Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378997.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1222701 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5648 | 0.4619281410581982 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTCTATCTCGTATGCCGTC | 3292 | 0.26923998590006876 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTCTATCTCGTATGCC | 1418 | 0.11597275212827994 | Illumina Paired End PCR Primer 2 (97% over 38bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATCGGAA | 770 | 0.0 | 35.940872 | 27 |
| GATCGGA | 765 | 0.0 | 35.881668 | 26 |
| TATGCCG | 440 | 0.0 | 34.267715 | 43 |
| TCGGAAG | 840 | 0.0 | 33.747974 | 28 |
| AGATCGG | 815 | 0.0 | 33.68034 | 25 |
| AATGCCG | 1435 | 0.0 | 30.416294 | 18 |
| ATGCCGT | 500 | 0.0 | 30.155592 | 44 |
| ATGCCGA | 1460 | 0.0 | 29.895466 | 19 |
| TGCCGTC | 510 | 0.0 | 29.564306 | 45 |
| TGCCGAG | 1525 | 0.0 | 28.916298 | 20 |
| GAGATCG | 970 | 0.0 | 28.298428 | 24 |
| CCGAGAT | 990 | 0.0 | 28.18128 | 22 |
| CGGAAGA | 1020 | 0.0 | 27.351301 | 29 |
| CGAGATC | 1005 | 0.0 | 27.31291 | 23 |
| GAATGCC | 1640 | 0.0 | 27.025818 | 17 |
| GCCGAGA | 1635 | 0.0 | 26.283903 | 21 |
| TCGTATG | 575 | 0.0 | 26.217964 | 40 |
| CCGCTCT | 575 | 0.0 | 26.215818 | 28 |
| GACCGCT | 580 | 0.0 | 25.990883 | 26 |
| CGTATGC | 590 | 0.0 | 25.553493 | 41 |