Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378934.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 810978 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGAAGAATCTCGTATGCC | 7858 | 0.9689535351143927 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 4021 | 0.4958210950235395 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 862 | 0.1062914160433452 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 1010 | 0.0 | 35.4205 | 42 |
| TCTCGTA | 1015 | 0.0 | 35.246017 | 41 |
| CGTATGC | 1010 | 0.0 | 35.197735 | 44 |
| GAGACCG | 1035 | 0.0 | 34.99971 | 27 |
| TCGTATG | 1025 | 0.0 | 34.902153 | 43 |
| CCGAGAA | 1045 | 0.0 | 34.880096 | 31 |
| CGAGAAG | 1055 | 0.0 | 34.76275 | 32 |
| ATCTCGT | 1030 | 0.0 | 34.732723 | 40 |
| AGACCGA | 1050 | 0.0 | 34.499714 | 28 |
| AATCTCG | 1045 | 0.0 | 34.44948 | 39 |
| GACCGAG | 1060 | 0.0 | 34.38651 | 29 |
| ACCGAGA | 1075 | 0.0 | 33.906696 | 30 |
| GTATGCC | 1050 | 0.0 | 33.428295 | 45 |
| CGAGACC | 1150 | 0.0 | 31.49974 | 26 |
| AGATCGG | 520 | 0.0 | 30.28821 | 17 |
| GATCGGA | 540 | 0.0 | 29.166426 | 18 |
| TCGGAAG | 555 | 0.0 | 28.378145 | 20 |
| ATCGGAA | 555 | 0.0 | 28.378145 | 19 |
| GAATCTC | 1265 | 0.0 | 28.2804 | 38 |
| AAGAATC | 1340 | 0.0 | 27.03336 | 36 |