Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390730.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 786031 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 887 | 0.11284542212711712 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGATCGG | 165 | 0.0 | 32.720516 | 17 |
| GATCGGA | 170 | 0.0 | 31.758148 | 18 |
| CTAACGC | 30 | 0.005153079 | 29.9919 | 44 |
| TCGGAAG | 180 | 0.0 | 29.9919 | 20 |
| GCCGAAG | 30 | 0.005153079 | 29.9919 | 29 |
| GCGGTTC | 190 | 0.0 | 29.59727 | 28 |
| AGCGGTT | 195 | 0.0 | 28.838366 | 27 |
| GAGCGGT | 205 | 0.0 | 27.431616 | 26 |
| ATCGGAA | 200 | 0.0 | 26.994427 | 19 |
| ACCGGAC | 50 | 7.168732E-5 | 26.99271 | 30 |
| CCGGACC | 50 | 7.168732E-5 | 26.99271 | 31 |
| CCGAGAC | 210 | 0.0 | 26.778482 | 45 |
| CGGAAGA | 210 | 0.0 | 25.707342 | 21 |
| ATCTCGT | 55 | 1.3701738E-4 | 24.538828 | 40 |
| CGGACCA | 55 | 1.3701738E-4 | 24.538828 | 32 |
| AGAGCGG | 240 | 0.0 | 23.431171 | 25 |
| CGAGATC | 245 | 0.0 | 22.954445 | 15 |
| AAGAGCG | 245 | 0.0 | 22.952984 | 24 |
| CGGTTCA | 245 | 0.0 | 22.952984 | 29 |
| AGACCGG | 60 | 2.471058E-4 | 22.493925 | 28 |