Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379119.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1039609 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAGAATCTCGTATGCC | 3357 | 0.32290986322742493 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAGAATCTCGTATGCCGTC | 2916 | 0.28049006886242805 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 350 | 0.0 | 37.278976 | 43 |
| TGCCGTC | 425 | 0.0 | 31.229654 | 45 |
| ATGCCGT | 420 | 0.0 | 31.065815 | 44 |
| CGGAAGA | 570 | 0.0 | 26.485903 | 1 |
| CGTATGC | 665 | 0.0 | 21.650225 | 44 |
| CTCGTAT | 670 | 0.0 | 21.488655 | 42 |
| TCGTATG | 670 | 0.0 | 21.488655 | 43 |
| TCTCGTA | 665 | 0.0 | 21.31194 | 41 |
| GAAGAGC | 805 | 0.0 | 20.702394 | 3 |
| AGACCGT | 730 | 0.0 | 20.646955 | 28 |
| GTATGCC | 700 | 0.0 | 20.56771 | 45 |
| CCGTGCA | 745 | 0.0 | 20.232218 | 31 |
| GACCGTG | 750 | 0.0 | 20.096369 | 29 |
| CCGAGAC | 770 | 0.0 | 19.86654 | 25 |
| ACCGTGC | 770 | 0.0 | 19.574387 | 30 |
| AATCTCG | 770 | 0.0 | 18.990076 | 39 |
| ATCTCGT | 750 | 0.0 | 18.896585 | 40 |
| CGTGCAG | 815 | 0.0 | 18.770517 | 32 |
| GAGCGGT | 885 | 0.0 | 18.322046 | 3 |
| GAGACCG | 835 | 0.0 | 18.320044 | 27 |