Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379166.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 362656 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATTACATCTCGTATGCC | 1405 | 0.3874194829259684 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGACCGC | 140 | 0.0 | 43.39286 | 28 |
| GACCGCA | 145 | 0.0 | 41.89655 | 29 |
| CCGAGAC | 145 | 0.0 | 41.89655 | 25 |
| TCTCGTA | 155 | 0.0 | 40.64516 | 41 |
| GAGACCG | 150 | 0.0 | 40.500004 | 27 |
| CTCGTAT | 155 | 0.0 | 39.193546 | 42 |
| GCGGTTC | 155 | 0.0 | 39.193546 | 8 |
| CGGTTCA | 155 | 0.0 | 39.193546 | 9 |
| AGAGCGG | 150 | 0.0 | 39.000004 | 5 |
| ATCTCGT | 160 | 0.0 | 37.968754 | 40 |
| CGTATGC | 160 | 0.0 | 37.968754 | 44 |
| CGCATTA | 160 | 0.0 | 37.968754 | 32 |
| CATCTCG | 160 | 0.0 | 37.968754 | 39 |
| AGCGGTT | 160 | 0.0 | 37.968754 | 7 |
| GAGCGGT | 155 | 0.0 | 37.741936 | 6 |
| TCGTATG | 165 | 0.0 | 36.81818 | 43 |
| CCGCATT | 165 | 0.0 | 36.81818 | 31 |
| TGCCGAG | 165 | 0.0 | 36.81818 | 23 |
| ACCGCAT | 170 | 0.0 | 35.735294 | 30 |
| ATGCCGA | 170 | 0.0 | 35.735294 | 22 |