FastQCFastQC Report
Mon 6 Jun 2016
ERR1379261.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379261.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540959
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGGA556.002665E-1140.90867229
CGTATGC601.546141E-1037.50308244
TCTCGTA601.546141E-1037.50308241
ACCGGAG601.546141E-1037.4996230
ATCTCGT653.6743586E-1034.6150340
CCGAGAC653.6743586E-1034.6150325
TATCTCG754.7293724E-1132.9996639
AGACCGG708.112693E-1032.14252528
AGAGCGG708.112693E-1032.1425255
ACGCCCG300.005145136329.99969312
CGGAAGA751.6989361E-929.9996911
GCGGTTC751.6989361E-929.9996918
AGCGGTT751.6989361E-929.9996917
CTCGTAT803.3833203E-928.1273142
TCGTATG803.3833203E-928.1273143
CGGTTCA803.3869583E-928.124719
ATGCCGA856.4665073E-926.47031622
GTATGCC901.1870725E-825.00205245
AATGCCG901.1881639E-824.99974321
GAGACCG901.1881639E-824.99974327