Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378872.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1031434 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4248 | 0.41185378802715444 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATTCTGATCTCGTATGCCGTC | 3271 | 0.31713129487684133 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTCTGATCTCGTATGCC | 2717 | 0.26341966621228313 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 385 | 0.0 | 37.396996 | 43 |
| ATGCCGT | 405 | 0.0 | 35.550232 | 44 |
| TGCCGTC | 420 | 0.0 | 34.816216 | 45 |
| GATCGGA | 590 | 0.0 | 33.554295 | 26 |
| ATCGGAA | 610 | 0.0 | 32.085358 | 27 |
| TCGGAAG | 640 | 0.0 | 31.988947 | 28 |
| AGATCGG | 630 | 0.0 | 31.780954 | 25 |
| AATGCCG | 1340 | 0.0 | 26.357992 | 18 |
| GAGATCG | 760 | 0.0 | 26.344738 | 24 |
| TGCCGAG | 1370 | 0.0 | 26.27344 | 20 |
| CCGAGAT | 770 | 0.0 | 26.0026 | 22 |
| ATGCCGA | 1360 | 0.0 | 25.970375 | 19 |
| CGAGATC | 780 | 0.0 | 25.669231 | 23 |
| GAATGCC | 1535 | 0.0 | 23.009584 | 17 |
| GCCGAGA | 1560 | 0.0 | 22.208212 | 21 |
| GGAATGC | 1630 | 0.0 | 21.944565 | 16 |
| TCTCGTA | 700 | 0.0 | 20.889729 | 38 |
| GCACCCG | 65 | 4.242109E-4 | 20.76612 | 12 |
| GTATGCC | 710 | 0.0 | 20.595507 | 42 |
| CTCGTAT | 715 | 0.0 | 20.451483 | 39 |