FastQCFastQC Report
Mon 6 Jun 2016
ERR1379291.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379291.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376949
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA207.0273486E-444.99986641
TCGCACC300.005142994729.999915
CTCGTAT300.005142994729.9999142
GAGGGTA600.00650267818.7499459
ATCGCTT600.00650267818.74994514
ACCACAC1507.219569E-917.9999499
CGCCACC750.001108364117.9999495
GAGGATC800.001707999916.8749510
GCTAATT2505.456968E-1215.29995519
GCCACCA2855.2750693E-1113.4210146
CCACACC1902.0509196E-613.02627710
AGCTAAT1403.5965384E-412.85710418
GGCTAAT1701.3730848E-411.9117318
GAGGTTG1600.0011049111.24996735
TGCCACC1650.001428848110.9090595
CTAATTT3959.640644E-1110.82275320
CACCACA2503.667723E-610.7999688
GGAGGAT1700.001832551810.5882049
ACCATGC1500.00875891310.49996959
GTTGCAG1500.00875891310.499969538