FastQCFastQC Report
Mon 6 Jun 2016
ERR1378787.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378787.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1767228
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACCTATCTCGTATGCCGTC20750.1174155230677649Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3050.033.93239643
ATGCCGT3350.031.56527744
TGCCGTC3350.031.56527745
CTCGTAT4450.023.25703639
GACCGTA4450.023.25703626
TATCTCG4650.023.22441936
AGACCGT4550.022.74589225
TCTCGTA4600.022.49865538
CGTAACC4750.022.26182729
ACCGTAA4750.022.26182727
ATCTCGT4700.022.0199637
GATCGGA2050.021.9499126
AATGCCG6950.021.68935218
CGTATGC4800.021.56121341
CCGTAAC5050.020.93934428
TGCCGAG7150.020.76798820
ATGCCGA7300.020.6494519
TCGTATG5150.020.53275540
GAGACCG5050.020.49382624
ATCGGAA2250.019.99880627