Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379115.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1119971 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCCGTC | 3527 | 0.3149188684349863 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCC | 3205 | 0.2861681239960678 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 405 | 0.0 | 34.995415 | 43 |
| ATGCCGT | 435 | 0.0 | 32.58194 | 44 |
| TGCCGTC | 445 | 0.0 | 31.849762 | 45 |
| CGGAAGA | 710 | 0.0 | 23.795303 | 1 |
| CGGATAC | 750 | 0.0 | 22.199076 | 32 |
| CCGGATA | 775 | 0.0 | 22.063597 | 31 |
| CTCGTAT | 755 | 0.0 | 21.75212 | 42 |
| TCTCGTA | 755 | 0.0 | 21.75212 | 41 |
| ACCGGAT | 770 | 0.0 | 21.62151 | 30 |
| CGTATGC | 750 | 0.0 | 21.597172 | 44 |
| GGATACG | 785 | 0.0 | 21.49592 | 33 |
| TCGTATG | 755 | 0.0 | 21.454144 | 43 |
| ATACGAT | 780 | 0.0 | 21.345264 | 35 |
| GATACGA | 785 | 0.0 | 21.209309 | 34 |
| AGACCGG | 790 | 0.0 | 21.073189 | 28 |
| TACGATC | 800 | 0.0 | 20.809774 | 36 |
| GACCGGA | 790 | 0.0 | 20.789345 | 29 |
| ACGGGTT | 55 | 0.0039404817 | 20.450954 | 13 |
| ATCTCGT | 820 | 0.0 | 20.30222 | 40 |
| GTATGCC | 810 | 0.0 | 20.275122 | 45 |