FastQCFastQC Report
Mon 6 Jun 2016
ERR1378739.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378739.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences764959
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGTAG556.002665E-1140.90701331
CTCGTAT700.038.56946642
CGGTAGC659.094947E-1238.0774832
GACCGGT803.6379788E-1233.7504929
AGACCGG754.7293724E-1133.0004828
GCGGTTC901.2732926E-1129.9984768
ACCGGTA852.0372681E-1029.11806930
GAGCGGT952.3646862E-1128.4251846
GAGACCG952.3646862E-1128.42146527
CGTATGC952.3646862E-1128.41960744
TCTCGTA952.3646862E-1128.41960741
TCGTATG952.3646862E-1128.41960743
CGGTTCA1004.5474735E-1126.9986279
CCGAGAC957.403287E-1026.0530125
ATCTCGT1058.54925E-1125.71297840
AGCGGTT1058.54925E-1125.7129787
CGGAAGA1101.5097612E-1024.5506251
TGCCGAG1101.5097612E-1024.54420723
AGAGCGG1152.6375346E-1023.4816725
AAGAGCG1204.5110937E-1022.503274