Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378935.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 705411 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTATATCTCGTATGCC | 11702 | 1.658891057837204 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 6236 | 0.8840236401190228 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1490 | 0.21122437841201797 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| GGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTATATCTCGTATGCCG | 758 | 0.1074550864673219 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 1475 | 0.0 | 37.222218 | 42 |
| TATCTCG | 1470 | 0.0 | 37.195755 | 39 |
| CGATCTA | 1505 | 0.0 | 36.926155 | 32 |
| ATCTCGT | 1485 | 0.0 | 36.820038 | 40 |
| TCTCGTA | 1485 | 0.0 | 36.820038 | 41 |
| CCGATCT | 1515 | 0.0 | 36.682415 | 31 |
| CGTATGC | 1510 | 0.0 | 36.505875 | 44 |
| TCGTATG | 1525 | 0.0 | 36.1468 | 43 |
| GTATGCC | 1540 | 0.0 | 35.64862 | 45 |
| ACCGATC | 1560 | 0.0 | 35.62427 | 30 |
| GACCGAT | 1565 | 0.0 | 35.510456 | 29 |
| AGACCGA | 1600 | 0.0 | 34.874287 | 28 |
| CTATATC | 1585 | 0.0 | 34.780933 | 36 |
| GAGACCG | 1620 | 0.0 | 34.582626 | 27 |
| TGCCGTC | 105 | 0.0 | 34.285015 | 45 |
| GATCTAT | 1635 | 0.0 | 34.127743 | 33 |
| CGAGACC | 1715 | 0.0 | 32.798164 | 26 |
| ATATCTC | 1675 | 0.0 | 32.77777 | 38 |
| TATATCT | 1705 | 0.0 | 32.069065 | 37 |
| TCTATAT | 1775 | 0.0 | 31.435974 | 35 |