FastQCFastQC Report
Mon 6 Jun 2016
ERR1378680.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378680.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1347540
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG708.1490725E-1032.14145343
CGTATGC803.3978722E-928.12377244
CTCGTAT901.1919838E-824.99890742
GCGGTTC901.19289325E-824.9970518
GAGCGGT952.1071173E-823.6937266
TATCTCG1056.110167E-821.42842939
AGAGCGG1109.945143E-820.4627635
TCTCGTA1109.991891E-820.4536541
ATCTCGT1151.5959631E-719.56508840
AGCGGTT1202.5005465E-718.7477917
ATGCCGA1551.0921212E-817.41730122
CGGTTCA1305.791553E-717.305659
AATGCCG1601.6165359E-816.8730121
TGCCGAG1652.361412E-816.36231423
GACCGTG1156.788576E-515.65090829
CGGAAGA1502.5527115E-615.0121571
AGACCGT1209.760856E-514.99878928
ACGCCCG1209.763944E-514.99823312
CGCCCGG1705.897655E-714.55710613
CGTGTTG1402.2314496E-514.46365432