Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378845.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 692336 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3053 | 0.4409708580804696 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATTACATCTCGTATGCCGTC | 2812 | 0.4061611702988145 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATTACATCTCGTATGCC | 1723 | 0.24886760185805737 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 315 | 0.0 | 37.135464 | 43 |
| GCGTATA | 25 | 0.0021085893 | 35.992836 | 22 |
| ATGCCGT | 335 | 0.0 | 34.246914 | 44 |
| TGCCGTC | 345 | 0.0 | 33.906292 | 45 |
| GATCGGA | 465 | 0.0 | 31.445353 | 26 |
| ATCGGAA | 465 | 0.0 | 31.445353 | 27 |
| TCGGAAG | 480 | 0.0 | 30.931341 | 28 |
| AGATCGG | 475 | 0.0 | 30.309757 | 25 |
| AATGCCG | 970 | 0.0 | 28.059399 | 18 |
| CCGAGAT | 535 | 0.0 | 27.751486 | 22 |
| TGCCGAG | 1010 | 0.0 | 26.727354 | 20 |
| ATGCCGA | 1035 | 0.0 | 26.299112 | 19 |
| GCCGAGA | 1020 | 0.0 | 26.024231 | 21 |
| GAATGCC | 1050 | 0.0 | 25.921537 | 17 |
| TCGTATG | 455 | 0.0 | 25.214762 | 40 |
| TCTCGTA | 460 | 0.0 | 24.94069 | 38 |
| CTCGTAT | 455 | 0.0 | 24.720354 | 39 |
| CGTATGC | 470 | 0.0 | 24.410034 | 41 |
| CGCATTA | 480 | 0.0 | 24.370148 | 29 |
| AGACCGC | 480 | 0.0 | 24.370148 | 25 |