Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379349.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 818092 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTATCAATCTCGTATGCC | 1670 | 0.20413352043535446 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGCTAT | 195 | 0.0 | 43.844845 | 31 |
| CTCGTAT | 205 | 0.0 | 41.708622 | 42 |
| ACCGCTA | 210 | 0.0 | 40.71307 | 30 |
| TCTCGTA | 210 | 0.0 | 40.71307 | 41 |
| GACCGCT | 215 | 0.0 | 39.766254 | 29 |
| CGTATGC | 220 | 0.0 | 38.86485 | 44 |
| TCGTATG | 230 | 0.0 | 38.153362 | 43 |
| CGCTATC | 225 | 0.0 | 37.998863 | 32 |
| AGACCGC | 240 | 0.0 | 35.623936 | 28 |
| ATCTCGT | 255 | 0.0 | 34.410736 | 40 |
| CCGAGAC | 255 | 0.0 | 34.410736 | 25 |
| AGCGGTT | 250 | 0.0 | 34.19898 | 7 |
| CGGAAGA | 255 | 0.0 | 33.538662 | 1 |
| GCGGTTC | 255 | 0.0 | 33.52841 | 8 |
| GAGACCG | 265 | 0.0 | 32.263184 | 27 |
| GAGCGGT | 265 | 0.0 | 32.263184 | 6 |
| CGGTTCA | 280 | 0.0 | 30.534803 | 9 |
| AATGCCG | 290 | 0.0 | 30.257719 | 21 |
| AGAGCGG | 285 | 0.0 | 30.004606 | 5 |
| AAGAGCG | 300 | 0.0 | 29.25449 | 4 |