FastQCFastQC Report
Mon 6 Jun 2016
ERR1379325.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379325.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425922
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT453.8380676E-1044.9995342
AGACCGT501.0786607E-940.49957728
ATCTCGT552.741217E-936.81779540
GACCGTG552.741217E-936.81779529
GAGACCG552.741217E-936.81779527
TCTCGTA552.741217E-936.81779541
TCGTATG653.6561687E-1034.6150243
CGTATGC606.4119376E-933.7496544
CGGTTCA606.4119376E-933.749659
AGCGGTT606.4119376E-933.749657
CGTGTAA606.4119376E-933.7496532
AAGAGCG651.3977115E-831.1571794
CCGTGTA651.39934855E-831.1535231
GAGCGGT651.39934855E-831.153526
CCGAGAC651.39934855E-831.1535225
GCGGTTC702.8774593E-828.928278
AGAGCGG702.8774593E-828.928275
CGGAAGA851.8858736E-723.8260781
ACCGTGT851.88802E-723.8232830
TGCCGAG851.88802E-723.8232823