FastQCFastQC Report
Mon 6 Jun 2016
ERR1378619.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378619.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences826164
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA29780.36046111909983974No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA23570.28529444517069247No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG2600.041.53689613
GCGGTCT3600.041.24844736
AATTCGG3600.041.24844720
TCGGTAT3600.041.24844723
AGGCGGT3650.040.68340334
GGCGGTC3650.040.68340335
ATTCGGT3700.040.1336221
TTCGGTA3700.040.1336222
CGGTATT3700.040.1336224
GAATTCG3700.040.1336219
CGTCATA2750.040.08939724
AGCCGAT2700.039.99849715
AAGCCGA2750.039.27124414
CGGGGAA3900.039.2292915
CCGATGA2800.038.56997717
CTCGGGG3100.038.46629713
TCGGGGA3950.038.1631214
ATGACGT2900.038.01581220
TATGCCG601.546141E-1037.49858543
TGACGTC2950.037.3714721