Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378779.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1001781 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACTTACATCTCGTATGCC | 1485 | 0.14823599169878449 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACTTACATCTCGTATGCCGTC | 1230 | 0.12278132645757904 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 160 | 0.0 | 37.96555 | 43 |
| TGCCGTC | 235 | 0.0 | 25.848886 | 45 |
| ATGCCGT | 245 | 0.0 | 25.712118 | 44 |
| TCGTATG | 335 | 0.0 | 22.833895 | 43 |
| CTCGTAT | 330 | 0.0 | 22.498104 | 42 |
| CGACTTA | 340 | 0.0 | 22.498102 | 32 |
| CGTATGC | 355 | 0.0 | 22.181229 | 44 |
| ACCGACT | 345 | 0.0 | 22.172043 | 30 |
| CCGACTT | 365 | 0.0 | 20.957136 | 31 |
| TCTCGTA | 370 | 0.0 | 20.065876 | 41 |
| GACCGAC | 395 | 0.0 | 18.795883 | 29 |
| ATCGGAA | 195 | 1.8189894E-12 | 18.459982 | 27 |
| AGACCGA | 410 | 0.0 | 18.108229 | 28 |
| ATCTCGT | 425 | 0.0 | 17.998484 | 40 |
| CGGACGA | 75 | 0.0011107158 | 17.998484 | 23 |
| ATGCCGA | 590 | 0.0 | 17.540895 | 19 |
| GTATGCC | 470 | 0.0 | 17.232592 | 45 |
| CGGAAGA | 460 | 0.0 | 17.129236 | 1 |
| GACTTAC | 450 | 0.0 | 16.998568 | 33 |
| TCGGAAG | 225 | 1.8189894E-12 | 16.998568 | 28 |