FastQCFastQC Report
Mon 6 Jun 2016
ERR1378729.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378729.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences798562
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCCAC1052.3610482E-923.5743484
CGCCCGG855.031825E-621.17511413
ACGCCCG754.6026424E-520.99865712
CGCCACC1401.364242E-1020.8954455
AATCTCG654.2385006E-420.76790218
CCCGCCA1305.7545185E-717.3141733
CCGGCTA1305.781003E-717.30658516
CCCGGCT1501.4221587E-716.49894515
GCGCTCC1004.165098E-415.7499788
GCCCGGC1654.1981548E-714.99904114
CGGCTAA1351.581308E-514.9990417
GAACCCG1351.581308E-514.9990421
CACGCCC1251.3803676E-414.39907811
CCTTCGT1301.9188634E-413.8513381
ACCCGGG1301.9260145E-413.84526723
CTTCGTA1000.00754843413.4999817
AACCCGG1352.651795E-413.332479522
TCGTTGG1300.003017309112.1168854
CGCTCCA1300.003021558512.1146099
TCTTCGT1350.004001549411.6681126