Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379147.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 325845 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTAATAATCTCGTATGCC | 1314 | 0.40325921834000833 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATCTCGT | 75 | 0.0 | 44.99862 | 40 |
| CGTATGC | 75 | 0.0 | 44.99862 | 44 |
| TCTCGTA | 75 | 0.0 | 44.99862 | 41 |
| GACCGGT | 80 | 0.0 | 42.186203 | 29 |
| AATCTCG | 80 | 0.0 | 42.186203 | 39 |
| ACCGGTA | 85 | 0.0 | 39.704662 | 30 |
| AGACCGG | 85 | 0.0 | 39.704662 | 28 |
| TCGTATG | 85 | 0.0 | 39.704662 | 43 |
| CTCGTAT | 90 | 0.0 | 37.498848 | 42 |
| CGGTAAT | 90 | 0.0 | 37.498848 | 32 |
| CCGTGGA | 25 | 0.0021052146 | 35.998898 | 15 |
| CCGGTAA | 95 | 0.0 | 35.525223 | 31 |
| GAGCGGT | 100 | 0.0 | 33.748966 | 6 |
| ATGCCGA | 100 | 0.0 | 33.748966 | 22 |
| AAGAGCG | 105 | 0.0 | 32.15174 | 4 |
| AGAGCGG | 105 | 0.0 | 32.1468 | 5 |
| GCGGTTC | 105 | 0.0 | 32.14187 | 8 |
| CGGTTCA | 105 | 0.0 | 32.14187 | 9 |
| TGCCGAG | 105 | 0.0 | 32.14187 | 23 |
| AGCGGTT | 110 | 0.0 | 30.680878 | 7 |