FastQCFastQC Report
Mon 6 Jun 2016
ERR1379370.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379370.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences871466
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTAGATCTCGTATGCC11820.13563351869149226Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGGT1650.042.27245729
CGGTGTA1750.039.85688832
ACCGGTG1800.038.74975230
CGTATGC1800.038.74975244
CTCGTAT1850.037.7024642
CCGGTGT1850.037.7024631
TCGTATG1900.036.7102943
TCTCGTA2050.034.02417441
AGACCGG2300.031.3041528
ATCTCGT2250.030.999840
CCGAGAC2250.030.999825
GAGCGGT2500.030.5998046
GTATGCC2300.030.32589345
GCGGTTC2600.029.422898
AAGAGCG2550.029.1191334
GAGACCG2400.029.06231727
GGTGTAG2550.028.23511733
AGCGGTT2650.028.018697
CGGTTCA2700.027.4998259
GTAGATC2550.027.35276836