FastQCFastQC Report
Mon 6 Jun 2016
ERR1390741.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390741.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences836099
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGCCC250.002108031735.99564411
ACGGGAT754.609243E-520.99494713
GCCACCG807.4734475E-519.716966
CCTTCGT1051.4240577E-619.3145731
TCGCACC600.006453091718.7780576
GCGCCCG600.0065180918.74549112
ATCTTCG1354.195499E-818.3607675
CGCCCGG952.823377E-416.5749613
AGATCGC850.00253993615.9051673
CTTCGTA1156.785973E-515.650287
CACGTGC900.003715630215.0224461
CGGGATT1056.045446E-414.99639114
CCGGCTA1251.3825645E-414.39653716
CGGCTAA1108.6005405E-414.31473717
CCACCGC950.00537870414.2088087
TCTTCGT1604.945052E-614.0835446
TCGAACT1453.1094023E-513.96215829
GCCGAGG1951.8321771E-713.84282344
TCGTATA1000.00755479513.4983679
CTTCGTT1352.6172493E-413.3532852