FastQCFastQC Report
Mon 6 Jun 2016
ERR1378658.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378658.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences939736
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC708.1490725E-1032.140544
AATGCCG651.4048055E-831.14990221
TCGTATG801.0004442E-1030.93358643
TCTCGTA803.3960532E-928.12293841
GACCGTC654.874928E-727.69027529
ACCGTCC755.640868E-826.9980230
CGTCCTA755.640868E-826.9980232
GCGGTTC608.1975195E-626.2466778
GATCGCA500.002256877522.5127244
CTCGTAT903.2879325E-722.4983542
AACCGCT500.002265970522.49715243
ATGCCGA955.53624E-721.31309322
AAGAGCG1109.919859E-820.4661144
AGACCGT1009.057676E-720.24851428
CCGAGAC908.257644E-619.99746925
AGAGCGG1102.2429322E-618.4195025
GAGCGGT1002.0360607E-518.010186
TGCCGAG1002.0482183E-517.99772323
AGCGGTT901.8670256E-417.4977867
ATCTCGT1205.1746883E-616.87376240