Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379126.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 908465 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATCGAATCTCGTATGCCGTC | 1823 | 0.20066816002817942 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATCGAATCTCGTATGCC | 1680 | 0.18492732246151475 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 215 | 0.0 | 30.344604 | 43 |
| ATGCCGT | 255 | 0.0 | 25.584667 | 44 |
| TGCCGTC | 285 | 0.0 | 22.891544 | 45 |
| CGAATCT | 390 | 0.0 | 21.922434 | 37 |
| CTCGTAT | 380 | 0.0 | 20.720795 | 42 |
| CGGAAGA | 425 | 0.0 | 20.66807 | 1 |
| TCGTATG | 380 | 0.0 | 20.128773 | 43 |
| TCGAATC | 420 | 0.0 | 19.820847 | 36 |
| TCTCGTA | 400 | 0.0 | 19.684753 | 41 |
| ACCGGAT | 425 | 0.0 | 19.586582 | 30 |
| GACCGGA | 425 | 0.0 | 19.586582 | 29 |
| CGTATGC | 405 | 0.0 | 18.886255 | 44 |
| ATCTCGT | 455 | 0.0 | 18.294151 | 40 |
| GATCGAA | 480 | 0.0 | 17.344196 | 34 |
| GTATGCC | 455 | 0.0 | 17.305279 | 45 |
| AATCTCG | 455 | 0.0 | 17.305279 | 39 |
| AGACCGG | 515 | 0.0 | 16.163685 | 28 |
| GAGACCG | 515 | 0.0 | 16.161905 | 27 |
| GGATCGA | 525 | 0.0 | 15.85755 | 33 |
| CCGGATC | 535 | 0.0 | 15.561147 | 31 |