FastQCFastQC Report
Mon 6 Jun 2016
ERR1390740.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390740.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences825713
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGAAGC300.005155002729.9897925
ATCGGAA1004.5474735E-1126.99407819
CCGTCGT507.172601E-526.99080831
CGTCGTA507.172601E-526.99080832
GATCGGA1058.54925E-1125.70864518
ATGTTCG450.001228698524.99148840
AGACCGT551.3709116E-424.53709828
AGATCGG1204.5292836E-1022.49506617
GACCGTC602.472383E-422.49234229
TCGGAAG1204.5292836E-1022.49234220
CGAGATT500.002268557422.49234244
CGTATGC654.2465865E-420.7621644
CCGAGAC1301.2314558E-920.7621645
GTCGTAT654.2465865E-420.7621633
ACCGTCG654.2465865E-420.7621630
GTCGTTT550.003888375420.4972292
TCTCGTA750.001112402217.99387241
CTCGTAT800.001714195116.86925542
GGATCGC800.001714195116.86925543
GAGACCG800.001714195116.86925527