Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378933.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1025536 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATAGGATCTCGTATGCC | 9269 | 0.90382005117324 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 4836 | 0.47155828756864704 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1038 | 0.10121536445332002 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 1170 | 0.0 | 37.883877 | 41 |
| CCGAATA | 1205 | 0.0 | 37.343666 | 31 |
| CGAATAG | 1200 | 0.0 | 37.31177 | 32 |
| CTCGTAT | 1190 | 0.0 | 37.247173 | 42 |
| CGTATGC | 1195 | 0.0 | 36.903046 | 44 |
| TCGTATG | 1200 | 0.0 | 36.749283 | 43 |
| ATCTCGT | 1195 | 0.0 | 36.714764 | 40 |
| GTATGCC | 1225 | 0.0 | 35.631958 | 45 |
| GACCGAA | 1260 | 0.0 | 35.535023 | 29 |
| ACCGAAT | 1265 | 0.0 | 35.39457 | 30 |
| AGACCGA | 1265 | 0.0 | 35.39457 | 28 |
| TAGGATC | 1275 | 0.0 | 34.940495 | 36 |
| GGATCTC | 1280 | 0.0 | 34.80401 | 38 |
| GAGACCG | 1295 | 0.0 | 34.748356 | 27 |
| ATAGGAT | 1330 | 0.0 | 33.664757 | 35 |
| GATCTCG | 1360 | 0.0 | 32.425842 | 39 |
| GAATAGG | 1400 | 0.0 | 32.142227 | 33 |
| CGAGACC | 1400 | 0.0 | 32.142227 | 26 |
| AGATCGG | 740 | 0.0 | 31.621004 | 17 |
| AGGATCT | 1445 | 0.0 | 31.14126 | 37 |