Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379143.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1565319 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACATAAATCTCGTATGCCGTC | 2609 | 0.16667529110679677 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACATAAATCTCGTATGCC | 2347 | 0.14993748878024224 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 390 | 0.0 | 35.18901 | 43 |
| ATGCCGT | 465 | 0.0 | 28.545712 | 44 |
| TGCCGTC | 545 | 0.0 | 25.181126 | 45 |
| CGGAAGA | 670 | 0.0 | 20.844915 | 1 |
| TCGTATG | 670 | 0.0 | 20.483156 | 40 |
| CTCGTAT | 675 | 0.0 | 20.331429 | 39 |
| CGTATGC | 690 | 0.0 | 20.215496 | 41 |
| CGACATA | 695 | 0.0 | 19.747614 | 32 |
| TCTCGTA | 725 | 0.0 | 19.547394 | 38 |
| GACCGAC | 765 | 0.0 | 17.938921 | 29 |
| CCGACAT | 810 | 0.0 | 17.777246 | 31 |
| AGACCGA | 805 | 0.0 | 17.605358 | 28 |
| GAGCGGT | 960 | 0.0 | 17.594465 | 3 |
| ACCGACA | 800 | 0.0 | 17.435308 | 30 |
| AGCGGTT | 970 | 0.0 | 17.413078 | 4 |
| GAGACCG | 830 | 0.0 | 17.345554 | 27 |
| AGAGCGG | 1010 | 0.0 | 17.175453 | 2 |
| CGGTTCA | 975 | 0.0 | 17.090612 | 6 |
| ATCTCGT | 850 | 0.0 | 16.939589 | 37 |
| CCGAGAC | 815 | 0.0 | 16.836761 | 22 |