FastQCFastQC Report
Mon 6 Jun 2016
ERR1378822.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378822.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences801809
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTTCATCTCGTATGCCGTC13710.17098835258771106Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1850.032.83665543
ATGCCGT2050.028.53555744
TGCCGTC2150.027.2083245
ATGCCCG500.00226449122.4991912
GACCGTA2700.021.66588626
CCGTAGT2700.021.66588628
GAGACCG2700.021.66588624
AGACCGT2700.021.66588625
CTCGTAT2750.021.27196139
CATCTCG2900.020.94752136
ACCGTAG2800.020.89210327
GATCGGA1750.020.57068826
CGTAGTT2850.020.52557629
ATCTCGT3150.019.9992837
AGATCGG1800.019.9992825
TCTCGTA3050.019.91731538
TCGTATG2950.019.82979440
CGGTTCA5000.019.8042286
GTATGCC3000.019.49929642
GCGGTTC5050.019.1625065