FastQCFastQC Report
Mon 6 Jun 2016
ERR1378719.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378719.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences927210
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGCGC352.8146687E-432.1531455
TCTCGTA450.001226787524.99856241
GATCGCG550.00392868320.4610924
GAGCGGT550.00392868320.4610926
CGTATGC550.003937284520.4533744
CTCGTAT550.003937284520.4533742
AGACCGT550.003937284520.4533728
TCGTATG550.003937284520.4533743
CGTCATG550.003937284520.4533732
TATCTCG750.001110431517.99896439
CGCCCAG1305.783095E-717.30669813
CGTTGGA1351.5761174E-515.0048015
ATCTTCG950.005363577514.2150755
CGGAAGC1000.00755244213.49922425
ACGCCCA1000.00755244213.49922412
CCCGGGA1403.6070347E-412.85640335
ACCACGC1651.0430388E-412.2720229
TCGTTGG1506.4295746E-412.0038414
CCACGCC1751.8047092E-411.57076410
GAAGCAT6050.011.52826327