Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378979.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1196677 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 7937 | 0.6632533256676614 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCCGTC | 4266 | 0.3564871723948902 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCC | 1721 | 0.14381491413305345 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 515 | 0.0 | 39.320133 | 43 |
| ATGCCGT | 535 | 0.0 | 37.85022 | 44 |
| ATCGGAA | 1110 | 0.0 | 36.484722 | 27 |
| TCGGAAG | 1155 | 0.0 | 36.03722 | 28 |
| GATCGGA | 1140 | 0.0 | 35.72196 | 26 |
| AGATCGG | 1195 | 0.0 | 34.26613 | 25 |
| TGCCGTC | 590 | 0.0 | 33.940456 | 45 |
| AATGCCG | 1910 | 0.0 | 32.9827 | 18 |
| CCGAGAT | 1265 | 0.0 | 32.90355 | 22 |
| ATGCCGA | 1940 | 0.0 | 32.58863 | 19 |
| TGCCGAG | 1960 | 0.0 | 32.256096 | 20 |
| CGAGATC | 1290 | 0.0 | 32.091473 | 23 |
| GAGATCG | 1330 | 0.0 | 30.957151 | 24 |
| GCCGAGA | 2005 | 0.0 | 30.85886 | 21 |
| CGGAAGA | 1365 | 0.0 | 30.493034 | 29 |
| CTCGTAT | 680 | 0.0 | 29.777975 | 39 |
| TCTCGTA | 680 | 0.0 | 29.777975 | 38 |
| CGTATGC | 690 | 0.0 | 29.34641 | 41 |
| GAATGCC | 2180 | 0.0 | 29.1041 | 17 |
| GAGACCG | 710 | 0.0 | 28.836637 | 24 |