FastQCFastQC Report
Mon 6 Jun 2016
ERR1378925.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378925.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences892770
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCACTCAATCTCGTATGCC121961.366085329928201Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC65360.7321034532970417Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT13630.15267090067990635Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA16050.036.30777741
CGTATGC16200.036.24936744
CCGCACT16450.036.24556731
CTCGTAT16100.036.19502342
CGCACTC16650.035.81018432
ATCTCGT16350.035.7791940
TCGTATG16350.035.7791943
GTATGCC16500.035.59028645
GACCGCA17050.034.838129
AGACCGC17300.034.33466328
AATCTCG17150.034.24138639
ACCGCAC17450.034.1684630
GAGACCG17550.033.7173627
GCACTCA18200.032.7604233
AGATCGG9350.032.726717
ACTCAAT18500.032.4724135
TCAATCT18450.032.1945637
GCGCCCA352.820164E-432.142312
CTCAATC19000.031.7362936
CACTCAA18900.031.66611534