Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378636.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 788577 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3852 | 0.48847480968884455 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2878 | 0.3649611895857982 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCATA | 415 | 0.0 | 42.28564 | 24 |
| TAAGCCG | 420 | 0.0 | 41.78224 | 13 |
| CCGATGA | 430 | 0.0 | 40.810562 | 17 |
| AGCCGAT | 435 | 0.0 | 40.341473 | 15 |
| TCGGTAT | 375 | 0.0 | 40.19666 | 23 |
| GACGTCA | 445 | 0.0 | 39.9405 | 22 |
| TGACGTC | 445 | 0.0 | 39.9405 | 21 |
| ATGACGT | 440 | 0.0 | 39.88305 | 20 |
| ACGTCAT | 440 | 0.0 | 39.88305 | 23 |
| GCCGATG | 435 | 0.0 | 39.824276 | 16 |
| CGATGAC | 445 | 0.0 | 39.434925 | 18 |
| TTCGGTA | 385 | 0.0 | 39.152588 | 22 |
| AAGCCGA | 450 | 0.0 | 38.496796 | 14 |
| GATGACG | 465 | 0.0 | 37.738796 | 19 |
| GCGGTCT | 400 | 0.0 | 37.68437 | 36 |
| ATTCGGT | 410 | 0.0 | 36.765236 | 21 |
| GGCGGTC | 410 | 0.0 | 36.765236 | 35 |
| CTCGGGG | 370 | 0.0 | 36.48345 | 13 |
| CGGTATT | 415 | 0.0 | 36.32228 | 24 |
| TCCTCGG | 375 | 0.0 | 35.99701 | 11 |