FastQCFastQC Report
Mon 6 Jun 2016
ERR1379025.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379025.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1214733
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAACCC401.560845E-533.7493532
GACCGAA453.491463E-529.99942629
TCGTATG554.165817E-628.63581543
ACCGAAC406.1670406E-428.1244630
CTCGTAT608.19327E-626.24949642
CCGAACC450.001226732224.99952131
CATCTCG952.819934E-416.57862939
CCGAGAC900.003754563914.99971325
ATCGTGC950.00537399614.2114235
GCGTGAT1000.00755230313.4997414
AAGAGCG1200.001655714813.1258284
CCTTCGT1952.752986E-612.6946771
AATCGCT1607.8241945E-512.6560077
CGAGATC1902.9420138E-511.8443161
CGTTGGA2758.067582E-811.4552695
ACCGTGT1400.00525719311.24978410
CGGGATT2352.1996955E-510.53171214
CGCTCCA1500.00877881310.49979825
TCGTTGG3053.3672404E-710.3285214
CGAGTAG1800.002952520710.0006315