Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378920.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1093908 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTAGAGATCTCGTATGCC | 10829 | 0.9899369965298728 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 6209 | 0.5675980064137021 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1435 | 0.13118104996032573 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 1475 | 0.0 | 35.84797 | 44 |
| TCTCGTA | 1470 | 0.0 | 35.816837 | 41 |
| CCGGTAG | 1490 | 0.0 | 35.787464 | 31 |
| CTCGTAT | 1480 | 0.0 | 35.728493 | 42 |
| CGGTAGA | 1500 | 0.0 | 35.54888 | 32 |
| TCGTATG | 1490 | 0.0 | 35.487083 | 43 |
| ACCGGTA | 1500 | 0.0 | 35.398888 | 30 |
| GACCGGT | 1500 | 0.0 | 35.398888 | 29 |
| ATCTCGT | 1515 | 0.0 | 34.75297 | 40 |
| AGACCGG | 1525 | 0.0 | 34.67104 | 28 |
| GTATGCC | 1555 | 0.0 | 34.0037 | 45 |
| GAGACCG | 1575 | 0.0 | 33.713223 | 27 |
| GATCTCG | 1665 | 0.0 | 31.892345 | 39 |
| AGATCGG | 1070 | 0.0 | 31.751337 | 17 |
| GAGATCT | 1710 | 0.0 | 30.921492 | 37 |
| CGAGACC | 1710 | 0.0 | 30.920078 | 26 |
| GATCGGA | 1100 | 0.0 | 30.885391 | 18 |
| GGTAGAG | 1745 | 0.0 | 30.686712 | 33 |
| AGATCTC | 1735 | 0.0 | 30.346252 | 38 |
| AGAGATC | 1785 | 0.0 | 30.000427 | 36 |