FastQCFastQC Report
Mon 6 Jun 2016
ERR1378630.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378630.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1026169
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA31830.31018282563593325No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA25190.24547613502259374No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG3800.041.4429713
CGTCATA3950.039.8711324
CGGTATT3400.039.703624
ATGACGT4050.038.88476620
ATTCGGT3450.038.47417421
TCGGTAT3450.038.47417423
TGACGTC4100.038.41055721
CGGGGAA3550.038.0241315
AAGCCGA4150.037.94777714
TTCGGTA3500.037.92454522
CCGATGA4200.037.4960217
GGCGGTC3600.037.4960235
GATGACG4200.037.4960219
CGATGAC4200.037.4960218
GCCGATG4350.036.7202416
GACGTCA4300.036.6240222
AGGCGGT3700.036.48439434
GCGGTCT3700.036.48261636
ACGTCAT4350.036.20305623
AGCCGAT4450.035.389515