FastQCFastQC Report
Mon 6 Jun 2016
ERR1379391.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379391.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1585079
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTAAT1300.036.3444535
AGCGTAA1350.034.99835634
CGAGCGT1450.032.58467532
CGGTTCA1500.031.498529
ACCGAGC1500.031.4985230
GAGCGTA1500.031.4985233
CTCGTAT1600.029.53172742
CCGAGCG1600.029.52986331
TCTCGTA1650.028.63682641
CGTAATC1650.028.63682636
CAACGCG406.168877E-428.1236825
GAGCGGT1750.027.0055476
CGTATGC1750.026.99873244
ATGCCGA1750.026.99873222
ATCTCGT1950.026.5388940
GCGGTTC1800.026.2487688
GACCGAG1800.026.24876829
CCGAGAC1900.024.86725425
TCGTATG2000.024.74883843
AAGAGCG1950.024.2365134