FastQCFastQC Report
Mon 6 Jun 2016
ERR1378848.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378848.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1112835
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT27760.24945297371128694Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTTATATCTCGTATGCCGTC20540.1845736340068384Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTTATATCTCGTATGCC16310.14656260811351188Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2850.034.7345243
GATCGGA4250.034.40482326
AGATCGG4450.032.86001625
ATGCCGT2900.031.80821644
TGCCGTC2850.031.57683645
ATCGGAA4800.030.46260327
TCGGAAG5000.029.6940128
TGCCGAG8900.027.2990920
ATGCCGA9100.026.69911219
AATGCCG9150.026.55202318
CCGAGAT6250.023.75627522
GCCGAGA10150.023.71549421
CGCGTTA4000.023.05784829
GCGTTAT4100.023.0441330
CGAGATC6450.023.01964623
CGGAAGA6450.023.01861229
GAGATCG6450.022.67086424
GAATGCC10950.022.5981817
CTCGTAT4100.022.49849539
CCGCGTT4100.022.4954628