FastQCFastQC Report
Mon 6 Jun 2016
ERR1379048.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379048.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1013713
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTA554.164831E-628.63589529
CCGTATA554.164831E-628.63589531
CTCGTAT608.191346E-626.24956742
TCCCGGA450.001226572224.9995944
GCGGTTC651.5237149E-524.2303718
CGGTTCA651.5237149E-524.2303719
AGCGGTT802.9746043E-622.499637
GAGACCG702.7029295E-522.4996327
TCTCGTA702.7029295E-522.4996341
CCGAGAC702.7029295E-522.4996325
ACCGTAT702.7029295E-522.4996330
CGTATGC754.602526E-520.99965744
AGACCGT754.602526E-520.99965728
AATCGCA550.00393659620.4542117
CCCGCCA807.5513686E-519.6910613
GAGCGGT807.559964E-519.6881476
AGAGCGG807.559964E-519.6881475
TCGTATG807.5628304E-519.68717643
TATCTCG851.2044148E-418.52910839
CTTCGTA1205.1726965E-616.8747227