Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378588.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 819283 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3774 | 0.4606466874083803 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2919 | 0.35628714375862797 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 450 | 0.0 | 42.99539 | 13 |
| CGTCATA | 460 | 0.0 | 41.571632 | 24 |
| ACGTCAT | 465 | 0.0 | 41.124626 | 23 |
| AGCCGAT | 475 | 0.0 | 40.73248 | 15 |
| GCCGATG | 475 | 0.0 | 40.73248 | 16 |
| GATGACG | 485 | 0.0 | 39.89263 | 19 |
| CGATGAC | 485 | 0.0 | 39.89263 | 18 |
| TTCGGTA | 345 | 0.0 | 39.778347 | 22 |
| CCGATGA | 490 | 0.0 | 39.485565 | 17 |
| GACGTCA | 485 | 0.0 | 39.428764 | 22 |
| TATGCCG | 80 | 0.0 | 39.37078 | 43 |
| TGACGTC | 495 | 0.0 | 39.086723 | 21 |
| GCGGTCT | 340 | 0.0 | 39.039936 | 36 |
| AAGCCGA | 500 | 0.0 | 38.695854 | 14 |
| ATGACGT | 500 | 0.0 | 38.695854 | 20 |
| AATTCGG | 365 | 0.0 | 38.21508 | 20 |
| TCGGGGA | 360 | 0.0 | 38.120914 | 14 |
| CGGTATT | 360 | 0.0 | 38.120914 | 24 |
| CTCGGGG | 320 | 0.0 | 37.964684 | 13 |
| GGCGGTC | 350 | 0.0 | 37.924507 | 35 |