Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379083.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 924666 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATAGAATCTCGTATGCCGTC | 3353 | 0.3626174207767994 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATAGAATCTCGTATGCC | 2841 | 0.30724607588037195 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 465 | 0.0 | 35.800858 | 43 |
| ATGCCGT | 465 | 0.0 | 35.317062 | 44 |
| TGCCGTC | 510 | 0.0 | 33.08307 | 45 |
| GACCGTA | 660 | 0.0 | 24.540295 | 26 |
| CTCGTAT | 675 | 0.0 | 24.329533 | 39 |
| CGTATAG | 680 | 0.0 | 24.150639 | 29 |
| TCGTATG | 680 | 0.0 | 24.150639 | 40 |
| CCGTATA | 685 | 0.0 | 23.974356 | 28 |
| ACCGTAT | 685 | 0.0 | 23.97306 | 27 |
| CGTATGC | 690 | 0.0 | 23.800629 | 41 |
| TCTCGTA | 700 | 0.0 | 23.45935 | 38 |
| AGACCGT | 705 | 0.0 | 22.975134 | 25 |
| AATCTCG | 730 | 0.0 | 22.807121 | 36 |
| ATCTCGT | 740 | 0.0 | 22.19488 | 37 |
| GAGACCG | 755 | 0.0 | 21.453602 | 24 |
| GTATGCC | 795 | 0.0 | 20.940125 | 42 |
| GTATAGA | 800 | 0.0 | 20.809248 | 30 |
| AGCGGTT | 975 | 0.0 | 20.555262 | 4 |
| CGGAAGA | 595 | 0.0 | 20.071447 | 1 |
| AAGAGCG | 1015 | 0.0 | 19.980038 | 1 |