Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378897.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1168948 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGCTTATCTCGTATGCC | 8856 | 0.7576042732439767 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 5750 | 0.49189527677877887 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATCTCGT | 1205 | 0.0 | 37.343758 | 40 |
| TATCTCG | 1205 | 0.0 | 37.343758 | 39 |
| CTCGTAT | 1210 | 0.0 | 37.189445 | 42 |
| TCTCGTA | 1220 | 0.0 | 36.884613 | 41 |
| GACCGTA | 1245 | 0.0 | 36.505398 | 29 |
| CCGTAGC | 1245 | 0.0 | 36.505398 | 31 |
| CGTATGC | 1235 | 0.0 | 36.436623 | 44 |
| TCGTATG | 1235 | 0.0 | 36.436623 | 43 |
| CGTAGCT | 1255 | 0.0 | 36.3938 | 32 |
| GAGACCG | 1275 | 0.0 | 35.64645 | 27 |
| AGACCGT | 1275 | 0.0 | 35.64645 | 28 |
| ACCGTAG | 1275 | 0.0 | 35.64645 | 30 |
| GTATGCC | 1250 | 0.0 | 35.63939 | 45 |
| AGATCGG | 720 | 0.0 | 33.74942 | 17 |
| CGAGACC | 1370 | 0.0 | 33.33885 | 26 |
| GCTTATC | 1375 | 0.0 | 33.217613 | 36 |
| GATCGGA | 750 | 0.0 | 32.399445 | 18 |
| TAGCTTA | 1425 | 0.0 | 32.367867 | 34 |
| GTAGCTT | 1415 | 0.0 | 32.11959 | 33 |
| AGCTTAT | 1465 | 0.0 | 31.33052 | 35 |