Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378981.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 989284 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3776 | 0.38169019209852784 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGCATATCTCGTATGCCGTC | 2137 | 0.2160148147549137 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGCATATCTCGTATGCC | 1017 | 0.10280162218331641 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGATCGG | 500 | 0.0 | 35.097553 | 25 |
| ATGCCGT | 340 | 0.0 | 35.07818 | 44 |
| TCGGAAG | 520 | 0.0 | 35.045635 | 28 |
| TATGCCG | 350 | 0.0 | 34.075947 | 43 |
| GATCGGA | 525 | 0.0 | 33.426243 | 26 |
| ATCGGAA | 525 | 0.0 | 33.426243 | 27 |
| AATGCCG | 970 | 0.0 | 30.616425 | 18 |
| TGCCGTC | 400 | 0.0 | 30.379025 | 45 |
| ATGCCGA | 1025 | 0.0 | 29.193089 | 19 |
| TGCCGAG | 1030 | 0.0 | 28.832941 | 20 |
| GAATGCC | 1055 | 0.0 | 28.362953 | 17 |
| AGACCGG | 455 | 0.0 | 26.206968 | 25 |
| CGGAGCA | 455 | 0.0 | 26.206968 | 29 |
| CGAGATC | 680 | 0.0 | 25.807026 | 23 |
| ACCGGAG | 465 | 0.0 | 25.643375 | 27 |
| CCGGAGC | 465 | 0.0 | 25.643375 | 28 |
| CGGAAGA | 715 | 0.0 | 25.487736 | 29 |
| CCGAGAT | 690 | 0.0 | 25.433012 | 22 |
| TCGTATG | 480 | 0.0 | 25.31074 | 40 |
| GCCGAGA | 1170 | 0.0 | 25.190554 | 21 |