Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378651.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1505614 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACATAATCTCGTATGCC | 1940 | 0.1288510866663036 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AACCGCG | 20 | 7.036491E-4 | 44.996742 | 35 |
| ACCGAAC | 240 | 0.0 | 40.30958 | 30 |
| TCGTATG | 250 | 0.0 | 39.597137 | 43 |
| CGTATGC | 260 | 0.0 | 38.07417 | 44 |
| GACCGAA | 255 | 0.0 | 37.93843 | 29 |
| GAGCGGT | 295 | 0.0 | 36.623333 | 6 |
| CTCGTAT | 275 | 0.0 | 35.9974 | 42 |
| AGCGGTT | 300 | 0.0 | 35.24745 | 7 |
| CCGAACA | 275 | 0.0 | 35.179276 | 31 |
| AGACCGA | 285 | 0.0 | 33.944912 | 28 |
| AGAGCGG | 320 | 0.0 | 33.762135 | 5 |
| ATGCCGA | 310 | 0.0 | 33.38468 | 22 |
| AATGCCG | 310 | 0.0 | 32.658928 | 21 |
| TCTCGTA | 305 | 0.0 | 32.45667 | 41 |
| CGGTTCA | 325 | 0.0 | 31.84385 | 9 |
| CGAACAT | 305 | 0.0 | 31.719017 | 32 |
| CGGAAGA | 335 | 0.0 | 31.591108 | 1 |
| GCGGTTC | 330 | 0.0 | 31.361366 | 8 |
| CCGAGAC | 310 | 0.0 | 30.481665 | 25 |
| TGCCGAG | 325 | 0.0 | 30.459335 | 23 |