FastQCFastQC Report
Mon 6 Jun 2016
ERR1379394.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379394.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences820580
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACAATATCTCGTATGCC19950.24312071949109168Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGAAC2400.040.311330
TCTCGTA2400.040.311341
GACCGAA2500.038.6988529
TATCTCG2500.038.6988539
TCGTATG2550.037.9446743
AGACCGA2650.037.3573828
CGAACAA2600.037.21042632
CCGAACA2600.037.21042631
CGTATGC2700.035.83663644
CTCGTAT2700.035.83663642
GCGGTTC3050.034.6710978
AGCGGTT3050.034.6710977
ATCTCGT2850.033.94635840
AATGCCG2850.033.94635821
ATGCCGA2850.033.94635822
CGGTTCA3100.033.38619
GAGACCG2900.033.36107327
GAGCGGT3200.033.049926
GTATGCC3000.033.00303645
CCGAGAC2950.032.7956325