FastQCFastQC Report
Mon 6 Jun 2016
ERR1378603.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378603.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences591320
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA35470.599844415883109No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA25490.43106947169045523No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG3350.043.65228713
TCGGTAT3050.042.78254323
AGCCGAT3500.041.78147515
ATTCGGT3200.041.48016721
ATGACGT3600.041.24581520
AAGCCGA3550.041.19300514
GCGGTCT3200.040.77711536
CGGTATT3200.040.77711524
CGTCATA3650.040.680824
GGCGGTC3250.040.14977335
CCTCGGG3000.039.74596412
ACGTCAT3750.039.5959823
CTCGGGG2900.039.5649513
TTCGGTA3300.039.54144322
CGTATCT800.039.37100629
TGACGTC3800.039.0749821
AGGCGGT3350.038.9512734
AATTCGG3400.038.37845620
CCGATGA3900.038.0730617
CGATGAC3900.038.0730618