FastQCFastQC Report
Mon 6 Jun 2016
ERR1378745.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378745.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences800522
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACGAGT556.184564E-1140.90437733
CGACGAG552.750312E-936.81394232
CGAGTAT606.4264896E-933.75032835
TATCTCG606.4264896E-933.75032839
CGTATGC651.4040779E-831.15025544
TCTCGTA651.4040779E-831.15025541
ACGAGTA751.7025741E-930.00029234
CTCGTAT702.8871E-828.9252442
ACCGACG755.6341378E-827.00026330
CCGACGA856.4828782E-926.46753731
AGACCGA751.6964295E-624.00023328
GACCGAC851.8919854E-723.82376129
ATCTCGT903.2840398E-722.5002240
CGGTTCA1056.10944E-821.4261029
TCGTATG955.5335295E-721.31333443
GCGGTTC1109.980249E-820.4534668
GAGCGGT1151.5894693E-719.5702976
AGCGGTT1151.594708E-719.5641847
GAGACCG951.31490615E-518.94755427
AGATCGG600.00651314118.74783917