Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379105.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1153053 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCCGTC | 3325 | 0.288364888691153 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCC | 3234 | 0.28047279700065825 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 380 | 0.0 | 36.704052 | 43 |
| ATGCCGT | 420 | 0.0 | 33.208427 | 44 |
| TGCCGTC | 445 | 0.0 | 31.848316 | 45 |
| CGTATGC | 590 | 0.0 | 24.021187 | 41 |
| TCGTATG | 590 | 0.0 | 23.639898 | 40 |
| GTATGCC | 615 | 0.0 | 23.044716 | 42 |
| CTCGTAT | 610 | 0.0 | 22.86482 | 39 |
| TCTCGTA | 615 | 0.0 | 22.678926 | 38 |
| AGACCGC | 635 | 0.0 | 22.319864 | 25 |
| GACCGCA | 660 | 0.0 | 21.473484 | 26 |
| ATCTCGT | 660 | 0.0 | 21.132635 | 37 |
| ACCGCAT | 660 | 0.0 | 21.132635 | 27 |
| CCGCATG | 680 | 0.0 | 20.842815 | 28 |
| GAGACCG | 695 | 0.0 | 20.069273 | 24 |
| CGCATGA | 730 | 0.0 | 19.107046 | 29 |
| CGGAAGA | 675 | 0.0 | 19.027178 | 1 |
| AATGCCG | 870 | 0.0 | 18.617407 | 18 |
| CCGAGAC | 745 | 0.0 | 18.420368 | 22 |
| AGCGGTT | 950 | 0.0 | 18.015574 | 4 |
| CGGTTCA | 945 | 0.0 | 17.871819 | 6 |