FastQCFastQC Report
Mon 6 Jun 2016
ERR1378890.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378890.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1099287
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT47840.43519117391545614Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGACCAAATCTCGTATGCCGTC30340.2759970781060815Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACCAAATCTCGTATGCC27850.2533460324737762Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4000.035.43556643
ATGCCGT4050.034.9980944
TGCCGTC4350.032.58442745
GATCGGA6400.031.98462126
ATCGGAA6400.031.98462127
AGATCGG6750.030.65941225
TCGGAAG6900.030.650528
CCGAGAT7450.027.4767222
AATGCCG13000.026.82057818
GAGATCG7800.026.24379324
ATGCCGA13450.026.09048319
TGCCGAG13600.025.63731820
CGAGATC8050.025.42876823
GCCGAGA14350.023.98387321
GAATGCC14750.023.79098317
CTCGTAT6150.023.04752239
CGTATGC6200.022.86165641
GGAATGC15650.022.56654716
TCGTATG6300.022.49877240
GACCGGA6500.022.14860526