Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379353.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 767984 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTATCATCTCGTATGCC | 1120 | 0.14583637159107482 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 130 | 0.0 | 41.53708 | 44 |
| GAGACCG | 145 | 0.0 | 38.791813 | 27 |
| CGTGTAT | 145 | 0.0 | 38.791813 | 32 |
| CTCGTAT | 140 | 0.0 | 38.57266 | 42 |
| TCTCGTA | 140 | 0.0 | 38.57266 | 41 |
| CCGTGTA | 150 | 0.0 | 37.498753 | 31 |
| TCGTATG | 145 | 0.0 | 37.240143 | 43 |
| GCGGTTC | 160 | 0.0 | 36.561283 | 8 |
| CCGAGAC | 155 | 0.0 | 36.289116 | 25 |
| GTCCGGT | 25 | 0.002107018 | 35.998802 | 20 |
| GACCGTG | 170 | 0.0 | 35.734104 | 29 |
| AGAGCGG | 165 | 0.0 | 35.460293 | 5 |
| AGACCGT | 170 | 0.0 | 33.08713 | 28 |
| AAGAGCG | 180 | 0.0 | 32.50527 | 4 |
| AGCGGTT | 185 | 0.0 | 31.62057 | 7 |
| AATGCCG | 185 | 0.0 | 31.62057 | 21 |
| CGGAAGA | 195 | 0.0 | 31.158897 | 1 |
| ATCTCGT | 175 | 0.0 | 30.858126 | 40 |
| GAGCGGT | 195 | 0.0 | 30.000956 | 6 |
| CGGTTCA | 200 | 0.0 | 29.249027 | 9 |