Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379103.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 639314 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGCAGATCTCGTATGCC | 3592 | 0.5618522353647817 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGCAGATCTCGTATGCCGTC | 3147 | 0.492246376584902 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 664 | 0.10386132635919125 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 380 | 0.0 | 37.892895 | 43 |
| ATGCCGT | 435 | 0.0 | 33.101837 | 44 |
| TGCCGTC | 475 | 0.0 | 30.787973 | 45 |
| CGGAAGA | 645 | 0.0 | 26.204567 | 1 |
| CGTAGCA | 745 | 0.0 | 22.047632 | 32 |
| GACCGTA | 750 | 0.0 | 21.898935 | 29 |
| CCGTAGC | 760 | 0.0 | 21.612482 | 31 |
| ATCTCGT | 765 | 0.0 | 21.469543 | 40 |
| TCTCGTA | 765 | 0.0 | 21.469543 | 41 |
| GAAGAGC | 810 | 0.0 | 21.40962 | 3 |
| CTCGTAT | 760 | 0.0 | 21.314753 | 42 |
| CGTATGC | 770 | 0.0 | 21.037935 | 44 |
| TCGTATG | 785 | 0.0 | 20.922548 | 43 |
| ACCGTAG | 775 | 0.0 | 20.902208 | 30 |
| AGACCGT | 775 | 0.0 | 20.900574 | 28 |
| GTATGCC | 790 | 0.0 | 20.790127 | 45 |
| GAGACCG | 820 | 0.0 | 20.299126 | 27 |
| CCGAGAC | 850 | 0.0 | 19.582685 | 25 |
| GGAAGAG | 900 | 0.0 | 19.531137 | 2 |
| AGATCTC | 895 | 0.0 | 19.35357 | 38 |