Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378902.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1166568 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACAGCATCTCGTATGCC | 10516 | 0.9014476652882644 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 5884 | 0.5043855137463054 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1343 | 0.11512402191728213 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTACAG | 1360 | 0.0 | 37.223587 | 32 |
| TCTCGTA | 1340 | 0.0 | 36.605385 | 41 |
| CCGTACA | 1385 | 0.0 | 36.55168 | 31 |
| CTCGTAT | 1345 | 0.0 | 36.469307 | 42 |
| CATCTCG | 1365 | 0.0 | 35.934956 | 39 |
| CGTATGC | 1385 | 0.0 | 35.576973 | 44 |
| TCGTATG | 1375 | 0.0 | 35.50845 | 43 |
| ATCTCGT | 1385 | 0.0 | 35.41604 | 40 |
| GACCGTA | 1430 | 0.0 | 35.401455 | 29 |
| ACCGTAC | 1435 | 0.0 | 35.278107 | 30 |
| GTATGCC | 1400 | 0.0 | 35.03508 | 45 |
| AGACCGT | 1455 | 0.0 | 34.793182 | 28 |
| GAGACCG | 1475 | 0.0 | 34.62649 | 27 |
| GTACAGC | 1495 | 0.0 | 34.012764 | 33 |
| AGATCGG | 885 | 0.0 | 30.762154 | 17 |
| GCATCTC | 1595 | 0.0 | 30.75311 | 38 |
| CGAGACC | 1675 | 0.0 | 30.223335 | 26 |
| TACAGCA | 1690 | 0.0 | 30.088213 | 34 |
| ATCGGAA | 905 | 0.0 | 30.082329 | 19 |
| GATCGGA | 925 | 0.0 | 29.675138 | 18 |