FastQCFastQC Report
Mon 6 Jun 2016
ERR1378707.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378707.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences753514
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC253.8895225E-545.044
TCGTATG301.1395486E-437.50000443
GCGTTAT300.005146146330.00000236
CCCGTGA300.005146146330.00000218
GCGGTTC406.1641575E-428.1258
ACCGAGT406.1641575E-428.12530
CTCGTAT450.001226162825.042
ATCTCGT500.00226389222.540
AGCGGTT500.00226389222.57
TCTCGTA500.00226389222.541
CCGAGAC654.236364E-420.76923225
CGGTTCA550.003935298420.4545469
CGTTATT600.00650846318.75000237
GAGACCG600.00650846318.75000227
AGACCGA600.00650846318.75000228
ATGCCGA600.00650846318.75000222
TCGTATA750.001109740918.010
TTCGAGA1053.1101223E-517.14285943
CGCCACT850.002564065615.8823539
GTATGCC1056.033438E-415.00000145