Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379179.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 320138 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTCAATCTCGTATGCC | 972 | 0.30361906427852986 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 110 | 0.0 | 40.908806 | 42 |
| AGAGCGG | 125 | 0.0 | 39.599728 | 5 |
| GCGGTTC | 120 | 0.0 | 39.374725 | 8 |
| CGGTTCA | 120 | 0.0 | 39.374725 | 9 |
| ATCTCGT | 115 | 0.0 | 39.130165 | 40 |
| GACCGTG | 115 | 0.0 | 39.130165 | 29 |
| GAGACCG | 115 | 0.0 | 39.130165 | 27 |
| TCTCGTA | 115 | 0.0 | 39.130165 | 41 |
| AGACCGT | 115 | 0.0 | 39.130165 | 28 |
| GAGCGGT | 130 | 0.0 | 38.076656 | 6 |
| AATCTCG | 125 | 0.0 | 37.79974 | 39 |
| CGTATGC | 120 | 0.0 | 37.499737 | 44 |
| CCGAGAC | 125 | 0.0 | 35.999752 | 25 |
| ACCGTGT | 125 | 0.0 | 35.999752 | 30 |
| CGGAAGA | 140 | 0.0 | 35.36242 | 1 |
| AGCGGTT | 135 | 0.0 | 34.99976 | 7 |
| TCGTATG | 135 | 0.0 | 33.333103 | 43 |
| CGTGTTC | 135 | 0.0 | 33.333103 | 32 |
| CGAGACC | 135 | 0.0 | 33.333103 | 26 |
| AAGAGCG | 150 | 0.0 | 32.99977 | 4 |