FastQCFastQC Report
Mon 6 Jun 2016
ERR1390701.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390701.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences785227
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCAGCGG250.002109499935.9902721
AGATCGG755.6492354E-826.992717
ATCGGAA801.0556687E-725.30565819
GATCGGA851.8970059E-723.8170918
AGAGCGG952.1193046E-823.67780925
GCGGTTC1056.11908E-821.4227828
CGGTTCA1056.11908E-821.4227829
AGCGGTT955.541515E-721.31002827
TCGGAAG955.541515E-721.31002820
ACCGCGC550.003935798520.4542269
AAGAGCG1009.070918E-720.24452624
GAGCCGA1151.5982732E-719.55992940
CGTGAGC1454.6766218E-918.6489071
GAGCGGT1102.2599597E-618.40411626
CCGAGAC1253.8402686E-717.99513445
AGCCGAG1406.488153E-817.67379441
CGCCACC1205.085636E-616.9038075
GCCACCG1004.1112376E-415.7768876
CCACCGC1004.1654363E-415.7497557
CCGCGCC900.003752898714.99976610