FastQCFastQC Report
Mon 6 Jun 2016
ERR1379201.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379201.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496551
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACCTAATCTCGTATGCC17890.36028524763820835Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTACCT2200.042.95387332
CCGTACC2250.041.99934431
ACCGTAC2250.041.99934430
GACCGTA2200.041.9311629
AGACCGT2200.041.9311628
CTCGTAT2300.041.0863142
TCTCGTA2300.041.0863141
ATCTCGT2350.040.2121440
CGTATGC2350.040.2121444
TCGTATG2350.040.2121443
CGGAAGA2400.039.3823131
GTATGCC2450.038.57082445
CGGTTCA2500.037.7994089
GAGACCG2450.037.65247327
CCGAGAC2450.037.65247325
CGAGACC2450.037.65247326
AATCTCG2600.037.21095739
AAGAGCG2550.037.0619774
GCGGTTC2550.037.0582438
GAGCGGT2600.036.3492476