FastQCFastQC Report
Mon 6 Jun 2016
ERR1379208.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379208.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences351172
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGGTTATCTCGTATGCC16430.4678619024295787Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT1750.044.9992942
CGTATGC1800.043.7555444
TCGTATG1800.043.7555443
TCTCGTA1800.043.7493141
AGACCGT1800.043.7493128
ACCGTTG1800.043.7493130
CGTTGGT1850.042.56689532
AATGCCG1850.042.56689521
GAGACCG1850.042.56689527
CCGTTGG1950.041.53780431
CCGAGAC1900.041.44671225
TGCCGAG1950.040.38397623
AGCGGTT1900.040.262527
AGAGCGG1900.040.262525
ATCTCGT2000.039.3743840
GACCGTT2000.039.3743829
AAGAGCG1950.039.230154
ATGCCGA2050.038.4140322
GCGGTTC2000.038.2493978
TATCTCG2100.037.4994139