FastQCFastQC Report
Mon 6 Jun 2016
ERR1378764.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378764.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences672059
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAT504.8754373E-835.9986329
CTCGTAT501.9805866E-631.49880242
CCGATAC602.417255E-729.9988631
ACCGATA602.417255E-729.9988630
TCTCGTA554.1627864E-628.63527541
ATGCCGA554.1627864E-628.63527522
GCGGTTC654.866761E-727.6933168
AGACCGA654.869944E-727.69125628
CGATACA654.869944E-727.69125632
ATCTCGT709.300984E-725.7133140
AGAGCGG801.05053914E-725.3171865
CGGAAGA851.8864739E-723.8297161
AAGAGCG851.8878382E-723.8279424
GAGCGGT903.276873E-722.5041686
TCGTATG702.701629E-522.49914643
CGGTTCA802.972687E-622.4991449
CCGAGAC802.972687E-622.49914425
AGCGGTT855.025491E-621.1772427
GAGACCG754.600329E-520.999227
TGCCGAG754.600329E-520.999223