FastQCFastQC Report
Mon 6 Jun 2016
ERR1379026.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379026.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences645076
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGA403.4566256E-739.3727628
CGCAAGT250.002107012835.9979510
ACCGACC458.6959335E-734.9980130
CTCGTAT401.5592888E-533.75069842
TCGTATG401.5592888E-533.75069843
GACCGAC501.9807158E-631.49820929
GAGACCG501.9807158E-631.49820927
ACTCGTG300.00513728630.0099261
AAGGGCG300.005145082730.00062242
CGTATGC453.4880024E-530.00061844
TCTCGTA453.4880024E-530.00061841
CGACCCA608.187877E-626.24850832
AGCGGTT608.187877E-626.2485087
AATGCCG608.187877E-626.24850821
CACCGCG450.001226377724.9985798
GAGCGGT651.5194206E-524.2369066
GCGGTTC651.52307475E-524.2293938
CGGTTCA651.52307475E-524.2293939
CGGGATT651.52307475E-524.22939314
CCGACCC651.52307475E-524.22939331