Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378802.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 865061 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGATTATCTCGTATGCCGTC | 2143 | 0.2477281948903025 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGATTATCTCGTATGCC | 1944 | 0.224724036802029 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 285 | 0.0 | 40.258656 | 43 |
| TGCCGTC | 305 | 0.0 | 38.35637 | 45 |
| ATGCCGT | 325 | 0.0 | 35.30375 | 44 |
| GGCGGAT | 30 | 0.005149375 | 29.996649 | 23 |
| TAATCGG | 45 | 0.0012271086 | 24.997206 | 20 |
| CCGTCGA | 515 | 0.0 | 22.279062 | 28 |
| CGTCGAT | 515 | 0.0 | 22.279062 | 29 |
| GTCGATT | 520 | 0.0 | 22.064842 | 30 |
| CTCGTAT | 520 | 0.0 | 22.064842 | 39 |
| GACCGTC | 535 | 0.0 | 21.866714 | 26 |
| ACCGTCG | 525 | 0.0 | 21.8547 | 27 |
| CGGAAGA | 485 | 0.0 | 21.821867 | 1 |
| TATCTCG | 530 | 0.0 | 21.648525 | 36 |
| TCTCGTA | 530 | 0.0 | 21.648525 | 38 |
| GAGACCG | 545 | 0.0 | 21.46549 | 24 |
| TCGATTA | 535 | 0.0 | 21.4462 | 31 |
| CGTATGC | 540 | 0.0 | 21.247627 | 41 |
| TCGTATG | 540 | 0.0 | 21.247627 | 40 |
| CGATTAT | 545 | 0.0 | 21.052692 | 32 |
| AATGCCG | 755 | 0.0 | 20.858597 | 18 |