Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379199.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 406480 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACTTATCTCGTATGCC | 1511 | 0.37172800629797287 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GAGCGGT | 155 | 0.0 | 42.095623 | 6 |
| CTCGTAT | 150 | 0.0 | 41.99885 | 42 |
| TCTCGTA | 155 | 0.0 | 40.64405 | 41 |
| AATGCCG | 150 | 0.0 | 40.498894 | 21 |
| GCGGTTC | 165 | 0.0 | 39.54437 | 8 |
| CGTATGC | 160 | 0.0 | 39.373924 | 44 |
| CGGAAGA | 170 | 0.0 | 38.395473 | 1 |
| AGAGCGG | 170 | 0.0 | 38.386024 | 5 |
| CGGTTCA | 170 | 0.0 | 38.381306 | 9 |
| AGCGGTT | 170 | 0.0 | 38.381306 | 7 |
| TATCTCG | 165 | 0.0 | 38.18077 | 39 |
| AAGAGCG | 180 | 0.0 | 37.5082 | 4 |
| TCGTATG | 170 | 0.0 | 37.05781 | 43 |
| CCGAGAC | 165 | 0.0 | 36.817173 | 25 |
| ATCTCGT | 175 | 0.0 | 35.999016 | 40 |
| CGTGACT | 175 | 0.0 | 35.999016 | 32 |
| CCGTGAC | 175 | 0.0 | 35.999016 | 31 |
| ACCGTGA | 175 | 0.0 | 35.999016 | 30 |
| TGCCGAG | 170 | 0.0 | 35.734318 | 23 |
| AGACCGT | 180 | 0.0 | 34.999043 | 28 |