Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378885.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 935632 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3020 | 0.32277647622142036 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGGAACATCTCGTATGCC | 1796 | 0.19195581168664602 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGGAACATCTCGTATGCCGTC | 1715 | 0.18329856182772714 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTATCGT | 25 | 0.0020956444 | 36.03934 | 1 |
| TATGCCG | 270 | 0.0 | 34.167435 | 43 |
| ATGCCGT | 310 | 0.0 | 29.758736 | 44 |
| AGATCGG | 390 | 0.0 | 28.84064 | 25 |
| TCGGAAG | 410 | 0.0 | 28.532654 | 28 |
| GATCGGA | 390 | 0.0 | 28.263826 | 26 |
| ATCGGAA | 405 | 0.0 | 27.217018 | 27 |
| TGCCGTC | 340 | 0.0 | 27.132967 | 45 |
| AATGCCG | 855 | 0.0 | 24.469006 | 18 |
| TGCCGAG | 865 | 0.0 | 24.446192 | 20 |
| CCGAGAT | 475 | 0.0 | 24.153276 | 22 |
| ATGCCGA | 885 | 0.0 | 23.639547 | 19 |
| CTCGTAT | 405 | 0.0 | 22.778294 | 39 |
| CGTATGC | 415 | 0.0 | 22.229416 | 41 |
| CGAGATC | 520 | 0.0 | 22.06309 | 23 |
| GCCGAGA | 930 | 0.0 | 22.011919 | 21 |
| TCTCGTA | 425 | 0.0 | 21.70173 | 38 |
| GAATGCC | 975 | 0.0 | 21.68816 | 17 |
| CGTGGAA | 440 | 0.0 | 21.474314 | 29 |
| TCGTATG | 430 | 0.0 | 21.453972 | 40 |