Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378879.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 855507 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3935 | 0.4599611692247989 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTGTTATCTCGTATGCCGTC | 2356 | 0.2753922527810994 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTGTTATCTCGTATGCC | 1604 | 0.18749116021259907 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 265 | 0.0 | 36.507824 | 43 |
| TGCCGTC | 295 | 0.0 | 33.55784 | 45 |
| ATGCCGT | 300 | 0.0 | 32.248573 | 44 |
| ATCGGAA | 630 | 0.0 | 31.778738 | 27 |
| TCGGAAG | 650 | 0.0 | 31.496769 | 28 |
| GATCGGA | 645 | 0.0 | 31.388458 | 26 |
| AGATCGG | 655 | 0.0 | 30.909245 | 25 |
| GAGATCG | 745 | 0.0 | 27.47719 | 24 |
| CGAGATC | 740 | 0.0 | 27.358856 | 23 |
| CCGAGAT | 780 | 0.0 | 26.244238 | 22 |
| AATGCCG | 1170 | 0.0 | 26.148108 | 18 |
| ATGCCGA | 1170 | 0.0 | 26.148108 | 19 |
| TGCCGAG | 1225 | 0.0 | 24.97411 | 20 |
| GCCGAGA | 1305 | 0.0 | 23.615505 | 21 |
| GAATGCC | 1315 | 0.0 | 23.264853 | 17 |
| CGGAAGA | 890 | 0.0 | 23.003256 | 29 |
| TCTCGTA | 450 | 0.0 | 21.495283 | 38 |
| CTCGTAT | 460 | 0.0 | 21.031681 | 39 |
| GGAATGC | 1480 | 0.0 | 20.975124 | 16 |
| CGGTTGT | 485 | 0.0 | 20.874147 | 29 |