FastQCFastQC Report
Mon 6 Jun 2016
ERR1378738.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378738.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences367068
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGATA453.8380676E-1044.99836731
GGATACG453.8380676E-1044.99836733
CGGATAC453.8380676E-1044.99836732
GACCGGA501.0768417E-940.4985329
TACGATC451.9228537E-839.99854736
TCTCGTA451.9228537E-839.99854741
GAGCGGT552.732122E-936.8268786
GATACGA552.739398E-936.81684534
CGTATGC552.739398E-936.81684544
CTCGTAT552.739398E-936.81684542
GAGACCG552.739398E-936.81684527
GTATGCC552.739398E-936.81684545
CCGAGAC552.739398E-936.81684525
AGAGCGG606.3919288E-933.757975
ACCGGAT606.4082997E-933.7487730
GCGGTTC606.4082997E-933.748778
CGGTTCA606.4082997E-933.748779
AGCGGTT606.4082997E-933.748777
AGACCGG606.4082997E-933.7487728
TCGTATG606.4082997E-933.7487743