FastQCFastQC Report
Mon 6 Jun 2016
ERR1378741.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378741.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences615710
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCGCC552.744855E-936.8171210
CGCGCCC352.819344E-432.1419311
ACCGCGC501.98009E-631.499099
CGCTCTC453.488927E-529.99913232
CACCGCG554.159112E-628.6378638
ATCTTCG406.16098E-428.126475
GCGGTTC802.969684E-622.5011778
GAGCGGT802.969684E-622.5011776
CGTATGC602.4661858E-422.4993544
GACCGCT602.4661858E-422.4993529
GCGCCCG500.002263805122.4993512
AGACCGC602.4661858E-422.4993528
CCGCTCT654.235977E-420.76863331
TATCTCG654.235977E-420.76863339
AACGGGT550.003935151320.45395712
CCTTCGT1009.0222784E-720.2543491
AGCGGTT908.23731E-620.0010457
CTTCGTT1051.4392535E-619.2914242
TCTTCGT600.00650517618.7509826
AGAGCGG851.2028053E-418.5303825