FastQCFastQC Report
Mon 6 Jun 2016
ERR1391371.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391371.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences991259
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGTGC300.00504936830.1176265
GATCGGA1400.025.70050618
CGGGATT901.198714E-824.98408514
AGATCGG1550.024.66170917
ATCGGAA1500.023.9871419
ATCTTCG1401.2914825E-1020.9747755
TCGGAAG1401.382432E-1020.8816620
CGTATAA1251.7795173E-819.78739510
TCGTATA1251.7795173E-819.7873959
CGAAATC951.3227767E-518.93530510
TCCAACG1454.5438355E-918.6936995
CGTTTCC1454.5438355E-918.6936991
CCCGCCA1102.1725227E-618.481273
TCGTTGG1651.1659722E-917.7967784
TTCGTAT1406.520531E-817.6673158
CCAACGA1551.03791535E-817.4876566
CCTTCGT1701.7353159E-917.2733441
CTTCGTT1701.7353159E-917.2733442
GCGGTTC1701.8444553E-917.1949328
AAACGGG1701.8444553E-917.1949311