FastQCFastQC Report
Mon 6 Jun 2016
ERR1378634.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378634.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences893923
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA33740.3774374302932132No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA26670.2983478442774154No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGTAT3800.040.85262323
CGGTATT3850.040.3220724
GACGTCA3650.040.06590322
TAAGCCG3650.040.06590313
CGTCATA3750.039.5974424
ACGTCAT3700.039.52447523
GGCGGTC4200.039.10461435
ATGACGT3800.039.07642420
AGCCGAT3750.038.9974815
TGACGTC3750.038.9974821
GCCGATG3750.038.9974816
AGGCGGT4100.038.96307434
TATGCCG1400.038.56893543
AAGCCGA3800.038.48435614
CGATGAC3800.038.48435618
GCGGTCT4200.038.03325336
TTCGGTA4100.037.86340722
TTCCTCG3450.037.82364310
GATGACG3900.037.49757419
AATTCGG4250.037.05642720