FastQCFastQC Report
Mon 6 Jun 2016
ERR1379309.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379309.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462389
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT356.238335E-638.57309740
TCTCGTA356.238335E-638.57309741
ACCGGGT301.1385766E-437.5016230
CGTATGC301.1385766E-437.5016244
TCGTATG301.1385766E-437.5016243
TACGTGC250.002106479635.997666
GACCGGG352.817071E-432.1442529
AGACCGG352.817071E-432.1442528
CCGAGAC352.817071E-432.1442525
GCGGTTC352.8188594E-432.140778
CGGTTCA352.8188594E-432.140779
AGAGCGG352.8188594E-432.140775
TGCCGAG352.8188594E-432.1407723
CTCGTAT453.4853485E-530.00129942
GAGACCG406.158965E-428.12621927
AAGAGCG406.1628624E-428.1231754
GAGCGGT450.001225909324.9983776
AGCGGTT500.002263431722.4985397
AACGGGT500.002263431722.49853912
AATGCCG500.002263431722.49853921