FastQCFastQC Report
Mon 6 Jun 2016
ERR1379109.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379109.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1105825
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATAGATCTCGTATGCC23360.21124499807835778Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATAGATCTCGTATGCCGTC21390.19343024438767437Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2750.035.99667443
ATGCCGT3100.031.9325344
TGCCGTC3250.029.7664845
CGGCATA5450.022.70329732
CGTATGC5250.021.85512444
CTCGTAT5350.021.44661542
CGGAAGA5800.021.3651541
TCGTATG5450.021.053143
TCTCGTA5500.020.86170841
GTATGCC5850.019.9981545
ACCGGCA6250.019.7963830
AGACCGG6150.019.75248528
ATCTCGT5750.019.56340840
CCGGCAT6700.018.80338331
GTCCGTG600.00651722118.7465723
GGCATAG6750.018.66409733
GAGACCG6600.018.40572427
ATAGATC6850.018.3916336
CCGAGAC6950.017.47881725
GACCGGC7100.017.4263929