Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378797.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 953228 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCAATTATCTCGTATGCC | 970 | 0.10175949510505355 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCAATTATCTCGTATGCCGTC | 961 | 0.10081533484119225 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 150 | 0.0 | 35.99853 | 43 |
| CCGCGAT | 25 | 0.0021073502 | 35.99853 | 36 |
| ATGCCGT | 165 | 0.0 | 32.72594 | 44 |
| TGCCGTC | 200 | 0.0 | 26.9989 | 45 |
| CGGAAGC | 75 | 4.6030204E-5 | 20.999144 | 25 |
| CTCGTAT | 260 | 0.0 | 20.768383 | 39 |
| GACCGCC | 265 | 0.0 | 20.376528 | 26 |
| TCTCGTA | 265 | 0.0 | 20.376528 | 38 |
| CGCCAAT | 270 | 0.0 | 19.999186 | 29 |
| CGTATGC | 275 | 0.0 | 19.635563 | 41 |
| ACCGCCA | 275 | 0.0 | 19.635563 | 27 |
| TCGTATG | 275 | 0.0 | 19.635563 | 40 |
| GCGGTTC | 450 | 0.0 | 19.00421 | 5 |
| TATCTCG | 285 | 0.0 | 18.946594 | 36 |
| AGACCGC | 285 | 0.0 | 18.946594 | 25 |
| GAGCGGT | 460 | 0.0 | 18.591074 | 3 |
| ATGCCGA | 425 | 0.0 | 18.528656 | 19 |
| CCGCCAA | 295 | 0.0 | 18.304338 | 28 |
| AGAGCGG | 455 | 0.0 | 18.300756 | 2 |
| CGGTTCA | 480 | 0.0 | 18.28434 | 6 |