Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390712.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 568810 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 730 | 0.12833810938626256 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GATCGGA | 105 | 0.0 | 32.13344 | 18 |
| CGGGAAA | 30 | 0.0051524765 | 29.99121 | 45 |
| AGATCGG | 120 | 0.0 | 28.11676 | 17 |
| TCGTATA | 50 | 7.166431E-5 | 26.992088 | 9 |
| TCGGAAG | 130 | 0.0 | 25.95393 | 20 |
| ATCGGAA | 130 | 0.0 | 25.95393 | 19 |
| TTCGTAT | 65 | 1.5254514E-5 | 24.22367 | 8 |
| CGGAAGA | 140 | 0.0 | 24.10008 | 21 |
| CCGAGAC | 140 | 0.0 | 24.10008 | 45 |
| CGGTTCA | 145 | 0.0 | 23.269041 | 29 |
| GAGCGGT | 145 | 0.0 | 23.269041 | 26 |
| CCGAGAT | 145 | 0.0 | 23.269041 | 14 |
| AGAGCGG | 145 | 0.0 | 23.269041 | 25 |
| AGCGGTT | 155 | 1.8189894E-12 | 21.767815 | 27 |
| CGAGATC | 155 | 1.8189894E-12 | 21.767815 | 15 |
| GCGGTTC | 160 | 1.8189894E-12 | 21.08757 | 28 |
| CTTCGTA | 75 | 4.6077785E-5 | 20.993847 | 7 |
| CGTATAA | 65 | 4.242988E-4 | 20.763145 | 10 |
| GAGATCG | 165 | 3.6379788E-12 | 20.448551 | 16 |
| AAGAGCG | 175 | 7.2759576E-12 | 19.280064 | 24 |