Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378982.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 687832 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4501 | 0.6543749055001802 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGCAGATCTCGTATGCCGTC | 2316 | 0.33671012689145025 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGCAGATCTCGTATGCC | 1238 | 0.17998581048860768 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 330 | 0.0 | 35.46675 | 43 |
| GATCGGA | 585 | 0.0 | 34.612198 | 26 |
| AGATCGG | 590 | 0.0 | 34.318874 | 25 |
| ATCGGAA | 590 | 0.0 | 33.937553 | 27 |
| ATGCCGT | 340 | 0.0 | 33.76162 | 44 |
| TCGGAAG | 620 | 0.0 | 33.38402 | 28 |
| GAGATCG | 640 | 0.0 | 31.637712 | 24 |
| TGCCGTC | 370 | 0.0 | 31.024189 | 45 |
| CCGAGAT | 670 | 0.0 | 30.221098 | 22 |
| CGAGATC | 670 | 0.0 | 30.221098 | 23 |
| AATGCCG | 1145 | 0.0 | 28.490828 | 18 |
| ATGCCGA | 1155 | 0.0 | 28.244154 | 19 |
| CGGAAGA | 735 | 0.0 | 27.854578 | 29 |
| TGCCGAG | 1175 | 0.0 | 27.763401 | 20 |
| GCCGAGA | 1205 | 0.0 | 26.698788 | 21 |
| GAATGCC | 1235 | 0.0 | 26.414572 | 17 |
| GGAATGC | 1260 | 0.0 | 25.890472 | 16 |
| CCGTAGC | 465 | 0.0 | 25.642801 | 28 |
| GACCGTA | 475 | 0.0 | 24.62931 | 26 |
| CGTAGCA | 475 | 0.0 | 24.62931 | 29 |