FastQCFastQC Report
Mon 6 Jun 2016
ERR1379122.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379122.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1351938
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAGAATCTCGTATGCCGTC37440.2769357766406447Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAGAATCTCGTATGCC32690.24180102933714417Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG5100.036.17531243
ATGCCGT6100.030.24493244
TGCCGTC6600.028.29454845
CGTATGC8150.022.63731241
CTCGTAT8150.022.63731239
TAAACCG500.002253090522.5201053
TCGTATG8400.021.96358340
TCTCGTA8450.021.82958238
CGGAAGA7550.021.4832861
GACCGTC8700.021.20151126
ACCGTCG9000.020.99466727
AGACCGT8800.020.70573425
CCGTCGA9450.019.9971428
CGAGAAT9300.019.83807432
GCGGTTC12500.019.6353535
CGGTTCA12550.019.5563986
TCGAGAA9550.019.55434631
GTCGAGA9600.019.4517830
GTATGCC9600.019.21813242
AATGCCG12650.019.02678718