FastQCFastQC Report
Mon 6 Jun 2016
ERR1378123.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378123.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences676405
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA13300.19662775999586046No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGACATCTATCTCGTATGCCGTC13130.19411447283801864Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACATCTATCTCGTATGCC12610.18642677094344365Illumina Paired End PCR Primer 2 (97% over 34bp)
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA9680.14310952757593454No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGTAT1750.041.14055623
CGATGAC1450.040.3425718
GCCGATG1400.040.1733616
AGGCGGT1750.039.8519734
TGCCGTC1550.039.19425645
TCGGGGA1900.039.07387514
ATGACGT1500.038.9978220
AATTCGG1850.038.91674420
TAAGCCG1450.038.7880713
GGCGGTC1800.038.74497235
CGGGGAA1950.038.07198315
GACGTCA1550.037.7398322
GATGACG1550.037.7398319
CCGATGA1550.037.73703817
CGGTCTC1850.037.6978137
GCGGTCT1900.036.7057636
ACGTCAT1600.036.5604623
TTCGGTA2000.035.9979922
CGGTATT2000.035.9979924
GAATTCG2000.035.9979919