FastQCFastQC Report
Mon 6 Jun 2016
ERR1378936.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378936.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1374383
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGGCGATCTCGTATGCC132840.9665428050259643Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC73240.5328936693774589Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT16610.12085423058928989Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGCGAT17550.037.3072735
GGCGATC17550.037.0508636
CTCGTAT17500.036.90092542
ATCTCGT17550.036.79445640
TCTCGTA17600.036.56341641
CCGCAGG18100.036.54654731
CGCAGGC18250.036.36945332
GTATGCC17600.036.30772845
CAGGCGA18100.036.2979334
CGTATGC17700.036.2297244
GCAGGCG18550.035.78126533
TCGTATG18000.035.75089643
AGACCGC18550.035.65997328
GACCGCA18750.035.27960229
GAGACCG19000.034.81539527
GCGATCT18650.034.5036337
ACCGCAG19300.034.27422330
GATCTCG19450.033.20013839
CGAGACC20650.032.25145326
AGATCGG11100.031.62126417