Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378851.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 745787 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4195 | 0.5624930442606267 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGACTATCTCGTATGCCGTC | 3268 | 0.43819481970053115 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGACTATCTCGTATGCC | 2798 | 0.37517414489659917 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 415 | 0.0 | 37.945473 | 43 |
| ATGCCGT | 445 | 0.0 | 35.892887 | 44 |
| TGCCGTC | 445 | 0.0 | 35.892887 | 45 |
| GATCGGA | 490 | 0.0 | 34.43303 | 26 |
| ATCGGAA | 495 | 0.0 | 34.08522 | 27 |
| TCGGAAG | 535 | 0.0 | 31.957281 | 28 |
| AGATCGG | 535 | 0.0 | 31.53679 | 25 |
| CCGAGAT | 600 | 0.0 | 29.245117 | 22 |
| GAGATCG | 615 | 0.0 | 27.434446 | 24 |
| CGAGATC | 640 | 0.0 | 26.362787 | 23 |
| TGCCGAG | 1310 | 0.0 | 25.587332 | 20 |
| ATGCCGA | 1315 | 0.0 | 25.490042 | 19 |
| AATGCCG | 1320 | 0.0 | 25.39349 | 18 |
| GAATGCC | 1390 | 0.0 | 24.114681 | 17 |
| GCCGAGA | 1450 | 0.0 | 22.961685 | 21 |
| GGAATGC | 1525 | 0.0 | 22.422487 | 16 |
| GACCGTT | 760 | 0.0 | 21.016228 | 26 |
| AGGAATG | 1650 | 0.0 | 20.996494 | 15 |
| CTCGTAT | 755 | 0.0 | 20.857447 | 39 |
| CCGTCAG | 65 | 4.241082E-4 | 20.765764 | 15 |