Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378898.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1208292 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACTTGATCTCGTATGCC | 9105 | 0.7535430177473658 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 5468 | 0.45253961790692976 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 1250 | 0.0 | 35.460815 | 42 |
| CGTATGC | 1250 | 0.0 | 35.27935 | 44 |
| ATCTCGT | 1275 | 0.0 | 34.765507 | 40 |
| TCTCGTA | 1270 | 0.0 | 34.72521 | 41 |
| TCGTATG | 1270 | 0.0 | 34.723774 | 43 |
| AGATCGG | 785 | 0.0 | 34.68089 | 17 |
| CCGAACT | 1285 | 0.0 | 34.668625 | 31 |
| CGAACTT | 1300 | 0.0 | 34.61475 | 32 |
| ACCGAAC | 1300 | 0.0 | 34.2686 | 30 |
| GATCGGA | 815 | 0.0 | 33.680363 | 18 |
| GACCGAA | 1335 | 0.0 | 33.53871 | 29 |
| ATCGGAA | 815 | 0.0 | 33.404293 | 19 |
| AGACCGA | 1340 | 0.0 | 33.07775 | 28 |
| GTATGCC | 1335 | 0.0 | 32.864567 | 45 |
| CGAGATC | 840 | 0.0 | 32.67797 | 15 |
| TCGGAAG | 835 | 0.0 | 32.60419 | 20 |
| GAGACCG | 1365 | 0.0 | 32.471928 | 27 |
| GAGATCG | 865 | 0.0 | 31.47341 | 16 |
| GATCTCG | 1415 | 0.0 | 31.00778 | 39 |
| CGAGACC | 1450 | 0.0 | 30.102896 | 26 |