FastQCFastQC Report
Mon 6 Jun 2016
ERR1379108.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379108.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences899397
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTGAGATCTCGTATGCC20160.22415018062101605Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTGAGATCTCGTATGCCGTC17920.19924460499645874Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3200.034.44878443
TGCCGTC3850.028.63275545
ATGCCGT3950.027.90787344
AGACCGT4600.024.4534425
CGTATGC4700.023.4544941
CTCGTAT4700.023.4544939
TCTCGTA4700.023.4544938
CCGTGTG5050.021.82893228
GACCGTG5100.021.61492326
CGGAAGA3450.021.545381
TCGTATG5150.021.40507140
ACCGTGT5250.020.99735327
GTATGCC5400.020.83070642
GAGCGGT6100.020.6703743
CGTGTGA5350.020.6048829
AGCGGTT6150.020.5023214
AATGCCG6050.020.45196718
ATCTCGT5400.020.41409337
CCGAGAC5400.020.41409322
AAGAGCG6350.020.2190361