FastQCFastQC Report
Mon 6 Jun 2016
ERR1391246.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391246.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences669471
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA43680.652455446165704No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA32560.4863541512627134No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGATCTATCTCGTATGCCGTC7530.11247686606290638Illumina Paired End PCR Primer 2 (96% over 30bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA6700.10007901761241338No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTATT3950.043.28783424
TCGGTAT3950.043.28783423
TTCGGTA4050.042.21899822
TTCGGGG750.041.9967913
CGTCATA4400.041.92861624
GACGTCA4350.041.89335322
GCCGATG4300.041.85726516
AGGCGGT4100.041.70413234
AGCCGAT4350.041.37615215
ATTCGGT4150.041.2016721
CGGGGAA4250.040.76159315
TCGGGGA4200.040.71117814
GGCGGTC4200.040.71117835
CGGTCTC4200.040.71117837
ACGTCAT4600.040.59472323
TGCCGTC1000.040.5059845
ATGACGT4450.040.44634620
AATTCGG4250.040.2322220
TTCCTCG3550.039.9354810
GCGGTCT4300.039.76440436