Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379186.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 328418 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCAATTATCTCGTATGCC | 802 | 0.24420098776559143 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 85 | 0.0 | 42.352654 | 44 |
| CTCGTAT | 90 | 0.0 | 39.99973 | 42 |
| TATCTCG | 90 | 0.0 | 39.99973 | 39 |
| AGACCGC | 90 | 0.0 | 39.99973 | 28 |
| TCTCGTA | 95 | 0.0 | 37.89448 | 41 |
| CGCCAAT | 95 | 0.0 | 37.89448 | 32 |
| GCGGTTC | 100 | 0.0 | 35.99976 | 8 |
| GACCGCC | 100 | 0.0 | 35.99976 | 29 |
| TCGTATG | 100 | 0.0 | 35.99976 | 43 |
| ATCTCGT | 105 | 0.0 | 34.28548 | 40 |
| ACCGCCA | 105 | 0.0 | 34.28548 | 30 |
| CGGTTCA | 105 | 0.0 | 34.28548 | 9 |
| GAGACCG | 105 | 0.0 | 34.28548 | 27 |
| AGCGGTT | 110 | 0.0 | 32.72705 | 7 |
| GAGCGGT | 115 | 0.0 | 31.304134 | 6 |
| CCGAGAC | 115 | 0.0 | 31.304134 | 25 |
| CCGCCAA | 115 | 0.0 | 31.304134 | 31 |
| AGAGCGG | 115 | 0.0 | 31.304134 | 5 |
| GTATGCC | 120 | 0.0 | 29.999798 | 45 |
| CGAGACC | 120 | 0.0 | 29.999798 | 26 |