Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378805.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 2198807 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTATTATCTCGTATGCCGTC | 2475 | 0.11256103878148468 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTATTATCTCGTATGCC | 2327 | 0.10583011605838984 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 330 | 0.0 | 32.04241 | 44 |
| TATGCCG | 335 | 0.0 | 31.564882 | 43 |
| TGCCGTC | 365 | 0.0 | 28.969849 | 45 |
| AGATCGG | 330 | 0.0 | 22.498886 | 25 |
| GATCGGA | 335 | 0.0 | 22.16308 | 26 |
| CGCGTAT | 505 | 0.0 | 21.386053 | 29 |
| CCGCGTA | 500 | 0.0 | 21.149916 | 28 |
| AATGCCG | 890 | 0.0 | 20.72931 | 18 |
| ATGCCGA | 895 | 0.0 | 20.613504 | 19 |
| ACCGCGT | 515 | 0.0 | 20.096548 | 27 |
| CGTATGC | 540 | 0.0 | 19.998554 | 41 |
| GACCGCG | 520 | 0.0 | 19.90286 | 26 |
| CTCGTAT | 545 | 0.0 | 19.815983 | 39 |
| TCGGAAG | 390 | 0.0 | 19.038383 | 28 |
| TGCCGAG | 970 | 0.0 | 18.787304 | 20 |
| ATCGGAA | 405 | 0.0 | 18.332842 | 27 |
| AGACCGC | 570 | 0.0 | 18.156996 | 25 |
| GCGTATT | 585 | 0.0 | 18.07685 | 30 |
| CACGCGC | 75 | 0.0011074756 | 18.007708 | 1 |
| GAGACCG | 575 | 0.0 | 17.999517 | 24 |