FastQCFastQC Report
Mon 6 Jun 2016
ERR1379270.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379270.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences838011
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTC606.4301275E-933.749248
TCTCGTA606.4301275E-933.7492441
CGTAAAC708.1308826E-1032.1421332
TAGACGG453.490265E-529.99932321
GACCGTA751.7025741E-929.99932329
CTCGTAT702.8849172E-828.9279242
CGGTTCA702.8849172E-828.927929
CTAGACG507.157222E-526.99939220
AGCGGTT755.6365025E-826.9993927
ACCGTAA856.4774213E-926.46999230
TCGTATG801.053304E-725.31193243
AGAGCGG851.890603E-723.8258365
ATGCCGA952.1142114E-823.68367822
ATCTTCG702.6998448E-522.5021785
CGTATGC1003.6399797E-822.50083544
AGACCGT1003.6421625E-822.49949328
CCGAGAC1156.7648216E-921.52125425
GAGACCG1056.1043465E-821.4280927
GAGCGGT955.5260716E-721.316586
CGGAAGA1109.959513E-820.4577471