Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378619.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 826164 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2978 | 0.36046111909983974 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2357 | 0.28529444517069247 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 260 | 0.0 | 41.536896 | 13 |
| GCGGTCT | 360 | 0.0 | 41.248447 | 36 |
| AATTCGG | 360 | 0.0 | 41.248447 | 20 |
| TCGGTAT | 360 | 0.0 | 41.248447 | 23 |
| AGGCGGT | 365 | 0.0 | 40.683403 | 34 |
| GGCGGTC | 365 | 0.0 | 40.683403 | 35 |
| ATTCGGT | 370 | 0.0 | 40.13362 | 21 |
| TTCGGTA | 370 | 0.0 | 40.13362 | 22 |
| CGGTATT | 370 | 0.0 | 40.13362 | 24 |
| GAATTCG | 370 | 0.0 | 40.13362 | 19 |
| CGTCATA | 275 | 0.0 | 40.089397 | 24 |
| AGCCGAT | 270 | 0.0 | 39.998497 | 15 |
| AAGCCGA | 275 | 0.0 | 39.271244 | 14 |
| CGGGGAA | 390 | 0.0 | 39.22929 | 15 |
| CCGATGA | 280 | 0.0 | 38.569977 | 17 |
| CTCGGGG | 310 | 0.0 | 38.466297 | 13 |
| TCGGGGA | 395 | 0.0 | 38.16312 | 14 |
| ATGACGT | 290 | 0.0 | 38.015812 | 20 |
| TATGCCG | 60 | 1.546141E-10 | 37.498585 | 43 |
| TGACGTC | 295 | 0.0 | 37.37147 | 21 |