Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378633.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 776160 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3253 | 0.41911461554318696 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2481 | 0.31965058750773034 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 360 | 0.0 | 43.12358 | 13 |
| GACGTCA | 380 | 0.0 | 41.446003 | 22 |
| GCCGATG | 380 | 0.0 | 41.446003 | 16 |
| CGATGAC | 390 | 0.0 | 40.96019 | 18 |
| CCGATGA | 385 | 0.0 | 40.907745 | 17 |
| TGACGTC | 395 | 0.0 | 39.872105 | 21 |
| ATGACGT | 395 | 0.0 | 39.872105 | 20 |
| CGTCATA | 395 | 0.0 | 39.872105 | 24 |
| CGGTATT | 360 | 0.0 | 39.373707 | 24 |
| GATGACG | 400 | 0.0 | 39.373703 | 19 |
| AGCCGAT | 395 | 0.0 | 39.3025 | 15 |
| AGGCGGT | 370 | 0.0 | 38.917637 | 34 |
| TTCGGTA | 365 | 0.0 | 38.83434 | 22 |
| ACGTCAT | 415 | 0.0 | 38.492706 | 23 |
| GAATTCG | 380 | 0.0 | 38.485577 | 19 |
| AATTCGG | 375 | 0.0 | 38.39874 | 20 |
| GCGGTCT | 385 | 0.0 | 37.985764 | 36 |
| CGGTCTC | 385 | 0.0 | 37.401367 | 37 |
| TCGGGGA | 380 | 0.0 | 37.301403 | 14 |
| CGGGGAA | 380 | 0.0 | 37.301403 | 15 |