FastQCFastQC Report
Mon 6 Jun 2016
ERR1378949.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378949.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences841267
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATTTTATCTCGTATGCC73150.8695218046113778Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC33870.4026070201255963Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATCTCG7950.036.51107439
TCTCGTA8000.036.2828841
CGCATTT8550.036.0521132
CTCGTAT8000.036.00375742
ATCTCGT8100.035.8349440
GACCGCA8500.035.73477629
AGACCGC8500.035.73477628
GAGACCG8600.035.5808827
CCGCATT8750.034.9709231
TCGTATG8250.034.9106643
ACCGCAT8800.034.7722230
CGTATGC8300.034.70035644
GTATGCC8450.033.55180445
AGATCGG5650.032.65439217
GATCGGA5900.031.27073318
ATCGGAA5850.031.15339319
CGAGATC6100.030.98315815
TCGGAAG5950.030.62980720
CGAGACC10350.029.56478526
GAGATCG6400.029.17926416