Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378682.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 894557 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTCATTATCTCGTATGCC | 949 | 0.10608602917421696 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGGT | 115 | 0.0 | 41.085426 | 29 |
| ACCGGTC | 125 | 0.0 | 37.79859 | 30 |
| TCTCGTA | 125 | 0.0 | 37.79859 | 41 |
| CCGGTCA | 125 | 0.0 | 37.79859 | 31 |
| CGGTCAT | 125 | 0.0 | 37.79859 | 32 |
| CTCGTAT | 130 | 0.0 | 36.3448 | 42 |
| CGTATGC | 135 | 0.0 | 35.000652 | 44 |
| TCGTATG | 140 | 0.0 | 33.74874 | 43 |
| TATCTCG | 155 | 0.0 | 33.38772 | 39 |
| GAGCGGT | 150 | 0.0 | 31.51292 | 6 |
| GAGACCG | 150 | 0.0 | 31.498827 | 27 |
| AGACCGG | 150 | 0.0 | 31.498827 | 28 |
| CCGAGAC | 150 | 0.0 | 31.498827 | 25 |
| ATCTCGT | 165 | 0.0 | 31.36422 | 40 |
| ATGCCGA | 155 | 0.0 | 30.479328 | 22 |
| AGAGCGG | 160 | 0.0 | 29.543362 | 5 |
| AGCGGTT | 160 | 0.0 | 29.52685 | 7 |
| GCGGTTC | 165 | 0.0 | 28.632095 | 8 |
| CGGTTCA | 170 | 0.0 | 27.789974 | 9 |
| CGGAAGA | 185 | 0.0 | 25.555304 | 1 |