FastQCFastQC Report
Mon 6 Jun 2016
ERR1378756.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378756.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences902752
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG300.005147764529.99870717
CGGTTCA654.8732727E-727.6911139
TCGTATG507.158825E-526.99883843
GCGGTTC608.191742E-626.2488698
CGTATGC602.4676594E-422.49903144
CTCGTAT602.4676594E-422.49903142
AGCGGTT702.7030621E-522.4990317
AGACCGA602.4676594E-422.49903128
ACCGAGA654.2384936E-420.76833330
GAGACCG654.2384936E-420.76833327
GACCGAG706.983904E-419.28488329
ATCTCGT750.001110293717.99922440
GAGCGGT901.8625731E-417.5031246
AGAGCGG901.8625731E-417.5031245
GACTCCG800.001706520116.8808173
TCTCGTA800.001710954116.87427341
GCGCTTT850.002565330815.88166812
ATGCCGA1004.1671703E-415.74932222
CGGAGGT1004.1671703E-415.74932233
TGCCGAG1108.5886277E-414.31756623