Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378599.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 871202 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3029 | 0.34768056088025506 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2587 | 0.2969460584342093 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 375 | 0.0 | 42.597553 | 13 |
| AGCCGAT | 395 | 0.0 | 40.440716 | 15 |
| CGTCATA | 395 | 0.0 | 40.440716 | 24 |
| TCGGTAT | 330 | 0.0 | 40.224968 | 23 |
| GACGTCA | 410 | 0.0 | 39.50993 | 22 |
| AGGCGGT | 325 | 0.0 | 39.459274 | 34 |
| TGACGTC | 405 | 0.0 | 39.44218 | 21 |
| ATGACGT | 405 | 0.0 | 39.44218 | 20 |
| GCGGTCT | 335 | 0.0 | 38.952988 | 36 |
| GGCGGTC | 330 | 0.0 | 38.86141 | 35 |
| AATTCGG | 350 | 0.0 | 38.569218 | 20 |
| TTCGGTA | 350 | 0.0 | 38.569218 | 22 |
| GATTCGG | 70 | 0.0 | 38.569214 | 11 |
| GCCGATG | 415 | 0.0 | 38.491764 | 16 |
| ACGTCAT | 415 | 0.0 | 38.491764 | 23 |
| CGGTATT | 345 | 0.0 | 38.476055 | 24 |
| AAGCCGA | 420 | 0.0 | 38.03353 | 14 |
| CGGTCTC | 365 | 0.0 | 36.98418 | 37 |
| GAATTCG | 360 | 0.0 | 36.872883 | 19 |
| TCGGGGA | 355 | 0.0 | 36.758453 | 14 |