FastQCFastQC Report
Mon 6 Jun 2016
ERR1379103.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379103.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences639314
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGCAGATCTCGTATGCC35920.5618522353647817Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGCAGATCTCGTATGCCGTC31470.492246376584902Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT6640.10386132635919125Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3800.037.89289543
ATGCCGT4350.033.10183744
TGCCGTC4750.030.78797345
CGGAAGA6450.026.2045671
CGTAGCA7450.022.04763232
GACCGTA7500.021.89893529
CCGTAGC7600.021.61248231
ATCTCGT7650.021.46954340
TCTCGTA7650.021.46954341
GAAGAGC8100.021.409623
CTCGTAT7600.021.31475342
CGTATGC7700.021.03793544
TCGTATG7850.020.92254843
ACCGTAG7750.020.90220830
AGACCGT7750.020.90057428
GTATGCC7900.020.79012745
GAGACCG8200.020.29912627
CCGAGAC8500.019.58268525
GGAAGAG9000.019.5311372
AGATCTC8950.019.3535738