Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379091.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 936605 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATACTATCTCGTATGCCGTC | 2514 | 0.26841624804480013 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATACTATCTCGTATGCC | 2016 | 0.2152454876922502 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 315 | 0.0 | 35.710175 | 43 |
| ATGCCGT | 340 | 0.0 | 33.746117 | 44 |
| TGCCGTC | 380 | 0.0 | 30.193893 | 45 |
| CTCGTAT | 525 | 0.0 | 21.854628 | 39 |
| TCTCGTA | 525 | 0.0 | 21.854628 | 38 |
| CGTATGC | 520 | 0.0 | 21.632124 | 41 |
| CCGCATA | 525 | 0.0 | 21.426105 | 28 |
| CGCATAC | 535 | 0.0 | 21.02674 | 29 |
| TCGTATG | 540 | 0.0 | 20.830936 | 40 |
| TATCTCG | 570 | 0.0 | 20.130337 | 36 |
| CGGAAGA | 555 | 0.0 | 19.48114 | 1 |
| ATCTCGT | 595 | 0.0 | 19.284525 | 37 |
| TGAACCG | 70 | 6.9900684E-4 | 19.282467 | 10 |
| GCATACT | 590 | 0.0 | 19.06662 | 30 |
| GAGACCG | 630 | 0.0 | 18.926394 | 24 |
| AGACCGC | 595 | 0.0 | 18.905388 | 25 |
| GACCGCA | 595 | 0.0 | 18.904379 | 26 |
| AATGCCG | 750 | 0.0 | 18.896816 | 18 |
| GTATGCC | 605 | 0.0 | 18.592901 | 42 |
| ACCGCAT | 605 | 0.0 | 18.591908 | 27 |