Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379099.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1004023 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCCGTC | 3505 | 0.349095588447675 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCC | 3214 | 0.32011218866500074 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 430 | 0.0 | 36.099697 | 43 |
| ATGCCGT | 475 | 0.0 | 32.679726 | 44 |
| TGCCGTC | 480 | 0.0 | 32.33931 | 45 |
| CGTAGCG | 30 | 0.005152916 | 29.992895 | 23 |
| CGATACT | 675 | 0.0 | 23.330132 | 29 |
| CCGATAC | 690 | 0.0 | 23.147842 | 28 |
| TCGTATG | 680 | 0.0 | 22.82775 | 40 |
| ACCGATA | 690 | 0.0 | 22.82068 | 27 |
| CGTATGC | 695 | 0.0 | 22.335064 | 41 |
| CTCGTAT | 695 | 0.0 | 22.335064 | 39 |
| TCTCGTA | 710 | 0.0 | 22.177845 | 38 |
| GTATGCC | 720 | 0.0 | 21.871998 | 42 |
| GACCGAT | 740 | 0.0 | 21.582726 | 26 |
| AGACCGA | 755 | 0.0 | 20.855988 | 25 |
| GAGACCG | 770 | 0.0 | 20.449701 | 24 |
| ATCTCGT | 770 | 0.0 | 20.160576 | 37 |
| CGGAAGA | 615 | 0.0 | 20.147285 | 1 |
| CATCTCG | 790 | 0.0 | 19.934965 | 36 |
| AATGCCG | 1025 | 0.0 | 19.75142 | 18 |
| GATACTC | 830 | 0.0 | 19.244345 | 30 |