FastQCFastQC Report
Mon 6 Jun 2016
ERR1378918.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378918.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences754684
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGCTGATCTCGTATGCC114251.513878656497289Illumina Paired End PCR Primer 2 (97% over 35bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC58670.7774114728813649Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT12110.16046451229918748Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATGCC13950.038.87056445
AGACCGC14100.038.77619628
TCTCGTA13850.038.66386441
CGTATGC14050.038.5939144
TCGTATG14000.038.57103343
ATCTCGT13800.038.47786340
CTCGTAT14050.038.4337742
GAGACCG14250.038.36802327
GACCGCT14350.038.10065529
CCGCTGC14450.037.99268731
ACCGCTG14400.037.9683630
CGCTGCT14700.037.49961532
GCTGATC14700.036.42819636
GATCTCG15000.035.39963539
CGAGACC15800.034.7464826
TGCTGAT15750.034.4282235
CTGATCT16050.033.22395737
CTGCTGA16850.032.71479434
AGATCGG9200.031.30402617
GCTGCTG17950.030.83533533