Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379139.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 977692 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATACAAATCTCGTATGCCGTC | 5256 | 0.5375926160795015 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACAAATCTCGTATGCC | 5142 | 0.5259325022604255 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1560 | 0.15955945226103926 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 981 | 0.10033834786415353 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 615 | 0.0 | 38.045235 | 43 |
| ATGCCGT | 685 | 0.0 | 34.48584 | 44 |
| TGCCGTC | 730 | 0.0 | 32.66819 | 45 |
| CGGAAGA | 1085 | 0.0 | 26.15603 | 1 |
| CGATACA | 1160 | 0.0 | 23.274881 | 32 |
| CCGATAC | 1175 | 0.0 | 22.786276 | 31 |
| CGTATGC | 1180 | 0.0 | 22.688564 | 44 |
| CTCGTAT | 1180 | 0.0 | 22.688564 | 42 |
| TCTCGTA | 1190 | 0.0 | 22.497902 | 41 |
| ACCGATA | 1195 | 0.0 | 22.40377 | 30 |
| TCGTATG | 1200 | 0.0 | 22.310421 | 43 |
| GACCGAT | 1205 | 0.0 | 22.217846 | 29 |
| GTATGCC | 1205 | 0.0 | 22.217846 | 45 |
| GAAGAGC | 1290 | 0.0 | 21.99157 | 3 |
| AGACCGA | 1225 | 0.0 | 21.855106 | 28 |
| GAGACCG | 1255 | 0.0 | 21.509739 | 27 |
| AATCTCG | 1265 | 0.0 | 21.164034 | 39 |
| ATCTCGT | 1300 | 0.0 | 20.767294 | 40 |
| GATACAA | 1370 | 0.0 | 20.035654 | 33 |
| GGAAGAG | 1465 | 0.0 | 19.828697 | 2 |