FastQCFastQC Report
Mon 6 Jun 2016
ERR1379015.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379015.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences850299
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT43370.510055874462983Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGTGATCTCGTATGCCGTC24460.28766351601025053Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGTGATCTCGTATGCC15040.17687895669640916Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2750.036.0025943
GATCGGA4700.033.03040326
ATCGGAA4650.032.4178727
ATGCCGT3050.031.7235944
AGATCGG5400.029.5819825
TCGGAAG5100.029.55747228
TGCCGTC3350.028.88267545
CCGAGAT5800.027.54184322
AATGCCG9600.026.48316618
TGCCGAG9950.026.00383820
ATGCCGA9900.025.68064319
GACCGGA4000.025.31134226
GCCGAGA10250.025.02324721
ACCGGAT4150.024.93861827
GAATGCC10400.024.8786717
CGAGATC6500.024.57579823
AGACCGG4150.023.8543325
CCGGATG4250.023.8224428
CGGAAGA6350.023.7390729
CTCGTAT4300.023.5468239