Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378822.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 801809 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTTCATCTCGTATGCCGTC | 1371 | 0.17098835258771106 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 185 | 0.0 | 32.836655 | 43 |
| ATGCCGT | 205 | 0.0 | 28.535557 | 44 |
| TGCCGTC | 215 | 0.0 | 27.20832 | 45 |
| ATGCCCG | 50 | 0.002264491 | 22.49919 | 12 |
| GACCGTA | 270 | 0.0 | 21.665886 | 26 |
| CCGTAGT | 270 | 0.0 | 21.665886 | 28 |
| GAGACCG | 270 | 0.0 | 21.665886 | 24 |
| AGACCGT | 270 | 0.0 | 21.665886 | 25 |
| CTCGTAT | 275 | 0.0 | 21.271961 | 39 |
| CATCTCG | 290 | 0.0 | 20.947521 | 36 |
| ACCGTAG | 280 | 0.0 | 20.892103 | 27 |
| GATCGGA | 175 | 0.0 | 20.570688 | 26 |
| CGTAGTT | 285 | 0.0 | 20.525576 | 29 |
| ATCTCGT | 315 | 0.0 | 19.99928 | 37 |
| AGATCGG | 180 | 0.0 | 19.99928 | 25 |
| TCTCGTA | 305 | 0.0 | 19.917315 | 38 |
| TCGTATG | 295 | 0.0 | 19.829794 | 40 |
| CGGTTCA | 500 | 0.0 | 19.804228 | 6 |
| GTATGCC | 300 | 0.0 | 19.499296 | 42 |
| GCGGTTC | 505 | 0.0 | 19.162506 | 5 |