FastQCFastQC Report
Mon 6 Jun 2016
ERR1378700.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378700.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences870690
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC659.094947E-1238.07687444
TCTCGTA702.1827873E-1135.35709841
TCGTATG855.456968E-1231.76466643
GCGGTTC855.456968E-1231.762848
CGGTTCA801.0004442E-1030.9356849
GCTCGGA300.005140835430.0068533
ACCGGAC852.0372681E-1029.11593830
AGACCGG852.0372681E-1029.11593828
CGGACAA903.947207E-1027.49996632
CTCGTAT903.947207E-1027.49996642
ATGCCGA1058.54925E-1125.71277622
AAGAGCG1001.3405952E-924.7542344
ATCTCGT1052.3646862E-923.57139840
CCGGACA1052.3646862E-923.57139831
GACCGGA1052.3665052E-923.57004529
GAGACCG1252.910383E-1123.39862827
CATCTCG1104.0490704E-922.49997139
TGCCGAG1104.0527084E-922.4986823
AGCGGTT1204.5110937E-1022.4986787
GAGCGGT1156.7502697E-921.5254216