FastQCFastQC Report
Mon 6 Jun 2016
ERR1379198.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379198.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515894
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTATCATCTCGTATGCC12280.23803339445700086Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGGT1800.043.74886729
CCGGTTA1850.042.56646731
CGTATGC1900.041.44629744
GCGGTTC1900.041.4462978
CGGTTAT1900.041.44629732
CTCGTAT1950.040.3835742
CATCTCG1950.040.3835739
AATGCCG1950.040.3835721
GAGACCG1950.040.3835727
AGACCGG1950.040.3835728
ATGCCGA1950.040.3835722
ACCGGTT2000.039.3739830
TCTCGTA2000.039.3739841
TCGTATG2000.039.3739843
ATCTCGT2050.038.41364340
CGGTTCA2050.038.4136439
CGGAAGA2100.037.5099371
AAGAGCG2100.037.50634
GTATGCC2100.037.4990345
AGAGCGG2150.036.634065