FastQCFastQC Report
Mon 6 Jun 2016
ERR1390670.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390670.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences829550
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCTTA458.7151057E-734.990231
AGATCGG751.7062121E-929.99340817
CGTATGC453.496361E-529.991644
ACCGCTT453.496361E-529.991630
GACCGCT554.1721814E-628.62834729
CGTGCCC406.172613E-428.1188211
CGCTTAA507.1696864E-526.99244332
GATCGGA856.491973E-926.46477318
TGTTACG450.001227838724.99450918
ATCTCGT551.3703556E-424.53858440
ATCGGAA952.118577E-823.67900719
TCTCGTA602.4713852E-422.49370241
TCGTATG602.4713852E-422.49370243
TCCCCCG500.002267768422.49370243
TCGGAAG1056.1207174E-821.42257320
CATCTCG754.6105866E-520.9941239
CTCGTAT654.244875E-420.76341642
AGACCGC654.244875E-420.76341628
CGTTGGA1507.1031536E-918.0308255
GAGCGAG901.8688846E-417.495136