FastQCFastQC Report
Mon 6 Jun 2016
ERR1379322.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379322.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417842
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGATC207.028863E-444.99904330
CTCGTAT250.002105797235.99923342
GAGACCG250.002105797235.99923327
AGAGCGG300.005141077630.0029535
CGTATGC300.005144087629.99936144
CCGATCA300.005144087629.99936131
GACCGAT300.005144087629.99936129
GAGCGGT300.005144087629.9993616
AGACCGA300.005144087629.99936128
CGATCAA300.005144087629.99936132
CCTTCGT702.6881551E-522.5102981
CGGGATT500.002262496222.4995214
ACGGGAT550.003932894720.45411113
ACCTCCG550.003932894720.45411135
CTTCGTT952.8118593E-416.5805782
TCGTTGG952.8118593E-416.5805784
CGTTGGA1004.1560165E-415.751555
GTTCAGC900.00374912814.999680511
GTCACAA1056.0264417E-414.9996839
TTCGTTG1250.002245709812.6012393