Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379215.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 284940 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTCAAGATCTCGTATGCC | 764 | 0.26812662314873303 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGGTCA | 70 | 0.0 | 41.785553 | 31 |
| CGGTCAA | 70 | 0.0 | 41.785553 | 32 |
| GACCGGT | 65 | 0.0 | 41.5383 | 29 |
| CTCGTAT | 75 | 0.0 | 38.999847 | 42 |
| CGGTTCA | 75 | 0.0 | 38.999847 | 9 |
| TCTCGTA | 75 | 0.0 | 38.999847 | 41 |
| ATCTCGT | 80 | 0.0 | 36.562355 | 40 |
| ACCGGTC | 80 | 0.0 | 36.562355 | 30 |
| CGTATGC | 80 | 0.0 | 36.562355 | 44 |
| GCGGTTC | 80 | 0.0 | 36.562355 | 8 |
| AGACCGG | 75 | 1.8189894E-12 | 35.99986 | 28 |
| AAGAGCG | 85 | 0.0 | 34.411633 | 4 |
| GAGCGGT | 85 | 0.0 | 34.411633 | 6 |
| TCGTATG | 85 | 0.0 | 34.411633 | 43 |
| AGAGCGG | 85 | 0.0 | 34.411633 | 5 |
| GAGACCG | 80 | 1.8189894E-12 | 33.749866 | 27 |
| AGCGGTT | 90 | 0.0 | 32.499874 | 7 |
| AATGCCG | 90 | 0.0 | 32.499874 | 21 |
| GTATGCC | 90 | 0.0 | 32.499874 | 45 |
| CCGAGAC | 85 | 5.456968E-12 | 31.764582 | 25 |