FastQCFastQC Report
Mon 6 Jun 2016
ERR1379079.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379079.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences586590
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGAA700.038.56923732
AGACCGC700.038.56923728
CTCGTAT751.8189894E-1235.99795542
GACCGCG751.8189894E-1235.99795529
CCGCGGA751.8189894E-1235.99795531
GACCGTT250.00210685735.9979511
GCGGAAT803.6379788E-1233.7480833
GAGACCG855.456968E-1231.76290127
TCGTATG855.456968E-1231.76290143
CGTATGC901.2732926E-1129.99829744
ACCGCGG901.2732926E-1129.99829730
TATCTCG901.2732926E-1129.99829739
GCGACAG300.00514665829.99829530
GCGATTT300.00514665829.99829540
CGGAATA952.3646862E-1128.41943634
ATCTCGT952.3646862E-1128.41943640
GCGGTTC1053.6379788E-1227.855568
AGCGGTT1053.6379788E-1227.855567
GAGCGGT1105.456968E-1226.5984696
TCTCGTA1105.456968E-1226.589441