FastQCFastQC Report
Mon 6 Jun 2016
ERR1390697.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390697.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences811837
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTGCGG300.005109925830.043645
CTCGTAT751.7062121E-929.9936842
CCGTATT751.7062121E-929.9936831
TCTCGTA803.3978722E-928.12080441
GACCGTA803.3996912E-928.11907229
TCGTATG803.4015102E-928.1173443
ATCTCGT901.1918019E-824.9962740
AGACCGT1001.3478711E-924.74478328
CGTATTG952.1182132E-823.67921832
ACCGTAT952.1182132E-823.67921830
GAGACCG1052.3701432E-923.5664627
CCACGCC1405.456968E-1222.49664310
ACCACGC1459.094947E-1221.7208989
CGTATGC1056.119808E-821.42273544
GATCGGA754.6079716E-520.99557518
TCGCCAA550.003940365320.45023316
CGCCCGG908.261386E-619.99578313
CATCTCG1151.5963997E-719.56229839
GCGCAAT600.00651681318.74604814
GCGCCCG600.006519130418.74489412