FastQCFastQC Report
Mon 6 Jun 2016
ERR1379045.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379045.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1697502
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGATA754.7293724E-1132.999230
CCGATAA801.0004442E-1030.9358431
CTCGTAT1004.5474735E-1126.99855242
GACCGAT957.421477E-1026.05229
CGTATGC1257.530616E-1021.5988444
CGGTTCA1156.7793735E-921.5205849
TCTCGTA1156.7793735E-921.52058441
AAGAGCG1301.2259989E-920.7736234
TCGTATG1201.10685505E-820.62389243
CGATAAT1201.10685505E-820.62389232
GAGCGGT1452.1827873E-1020.1760866
TATCTCG1351.9681465E-919.99892639
GCGGTTC1251.769331E-819.7995198
AGACCGA1302.775414E-819.03828
TGCCGAG1302.7763235E-819.0374423
CCGAGAC1354.2769898E-818.33288825
CGGAAGA1253.820296E-718.0069891
ATGCCGA1406.485425E-817.67762222
CCTTCGT2300.017.6155341
AGAGCGG1551.0881195E-817.4230385