FastQCFastQC Report
Mon 6 Jun 2016
ERR1378948.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378948.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1307954
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACTTGAATCTCGTATGCC83270.636643184699156Illumina Paired End PCR Primer 2 (97% over 34bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC39600.3027629412043543Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGACTT10750.036.41779731
CGACTTG10950.035.75263632
ACCGACT11050.035.22546830
GACCGAC11150.034.90954229
CGTATGC11050.034.6146244
TCGTATG11050.034.6146243
CTCGTAT11150.034.30679742
AGACCGA11450.033.99488428
ATCTCGT11200.033.9527440
TCTCGTA11200.033.9527441
GAGACCG11700.033.26849727
GTATGCC11800.032.9865645
AATCTCG12050.031.74446539
CGAGACC13350.029.99933626
GATCGGA6500.028.38398718
ATCGGAA6500.028.38398719
TCGGAAG6450.028.2551920
AGATCGG6600.027.9539317
GACTTGA14550.027.52516433
GAATCTC14200.027.25500338