FastQCFastQC Report
Mon 6 Jun 2016
ERR1378815.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378815.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1987426
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTCTAATCTCGTATGCCGTC20180.10153837174314917Illumina Paired End PCR Primer 2 (96% over 32bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2500.037.79691343
TGCCGTC2900.031.80774745
ATGCCGT3300.027.95226344
GACCGGT3800.024.8663926
ACCGGTT3850.024.54345127
CCGGTTC3900.024.2287928
CGTATGC3950.023.92209641
TCTCGTA3950.023.92209638
CTCGTAT4000.023.62307239
AGACCGG4000.023.62307225
TCGTATG4200.022.49816340
CGGTTCT4250.022.23347929
GAGACCG4450.021.2342224
ATCTCGT4700.020.1047437
ATGCCGA7650.019.70427319
GCGGTTC7850.019.2124045
AATGCCG7900.019.0807218
CGGTTCA8000.018.8516986
TGCCGAG8100.018.60959220
GAGCGGT8150.018.5061323