Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379120.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 841186 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGAGTATCTCGTATGCC | 4794 | 0.5699096275972257 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGAGTATCTCGTATGCCGTC | 4050 | 0.4814630771315737 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AACGGTA | 20 | 7.0380204E-4 | 44.992455 | 40 |
| TATGCCG | 530 | 0.0 | 41.172337 | 43 |
| ATGCCGT | 630 | 0.0 | 34.99413 | 44 |
| TGCCGTC | 650 | 0.0 | 33.917385 | 45 |
| CGGAAGA | 765 | 0.0 | 25.615921 | 1 |
| TCGTATG | 945 | 0.0 | 23.32942 | 40 |
| CTCGTAT | 950 | 0.0 | 22.96983 | 39 |
| CGTATGC | 960 | 0.0 | 22.964897 | 41 |
| TCTCGTA | 970 | 0.0 | 22.728146 | 38 |
| GTATGCC | 965 | 0.0 | 22.612787 | 42 |
| AGACCGC | 1000 | 0.0 | 22.046303 | 25 |
| ATCTCGT | 1015 | 0.0 | 21.943438 | 37 |
| TATCTCG | 990 | 0.0 | 21.58857 | 36 |
| GACCGCA | 1030 | 0.0 | 21.404175 | 26 |
| CGCAGAG | 1030 | 0.0 | 21.404175 | 29 |
| CCGCAGA | 1055 | 0.0 | 21.1102 | 28 |
| GAGTATC | 1015 | 0.0 | 21.056833 | 33 |
| ACCGCAG | 1050 | 0.0 | 20.996477 | 27 |
| GAAGAGC | 995 | 0.0 | 20.596474 | 3 |
| CCGAGAC | 1105 | 0.0 | 20.15499 | 22 |