Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379188.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 527446 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACCATTATCTCGTATGCC | 1185 | 0.22466754890548035 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATCTCG | 180 | 0.0 | 41.249912 | 39 |
| ACCGACC | 175 | 0.0 | 41.142773 | 30 |
| CGACCAT | 175 | 0.0 | 41.142773 | 32 |
| TCGTATG | 175 | 0.0 | 41.142773 | 43 |
| TCTCGTA | 185 | 0.0 | 40.13505 | 41 |
| GACCGAC | 180 | 0.0 | 39.999916 | 29 |
| ATCTCGT | 190 | 0.0 | 39.078865 | 40 |
| CTCGTAT | 190 | 0.0 | 39.078865 | 42 |
| GCGGTTC | 190 | 0.0 | 39.078865 | 8 |
| CGGTTCA | 190 | 0.0 | 39.078865 | 9 |
| AGCGGTT | 190 | 0.0 | 39.078865 | 7 |
| AGACCGA | 185 | 0.0 | 38.91884 | 28 |
| CCGACCA | 185 | 0.0 | 38.91884 | 31 |
| GAGCGGT | 195 | 0.0 | 38.076843 | 6 |
| AGAGCGG | 195 | 0.0 | 38.076843 | 5 |
| CGGCTAA | 30 | 1.1390987E-4 | 37.49992 | 17 |
| CGTATGC | 195 | 0.0 | 36.923 | 44 |
| GAGACCG | 195 | 0.0 | 36.923 | 27 |
| CCGAGAC | 190 | 0.0 | 36.71045 | 25 |
| ATGCCGA | 190 | 0.0 | 36.71045 | 22 |