FastQCFastQC Report
Mon 6 Jun 2016
ERR1390666.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390666.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences924239
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA659.094947E-1238.06804319
GATCGGA754.7293724E-1132.99230218
AGACCGC352.823815E-432.1353628
ACGCCGG300.005153979629.9913814
ATTGCGC300.005153979629.9913829
CTCGTAT453.4982564E-529.98975842
AGATCGG852.0372681E-1029.11085517
TCGGAAG852.0372681E-1029.10928220
GACCGCT406.175592E-428.1169229
CGTATGC507.17356E-526.99078244
TATCTCG551.3705903E-424.538439
AGCGGTT1252.910383E-1123.39454327
GACGGAA500.002267347622.49475323
GCGGTTC1104.0618033E-922.49475128
GAGCGGT1104.0618033E-922.49475126
TCTCGTA602.4718043E-422.49353641
TCGTATG602.4727097E-422.49231743
AGAGCGG1156.7830115E-921.5167225
GCGGAGC754.6115812E-520.99396532
ATCTCGT654.2455902E-420.76326240