FastQCFastQC Report
Mon 6 Jun 2016
ERR1378746.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378746.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences922362
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTCGA552.750312E-936.8163231
TAGTCGA250.002107416535.9981834
ATCTCGT651.4035322E-831.1522740
TCGTATG651.4035322E-831.1522743
ACCGTCG651.4035322E-831.1522730
CTCGTAT702.8863724E-828.92710742
TCTCGTA702.8863724E-828.92710741
GCGGTTC554.1636467E-628.6364698
AGAGCGG654.8576476E-727.7014165
CGTATGC755.639413E-826.99863644
GACCGTC755.639413E-826.99863629
CCGAGAC755.639413E-826.99863625
GTCGAGA801.0538315E-725.3112233
AATGCCG801.0538315E-725.3112221
CGAGAAT801.0538315E-725.3112235
CGGTTCA651.5239242E-524.2295449
GAGCGGT751.692988E-624.0065966
ATGCCGA851.8937317E-723.82232322
TCGAGAA952.1154847E-823.68301234
GTATGCC1152.6557245E-1023.47707445