FastQCFastQC Report
Mon 6 Jun 2016
ERR1379181.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379181.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences624395
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTAGTATCTCGTATGCC14790.23686928947220912Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTC1800.041.2524958
CGTATGC1800.041.2491944
CTCGTAT1850.040.1343542
CCGCTTA1850.040.1343531
AGAGCGG1900.039.081315
TCTCGTA1900.039.07818241
GACCGCT1800.038.7492429
GAGACCG1800.038.7492427
ACCGCTT1950.038.0761830
AAGAGCG2000.037.1272474
TCGTATG2000.037.1242743
CGCTTAG2000.037.1242732
ATCTCGT2050.036.21880340
CGGTTCA2050.036.2188039
TATCTCG2050.036.21880339
CCGAGAC1950.035.7685325
AATGCCG2100.035.35645321
CGGAAGA2050.035.1268921
GAGCGGT2200.033.7520456
AGCGGTT2300.033.2628827