FastQCFastQC Report
Mon 6 Jun 2016
ERR1379260.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379260.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences707115
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC401.5577085E-533.75636744
AGACCGC401.5599726E-533.74920328
CTCGTAT551.3657258E-424.55008542
TCTCGTA551.3657258E-424.55008541
TCGTATG551.3657258E-424.55008543
ATCTCGT551.367694E-424.54487640
GCGGTTC551.367694E-424.5448768
GACCGCA551.367694E-424.54487629
GAGCGGT551.367694E-424.5448766
ATGCCGA551.367694E-424.54487622
ACCGCAG651.5229514E-524.23019830
AGCGGTT602.4666003E-422.4994687
AATGCCG602.4666003E-422.49946821
CCGAGAC654.2366819E-420.76874225
CGCAGGT654.2366819E-420.76874232
CGGAAGA908.245557E-619.9995291
TGCCGAG807.559113E-519.68703723
GAGACCG706.98094E-419.2852627
CGCCACC1102.2539916E-618.4086575
TCGTTGG1354.2664396E-818.3329014