FastQCFastQC Report
Mon 6 Jun 2016
ERR1379296.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379296.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430384
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC406.7993824E-944.99860844
GACCGTA406.7993824E-944.99860829
CCGTAAC406.7993824E-944.99860831
CGTAACG406.7993824E-944.99860832
CGGATCT451.9239451E-839.9987637
ACGGATC451.9239451E-839.9987636
GTAACGG451.9239451E-839.9987633
AACGGAT504.8681613E-835.99888635
GAGACCG504.8681613E-835.99888627
AGACCGT504.8681613E-835.99888628
ACCGTAA504.8681613E-835.99888630
GAGCGGT551.1229349E-732.7338646
AGAGCGG551.1229349E-732.7338645
CTCGTAT551.12522685E-732.7262642
TAACGGA551.12522685E-732.7262634
TCGTATG551.12522685E-732.7262643
AGCGGTT602.4136898E-729.999077
GCGGTTC654.862777E-727.691458
TCTCGTA654.862777E-727.6914541
CCGAGAC654.862777E-727.6914525