Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378777.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 933313 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTGATATCTCGTATGCCGTC | 1410 | 0.15107471984211085 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTGATATCTCGTATGCC | 1371 | 0.1468960573783929 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 155 | 0.0 | 37.74036 | 43 |
| TGCCGTC | 155 | 0.0 | 37.74036 | 45 |
| GCGATTA | 25 | 0.002107337 | 35.9985 | 32 |
| ATGCCGT | 175 | 0.0 | 33.42718 | 44 |
| CGTATGC | 295 | 0.0 | 22.880404 | 44 |
| AGACCGC | 300 | 0.0 | 22.499062 | 28 |
| CTCGTAT | 320 | 0.0 | 21.09287 | 42 |
| TATCTCG | 320 | 0.0 | 21.09287 | 39 |
| GACCGCT | 310 | 0.0 | 21.047508 | 29 |
| GAGACCG | 325 | 0.0 | 20.768366 | 27 |
| TCTCGTA | 325 | 0.0 | 20.768366 | 41 |
| TCGTATG | 325 | 0.0 | 20.768366 | 43 |
| ACCGCTT | 315 | 0.0 | 20.713423 | 30 |
| CCGCTTG | 325 | 0.0 | 20.076086 | 31 |
| CGGAAGA | 350 | 0.0 | 19.933083 | 1 |
| ATCTCGT | 350 | 0.0 | 19.284912 | 40 |
| GTATGCC | 350 | 0.0 | 19.284912 | 45 |
| AGATCGG | 145 | 4.771209E-9 | 18.619915 | 17 |
| ACGCCCG | 75 | 0.0011103213 | 17.99925 | 12 |
| CGCTCTT | 75 | 0.0011103213 | 17.99925 | 20 |