Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379108.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 899397 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTGAGATCTCGTATGCC | 2016 | 0.22415018062101605 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTGAGATCTCGTATGCCGTC | 1792 | 0.19924460499645874 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 320 | 0.0 | 34.448784 | 43 |
| TGCCGTC | 385 | 0.0 | 28.632755 | 45 |
| ATGCCGT | 395 | 0.0 | 27.907873 | 44 |
| AGACCGT | 460 | 0.0 | 24.45344 | 25 |
| CGTATGC | 470 | 0.0 | 23.45449 | 41 |
| CTCGTAT | 470 | 0.0 | 23.45449 | 39 |
| TCTCGTA | 470 | 0.0 | 23.45449 | 38 |
| CCGTGTG | 505 | 0.0 | 21.828932 | 28 |
| GACCGTG | 510 | 0.0 | 21.614923 | 26 |
| CGGAAGA | 345 | 0.0 | 21.54538 | 1 |
| TCGTATG | 515 | 0.0 | 21.405071 | 40 |
| ACCGTGT | 525 | 0.0 | 20.997353 | 27 |
| GTATGCC | 540 | 0.0 | 20.830706 | 42 |
| GAGCGGT | 610 | 0.0 | 20.670374 | 3 |
| CGTGTGA | 535 | 0.0 | 20.60488 | 29 |
| AGCGGTT | 615 | 0.0 | 20.502321 | 4 |
| AATGCCG | 605 | 0.0 | 20.451967 | 18 |
| ATCTCGT | 540 | 0.0 | 20.414093 | 37 |
| CCGAGAC | 540 | 0.0 | 20.414093 | 22 |
| AAGAGCG | 635 | 0.0 | 20.219036 | 1 |