Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379110.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1266031 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACTAGATCTCGTATGCC | 2153 | 0.1700590269906503 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGACTAGATCTCGTATGCCGTC | 1986 | 0.15686819675031655 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 240 | 0.0 | 34.684395 | 43 |
| ACACGGG | 30 | 0.005151697 | 29.994944 | 20 |
| AAACGCG | 30 | 0.005153687 | 29.992575 | 9 |
| ATGCCGT | 305 | 0.0 | 27.292637 | 44 |
| TGCCGTC | 345 | 0.0 | 24.128275 | 45 |
| CGGACTA | 435 | 0.0 | 21.726482 | 32 |
| CTCGTAT | 450 | 0.0 | 20.99812 | 42 |
| TCGTATG | 465 | 0.0 | 20.804588 | 43 |
| CGTATGC | 460 | 0.0 | 20.541637 | 44 |
| TCTCGTA | 465 | 0.0 | 20.320759 | 41 |
| CCGGACT | 480 | 0.0 | 19.689627 | 31 |
| CGGAAGA | 550 | 0.0 | 18.840311 | 1 |
| GTACCGC | 60 | 0.006520163 | 18.74536 | 18 |
| ACCGGAC | 505 | 0.0 | 18.710457 | 30 |
| AGACCGG | 505 | 0.0 | 18.710457 | 28 |
| CCGAGAC | 535 | 0.0 | 18.081064 | 25 |
| GGACTAG | 525 | 0.0 | 18.001944 | 33 |
| GACCGGA | 525 | 0.0 | 17.997677 | 29 |
| GTATGCC | 550 | 0.0 | 17.589334 | 45 |
| ATCTCGT | 555 | 0.0 | 17.43087 | 40 |