FastQCFastQC Report
Mon 6 Jun 2016
ERR1390760.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390760.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences346695
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGAG552.746674E-936.80673631
ATCCGCC250.002108298235.98880830
CGTATGC606.4246706E-933.73950644
AGACCGT708.1308826E-1032.13286628
ATCTCGT651.4018951E-831.14416140
CTCGTAT651.4018951E-831.14416142
GATCCGC300.005150183629.99067129
CCGCCCG300.005150183629.99067132
CATCTCG702.8827344E-828.91957939
TCTCGTA702.8827344E-828.91957941
ACCGTGA702.8827344E-828.91957930
TCGTATG755.6323188E-826.99160443
GACCGTG801.05252184E-725.3046329
GAGACCG801.05252184E-725.3046327
CGTGAGA851.8913852E-723.81612232
AAGCGCT602.4295719E-422.5450346
AAAGCGC500.002235311822.5450345
AGAGCGG955.403763E-721.3584545
GTATGCC1109.966425E-820.44818745
GAGCGGT1008.845982E-720.2905316