Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378598.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 672299 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2484 | 0.36947846122037964 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2057 | 0.3059650542392596 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 280 | 0.0 | 41.782055 | 13 |
| TGACGTC | 290 | 0.0 | 41.11709 | 21 |
| CCGATGA | 285 | 0.0 | 41.049034 | 17 |
| TCGGGGA | 265 | 0.0 | 40.751144 | 14 |
| TTCCTCG | 250 | 0.0 | 40.496452 | 10 |
| TTCGGTA | 270 | 0.0 | 39.9965 | 22 |
| TCGGTAT | 270 | 0.0 | 39.9965 | 23 |
| ATGACGT | 300 | 0.0 | 39.74652 | 20 |
| AGCCGAT | 295 | 0.0 | 39.657543 | 15 |
| AAGCCGA | 295 | 0.0 | 39.657543 | 14 |
| ATTCGGT | 275 | 0.0 | 39.269283 | 21 |
| GGCGGTC | 275 | 0.0 | 39.269283 | 35 |
| CGGTATT | 275 | 0.0 | 39.269283 | 24 |
| AGGCGGT | 285 | 0.0 | 38.68082 | 34 |
| AATTCGG | 285 | 0.0 | 38.68082 | 20 |
| ACGTCAT | 305 | 0.0 | 38.357292 | 23 |
| CGTCATA | 305 | 0.0 | 38.357292 | 24 |
| GACGTCA | 310 | 0.0 | 37.73863 | 22 |
| CTCGGGG | 270 | 0.0 | 37.496716 | 13 |
| CGGGGAA | 290 | 0.0 | 37.238117 | 15 |