FastQCFastQC Report
Mon 6 Jun 2016
ERR1379119.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379119.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1039609
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAGAATCTCGTATGCC33570.32290986322742493Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAGAATCTCGTATGCCGTC29160.28049006886242805Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3500.037.27897643
TGCCGTC4250.031.22965445
ATGCCGT4200.031.06581544
CGGAAGA5700.026.4859031
CGTATGC6650.021.65022544
CTCGTAT6700.021.48865542
TCGTATG6700.021.48865543
TCTCGTA6650.021.3119441
GAAGAGC8050.020.7023943
AGACCGT7300.020.64695528
GTATGCC7000.020.5677145
CCGTGCA7450.020.23221831
GACCGTG7500.020.09636929
CCGAGAC7700.019.8665425
ACCGTGC7700.019.57438730
AATCTCG7700.018.99007639
ATCTCGT7500.018.89658540
CGTGCAG8150.018.77051732
GAGCGGT8850.018.3220463
GAGACCG8350.018.32004427