Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391234.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 596691 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 5208 | 0.872813566821018 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3699 | 0.6199188524713797 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGATAATCTCGTATGCCGTC | 781 | 0.13088851683702285 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 759 | 0.12720151636274052 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGATAATCTCGTATGCC | 711 | 0.11915715169157906 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCATA | 555 | 0.0 | 43.777996 | 24 |
| TAAGCCG | 550 | 0.0 | 43.76694 | 13 |
| ACGTCAT | 565 | 0.0 | 43.003162 | 23 |
| AGATTCG | 95 | 0.0 | 42.64381 | 10 |
| ATGACGT | 570 | 0.0 | 42.625942 | 20 |
| CGATGAC | 570 | 0.0 | 42.625942 | 18 |
| AAGCCGA | 565 | 0.0 | 42.604984 | 14 |
| GACGTCA | 580 | 0.0 | 42.278893 | 22 |
| GCCGATG | 575 | 0.0 | 42.25528 | 16 |
| GATGACG | 575 | 0.0 | 42.25528 | 19 |
| TGACGTC | 585 | 0.0 | 41.53297 | 21 |
| AGCCGAT | 590 | 0.0 | 41.180992 | 15 |
| ATAAGCC | 595 | 0.0 | 40.456833 | 12 |
| CCGATGA | 605 | 0.0 | 40.159977 | 17 |
| TCGGGGA | 555 | 0.0 | 40.12983 | 14 |
| TTCGGTA | 535 | 0.0 | 39.947987 | 22 |
| TTCCTCG | 435 | 0.0 | 39.839016 | 10 |
| AGGCGGT | 540 | 0.0 | 39.5781 | 34 |
| CGGTATT | 540 | 0.0 | 39.5781 | 24 |
| TCGGTAT | 540 | 0.0 | 39.5781 | 23 |