FastQCFastQC Report
Mon 6 Jun 2016
ERR1391379.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391379.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1075311
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTTTCG500.002211878522.5912421
GATCGGA500.002271994522.48723618
ATCGGAA600.006531592518.73936319
GATCGAG600.00653334618.73849143
CGGGATT1454.8751233E-412.40559714
CCGGCTA1802.358249E-411.24257216
ACTAGAC3907.8216544E-1110.9553220
ACGGGAT1903.8901312E-410.65085813
CCTTCGT1700.001776386410.6311721
CGGGGTT1700.001776386410.6311721
CTTCGTT1700.001777769410.6301782
TGAGCCG2801.2654637E-610.44050245
TCTCGAA1954.737853E-410.4257535
CTCGAAC1800.00285837710.0396136
CCGAGAT2504.3751512E-59.89392443
GAATCGC2057.8311434E-49.87152712
TCGCTTG2555.439583E-59.69947315
CCCGGCT2109.767173E-49.6364915
AGAATCG2109.767173E-49.6364911
GAGCCGA2352.561115E-49.56859140