FastQCFastQC Report
Mon 6 Jun 2016
ERR1379047.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379047.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences919872
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGGCA551.1278098E-732.72557430
CGTATGC602.4192013E-729.99844444
GACCGGC602.4192013E-729.99844429
TCGTATG602.4192013E-729.99844443
CTCGTAT702.8863724E-828.92706942
CGGCACT801.0538497E-725.31118632
CCGGCAC851.8937499E-723.82229231
TCTCGTA802.9750245E-622.49883341
AGACCGG802.9750245E-622.49883328
GAGCGGT855.0231974E-621.1799766
CGGTTCA855.032669E-621.1753719
AGAGCGG908.232646E-620.0043985
GAGACCG908.252011E-619.9989627
GCGGTTC1002.0468273E-517.9990658
ATGCCGA1002.0468273E-517.99906522
CGGAAGA1053.096777E-517.1522221
AGCGGTT1104.6379573E-516.3627877
ACCCGCC1004.167558E-415.74918332
TATCTCG1156.783153E-515.651360539
GTATGCC1301.106456E-515.57611445