FastQCFastQC Report
Mon 6 Jun 2016
ERR1378615.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378615.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences620828
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA29970.4827424020823803No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA23410.3770770648231072No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCCGAT3250.044.30380615
TAAGCCG3300.043.63253813
ATGACGT3400.043.01093320
GACGTCA3600.041.24638422
CCGATGA3550.041.1935717
CGTCATA3550.041.1935724
GCCGATG3500.041.13924816
ACGTCAT3650.040.68136223
TGACGTC3600.040.6214421
GATGACG3750.040.19647619
TTCCTCG2550.039.702410
CGATGAC3800.039.0755218
TCGGGGA3200.038.66848414
AATTCGG3150.038.56804720
AAGCCGA3750.038.39663314
CGGGGAA3250.038.07358615
GGCGGTC3200.037.9654235
TTCGGTA3350.036.93705722
GCGGTCT3300.036.81495336
TCGGTAT3300.036.81495323