FastQCFastQC Report
Mon 6 Jun 2016
ERR1379141.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379141.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1394490
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATGAAATCTCGTATGCCGTC38060.27293132256237046Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATGAAATCTCGTATGCC28890.20717251468278727Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4300.039.23914743
ATGCCGT4950.033.63204644
TGCCGTC5100.032.6428745
CGTATGA6800.025.4719329
CCGTATG6900.025.10277628
ACCGTAT6950.024.59763127
TCGTATG6900.024.45426240
CGTATGC6900.024.45338641
GACCGTA7000.024.42193426
CTCGTAT7100.024.08228139
TCTCGTA7150.023.91044238
AGACCGT7350.023.5658725
ATCTCGT7300.023.42249337
GTATGCC7350.022.95623842
GAGACCG7950.021.5043624
AATCTCG8050.021.24027336
GTATGAA8900.020.21994830
CGGTTCA10600.019.1232686
GCGGTTC10800.018.7698085
AGAGCGG11000.018.6420022