FastQCFastQC Report
Mon 6 Jun 2016
ERR1378798.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378798.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences812045
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCACATTATCTCGTATGCC10850.13361328497804922Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCACATTATCTCGTATGCCGTC10560.13004205431964977Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGCGC403.4575896E-739.373499
TATGCCG1450.032.58495743
ATGCCGT1550.030.48270244
ACGCCAT300.005147343529.99885218
CCGCGCC554.1641997E-628.63526510
TGCCGTC1650.028.63526545
CGCGCCC406.165954E-428.12392211
CACCGCG507.157723E-526.9989648
GCGAGAC602.4672836E-422.4991438
GCCACCG1056.092887E-821.431716
CGAGACT955.529637E-721.31497239
AAAGCGC654.2308116E-420.773555
AGCGAGA654.2378518E-420.76843537
TCGGAAG1201.1044904E-820.6242128
CCGCACA2400.020.6242131
CGGAAGA2550.020.3020921
CGTATGC2550.020.2933444
CTCGTAT2550.020.2933442
AGACCGC2450.020.20330828
CCGAGAC2600.019.90308425