FastQCFastQC Report
Mon 6 Jun 2016
ERR1379332.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379332.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences340743
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC403.449295E-739.374144
GACCGGA403.449295E-739.374129
ATCTCGT458.677598E-734.99920340
GAGACCG458.677598E-734.99920327
CGGAAAG501.9765666E-631.49927932
GCGGTTC501.9765666E-631.4992798
CCGGAAA501.9765666E-631.49927931
AATGCCG501.9765666E-631.49927921
AGACCGG501.9765666E-631.49927928
ATGCCGA501.9765666E-631.49927922
ACCGGAA554.154379E-628.63571230
CTCGTAT554.154379E-628.63571242
CGGTTCA554.154379E-628.6357129
TCTCGTA554.154379E-628.63571241
TCGTATG554.154379E-628.63571243
GAGCGGT608.170908E-626.2494016
AATCTCG608.170908E-626.24940139
AAGAGCG709.265332E-725.7174724
AGCGGTT651.51993445E-524.2302197
TGCCGAG651.51993445E-524.23021923