FastQCFastQC Report
Mon 6 Jun 2016
ERR1390621.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390621.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences226873
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA301.13326845E-437.5211375
CTTCGTA401.5561152E-533.7466967
TCGTATA401.5561152E-533.7466969
GGAAACG352.8149103E-432.1397069
CCTTCGT300.00509692630.0500491
CTTCGTT300.0051245130.0169092
TTCGTTG300.0051245130.0169093
CGTATAA453.4809615E-529.9970610
GAAACGG406.1542983E-428.12224610
TTCGTAT507.138287E-526.9973558
ATCTTCG602.4496828E-422.5126825
TCTTCGT602.4606808E-422.4977976
AAACGGG500.0022603422.49779511
GGTAGGT550.00392918320.45254133
ACTAGAC1051.4364941E-619.28382519
ATATCTT1602.9137664E-715.47746853
TATCTTC1654.13027E-715.0084544
AATATCT1758.034185E-714.1508282
AACTAGA1504.244905E-513.49867818
TCTACTA1000.0075313813.4986776