Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378863.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 975323 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5618 | 0.5760143050045985 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGATTATCTCGTATGCCGTC | 4569 | 0.4684601921619812 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGATTATCTCGTATGCC | 4067 | 0.41699006380450376 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 600 | 0.0 | 39.368496 | 44 |
| TATGCCG | 620 | 0.0 | 38.461388 | 43 |
| TGCCGTC | 625 | 0.0 | 37.793755 | 45 |
| ATCGGAA | 790 | 0.0 | 33.030827 | 27 |
| AGATCGG | 805 | 0.0 | 32.975918 | 25 |
| TCGGAAG | 850 | 0.0 | 32.288784 | 28 |
| GATCGGA | 810 | 0.0 | 32.21525 | 26 |
| CCGAGAT | 940 | 0.0 | 28.240013 | 22 |
| CGAGATC | 935 | 0.0 | 28.15043 | 23 |
| GAGATCG | 970 | 0.0 | 27.366613 | 24 |
| ATGCCGA | 1945 | 0.0 | 27.064936 | 19 |
| AATGCCG | 1945 | 0.0 | 27.063547 | 18 |
| GTCGGAA | 50 | 7.167861E-5 | 26.994156 | 27 |
| TGCCGAG | 1960 | 0.0 | 26.857807 | 20 |
| GAATGCC | 2055 | 0.0 | 25.614891 | 17 |
| GCCGAGA | 2050 | 0.0 | 24.910519 | 21 |
| CTTCGTA | 85 | 1.8932406E-7 | 23.823257 | 8 |
| GGAATGC | 2215 | 0.0 | 23.764606 | 16 |
| GACCGTC | 1050 | 0.0 | 23.352087 | 26 |
| TCTCGTA | 1035 | 0.0 | 23.255835 | 38 |