Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378844.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1029435 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3547 | 0.3445579371208478 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCATATATCTCGTATGCCGTC | 2528 | 0.24557159995531527 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCATATATCTCGTATGCC | 2225 | 0.21613797859991163 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 280 | 0.0 | 37.762516 | 43 |
| ATGCCGT | 310 | 0.0 | 34.108078 | 44 |
| ATCGGAA | 595 | 0.0 | 33.647434 | 27 |
| GATCGGA | 600 | 0.0 | 33.36704 | 26 |
| AGATCGG | 615 | 0.0 | 32.92057 | 25 |
| TCGGAAG | 650 | 0.0 | 31.150955 | 28 |
| ACGTTAT | 30 | 0.005153019 | 29.992846 | 13 |
| CCGAGAT | 725 | 0.0 | 28.856585 | 22 |
| TGCCGTC | 375 | 0.0 | 28.196014 | 45 |
| GAGATCG | 745 | 0.0 | 27.478 | 24 |
| CGAGATC | 775 | 0.0 | 26.994871 | 23 |
| TGCCGAG | 1190 | 0.0 | 26.654598 | 20 |
| AATGCCG | 1185 | 0.0 | 26.575937 | 18 |
| ATGCCGA | 1195 | 0.0 | 26.354824 | 19 |
| GCCGAGA | 1285 | 0.0 | 24.333899 | 21 |
| GAATGCC | 1350 | 0.0 | 23.827648 | 17 |
| CGGAAGA | 875 | 0.0 | 23.397827 | 29 |
| GGAATGC | 1405 | 0.0 | 22.574684 | 16 |
| GAGCGGT | 1545 | 0.0 | 20.557041 | 3 |
| TCGTATG | 515 | 0.0 | 20.531076 | 40 |