FastQCFastQC Report
Mon 6 Jun 2016
ERR1378950.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378950.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences857797
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGGAATATCTCGTATGCC112211.3081183543425776Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC51430.5995591031444503Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT12610.1470044777493976Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGAA14350.037.9436132
CCGCGGA14350.037.7868231
TATCTCG13900.037.55551539
GCGGAAT14600.037.29389633
CGGAATA14700.036.88713534
GACCGCG14700.036.73407729
TCTCGTA14150.036.73296741
CTCGTAT14250.036.47519742
CGTATGC14450.036.4353744
ACCGCGG14950.036.4207930
GAGACCG14900.036.39200627
ATCTCGT14300.036.34766440
AGACCGC14950.036.2702928
GTATGCC14550.035.72104645
TCGTATG14800.035.57372743
CGAGACC16350.033.1645826
ATATCTC16150.032.46264338
AGATCGG8600.030.87157217
GAATATC17300.030.56485236
GGAATAT17450.030.55822435