FastQCFastQC Report
Mon 6 Jun 2016
ERR1379283.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379283.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496762
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGGG450.001225606424.99988729
CCGCCAC802.9692328E-622.4998994
CCCGCCA951.3134273E-518.9472833
TCGTTGG800.001709050816.8749244
AAAGCGC800.001709050816.8749245
CGTTGGA850.00256249315.8822815
GGAAACG1251.3780082E-414.3999369
TTCGTTG1000.007543314713.4999393
AAACGGG1350.004001743611.666615511
GAAACGG1350.004001743611.666615510
CAGCTAA2004.963085E-511.24994917
CATGAGC1750.002330460610.287741
GCTAATT3451.7164348E-79.78256519
AGAATTC2658.202784E-59.339581543
AGCTAAT2050.0086091688.78044918
GGGTTTC2800.00145185158.0372961
CCAGCTA3501.9372127E-47.714251516
AGAGTGT3257.441362E-47.615350742
ACCACCA2700.0094071187.4999676
CTAATTT5452.6758062E-77.431159520