FastQCFastQC Report
Mon 6 Jun 2016
ERR1390715.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390715.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences862145
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGAT550.003940749420.45006614
ATCTTCG807.482259E-519.7140585
CTTCGTT951.3006584E-518.9718252
AAAGCGC750.001099921118.024285
CGTATAA800.00171089316.87423910
TCGTATA800.00171089316.8742399
GCGGGTG800.001712886416.87130437
CGCCTGC1004.1248483E-415.770331
CTTCGTA1156.781965E-515.6514687
TCTTCGT1209.6362724E-515.0202356
GGATCGC900.003719397415.0202346
TCGTTGG1351.563185E-515.0176174
CCGAGAC900.003758382514.99671445
CGTTGGA1402.2005042E-514.4837975
CGGGATT1251.3823916E-414.39684514
TTCGTTG1604.9589908E-614.0798343
CCTTCGT1301.9042898E-413.8640271
ACGGGAT1454.8553012E-412.41107413
TGAGCCG2003.6681631E-612.37228945
AGGCCGA2401.7152524E-712.18483142