FastQCFastQC Report
Mon 6 Jun 2016
ERR1379259.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379259.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences624759
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC301.1393254E-437.50000444
CTCGTAT301.1393254E-437.50000442
TCTCGTA352.8189138E-432.14285741
ATCTCGT453.4883204E-530.040
TATCTCG453.4883204E-530.039
GAGACCG450.001225928125.027
GCGGTTC500.002263462222.58
CGGTTCA500.002263462222.59
AGACCGG500.002263462222.528
TCGTATG500.002263462222.543
CACGCCC754.5983143E-521.00000211
CCGAGAC550.00393455720.45454625
ATGCCGA550.00393455720.45454622
GCCCGGC1251.7635102E-819.814
CGCCCGG807.555944E-519.687513
ACCACGC1302.7661372E-819.038469
AGAGCGG600.00650724718.7500025
CGGAAGA750.001109452218.0000021
AAGAGCG750.001109452218.0000024
CGGGAGT750.001109452218.00000232