Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378623.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 966848 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3728 | 0.3855828423909446 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2808 | 0.2904282782815913 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 330 | 0.0 | 40.223804 | 13 |
| TCGGTAT | 360 | 0.0 | 39.371605 | 23 |
| GACGTCA | 340 | 0.0 | 39.040752 | 22 |
| ATTCGGT | 365 | 0.0 | 38.832268 | 21 |
| CGGTATT | 365 | 0.0 | 38.832268 | 24 |
| TGACGTC | 350 | 0.0 | 38.568104 | 21 |
| TATGCCG | 70 | 0.0 | 38.568104 | 43 |
| AATTCGG | 370 | 0.0 | 38.30751 | 20 |
| ACGTCAT | 350 | 0.0 | 37.9253 | 23 |
| GCGGTCT | 375 | 0.0 | 37.79674 | 36 |
| GAATTCG | 385 | 0.0 | 37.399372 | 19 |
| CGATGAC | 355 | 0.0 | 37.391144 | 18 |
| CGTCATA | 355 | 0.0 | 37.391144 | 24 |
| TCGGGGA | 380 | 0.0 | 37.299416 | 14 |
| GATGACG | 360 | 0.0 | 36.871822 | 19 |
| AGGCGGT | 385 | 0.0 | 36.815006 | 34 |
| AGCCGAT | 365 | 0.0 | 36.366726 | 15 |
| CGGGGAA | 390 | 0.0 | 36.343018 | 15 |
| TTCGGTA | 395 | 0.0 | 35.882984 | 22 |
| AAGCCGA | 370 | 0.0 | 35.875286 | 14 |