FastQCFastQC Report
Mon 6 Jun 2016
ERR1379149.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379149.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences578171
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAAGTAATCTCGTATGCC11710.20253523611526691Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA1450.041.89542841
CGTATGC1500.040.49891344
GACCGTA1500.040.49891329
TCGTATG1500.040.49891343
GAGACCG1600.039.3739427
CTCGTAT1550.039.19249342
CCGTAAG1550.039.19249331
GCGGTTC1600.037.9677288
CGGTTCA1600.037.9677289
AATGCCG1600.037.96772821
AGACCGT1600.037.96772828
CCGAGAC1600.037.96772825
CGGAAGA1650.036.833121
ACCGTAA1650.036.81719230
GAGCGGT1700.035.7374236
AGAGCGG1700.035.7374235
ATCTCGT1700.035.73433340
ATGCCGA1700.035.73433322
AGCGGTT1750.034.7133527
GTATGCC1750.034.71335245