Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378893.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 793779 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAAAAGATCTCGTATGCC | 11211 | 1.4123578477132803 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 4279 | 0.5390669191298838 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 881 | 0.11098807098701277 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| GGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAAAAGATCTCGTATGCCG | 873 | 0.10998023379303308 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 1530 | 0.0 | 38.822876 | 42 |
| TCTCGTA | 1535 | 0.0 | 38.69642 | 41 |
| CGTATGC | 1555 | 0.0 | 38.198715 | 44 |
| TCGTATG | 1565 | 0.0 | 37.954636 | 43 |
| CGCAAAA | 1595 | 0.0 | 37.805008 | 32 |
| CCGCAAA | 1595 | 0.0 | 37.663944 | 31 |
| ATCTCGT | 1585 | 0.0 | 37.47571 | 40 |
| GTATGCC | 1585 | 0.0 | 37.33376 | 45 |
| GACCGCA | 1615 | 0.0 | 37.197517 | 29 |
| AGACCGC | 1620 | 0.0 | 37.08271 | 28 |
| ACCGCAA | 1635 | 0.0 | 36.742504 | 30 |
| GAGACCG | 1635 | 0.0 | 36.742504 | 27 |
| CGAGACC | 1715 | 0.0 | 35.29095 | 26 |
| GATCTCG | 1700 | 0.0 | 34.94059 | 39 |
| AAAGATC | 1800 | 0.0 | 33.37444 | 36 |
| GCAAAAG | 1840 | 0.0 | 32.771187 | 33 |
| AGATCTC | 1820 | 0.0 | 32.76044 | 38 |
| AAGATCT | 1855 | 0.0 | 32.50619 | 37 |
| AGATCGG | 665 | 0.0 | 31.803978 | 17 |
| GATCGGA | 700 | 0.0 | 30.535202 | 18 |