Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378827.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 776629 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAAGATCTCGTATGCCGTC | 1593 | 0.20511724388350164 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAAGATCTCGTATGCC | 1400 | 0.1802662532560592 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 180 | 0.0 | 33.74744 | 43 |
| ATGCCGT | 195 | 0.0 | 31.151485 | 44 |
| TGCCGTC | 210 | 0.0 | 29.997725 | 45 |
| AGATCGG | 160 | 1.8189894E-12 | 21.09215 | 25 |
| CGTATGC | 295 | 0.0 | 20.59166 | 41 |
| CTCGTAT | 295 | 0.0 | 20.59166 | 39 |
| CGCCCGC | 90 | 8.218911E-6 | 20.007502 | 1 |
| TCGTATG | 305 | 0.0 | 19.916521 | 40 |
| TCTCGTA | 310 | 0.0 | 19.595287 | 38 |
| ATCTCGT | 315 | 0.0 | 19.284252 | 37 |
| ACCGGCT | 315 | 0.0 | 19.284252 | 27 |
| AGACCGG | 320 | 0.0 | 18.982935 | 25 |
| CCGCCAC | 120 | 2.4825567E-7 | 18.75824 | 4 |
| TCGGAAG | 180 | 1.0913936E-11 | 18.748577 | 28 |
| ATCGGAA | 180 | 1.0913936E-11 | 18.748577 | 27 |
| GCGGTTC | 520 | 0.0 | 18.613947 | 5 |
| AGCGGTT | 520 | 0.0 | 18.613947 | 4 |
| GAGCGGT | 520 | 0.0 | 18.613947 | 3 |
| AATGCCG | 520 | 0.0 | 18.604359 | 18 |
| CCCGCCA | 135 | 4.2453394E-8 | 18.34139 | 3 |