FastQCFastQC Report
Mon 6 Jun 2016
ERR1379392.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379392.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1590062
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGGAT1350.038.33271430
CTCGTAT1450.037.2407842
TCTCGTA1500.035.99942441
GACCGGA1550.033.38656229
ATCTCGT1700.033.08770440
CGTATGC1700.033.08770444
CCGGATG1600.032.3432331
TCGTATG1850.029.1887243
CGGATGT1900.028.42059732
AGACCGG1850.027.97252528
GAGCGGT2100.026.787816
GCGGTTC2200.025.5677728
CGGTTCA2200.025.5677729
CCGAGAC2100.024.6424625
AGCGGTT2250.023.9996177
GAGACCG2250.022.99963227
AGAGCGG2450.022.0432345
AATGCCG2450.022.04046221
AAGAGCG2700.021.6690444
ATGCCGA2500.021.59965122