FastQCFastQC Report
Mon 6 Jun 2016
ERR1379324.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379324.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524106
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCCCG250.002106174435.9996212
CGCCCGG602.4652024E-422.4997613
CCCGGCT1002.0433708E-517.9998115
CCACGCC1257.6110664E-616.1998310
ACCACGC1156.7718574E-515.6520099
CACCACG1156.7718574E-515.6520098
CGTGAGC900.003745799415.0027031
CCGGCTA950.00537123114.21037616
ATGCACC1301.9215982E-413.8473292
GCCCGGC1150.001200346513.69550814
CGGCTAA1000.007544345713.49985717
AGGTTGC2352.1929345E-510.53180336
GAGCCAC2901.9609906E-610.0870624
GGCTAAT2901.963388E-610.086118
GCTAATT4458.4946805E-109.6066419
CACTTGA2902.1491687E-59.310245516
GCCACCA3704.7414505E-79.1215256
GTTGCAG2555.753666E-48.82343638
TACAAGA2050.00861091358.78039526
AGCCACC2350.002700258.616935