FastQCFastQC Report
Mon 6 Jun 2016
ERR1378775.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378775.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1186979
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1200.035.62303543
ATGCCGT1450.029.4811344
TGCCGTC1600.026.71727445
TCTCGTA1800.022.49875838
AGACCGT1950.021.92186525
CTCGTAT2000.021.3738239
GACCGTC2050.020.85250726
ACCGTCT2200.020.45341527
ATGCCGA3300.019.77163519
AGATCGG1151.5963815E-719.56413725
GAGACCG2200.019.43074424
AATGCCG3400.019.19011718
TCGTATG2350.019.14787940
CGTATGC2250.018.99895141
GATCGGA1202.4982728E-718.74896626
GCGGTTC3500.018.6488975
AGCGGTT3600.018.1308734
TGCCGAG3600.018.12399920
ATCTCGT2250.017.99900637
GAGCGGT3650.017.8825043