Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378848.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1112835 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2776 | 0.24945297371128694 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTTATATCTCGTATGCCGTC | 2054 | 0.1845736340068384 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTTATATCTCGTATGCC | 1631 | 0.14656260811351188 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 285 | 0.0 | 34.73452 | 43 |
| GATCGGA | 425 | 0.0 | 34.404823 | 26 |
| AGATCGG | 445 | 0.0 | 32.860016 | 25 |
| ATGCCGT | 290 | 0.0 | 31.808216 | 44 |
| TGCCGTC | 285 | 0.0 | 31.576836 | 45 |
| ATCGGAA | 480 | 0.0 | 30.462603 | 27 |
| TCGGAAG | 500 | 0.0 | 29.69401 | 28 |
| TGCCGAG | 890 | 0.0 | 27.29909 | 20 |
| ATGCCGA | 910 | 0.0 | 26.699112 | 19 |
| AATGCCG | 915 | 0.0 | 26.552023 | 18 |
| CCGAGAT | 625 | 0.0 | 23.756275 | 22 |
| GCCGAGA | 1015 | 0.0 | 23.715494 | 21 |
| CGCGTTA | 400 | 0.0 | 23.057848 | 29 |
| GCGTTAT | 410 | 0.0 | 23.04413 | 30 |
| CGAGATC | 645 | 0.0 | 23.019646 | 23 |
| CGGAAGA | 645 | 0.0 | 23.018612 | 29 |
| GAGATCG | 645 | 0.0 | 22.670864 | 24 |
| GAATGCC | 1095 | 0.0 | 22.59818 | 17 |
| CTCGTAT | 410 | 0.0 | 22.498495 | 39 |
| CCGCGTT | 410 | 0.0 | 22.49546 | 28 |