FastQCFastQC Report
Mon 6 Jun 2016
ERR1379058.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379058.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences633919
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGACT650.045.001530
CCGACTG700.041.78380631
GACCGAC750.039.001329
GAGACCG750.039.001327
AGACCGA800.036.56371728
GCGGTTC800.036.5608338
ACGATGT250.002105237536.004044
GAGCGGT850.034.4156276
CGGTTCA850.034.41029
CGTATGC803.6379788E-1233.7484644
TATCTCG855.456968E-1231.7632639
CCGAGAC950.030.790525
CGACTGA950.030.790532
AGCGGTT950.030.7880737
GCGACTC300.005146683729.99863443
AATGCCG901.2732926E-1129.99863221
TCTCGTA901.2732926E-1129.99863241
TGCCGAG1050.029.99863223
TCGTATG952.3646862E-1128.41975843
AGAGCGG1053.6379788E-1227.860275