Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378817.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 800796 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACGTTATCTCGTATGCCGTC | 1234 | 0.1540966738095595 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACGTTATCTCGTATGCC | 1131 | 0.14123447170065784 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 185 | 0.0 | 36.484917 | 43 |
| ATGCCGT | 215 | 0.0 | 31.393997 | 44 |
| TGCCGTC | 215 | 0.0 | 31.393997 | 45 |
| CCGTACG | 265 | 0.0 | 25.470602 | 28 |
| CGTACGT | 270 | 0.0 | 24.998924 | 29 |
| ACCGTAC | 270 | 0.0 | 24.998924 | 27 |
| GACCGTA | 275 | 0.0 | 24.5444 | 26 |
| CTCGTAT | 285 | 0.0 | 24.472631 | 39 |
| TCTCGTA | 280 | 0.0 | 24.106106 | 38 |
| TACGTTA | 280 | 0.0 | 24.106106 | 31 |
| TCGTATG | 285 | 0.0 | 23.683191 | 40 |
| GTACGTT | 285 | 0.0 | 23.683191 | 30 |
| AGACCGT | 295 | 0.0 | 22.880373 | 25 |
| CGTTATC | 290 | 0.0 | 22.499033 | 33 |
| CGTATGC | 305 | 0.0 | 22.130196 | 41 |
| TATCTCG | 295 | 0.0 | 22.117693 | 36 |
| ATCTCGT | 300 | 0.0 | 21.749063 | 37 |
| GAGACCG | 300 | 0.0 | 21.749063 | 24 |
| CGGAAGA | 230 | 0.0 | 21.528877 | 1 |
| GATCGGA | 95 | 5.5296914E-7 | 21.31487 | 26 |