Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378858.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 994622 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2981 | 0.29971185033108055 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATTGCATCTCGTATGCCGTC | 1992 | 0.20027709019104745 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATTGCATCTCGTATGCC | 1719 | 0.17282947692691292 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATCGGAA | 505 | 0.0 | 32.963078 | 27 |
| GATCGGA | 515 | 0.0 | 32.759815 | 26 |
| TCGGAAG | 550 | 0.0 | 31.088789 | 28 |
| AGATCGG | 555 | 0.0 | 30.804064 | 25 |
| TATGCCG | 225 | 0.0 | 29.997955 | 43 |
| CCGAGAT | 650 | 0.0 | 26.301931 | 22 |
| ATGCCGT | 250 | 0.0 | 26.09822 | 44 |
| ATGCCGA | 975 | 0.0 | 24.686901 | 19 |
| TGCCGTC | 270 | 0.0 | 24.165018 | 45 |
| AATGCCG | 980 | 0.0 | 24.101866 | 18 |
| TCGTATG | 365 | 0.0 | 24.039457 | 43 |
| CGAGATC | 715 | 0.0 | 23.910847 | 23 |
| TGCCGAG | 1000 | 0.0 | 23.844778 | 20 |
| CGTATGC | 395 | 0.0 | 23.352839 | 44 |
| GAGATCG | 735 | 0.0 | 22.954159 | 24 |
| GACCGTA | 395 | 0.0 | 22.784405 | 29 |
| CTCGTAT | 400 | 0.0 | 22.498466 | 42 |
| ACCGTAT | 405 | 0.0 | 22.221825 | 30 |
| GAATGCC | 1090 | 0.0 | 21.875942 | 17 |
| CGTATTG | 415 | 0.0 | 21.68854 | 32 |