 43.477905 | 42 |
| TCGTATG | 295 | 0.0 | 43.477905 | 43 |
| ATCTCGT | 305 | 0.0 | 42.790165 | 40 |
| GCGATCT | 300 | 0.0 | 42.74658 | 37 |
| GATCTCG | 325 | 0.0 | 40.84928 | 39 |
| GTATGCC | 320 | 0.0 | 40.784374 | 45 |
| CCGAGAC | 315 | 0.0 | 40.711025 | 25 |
| CGATCTC | 330 | 0.0 | 39.54229 | 38 |