Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379125.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1160260 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTACGAATCTCGTATGCCGTC | 2738 | 0.2359815903332012 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTACGAATCTCGTATGCC | 2393 | 0.20624687570027408 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 370 | 0.0 | 38.30509 | 43 |
| ATGCCGT | 430 | 0.0 | 32.960194 | 44 |
| TGCCGTC | 460 | 0.0 | 30.810614 | 45 |
| CGGAAGA | 555 | 0.0 | 24.761251 | 1 |
| CGTATGC | 630 | 0.0 | 22.49664 | 41 |
| CGGTACG | 645 | 0.0 | 21.974405 | 29 |
| GGTACGA | 670 | 0.0 | 21.490253 | 30 |
| TCTCGTA | 660 | 0.0 | 21.474064 | 38 |
| ACGAATC | 650 | 0.0 | 21.461107 | 33 |
| GTACGAA | 655 | 0.0 | 21.297281 | 31 |
| ACCGGTA | 680 | 0.0 | 21.171482 | 27 |
| TCGTATG | 675 | 0.0 | 20.996862 | 40 |
| GACCGGT | 675 | 0.0 | 20.995052 | 26 |
| CTCGTAT | 680 | 0.0 | 20.842472 | 39 |
| CGAATCT | 680 | 0.0 | 20.514294 | 34 |
| TACGAAT | 685 | 0.0 | 20.364555 | 32 |
| CCGGTAC | 705 | 0.0 | 20.104246 | 28 |
| GTATGCC | 705 | 0.0 | 20.10338 | 42 |
| CGGCTAA | 115 | 1.5993464E-7 | 19.560608 | 17 |
| ATCTCGT | 750 | 0.0 | 19.199614 | 37 |