FastQCFastQC Report
Mon 6 Jun 2016
ERR1378699.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378699.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1186351
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTAGT900.035.0016731
CGTATGC950.033.1580844
GAGCGGT1100.030.6845786
CTCGTAT1050.030.0001742
GACCGTA1050.030.0001729
ACCGTAG1050.030.0001730
TCGTATG1200.028.12515843
CGTAGTT1150.027.39261232
AATGCCG1105.456968E-1226.58993721
GCGGTTC1105.456968E-1226.5888168
TCTCGTA1200.026.25014941
GAGACCG1200.026.24904327
AGCGGTT1200.026.2479367
CGGTTCA1159.094947E-1225.432789
AGAGCGG1301.8189894E-1224.2329485
ATGCCGA1252.910383E-1123.39914522
AGACCGT1353.6379788E-1223.33346428
AAGAGCG1405.456968E-1222.5020244
ACCCACG602.466776E-422.50107634
CGGAAGA1601.8189894E-1221.0974251