Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379003.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 801403 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6908 | 0.8619882880398502 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAGCATCTCGTATGCCGTC | 3514 | 0.43848101392183453 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAGCATCTCGTATGCC | 1370 | 0.17095019609360085 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 963 | 0.1201642619256479 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 445 | 0.0 | 37.428703 | 43 |
| ATGCCGT | 475 | 0.0 | 35.538635 | 44 |
| TGCCGTC | 500 | 0.0 | 33.761703 | 45 |
| GATCGGA | 935 | 0.0 | 33.446182 | 26 |
| AGATCGG | 945 | 0.0 | 32.854183 | 25 |
| ATCGGAA | 970 | 0.0 | 32.471302 | 27 |
| TCGGAAG | 1010 | 0.0 | 32.076317 | 28 |
| CCGAGAT | 1020 | 0.0 | 30.659 | 22 |
| CGAGATC | 1030 | 0.0 | 30.361341 | 23 |
| GAGATCG | 1030 | 0.0 | 30.361341 | 24 |
| AATGCCG | 1680 | 0.0 | 28.658133 | 18 |
| ATGCCGA | 1695 | 0.0 | 28.53725 | 19 |
| TGCCGAG | 1695 | 0.0 | 28.40452 | 20 |
| CGTATGC | 600 | 0.0 | 27.381075 | 41 |
| CGGAAGA | 1195 | 0.0 | 27.298792 | 29 |
| GCCGAGA | 1735 | 0.0 | 27.230976 | 21 |
| AGACCGA | 605 | 0.0 | 27.146313 | 25 |
| TCTCGTA | 615 | 0.0 | 27.07411 | 38 |
| GAATGCC | 1815 | 0.0 | 27.02236 | 17 |
| CTCGTAT | 615 | 0.0 | 26.708244 | 39 |