FastQCFastQC Report
Mon 6 Jun 2016
ERR1379194.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379194.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451528
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGATCATCTCGTATGCC15750.3488155773285378Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT1850.043.7820642
GACCGTT1900.042.62989829
CCGTTGA1900.042.62989831
ATCTCGT1950.041.53682740
CGTATGC1950.041.53682744
TCTCGTA1950.041.53682741
AGACCGT1950.041.53682728
ACCGTTG1950.041.53682730
CATCTCG2050.040.6081639
GAGACCG2000.040.49840527
TCGTATG2050.039.5106443
CGTTGAT2200.037.8394232
CGAGACC2250.036.99854326
GCGGTTC2200.036.820818
GTATGCC2200.036.8167345
GATCATC2250.035.99858536
CCGAGAC2300.035.21600325
AGAGCGG2400.034.6938175
CGGAAGA2450.033.9857831
AGCGGTT2400.033.7524077