FastQCFastQC Report
Mon 6 Jun 2016
ERR1378995.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378995.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1192534
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT60010.503214164124461Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCCGTC33900.2842686246262161Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA8050.036.61258726
ATCGGAA8050.036.61258727
GTCCCGT250.002107795335.99772316
TATGCCG4150.035.7928743
AGATCGG8250.035.72500625
TCGGAAG8700.035.17018528
ATGCCGT4450.033.37986844
TGCCGTC4550.032.64624445
CCGAGAT9550.032.03985622
AATGCCG14750.031.26920718
TGCCGAG14850.031.05733720
ATGCCGA14950.030.85088519
CGAGATC9850.030.37878623
GCCGAGA15350.029.31287421
CGGAAGA10550.029.00168629
GAGATCG10550.028.3631324
GAATGCC16700.027.75273117
CGGATAC5400.027.49710729
TACGATC5550.026.75393933
GACCGGA5600.026.51617826