Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378630.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1026169 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3183 | 0.31018282563593325 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2519 | 0.24547613502259374 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 380 | 0.0 | 41.44297 | 13 |
| CGTCATA | 395 | 0.0 | 39.87113 | 24 |
| CGGTATT | 340 | 0.0 | 39.7036 | 24 |
| ATGACGT | 405 | 0.0 | 38.884766 | 20 |
| ATTCGGT | 345 | 0.0 | 38.474174 | 21 |
| TCGGTAT | 345 | 0.0 | 38.474174 | 23 |
| TGACGTC | 410 | 0.0 | 38.410557 | 21 |
| CGGGGAA | 355 | 0.0 | 38.02413 | 15 |
| AAGCCGA | 415 | 0.0 | 37.947777 | 14 |
| TTCGGTA | 350 | 0.0 | 37.924545 | 22 |
| CCGATGA | 420 | 0.0 | 37.49602 | 17 |
| GGCGGTC | 360 | 0.0 | 37.49602 | 35 |
| GATGACG | 420 | 0.0 | 37.49602 | 19 |
| CGATGAC | 420 | 0.0 | 37.49602 | 18 |
| GCCGATG | 435 | 0.0 | 36.72024 | 16 |
| GACGTCA | 430 | 0.0 | 36.62402 | 22 |
| AGGCGGT | 370 | 0.0 | 36.484394 | 34 |
| GCGGTCT | 370 | 0.0 | 36.482616 | 36 |
| ACGTCAT | 435 | 0.0 | 36.203056 | 23 |
| AGCCGAT | 445 | 0.0 | 35.3895 | 15 |