FastQCFastQC Report
Mon 6 Jun 2016
ERR1378835.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378835.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1167257
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT28960.2481030312947363Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCAATATCTCGTATGCC23440.20081267450098822Illumina Paired End PCR Primer 2 (97% over 36bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCAATATCTCGTATGCCGTC22320.1912175296442857Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3150.039.28025443
ATCGGAA4900.033.51287527
GATCGGA4950.033.17436626
ATGCCGT3800.033.15328644
TCGGAAG5350.031.95543728
TGCCGTC3900.031.72636245
AGATCGG5250.030.85153225
AATGCCG10900.027.0352118
ATGCCGA11500.025.62577419
TGCCGAG11700.025.18772920
CCGAGAT7150.023.91173622
GAATGCC13000.023.0140617
GAGATCG7400.022.1919124
TATCTCG5950.021.92972436
CGAGATC7500.021.89601723
CGGAAGA8150.021.52982729
GGAATGC14400.020.93279816
TCTCGTA5950.020.79364838
GCGGTTC14450.020.7286645
GCCGAGA13900.020.71565621