FastQCFastQC Report
Mon 6 Jun 2016
ERR1378626.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378626.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences642900
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA29890.4649245605848499No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA23740.3692642712708042No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGGTC3500.042.42842535
CGTCATA3750.041.99985524
TAAGCCG3700.041.95931613
TCGGTAT3500.041.7855723
CGGTATT3550.041.19703724
GCCGATG3850.040.9089516
ATTCGGT3600.040.6248621
AATTCGG3600.040.6248620
TTCGGTA3600.040.6248622
GACGTCA3900.040.38447622
TGACGTC3900.040.38447621
GAATTCG3650.040.06835619
TCGGGGA3600.039.9998614
CGATGAC4000.039.9373618
AGCCGAT3950.039.3036615
GCGGTCT3800.039.0788136
AGGCGGT3800.039.0788134
GATTCGG750.038.99986311
AAGCCGA4000.038.81236314
TCCTCGG3150.038.57129311