Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379214.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 449061 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAAGATCTCGTATGCC | 952 | 0.21199792455813354 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 110 | 0.0 | 44.998886 | 42 |
| CGTATGC | 120 | 0.0 | 41.248978 | 44 |
| CGTGCAA | 120 | 0.0 | 41.248978 | 32 |
| GACCGTG | 120 | 0.0 | 41.248978 | 29 |
| CCGTGCA | 120 | 0.0 | 41.248978 | 31 |
| GAGACCG | 120 | 0.0 | 41.248978 | 27 |
| TCTCGTA | 120 | 0.0 | 41.248978 | 41 |
| AGACCGT | 125 | 0.0 | 39.59902 | 28 |
| TCGTATG | 125 | 0.0 | 39.59902 | 43 |
| ATCTCGT | 130 | 0.0 | 38.07598 | 40 |
| CGGTTCA | 130 | 0.0 | 38.07598 | 9 |
| CCGAGAC | 135 | 0.0 | 36.66576 | 25 |
| AGCGGTT | 140 | 0.0 | 35.356266 | 7 |
| GAGCGGT | 150 | 0.0 | 34.499146 | 6 |
| GCGGTTC | 145 | 0.0 | 34.13709 | 8 |
| ACCGTGC | 145 | 0.0 | 34.13709 | 30 |
| AGAGCGG | 150 | 0.0 | 33.002857 | 5 |
| ATGCCGA | 150 | 0.0 | 31.49922 | 22 |
| CGGAAGA | 160 | 0.0 | 30.947073 | 1 |
| AATGCCG | 155 | 0.0 | 30.483118 | 21 |