Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379138.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 960519 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACAAATCTCGTATGCC | 4351 | 0.4529842720445925 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACAAATCTCGTATGCCGTC | 3843 | 0.4000961979929601 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 465 | 0.0 | 37.251167 | 43 |
| ATGCCGT | 520 | 0.0 | 33.311142 | 44 |
| TGCCGTC | 595 | 0.0 | 29.112259 | 45 |
| CGGAAGA | 815 | 0.0 | 23.22337 | 1 |
| CGTAACA | 875 | 0.0 | 20.567621 | 32 |
| GTATGCC | 880 | 0.0 | 20.45076 | 45 |
| CCGTAAC | 890 | 0.0 | 20.220976 | 31 |
| ACCGTAA | 890 | 0.0 | 20.220976 | 30 |
| GACCGTA | 895 | 0.0 | 20.10801 | 29 |
| CTCGTAT | 890 | 0.0 | 19.968214 | 42 |
| TCTCGTA | 895 | 0.0 | 19.856659 | 41 |
| TCGTATG | 895 | 0.0 | 19.856659 | 43 |
| CGTATGC | 900 | 0.0 | 19.746344 | 44 |
| AGACCGT | 930 | 0.0 | 19.109365 | 28 |
| ATCTCGT | 965 | 0.0 | 18.649397 | 40 |
| AATCTCG | 960 | 0.0 | 18.512197 | 39 |
| GAAGAGC | 1030 | 0.0 | 18.373857 | 3 |
| GAGACCG | 975 | 0.0 | 18.226446 | 27 |
| AATGCCG | 1215 | 0.0 | 17.58842 | 18 |
| CCGAGAC | 1030 | 0.0 | 17.471584 | 25 |