Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379001.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1128151 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5759 | 0.510481309682835 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACGAGTATCTCGTATGCCGTC | 3193 | 0.28302948807384826 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACGAGTATCTCGTATGCC | 1853 | 0.16425106213618568 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 405 | 0.0 | 38.3407 | 43 |
| TGCCGTC | 455 | 0.0 | 33.632835 | 45 |
| GATCGGA | 800 | 0.0 | 32.62259 | 26 |
| AGATCGG | 820 | 0.0 | 32.101288 | 25 |
| ATCGGAA | 815 | 0.0 | 32.022175 | 27 |
| ATGCCGT | 490 | 0.0 | 31.230488 | 44 |
| TCGGAAG | 900 | 0.0 | 29.997786 | 28 |
| CCGAGAT | 915 | 0.0 | 29.01425 | 22 |
| ATGCCGA | 1520 | 0.0 | 27.826893 | 19 |
| AATGCCG | 1535 | 0.0 | 27.554968 | 18 |
| TGCCGAG | 1570 | 0.0 | 27.083986 | 20 |
| GAGATCG | 965 | 0.0 | 27.044636 | 24 |
| GAATGCC | 1620 | 0.0 | 26.24806 | 17 |
| CGAGATC | 995 | 0.0 | 26.22922 | 23 |
| GCCGAGA | 1655 | 0.0 | 25.285141 | 21 |
| CGGAAGA | 1070 | 0.0 | 25.23178 | 29 |
| ACGAGTA | 605 | 0.0 | 24.915516 | 31 |
| TCTCGTA | 620 | 0.0 | 24.314875 | 38 |
| GACGAGT | 620 | 0.0 | 24.31272 | 30 |
| ACCGACG | 630 | 0.0 | 24.28392 | 27 |