Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378995.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1192534 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6001 | 0.503214164124461 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCCGTC | 3390 | 0.2842686246262161 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GATCGGA | 805 | 0.0 | 36.612587 | 26 |
| ATCGGAA | 805 | 0.0 | 36.612587 | 27 |
| GTCCCGT | 25 | 0.0021077953 | 35.997723 | 16 |
| TATGCCG | 415 | 0.0 | 35.79287 | 43 |
| AGATCGG | 825 | 0.0 | 35.725006 | 25 |
| TCGGAAG | 870 | 0.0 | 35.170185 | 28 |
| ATGCCGT | 445 | 0.0 | 33.379868 | 44 |
| TGCCGTC | 455 | 0.0 | 32.646244 | 45 |
| CCGAGAT | 955 | 0.0 | 32.039856 | 22 |
| AATGCCG | 1475 | 0.0 | 31.269207 | 18 |
| TGCCGAG | 1485 | 0.0 | 31.057337 | 20 |
| ATGCCGA | 1495 | 0.0 | 30.850885 | 19 |
| CGAGATC | 985 | 0.0 | 30.378786 | 23 |
| GCCGAGA | 1535 | 0.0 | 29.312874 | 21 |
| CGGAAGA | 1055 | 0.0 | 29.001686 | 29 |
| GAGATCG | 1055 | 0.0 | 28.36313 | 24 |
| GAATGCC | 1670 | 0.0 | 27.752731 | 17 |
| CGGATAC | 540 | 0.0 | 27.497107 | 29 |
| TACGATC | 555 | 0.0 | 26.753939 | 33 |
| GACCGGA | 560 | 0.0 | 26.516178 | 26 |