FastQCFastQC Report
Mon 6 Jun 2016
ERR1379065.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379065.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences654830
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG800.039.37319643
ATCTCGT800.036.5608240
CGTATGC850.034.4101944
CCGATCT850.034.4101931
TATCTCG850.034.4101939
CGATCTA850.034.4101932
GACCGAT900.032.49851229
CTCGTAT1001.8189894E-1229.24866142
CGGAAGA1200.026.2588231
GCGGTTC1058.367351E-1125.7131088
ATGCCGA1058.367351E-1125.71310822
GAGCGGT1159.094947E-1225.441396
ACCGATC1159.094947E-1225.43361930
AGCGGTT1159.094947E-1225.4336197
AGACCGA1201.6370905E-1124.37388428
AGAGCGG1152.6375346E-1023.4843585
CCGAGAC1152.6557245E-1023.47718625
TGCCGAG1152.6557245E-1023.47718623
CGGTTCA1252.910383E-1123.3989289
AATGCCG1204.5110937E-1022.4989721