FastQCFastQC Report
Mon 6 Jun 2016
ERR1390777.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390777.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences913882
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCGTA453.8562575E-1044.9836431
CGCGTAG453.8562575E-1044.9836432
TCTCGTA606.4555934E-933.73588641
GACCGCG651.4078978E-831.1425229
GCGTAGA651.4078978E-831.1425233
ATCTCGT651.4086254E-831.14081840
TGCTCGA300.00508726230.0713634
AGACCGC702.8934664E-828.91963628
ACCGCGT702.8951035E-828.91805330
CTCGTAT709.338055E-725.7035342
ACCGCGC602.4712193E-422.4942829
CGTAGAA903.2986827E-722.4905934
CCGAGAC1009.082396E-720.2426425
CGTATGC908.278086E-619.99163444
TCGTATG908.278086E-619.99163443
GAGCGGT1051.4109028E-619.3337146
CACCGCG600.006519056418.7452358
GCGGTTC1102.2604363E-618.4044118
AATCTCG1102.2639852E-618.40139239
GAGACCG1153.4572695E-617.60325627