FastQCFastQC Report
Mon 6 Jun 2016
ERR1379200.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379200.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences297335
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACCTTATCTCGTATGCC12140.4082936754838818Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTAAT207.019798E-445.0065574
ACCGAAC1500.044.9989930
CCGAACC1600.043.59277331
CGAACCT1550.043.5474132
GACCGAA1550.043.5474129
AGACCGA1550.043.5474128
ATCTCGT1600.042.18655440
CGTATGC1600.042.18655444
GAGACCG1600.042.18655427
TCTCGTA1600.042.18655441
TCGTATG1600.042.18655443
CTCGTAT1650.040.90817642
GCGGTTC1650.040.9081768
AATGCCG1650.040.90817621
TATCTCG1650.040.90817639
AAGAGCG1750.039.8629534
CGGTTCA1700.039.704999
CGGAAGA1800.038.7556461
GAGCGGT1800.037.5054666
AGCGGTT1800.037.4991577