FastQCFastQC Report
Mon 6 Jun 2016
ERR1379301.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379301.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences776970
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTGACG300.00514811629.99776820
CGAGGCT600.00651143718.74860629
ACCACGC1852.2424554E-512.1612599
CCGGGAG1751.8042732E-411.57056725
GCCCGGC1400.00525645411.24916414
CCCGGGA1650.001432665710.90827924
CGTGAGC1450.006795640610.8675561
ACCCGGG1450.006824969310.86126123
AAGTACC2057.7839696E-49.87731411
CACCACG2352.545217E-49.5737558
GGAGTGC4051.8175342E-89.4461743
CCACGCC2200.00148518869.20386110
TCAAAGC2504.7192327E-49.0016483
GAGCCAC3502.1963824E-69.0010684
GCAAGCT2050.0086231838.77983518
GGCCGAG2050.0086231838.77983514
GCTAATT6003.45608E-118.62435819
ACTAGAC3053.7765483E-48.11415119
GGCTAAT3653.620512E-58.01310318
GAGGCCG2550.0056506377.94058612