Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390637.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 534959 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 541 | 0.1011292454188078 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGTATG | 65 | 3.6743586E-10 | 34.60805 | 43 |
| CGTATGC | 75 | 1.7025741E-9 | 29.993643 | 44 |
| CTCGTAT | 75 | 1.7025741E-9 | 29.993643 | 42 |
| GATCGGA | 95 | 2.3646862E-11 | 28.415033 | 18 |
| GAGACCG | 80 | 3.3942342E-9 | 28.119043 | 27 |
| ACCGTGG | 80 | 3.3942342E-9 | 28.119043 | 30 |
| AATCTCG | 85 | 6.4737833E-9 | 26.467453 | 39 |
| ATCTCGT | 85 | 6.4792403E-9 | 26.46498 | 40 |
| CCGTGGT | 85 | 6.4792403E-9 | 26.46498 | 31 |
| AGACCGT | 85 | 6.4792403E-9 | 26.46498 | 28 |
| TCGGAAG | 105 | 8.54925E-11 | 25.708838 | 20 |
| TCTCGTA | 90 | 1.1907105E-8 | 24.994703 | 41 |
| AGATCGG | 110 | 1.5097612E-10 | 24.540255 | 17 |
| ATCGGAA | 110 | 1.5097612E-10 | 24.540255 | 19 |
| GACCGTG | 95 | 2.114757E-8 | 23.679193 | 29 |
| GTATGCC | 95 | 2.114757E-8 | 23.679193 | 45 |
| TCTGCGA | 60 | 2.442223E-4 | 22.531034 | 2 |
| GAGATCG | 120 | 4.5110937E-10 | 22.495232 | 16 |
| CGAGATC | 125 | 7.512426E-10 | 21.595425 | 15 |
| CCGAGAC | 165 | 6.002665E-11 | 19.086864 | 45 |