Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379346.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1165877 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACTACTATCTCGTATGCC | 1327 | 0.11381989695310912 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 195 | 0.0 | 40.391697 | 42 |
| TCTCGTA | 195 | 0.0 | 40.389965 | 41 |
| TATCTCG | 205 | 0.0 | 38.418076 | 39 |
| CGTATGC | 210 | 0.0 | 37.501755 | 44 |
| TCGTATG | 210 | 0.0 | 37.501755 | 43 |
| GACCGAC | 210 | 0.0 | 37.498535 | 29 |
| ACCGACT | 210 | 0.0 | 37.498535 | 30 |
| CCGACTA | 210 | 0.0 | 37.498535 | 31 |
| CGACTAC | 220 | 0.0 | 35.79406 | 32 |
| GAGCGGT | 230 | 0.0 | 35.217525 | 6 |
| GCGGTTC | 230 | 0.0 | 34.23779 | 8 |
| AGCGGTT | 235 | 0.0 | 33.509327 | 7 |
| ATCTCGT | 255 | 0.0 | 30.88512 | 40 |
| CGGTTCA | 265 | 0.0 | 30.564844 | 9 |
| AGACCGA | 270 | 0.0 | 29.998827 | 28 |
| AATGCCG | 265 | 0.0 | 29.71582 | 21 |
| GTATGCC | 275 | 0.0 | 29.45592 | 45 |
| AGAGCGG | 275 | 0.0 | 29.45592 | 5 |
| AAGAGCG | 270 | 0.0 | 29.16803 | 4 |
| CGGAAGA | 285 | 0.0 | 27.63287 | 1 |