Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379104.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 728843 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCAGATATCTCGTATGCCGTC | 4090 | 0.5611633781212141 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCAGATATCTCGTATGCC | 3461 | 0.47486221312408844 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1188 | 0.16299806679902257 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 485 | 0.0 | 40.819077 | 43 |
| ATGCCGT | 540 | 0.0 | 36.66158 | 44 |
| GTTCGTA | 25 | 0.0020981187 | 36.029613 | 3 |
| TGCCGTC | 585 | 0.0 | 33.841457 | 45 |
| CATCCGT | 30 | 0.005151257 | 29.99378 | 15 |
| CGGAAGA | 760 | 0.0 | 22.822641 | 1 |
| CTCGTAT | 860 | 0.0 | 22.75847 | 39 |
| CGTATGC | 875 | 0.0 | 22.625431 | 41 |
| TCGTATG | 880 | 0.0 | 22.496878 | 40 |
| TCTCGTA | 875 | 0.0 | 22.36679 | 38 |
| GTATGCC | 895 | 0.0 | 22.119837 | 42 |
| TATCTCG | 885 | 0.0 | 22.117092 | 36 |
| AATGCCG | 1230 | 0.0 | 21.763779 | 18 |
| AGACCGG | 920 | 0.0 | 21.517277 | 25 |
| ATCTCGT | 915 | 0.0 | 21.391943 | 37 |
| TGCCGAG | 1290 | 0.0 | 21.100275 | 20 |
| GAAGAGC | 835 | 0.0 | 21.035254 | 3 |
| ATGCCGA | 1295 | 0.0 | 21.018806 | 19 |
| GCAGATA | 980 | 0.0 | 20.892826 | 31 |
| AGCGGTT | 1290 | 0.0 | 20.772888 | 4 |