FastQCFastQC Report
Mon 6 Jun 2016
ERR1390769.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390769.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences838758
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGCAT300.005153381329.99177420
ACGCCCG651.5263522E-524.22412312
TACGAAA600.006519377718.74485844
TCGTTGG1607.9853635E-1018.3100744
CTCGATC1002.0482932E-517.9972110
TCGATCT1104.641267E-516.361111
CGTTGGA1803.8162398E-916.2775675
GGTTTCG850.002535549715.9092956
GTTTCGC950.0053799414.20832357
CGCCCGG1150.001203251513.69271313
TTCGTTG1709.244093E-613.2561623
CCGGCTA1200.00165843613.12218216
GCGATCT1200.00165843613.12218216
AACCCGG1555.8210993E-513.06093322
CACGCCC1902.0630014E-613.02429711
CCTTCGT1403.5569965E-412.8774151
CGGCTAA1250.002254271412.59729517
GAATCGC1250.00225528112.59654312
GAAACGG2155.999391E-712.55619310
ACCACGC1801.6946602E-512.4980639