FastQCFastQC Report
Mon 6 Jun 2016
ERR1390770.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390770.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462174
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAACTA206.953013E-445.099251
TAGACGA403.462992E-739.3593834
AGACGAT403.462992E-739.3593835
CCGTAGA403.462992E-739.3593831
CGTAGAC403.462992E-739.3593832
GACGATC403.462992E-739.3593836
ACGCCCG250.00210991335.98571812
CTCGTAT458.711959E-734.98611542
TCTCGTA458.711959E-734.98611541
GAGACCG401.5627951E-533.7366127
CGTATGC501.9843646E-631.48750344
GTAGACG501.9843646E-631.48750333
TCGTATG501.9843646E-631.48750343
AGACCGT602.4220935E-729.988128
GACCGTA554.170717E-628.62500429
CGCCCGG507.168632E-526.98928813
ATCTCGT651.5258716E-524.22115940
ACCGTAG651.5258716E-524.22115930
CACGCCC500.00226352522.49837711
ACGATCT702.7067608E-522.49107637