FastQCFastQC Report
Mon 6 Jun 2016
ERR1378625.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378625.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences582005
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA25260.4340168898892621No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA18430.31666394618602933No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG2200.041.92957713
CCGATGA2250.040.9978117
CGTCATA2300.040.10655224
AAGCCGA2350.039.25322314
TTCCTCG1800.038.7479310
GCCGATG2400.038.43544416
ACGTCAT2400.038.43544423
CGATGAC2400.038.43544418
TCGGGGA2450.037.6510514
AGGCGGT2450.037.6510534
AGATTCG601.546141E-1037.49799310
GATTCGG601.546141E-1037.49799311
AGCCGAT2500.036.89802615
GACGTCA2500.036.89802622
GGCGGTC2500.036.89802635
GATGACG2500.036.89802619
TCGGTAT2500.036.89802623
TCCTCGG1900.036.7085611
CCTCGGG1900.036.7085612
CTCGGGG1900.036.7085613