Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378944.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 795410 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGGCATCTCGTATGCC | 8260 | 1.0384581536566047 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 3901 | 0.49043889314944494 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 921 | 0.11578934134597252 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGCATGG | 1020 | 0.0 | 35.95533 | 32 |
| GACCGCA | 1020 | 0.0 | 35.95533 | 29 |
| CCGCATG | 1025 | 0.0 | 35.779934 | 31 |
| AGACCGC | 1035 | 0.0 | 35.434235 | 28 |
| TCTCGTA | 985 | 0.0 | 35.40555 | 41 |
| ATCTCGT | 980 | 0.0 | 35.3566 | 40 |
| GTATGCC | 990 | 0.0 | 35.22673 | 45 |
| CTCGTAT | 985 | 0.0 | 35.177128 | 42 |
| ACCGCAT | 1045 | 0.0 | 35.095154 | 30 |
| CATCTCG | 990 | 0.0 | 34.999462 | 39 |
| CGTATGC | 1015 | 0.0 | 34.58075 | 44 |
| TCGTATG | 1015 | 0.0 | 34.58075 | 43 |
| GAGACCG | 1060 | 0.0 | 34.386265 | 27 |
| AGATCGG | 515 | 0.0 | 33.203373 | 17 |
| CGAGACC | 1135 | 0.0 | 32.312275 | 26 |
| TGGCATC | 1120 | 0.0 | 31.338804 | 36 |
| TCGGAAG | 540 | 0.0 | 30.83286 | 20 |
| GCATGGC | 1200 | 0.0 | 30.749529 | 33 |
| GATCGGA | 550 | 0.0 | 30.681349 | 18 |
| GGCATCT | 1130 | 0.0 | 30.663246 | 37 |