Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379402.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1516982 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGTATATCTCGTATGCC | 2081 | 0.13718026977248246 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 300 | 0.0 | 38.249775 | 44 |
| CGAAGTA | 305 | 0.0 | 37.62149 | 32 |
| CTCGTAT | 305 | 0.0 | 36.88746 | 42 |
| ACCGAAG | 315 | 0.0 | 36.42716 | 30 |
| TCGTATG | 310 | 0.0 | 36.290108 | 43 |
| GACCGAA | 310 | 0.0 | 36.288914 | 29 |
| AGCGGTT | 330 | 0.0 | 35.45317 | 7 |
| AGACCGA | 320 | 0.0 | 35.15489 | 28 |
| TCTCGTA | 340 | 0.0 | 34.413834 | 41 |
| GAGCGGT | 340 | 0.0 | 34.412697 | 6 |
| GAGACCG | 350 | 0.0 | 32.784443 | 27 |
| TATCTCG | 355 | 0.0 | 32.325886 | 39 |
| CCGAAGT | 355 | 0.0 | 32.32269 | 31 |
| GCGGTTC | 370 | 0.0 | 31.620396 | 8 |
| CCGAGAC | 380 | 0.0 | 31.38036 | 25 |
| AGAGCGG | 375 | 0.0 | 31.202902 | 5 |
| ATCTCGT | 370 | 0.0 | 31.015377 | 40 |
| ATGCCGA | 380 | 0.0 | 30.788279 | 22 |
| AATGCCG | 385 | 0.0 | 30.38843 | 21 |
| TCCGACT | 30 | 0.0051421137 | 30.006748 | 1 |