Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379173.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 513873 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTACAATCTCGTATGCC | 1069 | 0.20802805362414448 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGCTTAC | 130 | 0.0 | 43.26708 | 32 |
| CGTATGC | 130 | 0.0 | 41.536396 | 44 |
| CCGCTTA | 130 | 0.0 | 41.536396 | 31 |
| GACCGCT | 125 | 0.0 | 41.39794 | 29 |
| ACCGCTT | 135 | 0.0 | 39.998013 | 30 |
| ATCTCGT | 130 | 0.0 | 39.80571 | 40 |
| CTCGTAT | 130 | 0.0 | 39.80571 | 42 |
| GAGACCG | 135 | 0.0 | 38.33143 | 27 |
| AGCGGTT | 150 | 0.0 | 37.509087 | 7 |
| AGACCGC | 140 | 0.0 | 36.96245 | 28 |
| CGGTTCA | 155 | 0.0 | 36.288517 | 9 |
| GCGGTTC | 150 | 0.0 | 36.008724 | 8 |
| GAGCGGT | 150 | 0.0 | 36.008724 | 6 |
| TCTCGTA | 145 | 0.0 | 35.687878 | 41 |
| AAGAGCG | 160 | 0.0 | 33.758175 | 4 |
| AGAGCGG | 160 | 0.0 | 33.758175 | 5 |
| GTATGCC | 160 | 0.0 | 33.74832 | 45 |
| TCGTATG | 165 | 0.0 | 32.725643 | 43 |
| AATCTCG | 160 | 0.0 | 32.34214 | 39 |
| ATGCCGA | 175 | 0.0 | 30.855608 | 22 |