Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378847.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1000631 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2980 | 0.29781208057715586 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTTATATCTCGTATGCCGTC | 2271 | 0.22695679026534257 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTTATATCTCGTATGCC | 2191 | 0.2189618350820632 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 310 | 0.0 | 39.918205 | 43 |
| ATGCCGT | 390 | 0.0 | 31.729853 | 44 |
| TGCCGTC | 430 | 0.0 | 30.871202 | 45 |
| GATCGGA | 410 | 0.0 | 29.080164 | 26 |
| TCGGAAG | 425 | 0.0 | 28.584553 | 28 |
| ATCGGAA | 420 | 0.0 | 28.387781 | 27 |
| AGATCGG | 465 | 0.0 | 25.156794 | 25 |
| TCGTATG | 525 | 0.0 | 23.999308 | 40 |
| CTCGTAT | 520 | 0.0 | 23.797392 | 39 |
| ATGCCGA | 1025 | 0.0 | 23.703077 | 19 |
| TGCCGAG | 1030 | 0.0 | 23.588015 | 20 |
| CGTATGC | 525 | 0.0 | 23.570747 | 41 |
| TCTCGTA | 530 | 0.0 | 23.344881 | 38 |
| AATGCCG | 1075 | 0.0 | 23.228405 | 18 |
| ATCTCGT | 560 | 0.0 | 22.49935 | 37 |
| CGGCTTA | 550 | 0.0 | 22.4971 | 29 |
| TATCTCG | 565 | 0.0 | 22.300241 | 36 |
| GCCGAGA | 1130 | 0.0 | 21.89874 | 21 |
| CCGAGAT | 555 | 0.0 | 21.482645 | 22 |
| GTATGCC | 590 | 0.0 | 21.355316 | 42 |