Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379341.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 779936 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACATATCTCGTATGCC | 1620 | 0.20770935051081116 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 225 | 0.0 | 37.99962 | 44 |
| GACCGTC | 225 | 0.0 | 37.99962 | 29 |
| TCTCGTA | 225 | 0.0 | 37.99962 | 41 |
| TATCTCG | 230 | 0.0 | 37.173542 | 39 |
| TCGTATG | 235 | 0.0 | 36.382618 | 43 |
| CGTCACA | 240 | 0.0 | 35.624645 | 32 |
| ATCTCGT | 250 | 0.0 | 34.19966 | 40 |
| CTCGTAT | 250 | 0.0 | 34.19966 | 42 |
| AGACCGT | 250 | 0.0 | 34.19966 | 28 |
| ACCGTCA | 250 | 0.0 | 34.19966 | 30 |
| GTATGCC | 265 | 0.0 | 33.96193 | 45 |
| CGGTTCA | 260 | 0.0 | 32.88429 | 9 |
| AGCGGTT | 275 | 0.0 | 32.726948 | 7 |
| GCGGTTC | 280 | 0.0 | 32.14254 | 8 |
| GAGACCG | 275 | 0.0 | 31.090601 | 27 |
| TACGGGG | 30 | 0.005146507 | 29.9997 | 43 |
| GAGCGGT | 310 | 0.0 | 29.759676 | 6 |
| AAGAGCG | 310 | 0.0 | 29.03383 | 4 |
| AGAGCGG | 315 | 0.0 | 28.572973 | 5 |
| CCGTCAC | 300 | 0.0 | 28.499716 | 31 |