Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378840.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 886049 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3156 | 0.35618797606001473 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTCAAATCTCGTATGCC | 2451 | 0.27662127038120915 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTCAAATCTCGTATGCCGTC | 2421 | 0.2732354531182813 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 265 | 0.0 | 39.05234 | 43 |
| AGATCGG | 475 | 0.0 | 34.101543 | 25 |
| TGCCGTC | 320 | 0.0 | 33.04327 | 45 |
| GATCGGA | 495 | 0.0 | 32.7237 | 26 |
| ATGCCGT | 320 | 0.0 | 32.34022 | 44 |
| ATCGGAA | 510 | 0.0 | 31.761242 | 27 |
| TCGGAAG | 520 | 0.0 | 31.58309 | 28 |
| CCGAGAT | 595 | 0.0 | 27.98014 | 22 |
| AATGCCG | 1065 | 0.0 | 25.770382 | 18 |
| TGCCGAG | 1070 | 0.0 | 25.23089 | 20 |
| GAGATCG | 650 | 0.0 | 24.920357 | 24 |
| ATGCCGA | 1095 | 0.0 | 24.654842 | 19 |
| CGAGATC | 665 | 0.0 | 24.358244 | 23 |
| TGAACCG | 85 | 1.8956598E-7 | 23.819584 | 10 |
| GCCGAGA | 1175 | 0.0 | 22.78475 | 21 |
| ACCGCTC | 70 | 2.7055474E-5 | 22.496275 | 13 |
| GGAATGC | 1235 | 0.0 | 22.22304 | 16 |
| CTCGTAT | 550 | 0.0 | 22.0885 | 42 |
| GAATGCC | 1265 | 0.0 | 21.873848 | 17 |
| TCGTATG | 560 | 0.0 | 21.694061 | 43 |