FastQCFastQC Report
Mon 6 Jun 2016
ERR1378678.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378678.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences744483
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA501.0804797E-940.50012241
CGTATGC552.746674E-936.81829544
TATCTCG552.746674E-936.81829539
GACCGTT551.126773E-732.7273729
CTCGTAT708.1308826E-1032.14295642
ACCGTTG702.8832801E-828.9286630
GCGGTTC801.0547774E-725.3074748
CGGTTCA801.0547774E-725.3074749
AGAGCGG851.8868195E-723.8300045
CGTTGTG851.8917308E-723.823632
TCGTATG851.8917308E-723.823643
CCGTTGT952.1127562E-823.68428231
ATCTCGT1003.6397978E-822.50006940
GAGCGGT955.5119017E-721.3215836
GAGACCG908.24462E-620.00006127
AGCGGTT1151.5967817E-719.5613357
CGGAAGA1302.7470378E-819.0513151
AGACCGT951.3147801E-518.94742628
CCGAGAC951.3147801E-518.94742625
TGCCGAG951.3147801E-518.94742623