FastQCFastQC Report
Mon 6 Jun 2016
ERR1379197.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379197.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525895
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTATGATCTCGTATGCC11000.2091672291997452Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTC1650.043.6359068
CGCTTAT1700.042.35249732
AGCGGTT1750.041.1424267
GAGCGGT1750.041.1424266
AGAGCGG1800.040.0033845
TCTCGTA1800.039.9995841
ATCTCGT1900.039.07853740
AAGAGCG1850.038.9222074
CTCGTAT1850.038.9185142
CCGCTTA1850.038.9185131
CGTATGC1900.037.89433744
AATGCCG1900.037.89433721
TCGTATG1900.037.89433743
AGACCGC1950.036.92268828
CCGAGAC1950.036.92268825
ACCGCTT2000.035.99962230
GACCGCT2000.035.99962229
ATGCCGA2000.035.99962222
TGCCGAG2000.035.99962223
CGGAAGA2100.035.3601341