Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378778.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 649978 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCATATATCTCGTATGCCGTC | 1327 | 0.20416075621021018 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCATATATCTCGTATGCC | 998 | 0.15354365840074588 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 150 | 0.0 | 35.997967 | 43 |
| TGCCGTC | 165 | 0.0 | 34.088985 | 45 |
| ATGCCGT | 170 | 0.0 | 31.762913 | 44 |
| GACCGCC | 225 | 0.0 | 24.99859 | 26 |
| CCGCCAT | 225 | 0.0 | 24.99859 | 28 |
| CGCCATA | 225 | 0.0 | 24.99859 | 29 |
| TCTCGTA | 220 | 0.0 | 24.544071 | 38 |
| ACCGCCA | 230 | 0.0 | 24.45514 | 27 |
| AGACCGC | 235 | 0.0 | 23.93482 | 25 |
| ATCTCGT | 235 | 0.0 | 22.977428 | 37 |
| CTCGTAT | 240 | 0.0 | 22.498732 | 39 |
| TATCTCG | 245 | 0.0 | 22.039574 | 36 |
| GAGACCG | 260 | 0.0 | 21.633396 | 24 |
| CGTATGC | 265 | 0.0 | 21.225216 | 41 |
| CGGGGTT | 85 | 5.005697E-6 | 21.186686 | 1 |
| GAGCGGT | 385 | 0.0 | 21.04587 | 3 |
| AAGAGCG | 390 | 0.0 | 20.77925 | 1 |
| AATGCCG | 380 | 0.0 | 20.722515 | 18 |
| AGAGCGG | 395 | 0.0 | 20.513062 | 2 |
| CGGTTCA | 395 | 0.0 | 20.511482 | 6 |