FastQCFastQC Report
Mon 6 Jun 2016
ERR1379107.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379107.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1176575
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCC18080.1536663621103627Illumina Paired End PCR Primer 2 (97% over 34bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCCGTC16210.13777277266642585Illumina Paired End PCR Primer 2 (96% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2000.030.3734543
ATGCCGT2600.023.36419344
CTCGTAT3300.021.8170742
CGGAAGA3750.021.0248431
TCGTATG3600.020.62394743
CGTATGC3550.020.28065744
TCTCGTA3550.020.28065741
TGCCGTC3150.019.2847345
ATCTCGT4200.018.21335840
ACCGAGT4000.017.99755130
AGACCGA4000.017.99755128
CGAGTGA4050.017.77838132
GTATGCC4500.016.49915945
CATCTCG4650.016.45077339
CCGAGTG4450.016.18032631
GAGACCG4450.016.176227
GACCGAG4600.016.13910929
CGGTTCA4900.015.1619556
CCGAGAC5000.014.8473525
GAGCGGT5200.014.7201726