Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378610.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 569853 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2375 | 0.41677415052653927 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1753 | 0.30762319405179933 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCATA | 240 | 0.0 | 43.125504 | 24 |
| GCCGATG | 255 | 0.0 | 41.467434 | 16 |
| GACGTCA | 250 | 0.0 | 41.393215 | 22 |
| TTCGGTA | 225 | 0.0 | 40.993286 | 22 |
| TAAGCCG | 265 | 0.0 | 39.902626 | 13 |
| TCGGGGA | 240 | 0.0 | 39.372005 | 14 |
| TCGGTAT | 235 | 0.0 | 39.24889 | 23 |
| AGCCGAT | 270 | 0.0 | 39.16369 | 15 |
| GGCGGTC | 230 | 0.0 | 39.130894 | 35 |
| CCGATGA | 275 | 0.0 | 38.451622 | 17 |
| CGGTATT | 240 | 0.0 | 38.43795 | 24 |
| ATTCGGT | 240 | 0.0 | 38.431206 | 21 |
| AAGCCGA | 280 | 0.0 | 37.764988 | 14 |
| CGATGAC | 280 | 0.0 | 37.764988 | 18 |
| ATGACGT | 280 | 0.0 | 37.76167 | 20 |
| GCGGTCT | 245 | 0.0 | 37.653503 | 36 |
| CGGGGAA | 245 | 0.0 | 37.650196 | 15 |
| TGACGTC | 275 | 0.0 | 37.6302 | 21 |
| TTCCTCG | 235 | 0.0 | 37.334312 | 10 |
| ACGTCAT | 280 | 0.0 | 36.95823 | 23 |