FastQCFastQC Report
Mon 6 Jun 2016
ERR1378674.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378674.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1006797
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCAGTATCTCGTATGCC12960.12872505579575624Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGGTT1850.038.91487
CTCGTAT1800.038.74781842
GACCGTT2050.037.31497229
AGACCGT2000.037.1229128
CCGTTCA2000.037.1229131
TCGTATG1950.036.92099843
CGTATGC2050.036.21747244
GCGGTTC2000.035.9961858
CGGTTCA2150.035.5776259
ACCGTTC2150.034.5329430
ATGCCGA2150.034.53122322
TCTCGTA2050.034.02247241
CGTTCAG2250.033.9980932
AATGCCG2250.032.99650221
AGAGCGG2200.032.741695
AAGAGCG2300.032.2968334
GAGACCG2300.032.28079227
GAGCGGT2250.032.01416
TATCTCG2200.031.7027639
CGGAAGA2350.031.6206651