FastQCFastQC Report
Mon 6 Jun 2016
ERR1379138.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379138.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences960519
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACAAATCTCGTATGCC43510.4529842720445925Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACAAATCTCGTATGCCGTC38430.4000961979929601Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4650.037.25116743
ATGCCGT5200.033.31114244
TGCCGTC5950.029.11225945
CGGAAGA8150.023.223371
CGTAACA8750.020.56762132
GTATGCC8800.020.4507645
CCGTAAC8900.020.22097631
ACCGTAA8900.020.22097630
GACCGTA8950.020.1080129
CTCGTAT8900.019.96821442
TCTCGTA8950.019.85665941
TCGTATG8950.019.85665943
CGTATGC9000.019.74634444
AGACCGT9300.019.10936528
ATCTCGT9650.018.64939740
AATCTCG9600.018.51219739
GAAGAGC10300.018.3738573
GAGACCG9750.018.22644627
AATGCCG12150.017.5884218
CCGAGAC10300.017.47158425