FastQCFastQC Report
Mon 6 Jun 2016
ERR1379303.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379303.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512718
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGGT403.4537516E-739.3742329
AGACCGG552.743036E-936.81746328
CTCGTAT458.6887485E-734.99931742
CCGGTTG458.6887485E-734.99931731
AAGAGCG501.9775835E-631.5024594
CGGTTGG501.9790896E-631.49938632
TCGTATG501.9790896E-631.49938643
CGTATGC554.159656E-628.63580544
GCGGTTC554.159656E-628.6358058
AGCGGTT554.159656E-628.6358057
AATGCCG554.159656E-628.63580521
GAGCGGT554.159656E-628.6358056
ATGCCGA554.159656E-628.63580522
AGAGCGG608.175031E-626.2520475
ACCGGTT608.181225E-626.24948930
TGCCGAG608.181225E-626.24948923
TCTCGTA651.5218429E-524.23029541
GAGACCG751.6948779E-623.9995327
GTATGCC751.6948779E-623.9995345
CGGAAGA702.6915013E-522.508341