Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379114.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 791484 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCC | 3559 | 0.44966164824557414 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCCGTC | 3513 | 0.4438497809178707 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 400 | 0.0 | 37.682526 | 43 |
| ATGCCGT | 440 | 0.0 | 34.25684 | 44 |
| TGCCGTC | 510 | 0.0 | 29.554922 | 45 |
| CGGAAGA | 750 | 0.0 | 25.8276 | 1 |
| TAGACGA | 805 | 0.0 | 23.195696 | 34 |
| GACCGTA | 810 | 0.0 | 23.052511 | 29 |
| CCGTAGA | 810 | 0.0 | 23.052511 | 31 |
| CGTAGAC | 815 | 0.0 | 22.911087 | 32 |
| CGTATGC | 820 | 0.0 | 22.771383 | 44 |
| TCGTATG | 820 | 0.0 | 22.771383 | 43 |
| CTCGTAT | 825 | 0.0 | 22.633375 | 42 |
| TCTCGTA | 830 | 0.0 | 22.497032 | 41 |
| ACCGTAG | 830 | 0.0 | 22.497032 | 30 |
| CTACGAC | 50 | 0.0022665607 | 22.49561 | 17 |
| GTATGCC | 835 | 0.0 | 22.362318 | 45 |
| GTAGACG | 845 | 0.0 | 22.097675 | 33 |
| ATCTCGT | 860 | 0.0 | 21.71225 | 40 |
| AGACGAT | 860 | 0.0 | 21.71225 | 35 |
| GAAGAGC | 910 | 0.0 | 21.529911 | 3 |
| AGACCGT | 885 | 0.0 | 21.353113 | 28 |