FastQCFastQC Report
Mon 6 Jun 2016
ERR1390718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences822275
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC601.5643309E-1037.4853544
CGCAATT601.5643309E-1037.4853532
AGACCGC708.1672624E-1032.1322628
AGATCGG751.708031E-929.99010817
GATCGGA751.708031E-929.99010818
ATCGGAA751.708031E-929.99010819
CGGAGCA453.497512E-529.99010826
CTCGTAT751.70985E-929.98828542
ACCGCAA751.70985E-929.98828530
GACCGCA751.70985E-929.98828529
CCGCAAT751.70985E-929.98828531
CCGCGAG300.005156255329.98828143
TCGTATG803.4069672E-928.11401743
TCTCGTA856.502887E-926.4602541
ATCTCGT957.4396667E-1026.04245840
GAGACCG952.1209416E-823.67640127
ACCGAAG500.002268408422.4925824
ACGCCCG500.002269210322.49121312
CATCTCG1104.0672603E-922.49121339
GTATGCC1156.7921064E-921.51333245