Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379340.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 983816 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGTAATCTCGTATGCC | 1314 | 0.13356156029176186 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGATAG | 195 | 0.0 | 41.537617 | 31 |
| CGATAGT | 195 | 0.0 | 41.537617 | 32 |
| ACCGATA | 215 | 0.0 | 37.673653 | 30 |
| CTCGTAT | 220 | 0.0 | 36.817436 | 42 |
| TCTCGTA | 220 | 0.0 | 36.817436 | 41 |
| TCGTATG | 220 | 0.0 | 36.817436 | 43 |
| GACCGAT | 225 | 0.0 | 35.999268 | 29 |
| CGTATGC | 235 | 0.0 | 35.424812 | 44 |
| GAGCGGT | 240 | 0.0 | 34.69032 | 6 |
| CGGTTCA | 240 | 0.0 | 34.6868 | 9 |
| AGCGGTT | 240 | 0.0 | 34.6868 | 7 |
| GCGGTTC | 245 | 0.0 | 33.9789 | 8 |
| ATCTCGT | 250 | 0.0 | 32.39934 | 40 |
| AGAGCGG | 265 | 0.0 | 31.419245 | 5 |
| GAGACCG | 260 | 0.0 | 31.153212 | 27 |
| ATGCCGA | 270 | 0.0 | 30.832706 | 22 |
| AGACCGA | 270 | 0.0 | 29.999392 | 28 |
| AATGCCG | 295 | 0.0 | 28.982462 | 21 |
| GTATGCC | 280 | 0.0 | 28.927982 | 45 |
| CGGAAGA | 290 | 0.0 | 28.71215 | 1 |