Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378510.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 724489 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGTATATCTCGTATGCCGTC | 4861 | 0.6709556666836902 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGTATATCTCGTATGCC | 4562 | 0.6296851988090917 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1804 | 0.24900309045409935 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 867 | 0.1196705540042706 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 630 | 0.0 | 40.364697 | 45 |
| TATGCCG | 635 | 0.0 | 40.046867 | 43 |
| ATGCCGT | 645 | 0.0 | 39.425983 | 44 |
| GTATGCC | 1075 | 0.0 | 23.650692 | 42 |
| CCGAAGT | 1105 | 0.0 | 23.414206 | 28 |
| CTCGTAT | 1085 | 0.0 | 23.22374 | 39 |
| GACCGAA | 1105 | 0.0 | 23.210604 | 26 |
| CGAAGTA | 1105 | 0.0 | 23.210604 | 29 |
| TATCTCG | 1090 | 0.0 | 23.118805 | 36 |
| TCTCGTA | 1090 | 0.0 | 23.11721 | 38 |
| CGTATGC | 1100 | 0.0 | 23.111578 | 41 |
| ACCGAAG | 1110 | 0.0 | 23.106052 | 27 |
| GAGACCG | 1105 | 0.0 | 23.005415 | 24 |
| ATCTCGT | 1110 | 0.0 | 22.70225 | 37 |
| TCGTATG | 1120 | 0.0 | 22.698874 | 40 |
| AGACCGA | 1125 | 0.0 | 22.59643 | 25 |
| TCGAAAT | 50 | 0.0022658866 | 22.496447 | 12 |
| AATGCCG | 1560 | 0.0 | 22.063822 | 18 |
| TGCCGAG | 1575 | 0.0 | 21.85369 | 20 |
| ATGCCGA | 1590 | 0.0 | 21.647522 | 19 |