FastQCFastQC Report
Mon 6 Jun 2016
ERR1378642.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378642.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences888996
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA29300.32958528497316075No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA22750.2559066632470787No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG453.8562575E-1044.99645643
CGGTATT3500.040.49680724
GGCGGTC3550.039.92643435
TTCGGTA3550.039.92643422
CGTCATA2850.039.47057724
ATTCGGT3600.039.371921
TCGGTAT3600.039.371923
AGGCGGT3600.038.7469534
GAATTCG3750.038.39697319
ACGTCAT2950.038.1325923
CTCGGGG3250.038.0739213
AGCCGAT2900.038.01424815
GCGGTCT3800.037.89175436
CGGGGAA3750.037.7970215
TAAGCCG2950.037.36993813
ATGACGT3050.036.8823420
CCGATGA3100.036.28746817
GACGTCA3100.036.28746822
GATGACG3100.036.28746819
CGATGAC3100.036.28746818