Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379383.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 857505 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAGCATCTCGTATGCC | 1251 | 0.14588836216698445 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGAGAC | 200 | 0.0 | 38.249157 | 25 |
| GCGGTTC | 210 | 0.0 | 37.499176 | 8 |
| ACCGAGT | 215 | 0.0 | 36.6271 | 30 |
| CCGAGTA | 215 | 0.0 | 36.6271 | 31 |
| CTCGTAT | 220 | 0.0 | 35.794666 | 42 |
| AGCGGTT | 220 | 0.0 | 35.794666 | 7 |
| AGAGCGG | 235 | 0.0 | 34.473354 | 5 |
| GACCGAG | 235 | 0.0 | 34.467327 | 29 |
| GAGACCG | 230 | 0.0 | 34.238377 | 27 |
| AGACCGA | 230 | 0.0 | 34.238377 | 28 |
| GAGCGGT | 240 | 0.0 | 33.753193 | 6 |
| CGGTTCA | 235 | 0.0 | 33.5099 | 9 |
| AAGAGCG | 245 | 0.0 | 33.06628 | 4 |
| ATCTCGT | 240 | 0.0 | 32.811775 | 40 |
| CGTATGC | 240 | 0.0 | 32.811775 | 44 |
| CGAGTAG | 240 | 0.0 | 32.811775 | 32 |
| TCTCGTA | 240 | 0.0 | 32.811775 | 41 |
| AATGCCG | 235 | 0.0 | 32.552475 | 21 |
| TCGTATG | 245 | 0.0 | 32.14215 | 43 |
| ATGCCGA | 245 | 0.0 | 31.223803 | 22 |