Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391280.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 683401 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4891 | 0.7156852272677389 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3229 | 0.47248979735177443 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAGAATCTCGTATGCCGTC | 2376 | 0.3476728889773354 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAGAATCTCGTATGCC | 1784 | 0.2610473206799522 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1115 | 0.1631545754249701 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGGGGA | 345 | 0.0 | 43.039837 | 14 |
| CTCGGGG | 315 | 0.0 | 42.139294 | 13 |
| GCCGATG | 535 | 0.0 | 42.05252 | 16 |
| TAAGCCG | 535 | 0.0 | 42.05252 | 13 |
| GACGTCA | 540 | 0.0 | 41.663143 | 22 |
| TATGCCG | 245 | 0.0 | 41.32304 | 43 |
| AGCCGAT | 545 | 0.0 | 41.280914 | 15 |
| CCGATGA | 545 | 0.0 | 41.280914 | 17 |
| TGACGTC | 545 | 0.0 | 41.280914 | 21 |
| CGTCATA | 550 | 0.0 | 40.905632 | 24 |
| GGCGGTC | 370 | 0.0 | 40.7398 | 35 |
| TTCGGTA | 370 | 0.0 | 40.7398 | 22 |
| CGGTATT | 370 | 0.0 | 40.7398 | 24 |
| ACGTCAT | 555 | 0.0 | 40.537117 | 23 |
| TTCCTCG | 330 | 0.0 | 40.235645 | 10 |
| GCGGTCT | 375 | 0.0 | 40.1966 | 36 |
| AGGCGGT | 375 | 0.0 | 40.1966 | 34 |
| CGATGAC | 565 | 0.0 | 39.81964 | 18 |
| ATGCCGT | 260 | 0.0 | 39.80433 | 44 |
| AATTCGG | 380 | 0.0 | 39.667694 | 20 |