Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378494.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 617748 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCTGAATCTCGTATGCC | 2615 | 0.42331177114292556 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCTGAATCTCGTATGCCGTC | 2363 | 0.3825184379390949 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1166 | 0.18875010522089913 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 340 | 0.0 | 39.717243 | 43 |
| ATGCCGT | 380 | 0.0 | 35.53648 | 44 |
| TGCCGTC | 390 | 0.0 | 34.62529 | 45 |
| CGGAAAC | 30 | 0.005148424 | 29.996439 | 14 |
| TAACGGG | 30 | 0.005148424 | 29.996439 | 18 |
| GATCGGA | 250 | 0.0 | 26.996796 | 26 |
| AGATCGG | 280 | 0.0 | 24.10428 | 25 |
| ATCGGAA | 280 | 0.0 | 24.10428 | 27 |
| CGGAAGA | 585 | 0.0 | 23.094748 | 1 |
| TCGGAAG | 295 | 0.0 | 22.87864 | 28 |
| AATGCCG | 935 | 0.0 | 21.41457 | 18 |
| CCGAGAT | 320 | 0.0 | 21.091246 | 22 |
| TCGTATG | 655 | 0.0 | 20.95171 | 40 |
| CGTATGC | 650 | 0.0 | 20.775171 | 44 |
| CTCGTAT | 650 | 0.0 | 20.768446 | 42 |
| TGCCGAG | 970 | 0.0 | 20.641878 | 20 |
| TCTCGTA | 660 | 0.0 | 20.453772 | 41 |
| ATGCCGA | 980 | 0.0 | 20.43125 | 19 |
| GACCGAG | 670 | 0.0 | 20.146862 | 26 |
| AATCTCG | 670 | 0.0 | 20.146862 | 36 |