FastQCFastQC Report
Mon 6 Jun 2016
ERR1379364.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379364.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences817441
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCC23050.2819775372167532Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC2500.043.1986544
TCTCGTA2550.042.35161241
CTCGTAT2650.040.7534442
TCGTATG2750.039.271543
CGAGTGA2850.037.8935532
ACCGAGT2900.036.46437530
AGAGCGG3150.036.4363485
GAGACCG3100.034.8376227
AAGAGCG3250.034.6227724
CATCTCG3200.034.45204539
ATCTCGT3150.034.2846440
CCGAGTG3100.034.11183531
CGGTTCA3400.033.7489439
GAGCGGT3400.033.0892266
GCGGTTC3400.033.08728
AGACCGA3250.032.5374428
GTATGCC3350.032.23779745
AGCGGTT3450.031.9555247
GATCGGA501.981176E-631.49901618
CGGAAGA3600.031.2585811