Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379144.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1212657 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATTAGATCTCGTATGCC | 3601 | 0.2969512401280824 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATTAGATCTCGTATGCCGTC | 3363 | 0.2773249154542463 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 380 | 0.0 | 37.296993 | 43 |
| ATGCCGT | 430 | 0.0 | 32.436954 | 44 |
| TGCCGTC | 505 | 0.0 | 27.619585 | 45 |
| CGGAAGA | 815 | 0.0 | 25.43794 | 1 |
| CGAATTA | 820 | 0.0 | 25.241129 | 32 |
| CTCGTAT | 805 | 0.0 | 25.151476 | 42 |
| TCTCGTA | 805 | 0.0 | 25.151476 | 41 |
| CGTATGC | 840 | 0.0 | 24.639132 | 44 |
| TCGTATG | 845 | 0.0 | 24.493338 | 43 |
| CCGAATT | 860 | 0.0 | 24.067122 | 31 |
| GACCGAA | 860 | 0.0 | 24.064144 | 29 |
| ACCGAAT | 880 | 0.0 | 23.772854 | 30 |
| GTATGCC | 885 | 0.0 | 23.132095 | 45 |
| AGACCGA | 895 | 0.0 | 23.123089 | 28 |
| ATCTCGT | 905 | 0.0 | 22.372307 | 40 |
| GAGACCG | 930 | 0.0 | 22.252865 | 27 |
| TTAGATC | 965 | 0.0 | 21.215284 | 36 |
| CCGAGAC | 1025 | 0.0 | 20.190401 | 25 |
| TAGATCT | 1035 | 0.0 | 19.9978 | 37 |
| GAATTAG | 1095 | 0.0 | 19.723858 | 33 |