Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379153.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 584942 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCAATATCTCGTATGCC | 1085 | 0.18548847578050473 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGACCGC | 135 | 0.0 | 41.665874 | 28 |
| GACCGCT | 145 | 0.0 | 38.792366 | 29 |
| GAGACCG | 140 | 0.0 | 38.570694 | 27 |
| TCTCGTA | 140 | 0.0 | 38.570694 | 41 |
| CTCGTAT | 145 | 0.0 | 37.240673 | 42 |
| CCGCTCA | 160 | 0.0 | 36.561806 | 31 |
| CGCTCAA | 160 | 0.0 | 35.155582 | 32 |
| TATCTCG | 160 | 0.0 | 35.155582 | 39 |
| GCGGTTC | 165 | 0.0 | 34.09026 | 8 |
| CCGAGAC | 165 | 0.0 | 34.09026 | 25 |
| CGTATGC | 160 | 0.0 | 33.74936 | 44 |
| CGGTTCA | 170 | 0.0 | 33.08761 | 9 |
| GAGCGGT | 170 | 0.0 | 33.08761 | 6 |
| CGGAAGA | 165 | 0.0 | 32.732246 | 1 |
| ATCTCGT | 165 | 0.0 | 32.72665 | 40 |
| ATGCCGA | 175 | 0.0 | 32.14225 | 22 |
| TCGTATG | 170 | 0.0 | 31.764103 | 43 |
| AGAGCGG | 180 | 0.0 | 31.254747 | 5 |
| TGCCGAG | 180 | 0.0 | 31.249405 | 23 |
| AATGCCG | 175 | 0.0 | 30.856558 | 21 |