FastQCFastQC Report
Mon 6 Jun 2016
ERR1379165.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379165.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences676735
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGTACATCTCGTATGCC14230.21027433190244335Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTT1350.038.3324529
CGTATGC1400.036.96616444
TCGTATG1400.036.96343643
AGACCGT1450.035.68883528
TCTCGTA1500.034.49920741
ACCGTTG1500.034.49920730
GAGCGGT1700.034.4135176
AGCGGTT1750.033.430277
CCGTTGT1550.033.3863331
GCGGTTC1800.032.5016568
ATCTCGT1600.032.34300640
CGTTGTA1600.032.34300632
AGAGCGG1950.032.3117265
AAGAGCG2000.031.5039314
CTCGTAT1650.031.36291542
GAGACCG1700.030.44047727
CGGGTAA300.00514635829.99931130
CGGTTCA2000.029.2493279
GTATGCC1850.029.19067445
ATGCCGA1900.028.420422