FastQCFastQC Report
Mon 6 Jun 2016
ERR1379405.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379405.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences602721
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCC15460.2565034236404572Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC1700.044.99944
CTCGTAT1800.042.49905842
AGACCGA1950.040.3837228
GACCGAA1900.040.26226429
TCTCGTA1900.040.26226441
CGAATAC1950.039.229932
TCGTATG2000.038.24915343
GAGACCG2100.037.4991727
AAGAGCG2050.037.322444
GCGGTTC2050.037.3162468
CCGAGAC2050.037.31624625
AGAGCGG2100.036.4338075
ATCTCGT2100.036.42776540
GAGCGGT2100.036.4277656
CGGTTCA2250.034.9992269
AGCGGTT2200.034.7719577
ACCGAAT2250.033.99924530
CCGAATA2300.033.26013631
GTATGCC2400.031.87429245
AATCTCG2400.031.87429239