FastQCFastQC Report
Mon 6 Jun 2016
ERR1378858.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378858.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences994622
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT29810.29971185033108055Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATTGCATCTCGTATGCCGTC19920.20027709019104745Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATTGCATCTCGTATGCC17190.17282947692691292Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA5050.032.96307827
GATCGGA5150.032.75981526
TCGGAAG5500.031.08878928
AGATCGG5550.030.80406425
TATGCCG2250.029.99795543
CCGAGAT6500.026.30193122
ATGCCGT2500.026.0982244
ATGCCGA9750.024.68690119
TGCCGTC2700.024.16501845
AATGCCG9800.024.10186618
TCGTATG3650.024.03945743
CGAGATC7150.023.91084723
TGCCGAG10000.023.84477820
CGTATGC3950.023.35283944
GAGATCG7350.022.95415924
GACCGTA3950.022.78440529
CTCGTAT4000.022.49846642
ACCGTAT4050.022.22182530
GAATGCC10900.021.87594217
CGTATTG4150.021.6885432