FastQCFastQC Report
Mon 6 Jun 2016
ERR1390680.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390680.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences264798
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGCCA206.992545E-445.040273
ACCACGC403.4410368E-739.3804559
CACCACG356.224158E-638.576778
GGTGGCG507.131223E-527.003748
TTCGTTG450.001217691625.0223753
CTCCGCC551.366539E-424.53958337
CCACGCC651.5163721E-524.23412910
CGTTGGA500.002243382622.5286545
CCTTCGT500.002248320522.5201361
GGCTAAT903.2687603E-722.49886918
CGCCTCC602.464544E-422.4946240
CTTCGTT550.003908349720.472852
TCGTTGG600.006464088318.766784
ACGCCCA600.00650655518.74551612
CCTCCCG600.00650655518.74551642
CGGAGGT600.00650655518.74551633
GCTAATT2001.8189894E-1217.99909219
CACGCCC952.8061154E-416.58124511
AGGTTGC1104.62534E-516.35972236
GTTGCAG1257.599054E-616.19612538