Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379400.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1458022 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTGAAATCTCGTATGCC | 1606 | 0.11014922957266764 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACCGATT | 185 | 0.0 | 36.48593 | 30 |
| CGTATGC | 195 | 0.0 | 35.77114 | 44 |
| TCTCGTA | 205 | 0.0 | 34.023872 | 41 |
| GACCGAT | 220 | 0.0 | 32.726772 | 29 |
| TCGTATG | 220 | 0.0 | 31.706236 | 43 |
| CGATTGA | 220 | 0.0 | 31.704062 | 32 |
| CCGATTG | 215 | 0.0 | 31.39487 | 31 |
| CTCGTAT | 225 | 0.0 | 31.001652 | 42 |
| GAGCGGT | 260 | 0.0 | 30.289038 | 6 |
| CGGTTCA | 260 | 0.0 | 30.287998 | 9 |
| GCGGTTC | 260 | 0.0 | 29.422626 | 8 |
| ATCTCGT | 250 | 0.0 | 28.79956 | 40 |
| AGCGGTT | 280 | 0.0 | 28.12457 | 7 |
| AGAGCGG | 285 | 0.0 | 27.633055 | 5 |
| AGACCGA | 260 | 0.0 | 25.961142 | 28 |
| AAGAGCG | 305 | 0.0 | 25.82105 | 4 |
| CGGAAGA | 300 | 0.0 | 25.502234 | 1 |
| TGCCGAG | 300 | 0.0 | 23.999632 | 23 |
| GAGACCG | 290 | 0.0 | 23.275507 | 27 |
| ATGCCGA | 310 | 0.0 | 23.225452 | 22 |