FastQCFastQC Report
Mon 6 Jun 2016
ERR1379378.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379378.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences586477
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCAGTATCTCGTATGCC20900.3563652112529562Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAG3200.040.07668329
CGTATGC3150.039.284344
AGACCGA3300.038.86223628
CTCGTAT3200.038.67048342
ACCGAGC3350.038.28220430
TCTCGTA3250.038.07555441
TCGTATG3250.038.07555443
CGGTTCA3500.037.284379
CCGAGAC3450.037.17257725
TATCTCG3350.036.9389739
GTATGCC3350.036.9389745
GAGACCG3550.036.7592427
CGGAAGA3500.036.6540371
GAGCGGT3600.036.2579736
AGCGGTT3600.036.2486957
AAGAGCG3800.036.1263664
CCGAGCA3550.036.12545831
ATCTCGT3500.035.99870340
GCGTATG250.002106641435.99870321
AGAGCGG3750.035.4077845