FastQCFastQC Report
Mon 6 Jun 2016
ERR1378849.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378849.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences592948
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT25640.4324156587086895Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCAACTATCTCGTATGCC20710.3492717742533915Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCAACTATCTCGTATGCCGTC19830.33443067520254727Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGT3400.036.38696744
ACCCGGT250.002108283835.9930523
TATGCCG3500.035.34733643
ATCGGAA3400.033.74064327
TGCCGTC3800.033.14869745
GATCGGA3600.031.86615826
AGATCGG3650.031.43228725
CCGAGAT3950.029.61453622
TCGGAAG3950.029.6120428
AATGCCG9500.025.8086318
CGAGATC4550.025.7093223
GAGATCG4600.025.42987324
TGCCGAG9750.025.1489920
GCCGAGA9850.024.89367121
GAATGCC9950.024.64140517
ATGCCGA10050.024.39827519
TCTCGTA5300.024.19344138
GGAATGC10150.024.1558616
CTCGTAT5300.023.76899539
TATCTCG5350.023.54685436