FastQCFastQC Report
Mon 6 Jun 2016
ERR1379041.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379041.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1327117
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGTCAATCTCGTATGCC16520.12448035855165747Illumina Paired End PCR Primer 2 (97% over 38bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGCGAC207.035916E-444.9970979
GACCGAT1900.040.26056329
ACCGATG2000.038.2475330
GAGACCG2150.036.62554627
AGACCGA2100.036.42622428
CGTATGC2150.034.53265844
CGATGTC2350.033.50847632
TCTCGTA2250.032.9978741
CCGATGT2450.032.14078531
TCGTATG2400.030.93550743
GCGTCGG300.005149164729.99806815
CTCGTAT2500.029.69808842
GATCGGA1150.027.38953618
ATCTCGT2750.026.9982640
GTATGCC2800.026.5161545
ATCGGAA1300.025.95986419
CCGAGAC3200.024.60778825
TCGGAAG1400.024.1055920
GCGGTTC3200.023.905618
CGGTTCA3250.023.5369459