Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1391309.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 689100 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2981 | 0.4325932375562328 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2231 | 0.3237556232767378 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACATAAATCTCGTATGCCGTC | 1992 | 0.2890727035263387 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACATAAATCTCGTATGCC | 1705 | 0.24742417646205195 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 899 | 0.13046002031635467 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 310 | 0.0 | 42.817265 | 15 |
| TGACGTC | 315 | 0.0 | 42.137627 | 21 |
| CGTCATA | 315 | 0.0 | 42.137627 | 24 |
| TAAGCCG | 320 | 0.0 | 41.47922 | 13 |
| TCGGGGA | 350 | 0.0 | 41.13775 | 14 |
| ATGACGT | 325 | 0.0 | 40.841084 | 20 |
| GACGTCA | 330 | 0.0 | 40.22228 | 22 |
| GCCGATG | 330 | 0.0 | 40.22228 | 16 |
| AAGCCGA | 330 | 0.0 | 40.22228 | 14 |
| ACGTCAT | 330 | 0.0 | 40.22228 | 23 |
| GGCGGTC | 350 | 0.0 | 39.852196 | 35 |
| CTCGGGG | 295 | 0.0 | 39.656094 | 13 |
| AATTCGG | 365 | 0.0 | 39.447155 | 20 |
| TTCGGTA | 365 | 0.0 | 39.447155 | 22 |
| GCGGTCT | 360 | 0.0 | 39.370113 | 36 |
| TATGCCG | 235 | 0.0 | 39.250446 | 43 |
| GATGACG | 340 | 0.0 | 39.03927 | 19 |
| AGATTCG | 70 | 0.0 | 38.58904 | 10 |
| GATTCGG | 70 | 0.0 | 38.58904 | 11 |
| CGATGAC | 345 | 0.0 | 38.473484 | 18 |