Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379393.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 673168 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCC | 1571 | 0.23337413543127422 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACCGAGT | 200 | 0.0 | 42.74915 | 30 |
| CGAGTGT | 195 | 0.0 | 41.53764 | 32 |
| TCTCGTA | 195 | 0.0 | 41.53764 | 41 |
| AGACCGA | 210 | 0.0 | 39.64207 | 28 |
| CGTATGC | 205 | 0.0 | 39.511414 | 44 |
| CTCGTAT | 205 | 0.0 | 39.511414 | 42 |
| GACCGAG | 230 | 0.0 | 36.19494 | 29 |
| AATGCCG | 225 | 0.0 | 35.999287 | 21 |
| TCGTATG | 225 | 0.0 | 35.999287 | 43 |
| GAGACCG | 235 | 0.0 | 35.42483 | 27 |
| ATCTCGT | 230 | 0.0 | 35.216694 | 40 |
| CCGAGAC | 225 | 0.0 | 34.999306 | 25 |
| AGCGGTT | 240 | 0.0 | 34.686813 | 7 |
| ATGCCGA | 240 | 0.0 | 34.686813 | 22 |
| CGGAAGA | 235 | 0.0 | 34.472523 | 1 |
| CCGAGTG | 235 | 0.0 | 34.467403 | 31 |
| GAGCGGT | 250 | 0.0 | 33.304287 | 6 |
| AGAGCGG | 250 | 0.0 | 33.304287 | 5 |
| GCGGTTC | 250 | 0.0 | 33.29934 | 8 |
| TGCCGAG | 250 | 0.0 | 32.39936 | 23 |