FastQCFastQC Report
Mon 6 Jun 2016
ERR1378839.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378839.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences951944
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT26140.2745959846377518Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGCATATCTCGTATGCC23500.24686326086408444Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGCATATCTCGTATGCCGTC21960.23068583866277848Illumina Paired End PCR Primer 2 (96% over 32bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3150.037.85444643
ATGCCGT3200.036.559944
TGCCGTC3450.033.9106345
GATCGGA4400.031.69729226
TCGGAAG4550.030.65715628
ATCGGAA4550.030.65232527
AGATCGG4600.030.32074225
CCGAGAT5650.025.48223322
GAGATCG5750.024.6478324
CGAGATC6000.023.99577123
ATGCCGA11000.023.51858319
TGCCGAG11100.023.30670220
AATGCCG11100.023.10282118
AGACCGT6650.022.32923728
CGTATGC6450.022.32399244
GACCGTT6450.022.32399229
TCGTATG6550.021.98316643
CTCGTAT6450.021.9751842
CCGTTGC6650.021.6537331
ACCGTTG6650.021.65259430