Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378625.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 582005 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2526 | 0.4340168898892621 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1843 | 0.31666394618602933 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 220 | 0.0 | 41.929577 | 13 |
| CCGATGA | 225 | 0.0 | 40.99781 | 17 |
| CGTCATA | 230 | 0.0 | 40.106552 | 24 |
| AAGCCGA | 235 | 0.0 | 39.253223 | 14 |
| TTCCTCG | 180 | 0.0 | 38.74793 | 10 |
| GCCGATG | 240 | 0.0 | 38.435444 | 16 |
| ACGTCAT | 240 | 0.0 | 38.435444 | 23 |
| CGATGAC | 240 | 0.0 | 38.435444 | 18 |
| TCGGGGA | 245 | 0.0 | 37.65105 | 14 |
| AGGCGGT | 245 | 0.0 | 37.65105 | 34 |
| AGATTCG | 60 | 1.546141E-10 | 37.497993 | 10 |
| GATTCGG | 60 | 1.546141E-10 | 37.497993 | 11 |
| AGCCGAT | 250 | 0.0 | 36.898026 | 15 |
| GACGTCA | 250 | 0.0 | 36.898026 | 22 |
| GGCGGTC | 250 | 0.0 | 36.898026 | 35 |
| GATGACG | 250 | 0.0 | 36.898026 | 19 |
| TCGGTAT | 250 | 0.0 | 36.898026 | 23 |
| TCCTCGG | 190 | 0.0 | 36.70856 | 11 |
| CCTCGGG | 190 | 0.0 | 36.70856 | 12 |
| CTCGGGG | 190 | 0.0 | 36.70856 | 13 |