FastQCFastQC Report
Mon 6 Jun 2016
ERR1390716.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390716.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences987143
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGACCGT300.00515629729.98882144
ACGCCCG952.1231244E-823.67538512
GGATCGC500.002269293422.49161712
CCTTCGT1452.1282176E-1020.213021
GCTAGAC1603.8198777E-1119.68116233
CGTTGGA1655.820766E-1119.1303085
TCGTTGG1751.3460522E-1018.0353164
CGCCCGG1507.2814146E-917.99602913
CACGCCC1701.8353603E-917.20121611
ATCTTCG1053.057115E-517.1782365
CTTCGTT1752.6175258E-916.747932
CGGCTAA1652.363231E-816.36002517
CGGGATT1257.6399665E-616.19642614
TTCGTTG1956.2937033E-1016.1855413
TCGTATA850.002568598815.8788499
GACCGGG850.002570335815.8772433
CCGGCTA1855.631591E-915.807322516
CGCCACC2601.0913936E-1114.74189955
GAAACGG2203.5761332E-914.31502210
GGAAACG2203.5761332E-914.3150229