FastQCFastQC Report
Mon 6 Jun 2016
ERR1379067.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379067.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences635991
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCAAGC301.1392312E-437.50065638
CGGCTAT250.00210703535.997817
CGCCTTA653.6743586E-1034.6159932
TCGTATG803.3905962E-928.12328143
GCGGTTC903.947207E-1027.4983188
AGAGCGG1004.5474735E-1127.0047195
CCGAGAC755.629954E-827.00047325
CGTATGC856.4737833E-926.4689744
ATCTCGT901.1896191E-824.9984740
GAGCGGT1101.5097612E-1024.5497446
GACCGCC851.8905666E-723.82394629
GAGACCG851.8905666E-723.82394627
ATGCCGA851.8920036E-723.82207322
AGCGGTT1252.910383E-1123.3985717
AGACCGC903.2816024E-722.50039128
TCTCGTA1003.6401616E-822.49862541
CCGCCTT903.2840944E-722.49862331
CGGAAGA1156.7357178E-921.5271931
CGGTTCA1156.7593646E-921.5204229
CTCGTAT1056.1010724E-821.42726142