Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379142.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1117337 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTGAAATCTCGTATGCC | 5259 | 0.4706726797734256 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATTGAAATCTCGTATGCCGTC | 3418 | 0.30590591737318285 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 490 | 0.0 | 37.644337 | 43 |
| ATGCCGT | 560 | 0.0 | 33.74218 | 44 |
| TGCCGTC | 605 | 0.0 | 30.4888 | 45 |
| CGGAAGA | 1035 | 0.0 | 27.857038 | 1 |
| GAAGAGC | 1130 | 0.0 | 26.116594 | 3 |
| TCTCGTA | 1095 | 0.0 | 25.473549 | 41 |
| CCGATTG | 1120 | 0.0 | 25.307766 | 31 |
| CTCGTAT | 1125 | 0.0 | 24.994207 | 42 |
| CGTATGC | 1145 | 0.0 | 24.557627 | 44 |
| CGATTGA | 1165 | 0.0 | 24.330214 | 32 |
| TCGTATG | 1165 | 0.0 | 24.136036 | 43 |
| ACCGATT | 1175 | 0.0 | 24.122068 | 30 |
| GTATGCC | 1180 | 0.0 | 23.829224 | 45 |
| AGACCGA | 1180 | 0.0 | 23.63859 | 28 |
| GACCGAT | 1190 | 0.0 | 23.439945 | 29 |
| GAGACCG | 1210 | 0.0 | 23.238415 | 27 |
| AATCTCG | 1220 | 0.0 | 23.047935 | 39 |
| ATCTCGT | 1230 | 0.0 | 22.860556 | 40 |
| CCGAGAC | 1260 | 0.0 | 22.317255 | 25 |
| GATTGAA | 1345 | 0.0 | 21.408636 | 33 |