FastQCFastQC Report
Mon 6 Jun 2016
ERR1379142.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379142.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1117337
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTGAAATCTCGTATGCC52590.4706726797734256Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATTGAAATCTCGTATGCCGTC34180.30590591737318285Illumina Paired End PCR Primer 2 (96% over 32bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4900.037.64433743
ATGCCGT5600.033.7421844
TGCCGTC6050.030.488845
CGGAAGA10350.027.8570381
GAAGAGC11300.026.1165943
TCTCGTA10950.025.47354941
CCGATTG11200.025.30776631
CTCGTAT11250.024.99420742
CGTATGC11450.024.55762744
CGATTGA11650.024.33021432
TCGTATG11650.024.13603643
ACCGATT11750.024.12206830
GTATGCC11800.023.82922445
AGACCGA11800.023.6385928
GACCGAT11900.023.43994529
GAGACCG12100.023.23841527
AATCTCG12200.023.04793539
ATCTCGT12300.022.86055640
CCGAGAC12600.022.31725525
GATTGAA13450.021.40863633