Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378776.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1119348 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTCAAATCTCGTATGCC | 1162 | 0.10381043250177784 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTCAAATCTCGTATGCCGTC | 1120 | 0.10005824819448465 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 170 | 0.0 | 38.379875 | 43 |
| ATGCCGT | 195 | 0.0 | 33.45938 | 44 |
| TGCCGTC | 250 | 0.0 | 26.098316 | 45 |
| CGGAAGA | 355 | 0.0 | 25.357275 | 1 |
| CTCGTAT | 370 | 0.0 | 24.323841 | 42 |
| TCTCGTA | 375 | 0.0 | 23.399536 | 41 |
| CGTATGC | 375 | 0.0 | 23.39849 | 44 |
| TCGTATG | 375 | 0.0 | 23.39849 | 43 |
| GACCGCT | 395 | 0.0 | 22.785376 | 29 |
| ACCGCTT | 390 | 0.0 | 22.500559 | 30 |
| CGCTTCA | 390 | 0.0 | 22.500559 | 32 |
| AGACCGC | 390 | 0.0 | 21.92362 | 28 |
| AGATCGG | 105 | 6.105802E-8 | 21.429104 | 25 |
| ATCTCGT | 410 | 0.0 | 21.40297 | 40 |
| CCGCTTC | 415 | 0.0 | 21.145103 | 31 |
| GAGACCG | 415 | 0.0 | 20.602922 | 27 |
| GATCGGA | 110 | 9.980977E-8 | 20.455053 | 26 |
| ATGCCGA | 440 | 0.0 | 19.941896 | 19 |
| AATCTCG | 430 | 0.0 | 19.884214 | 39 |
| CCGAGAC | 440 | 0.0 | 19.4323 | 25 |