FastQCFastQC Report
Mon 6 Jun 2016
ERR1379362.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379362.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1394563
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA1750.037.28547741
ACCGATC1750.035.9997730
CGTATGC1950.034.61516644
GACCGAT1850.032.83762729
GAGACCG1850.032.83762727
ATCTCGT2150.031.39514740
AGACCGA1950.031.15364828
CTCGTAT2150.030.34864242
CGGTTCA2150.030.3486429
AATGCCG2150.030.34864221
CCGAGAC2100.029.99980725
GAGCGGT2200.029.6599646
CGATCGA2150.029.30213732
TCGTATG2250.028.99981343
GCGGTTC2300.028.3693858
AGAGCGG2400.028.1258285
CCGATCG2300.027.3911331
AAGAGCG2400.027.1883014
AGCGGTT2400.027.1873257
TCGAGAT2500.026.09983435