Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378791.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 745606 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCAGTATCTCGTATGCCGTC | 1642 | 0.22022354970319447 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCAGTATCTCGTATGCC | 1496 | 0.20064216221435988 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 160 | 0.0 | 37.965584 | 44 |
| TGCCGTC | 170 | 0.0 | 35.73231 | 45 |
| TATGCCG | 165 | 0.0 | 35.451584 | 43 |
| AGTGCGT | 30 | 0.005146525 | 29.99951 | 29 |
| AGATCGG | 135 | 0.0 | 26.66444 | 25 |
| GATCGGA | 140 | 0.0 | 25.71214 | 26 |
| TTCGTTG | 155 | 0.0 | 23.236334 | 3 |
| TCGTTGG | 155 | 0.0 | 23.234776 | 4 |
| TCGGAAG | 165 | 0.0 | 23.181438 | 28 |
| ATCGGAA | 165 | 0.0 | 21.81636 | 27 |
| CGTATGC | 275 | 0.0 | 21.270952 | 41 |
| AATGCCG | 455 | 0.0 | 21.261963 | 18 |
| ATGCCGA | 455 | 0.0 | 21.261963 | 19 |
| CGTTGGA | 170 | 0.0 | 21.184647 | 5 |
| GACCGTT | 280 | 0.0 | 20.892513 | 29 |
| CGGGATT | 120 | 1.1046723E-8 | 20.62328 | 14 |
| TGCCGAG | 480 | 0.0 | 20.154568 | 20 |
| TATCTCG | 305 | 0.0 | 19.91637 | 36 |
| CCGTTCA | 295 | 0.0 | 19.830185 | 28 |
| CTCGTAT | 295 | 0.0 | 19.828854 | 39 |