FastQCFastQC Report
Mon 6 Jun 2016
ERR1378947.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378947.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1168300
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGGCACAATCTCGTATGCC101520.8689548917230163Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC53540.45827270392878544Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT12160.10408285543096808Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA14300.035.56048641
CTCGTAT14350.035.43658442
TCGTATG14700.035.05055643
ACCGGGC15000.034.79953430
CGTATGC14850.034.54499444
ATCTCGT14700.034.43979340
AATCTCG14850.034.24343539
GACCGGG15250.034.22905329
AGACCGG15350.034.0060628
GAGACCG15500.033.6769727
CGGGCAC15500.033.6769732
GTATGCC15250.033.63889745
CCGGGCA16200.032.3606831
AGATCGG7450.031.1069717
CGAGACC17200.031.00249326
GATCGGA7600.030.49301318
GCACAAT17150.030.4369135
TCGGAAG7800.029.999620
ATCGGAA7900.029.3350519
CACAATC17650.029.19349736