FastQCFastQC Report
Mon 6 Jun 2016
ERR1378847.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378847.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000631
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT29800.29781208057715586Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTTATATCTCGTATGCCGTC22710.22695679026534257Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTTATATCTCGTATGCC21910.2189618350820632Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3100.039.91820543
ATGCCGT3900.031.72985344
TGCCGTC4300.030.87120245
GATCGGA4100.029.08016426
TCGGAAG4250.028.58455328
ATCGGAA4200.028.38778127
AGATCGG4650.025.15679425
TCGTATG5250.023.99930840
CTCGTAT5200.023.79739239
ATGCCGA10250.023.70307719
TGCCGAG10300.023.58801520
CGTATGC5250.023.57074741
TCTCGTA5300.023.34488138
AATGCCG10750.023.22840518
ATCTCGT5600.022.4993537
CGGCTTA5500.022.497129
TATCTCG5650.022.30024136
GCCGAGA11300.021.8987421
CCGAGAT5550.021.48264522
GTATGCC5900.021.35531642