FastQCFastQC Report
Mon 6 Jun 2016
ERR1378617.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378617.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences704060
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA39460.5604635968525409No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA28250.40124421214101075No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATCGTC207.024207E-445.0093775
GACGTCA4550.042.52425422
GATGACG4550.042.52425419
TAAGCCG4600.042.0620313
GCCGATG4650.041.6097516
CGTCATA4750.041.2103324
CCGATGA4750.041.207417
ATGACGT4700.041.1670920
ACGTCAT4800.040.77816423
AGCCGAT4750.040.73375315
CGATGAC4750.040.73375318
TGACGTC4800.040.3094521
GCGGTCT4400.039.88617336
CGGTATT4400.039.88617324
ATTCGGT4400.039.88334321
TTCGGTA4400.039.88334322
TCGGTAT4400.039.88334323
CGGGGAA4450.039.43521515
TCCTCGG3800.039.0759911
TTCCTCG3800.039.0759910