Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379407.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1039239 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTAGAATCTCGTATGCC | 8596 | 0.8271437080402101 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGATTAG | 1070 | 0.0 | 43.10697 | 32 |
| GACCGAT | 1065 | 0.0 | 42.88682 | 29 |
| CGTATGC | 1080 | 0.0 | 42.4995 | 44 |
| CCGATTA | 1075 | 0.0 | 42.487873 | 31 |
| ACCGATT | 1080 | 0.0 | 42.29117 | 30 |
| TCTCGTA | 1100 | 0.0 | 41.72678 | 41 |
| ATCTCGT | 1105 | 0.0 | 41.53797 | 40 |
| CTCGTAT | 1105 | 0.0 | 41.53797 | 42 |
| TCGTATG | 1105 | 0.0 | 41.53797 | 43 |
| AGACCGA | 1110 | 0.0 | 41.148167 | 28 |
| GTATGCC | 1120 | 0.0 | 40.78077 | 45 |
| GAGACCG | 1135 | 0.0 | 40.440052 | 27 |
| AATCTCG | 1205 | 0.0 | 38.46428 | 39 |
| CCGAGAC | 1200 | 0.0 | 38.062054 | 25 |
| CGGTTCA | 1220 | 0.0 | 37.80693 | 9 |
| CGGAAGA | 1205 | 0.0 | 37.53429 | 1 |
| GCGGTTC | 1230 | 0.0 | 37.499557 | 8 |
| GATTAGA | 1235 | 0.0 | 37.347736 | 33 |
| GAGCGGT | 1240 | 0.0 | 37.198933 | 6 |
| AGCGGTT | 1250 | 0.0 | 36.899567 | 7 |