FastQCFastQC Report
Mon 6 Jun 2016
ERR1379163.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379163.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374796
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCCTAAATCTCGTATGCC15520.4140919326780435Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTTCA1550.042.096779
CGTATGC1700.041.0294144
CTCGTAT1700.041.0294142
GACCGTC1650.040.90909229
CGTCCTA1650.040.90909232
GCGGTTC1600.040.781258
TCGTATG1750.039.85714343
AGAGCGG1750.039.8571435
CGGAAGA1850.038.918921
GAGACCG1800.038.7527
TCTCGTA1800.038.7541
AATCTCG1900.037.89473739
AAGAGCG1800.037.54
CCGAGAC1800.037.525
ACCGTCC1800.037.530
AGCGGTT1750.037.2857137
ATCTCGT1900.036.7105340
CCGTCCT1850.036.48648531
AATGCCG1850.036.48648521
GAGCGGT1850.036.4864856