FastQCFastQC Report
Mon 6 Jun 2016
ERR1379285.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379285.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences633801
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGGTAGATCTCGTATGCC7990.12606480583022117Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGGTA1350.041.66571832
CGTATGC1450.040.3439144
AGACCGT1450.040.3439128
ACCGTGG1450.040.3439130
GACCGTG1400.040.17765429
CTCGTAT1350.040.00224342
CCGTGGT1500.037.49914631
GAGACCG1500.037.49914627
TCTCGTA1450.037.2434741
TCGTATG1600.036.5616743
ATGCCGA1650.035.4537422
ATCTCGT1600.035.15822240
CGGTTCA1600.035.155459
GCGGTTC1650.034.0901348
AATGCCG1750.033.4278121
TGCCGAG1750.033.4278123
CGGAAGA1750.032.1497341
AGCGGTT1750.032.1421247
CCGAGAC1750.032.14212425
GAGCGGT1700.031.763986