Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379160.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 209690 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTCATATCTCGTATGCC | 1062 | 0.5064619199771091 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCGGTT | 155 | 0.0 | 43.548386 | 7 |
| AGAGCGG | 155 | 0.0 | 43.548386 | 5 |
| CGTATGC | 150 | 0.0 | 43.5 | 44 |
| CTCGTAT | 150 | 0.0 | 43.5 | 42 |
| CCGGTTC | 165 | 0.0 | 42.272728 | 31 |
| GAGCGGT | 160 | 0.0 | 42.1875 | 6 |
| ACCGGTT | 155 | 0.0 | 42.09677 | 30 |
| GACCGGT | 155 | 0.0 | 42.09677 | 29 |
| GAGACCG | 155 | 0.0 | 42.09677 | 27 |
| TCTCGTA | 155 | 0.0 | 42.09677 | 41 |
| CCGAGAC | 155 | 0.0 | 42.09677 | 25 |
| GCGGTTC | 165 | 0.0 | 40.90909 | 8 |
| ATCTCGT | 160 | 0.0 | 40.78125 | 40 |
| AATGCCG | 160 | 0.0 | 40.78125 | 21 |
| CGGAAGA | 170 | 0.0 | 39.705883 | 1 |
| AAGAGCG | 170 | 0.0 | 39.705883 | 4 |
| TATCTCG | 165 | 0.0 | 39.545452 | 39 |
| AGACCGG | 165 | 0.0 | 39.545452 | 28 |
| CGAGACC | 165 | 0.0 | 39.545452 | 26 |
| TCGTATG | 170 | 0.0 | 38.38235 | 43 |