FastQCFastQC Report
Mon 6 Jun 2016
ERR1390739.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390739.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1019446
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGGTG300.00515495129.99051712
CTCGTAT406.1770726E-428.1161142
TCTCGTA450.00122872224.99209841
GCTCCGC754.611456E-520.99439236
AGCTCCG654.2454235E-420.76368335
CCTTCGT1551.065564E-817.4506531
CGGAGGT1053.1190048E-517.1382833
AGATCGG800.001713725716.87049317
AAGAACG800.001714288416.86966521
CTTCGTT1855.484253E-915.839222
CGGCTAA1602.9709918E-715.46461917
CGTTGGA2202.1100277E-1015.3692285
CCGGCTA1654.2111424E-714.99599516
TCGTTGG2304.129106E-1014.7002784
AACGGGA2052.1853339E-814.263782512
TTCGTTG2601.7462298E-1013.8710323
ACTAGAC3600.013.74632819
AGCGCTC1000.00756114313.4970577
ACGGGAT1851.5317528E-613.37480513
AAACGGG2653.5470293E-912.73244911