FastQCFastQC Report
Mon 6 Jun 2016
ERR1379299.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379299.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409649
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGCCA600.00649943618.7520333
CGGCTAA600.006504019718.74974617
ACTAGAC1004.15931E-415.74978619
GCCACCG950.00536868614.2103346
CGTGAGC1200.001648854713.129631
TGAACCC2106.2870604E-611.78555520
GCCACCA2554.652178E-610.5880926
GGCTAAT2057.762963E-49.87791518
GCTAATT3206.4636515E-79.843616519
GCTTGAA2352.5370592E-49.57433817
GAGCCAC2150.00120081759.4184774
AGTGAGC2658.1941704E-59.33949643
CACCTGG2050.0086044558.78036913
GGAGAAT3351.1641114E-48.0595929
GCAGTGA3104.481533E-47.98376341
CCACCAC3401.3827963E-47.94106867
CAGTGAG3206.298548E-47.734269642
AGCTACT2700.009400877.499898430
TGAGGCA4001.12271315E-47.31329352
CTAATTT4953.800964E-67.27262920