FastQCFastQC Report
Mon 6 Jun 2016
ERR1379271.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379271.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427314
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTTCGT406.1562867E-428.1277071
CTCGTAT406.1562867E-428.12770742
TCGTATG406.1562867E-428.12770743
CCGAGAC406.1605027E-428.12441425
CGGAAGA507.143374E-527.0025981
CGTATGC450.00122377125.00533144
CGTAAAG450.001225442324.9994832
ACCGTAA450.001225442324.9994830
TCTCGTA500.002261034422.50216541
AGCGGTT500.002262572822.4995337
TATCTCG500.002262572822.49953339
GCGGTTC550.00393302820.454128
CCGTAAA550.00393302820.4541231
AAGAGCG706.974624E-419.2853134
ATCTCGT600.006504739618.7496140
CGGTTCA600.006504739618.749619
AGAGCGG600.006504739618.749615
GTATGCC950.005361114614.21355745
ACCTCGT950.00536944714.2102340
CGAGACC950.00536944714.2102326