Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379210.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 445110 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTGTTATCTCGTATGCC | 1282 | 0.28801869200871694 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGGT | 145 | 0.0 | 43.444805 | 29 |
| AGAGCGG | 145 | 0.0 | 41.912037 | 5 |
| ATCTCGT | 145 | 0.0 | 41.893208 | 40 |
| CGTATGC | 145 | 0.0 | 41.893208 | 44 |
| TATCTCG | 145 | 0.0 | 41.893208 | 39 |
| TCGTATG | 145 | 0.0 | 41.893208 | 43 |
| ACCGGTT | 140 | 0.0 | 41.782375 | 30 |
| GCGGTTC | 150 | 0.0 | 40.510414 | 8 |
| CGGTTGT | 145 | 0.0 | 40.341606 | 32 |
| GAGCGGT | 155 | 0.0 | 39.20363 | 6 |
| GAGACCG | 155 | 0.0 | 39.19042 | 27 |
| TCTCGTA | 155 | 0.0 | 39.19042 | 41 |
| AGACCGG | 155 | 0.0 | 39.19042 | 28 |
| CGGAAGA | 150 | 0.0 | 39.014416 | 1 |
| CGGTTCA | 160 | 0.0 | 37.96572 | 9 |
| CCGGTTG | 155 | 0.0 | 37.738922 | 31 |
| GTATGCC | 175 | 0.0 | 37.282734 | 45 |
| AAGAGCG | 165 | 0.0 | 36.835934 | 4 |
| AGCGGTT | 165 | 0.0 | 36.827652 | 7 |
| CTCGTAT | 165 | 0.0 | 36.815243 | 42 |