Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390757.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 470552 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 916 | 0.19466498920416872 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGAGAC | 205 | 0.0 | 30.724014 | 45 |
| AGATCGG | 215 | 0.0 | 30.341242 | 17 |
| GATCGGA | 215 | 0.0 | 30.341242 | 18 |
| CGAGATC | 215 | 0.0 | 30.341242 | 15 |
| ATCGGAA | 230 | 0.0 | 28.362465 | 19 |
| GAGATCG | 230 | 0.0 | 28.362465 | 16 |
| CCGAGAT | 235 | 0.0 | 27.75901 | 14 |
| TCGGAAG | 240 | 0.0 | 27.180696 | 20 |
| CGGAAGA | 255 | 0.0 | 25.581831 | 21 |
| GCGGTTC | 275 | 0.0 | 23.721334 | 28 |
| GAGCGGT | 275 | 0.0 | 23.721334 | 26 |
| AGCGGTT | 280 | 0.0 | 23.297739 | 27 |
| GGCGACA | 50 | 0.0022659306 | 22.49437 | 29 |
| AGAGCGG | 295 | 0.0 | 22.113108 | 25 |
| CGGTTCA | 300 | 0.0 | 21.744556 | 29 |
| AAGAGCG | 305 | 0.0 | 21.388088 | 24 |
| TGGGCGA | 55 | 0.003938842 | 20.449427 | 27 |
| CCCGTCT | 70 | 6.902323E-4 | 19.315779 | 1 |
| GTTCAGC | 350 | 0.0 | 19.280888 | 31 |
| GAATCGC | 60 | 0.006514321 | 18.745308 | 12 |