Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378973.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 951013 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5996 | 0.6304855979886711 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATGTATCTCGTATGCCGTC | 3170 | 0.3333287767885402 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATGTATCTCGTATGCC | 1514 | 0.15919866500247631 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 465 | 0.0 | 36.772305 | 43 |
| CTACCCG | 25 | 0.0021069138 | 36.000042 | 13 |
| ATGCCGT | 500 | 0.0 | 34.198242 | 44 |
| TCGGAAG | 825 | 0.0 | 33.81644 | 28 |
| GATCGGA | 825 | 0.0 | 33.271015 | 26 |
| ATCGGAA | 835 | 0.0 | 32.872562 | 27 |
| TGCCGTC | 530 | 0.0 | 32.262493 | 45 |
| AGATCGG | 875 | 0.0 | 31.884075 | 25 |
| CCGAGAT | 925 | 0.0 | 29.67415 | 22 |
| AATGCCG | 1555 | 0.0 | 29.082108 | 18 |
| GAGATCG | 950 | 0.0 | 28.656422 | 24 |
| ATGCCGA | 1580 | 0.0 | 28.479548 | 19 |
| TGCCGAG | 1595 | 0.0 | 28.070658 | 20 |
| CGAGATC | 990 | 0.0 | 27.498587 | 23 |
| GAATGCC | 1645 | 0.0 | 27.492432 | 17 |
| GGAATGC | 1730 | 0.0 | 26.531822 | 16 |
| GCCGAGA | 1675 | 0.0 | 26.461325 | 21 |
| CGGAAGA | 1055 | 0.0 | 26.44414 | 29 |
| CGTATGC | 650 | 0.0 | 26.306341 | 41 |
| TATCTCG | 650 | 0.0 | 26.306341 | 36 |