Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378970.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 751217 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6677 | 0.8888244009387434 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTATCTATCTCGTATGCCGTC | 3259 | 0.43382937287095474 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTATCTATCTCGTATGCC | 1618 | 0.21538383716023465 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 854 | 0.11368219835280619 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 375 | 0.0 | 36.60525 | 43 |
| GATCGGA | 850 | 0.0 | 36.524925 | 26 |
| ATCGGAA | 850 | 0.0 | 36.524925 | 27 |
| TCGGAAG | 880 | 0.0 | 36.302364 | 28 |
| ATGCCGT | 385 | 0.0 | 35.654465 | 44 |
| TGCCGTC | 390 | 0.0 | 35.19736 | 45 |
| AGATCGG | 885 | 0.0 | 34.826233 | 25 |
| CCGAGAT | 985 | 0.0 | 31.062178 | 22 |
| GAGATCG | 1005 | 0.0 | 30.444023 | 24 |
| CGAGATC | 1020 | 0.0 | 29.996319 | 23 |
| AATGCCG | 1510 | 0.0 | 29.946655 | 18 |
| ATGCCGA | 1515 | 0.0 | 29.84782 | 19 |
| TGCCGAG | 1520 | 0.0 | 29.749638 | 20 |
| CGGAAGA | 1100 | 0.0 | 29.04189 | 29 |
| GCCGAGA | 1580 | 0.0 | 28.192741 | 21 |
| GAATGCC | 1630 | 0.0 | 28.019896 | 17 |
| GGAATGC | 1735 | 0.0 | 26.324167 | 16 |
| AGGAATG | 1820 | 0.0 | 25.094742 | 15 |
| GACCGGT | 545 | 0.0 | 24.767601 | 26 |
| ACCGGTA | 550 | 0.0 | 24.54244 | 27 |