Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378814.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 966142 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATTCTGATCTCGTATGCCGTC | 1626 | 0.16829824187334783 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTCTGATCTCGTATGCC | 968 | 0.10019231127515417 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 220 | 0.0 | 39.883797 | 45 |
| TATGCCG | 225 | 0.0 | 38.997486 | 43 |
| ATGCCGT | 230 | 0.0 | 38.149715 | 44 |
| TGCGAGT | 30 | 1.1402191E-4 | 37.497585 | 23 |
| CGTATGC | 345 | 0.0 | 25.433144 | 41 |
| CTCGTAT | 345 | 0.0 | 25.433144 | 39 |
| TCGTATG | 360 | 0.0 | 24.37343 | 40 |
| ATCTCGT | 370 | 0.0 | 23.71469 | 37 |
| GACCGAT | 370 | 0.0 | 23.71469 | 26 |
| TCTCGTA | 370 | 0.0 | 23.71469 | 38 |
| CCGATTC | 380 | 0.0 | 23.682686 | 28 |
| ACCGATT | 385 | 0.0 | 22.79074 | 27 |
| AGACCGA | 390 | 0.0 | 22.49855 | 25 |
| AATGCCG | 600 | 0.0 | 21.7486 | 18 |
| ATGCCGA | 625 | 0.0 | 21.598608 | 19 |
| GAGACCG | 410 | 0.0 | 21.401062 | 24 |
| AGATCGG | 190 | 0.0 | 21.314417 | 25 |
| GCGGTTC | 650 | 0.0 | 20.776497 | 5 |
| CGGTTCA | 665 | 0.0 | 20.646317 | 6 |
| GTATGCC | 425 | 0.0 | 20.64573 | 42 |