Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379403.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 651431 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATTAGATCTCGTATGCC | 1394 | 0.2139904302988344 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGAA | 180 | 0.0 | 41.249294 | 29 |
| CTCGTAT | 175 | 0.0 | 41.142155 | 42 |
| ATCTCGT | 185 | 0.0 | 40.13445 | 40 |
| CGAATTA | 185 | 0.0 | 40.13445 | 32 |
| ACCGAAT | 195 | 0.0 | 39.230103 | 30 |
| GAGACCG | 190 | 0.0 | 39.078278 | 27 |
| TCTCGTA | 185 | 0.0 | 38.91825 | 41 |
| AGACCGA | 195 | 0.0 | 38.076275 | 28 |
| CGTATGC | 190 | 0.0 | 37.89409 | 44 |
| TCGTATG | 195 | 0.0 | 36.92245 | 43 |
| CCGAATT | 210 | 0.0 | 36.42795 | 31 |
| GTATGCC | 220 | 0.0 | 33.749424 | 45 |
| CGGTTCA | 240 | 0.0 | 32.81194 | 9 |
| CGAGACC | 235 | 0.0 | 32.55264 | 26 |
| GCGGTTC | 245 | 0.0 | 32.142307 | 8 |
| AGAGCGG | 250 | 0.0 | 31.504301 | 5 |
| AGCGGTT | 245 | 0.0 | 31.223957 | 7 |
| AATGCCG | 245 | 0.0 | 31.223957 | 21 |
| CCGAGAC | 240 | 0.0 | 30.936974 | 25 |
| AAGAGCG | 250 | 0.0 | 30.604177 | 4 |