Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378101.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 788844 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCCTTAATCTCGTATGCCGTC | 2176 | 0.2758466819802141 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1848 | 0.23426685124054947 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1228 | 0.1556708297204517 | No Hit |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCCTTAATCTCGTATGCC | 984 | 0.12473949221899387 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGTATT | 190 | 0.0 | 41.441822 | 24 |
| TGCCGTC | 255 | 0.0 | 39.708122 | 45 |
| AGGCGGT | 200 | 0.0 | 39.36973 | 34 |
| TATGCCG | 260 | 0.0 | 38.937096 | 43 |
| TCGGTAT | 210 | 0.0 | 38.566265 | 23 |
| GGCGGTC | 205 | 0.0 | 38.409492 | 35 |
| TTCGGTA | 205 | 0.0 | 38.409492 | 22 |
| ATGCCGT | 265 | 0.0 | 38.202435 | 44 |
| CTCGGGG | 160 | 0.0 | 37.96367 | 13 |
| AGCCGAT | 235 | 0.0 | 37.335426 | 15 |
| TCGGGGA | 215 | 0.0 | 36.623005 | 14 |
| AATTCGG | 215 | 0.0 | 36.623005 | 20 |
| GCCGATG | 240 | 0.0 | 36.557606 | 16 |
| CGTCATA | 245 | 0.0 | 35.81153 | 24 |
| ATTCGGT | 220 | 0.0 | 35.790665 | 21 |
| CCTCGGG | 170 | 0.0 | 35.73051 | 12 |
| ATGACGT | 255 | 0.0 | 35.2894 | 20 |
| GATGACG | 250 | 0.0 | 35.095303 | 19 |
| CGATGAC | 250 | 0.0 | 35.095303 | 18 |
| GCGGTCT | 225 | 0.0 | 34.995316 | 36 |