FastQCFastQC Report
Mon 6 Jun 2016
ERR1379019.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379019.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1364166
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT61510.45089820447071693Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATGAAATCTCGTATGCCGTC38140.2795847426193Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG5350.037.85444643
ATGCCGT5450.036.7469844
TGCCGTC5500.036.41425345
TCGGAAG8800.033.7473628
ATCGGAA8550.033.68157627
GATCGGA8650.033.55228826
GACCGTA6550.030.91361226
CCGTATG6500.030.80528328
AGATCGG9350.030.7997325
AATGCCG16500.030.40671318
TAGCGCC300.00514402630.0042537
CTCGTAT6900.030.00095239
AGACCGT6750.029.99765425
CGTATGA6700.029.88572329
ATGCCGA16850.029.77511819
CGTATGC6850.029.56298341
TCGTATG6850.029.56298340
TGCCGAG16900.029.55390420
ACCGTAT6950.028.81069827
GTATGCC7050.028.72431842