FastQCFastQC Report
Mon 6 Jun 2016
ERR1379006.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379006.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1069953
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT58400.5458183677226944Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCCGTC29860.2790776791130078Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCC12510.1169210236337484Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4600.037.6716143
ATGCCGT5050.034.31473544
GATCGGA8250.033.8163926
AGATCGG8350.033.6808525
ATCGGAA8450.033.2822627
TGCCGTC5400.032.5089145
AATGCCG14600.031.12703318
AGACCGG5500.031.08926225
TCGGAAG9250.030.64559628
ATGCCGA15100.030.09633819
TGCCGAG15050.030.04683920
GAGATCG9650.029.37668424
GAGACCG5850.029.22922124
TCTCGTA5950.029.11746838
CCGAGAT9750.029.07538222
ACCGGCA6100.028.76896927
CTCGTAT6050.028.63484639
CGAGATC9950.028.49095223
CGTATGC6100.028.40411841
TCGTATG6150.028.1692440