Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379203.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 351761 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTCTTATCTCGTATGCC | 1133 | 0.3220936942981172 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 170 | 0.0 | 42.351204 | 42 |
| TCTCGTA | 175 | 0.0 | 41.141167 | 41 |
| TCGTATG | 175 | 0.0 | 41.141167 | 43 |
| CGTATGC | 180 | 0.0 | 39.998356 | 44 |
| GACCGAG | 180 | 0.0 | 39.998356 | 29 |
| TATCTCG | 190 | 0.0 | 39.077343 | 39 |
| GAGACCG | 185 | 0.0 | 38.91732 | 27 |
| CCGAGTC | 185 | 0.0 | 38.91732 | 31 |
| AGACCGA | 185 | 0.0 | 38.91732 | 28 |
| CGGAAGA | 190 | 0.0 | 37.914738 | 1 |
| ATCTCGT | 190 | 0.0 | 37.89318 | 40 |
| CGAGTCT | 190 | 0.0 | 37.89318 | 32 |
| CGGTTCA | 190 | 0.0 | 37.89318 | 9 |
| GCGGTTC | 195 | 0.0 | 36.921562 | 8 |
| CCGAGAC | 195 | 0.0 | 36.921562 | 25 |
| AGAGCGG | 200 | 0.0 | 36.00876 | 5 |
| ACCGAGT | 200 | 0.0 | 35.998524 | 30 |
| AATGCCG | 200 | 0.0 | 35.998524 | 21 |
| CGAGACC | 200 | 0.0 | 35.998524 | 26 |
| AGCGGTT | 205 | 0.0 | 35.120506 | 7 |