Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378608.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 918426 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4095 | 0.4458715236720215 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2884 | 0.3140155004322613 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCAGATATCTCGTATGCCGTC | 1098 | 0.11955236458898158 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 430 | 0.0 | 42.379517 | 13 |
| CGTCATA | 430 | 0.0 | 41.85631 | 24 |
| ACGTCAT | 460 | 0.0 | 39.126553 | 23 |
| GACGTCA | 475 | 0.0 | 37.89098 | 22 |
| CGGTATT | 435 | 0.0 | 37.754875 | 24 |
| TCGGTAT | 440 | 0.0 | 37.325844 | 23 |
| TGACGTC | 485 | 0.0 | 37.109722 | 21 |
| ATTCGGT | 445 | 0.0 | 36.90645 | 21 |
| CCGATGA | 485 | 0.0 | 36.64585 | 17 |
| TCGGGGA | 455 | 0.0 | 36.58978 | 14 |
| TTCGGTA | 450 | 0.0 | 36.49638 | 22 |
| ATGACGT | 490 | 0.0 | 36.271908 | 20 |
| CGATGAC | 500 | 0.0 | 35.99643 | 18 |
| GCGGTCT | 465 | 0.0 | 35.802902 | 36 |
| AGCCGAT | 510 | 0.0 | 35.29062 | 15 |
| GATGACG | 520 | 0.0 | 35.0446 | 19 |
| GAATTCG | 470 | 0.0 | 34.94334 | 19 |
| CCTCGGG | 395 | 0.0 | 34.74339 | 12 |
| CTCGGGG | 395 | 0.0 | 34.74339 | 13 |
| AAGCCGA | 525 | 0.0 | 34.710842 | 14 |