FastQCFastQC Report
Mon 6 Jun 2016
ERR1378728.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378728.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences746277
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGATA250.002107359535.99748214
CCGTAGC401.5605836E-533.7476431
GGTTGCG300.005147876729.997931
GTTGCGG300.005147876729.997932
CGTATGC507.158499E-526.99811244
AGCGGTT507.158499E-526.9981127
CGTAGCA507.158499E-526.99811232
ACCGTAG507.158499E-526.99811230
GCGGTTC551.3682246E-424.5437378
GACCGTA551.3682246E-424.54373729
ATGCCGA551.3682246E-424.54373722
AATGCCG651.5236463E-524.22907321
CTCGTAT602.4675528E-422.49842542
TCTCGTA602.4675528E-422.49842541
CCGAGAC602.4675528E-422.49842525
TCGTATG602.4675528E-422.49842543
TGCCGAG955.5300916E-721.31429923
GAGCGGT654.2287385E-420.7747386
AGACCGT654.238313E-420.76777628
AGAGCGG706.964742E-419.292125