Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378834.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1343830 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2505 | 0.18640750690191468 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGTTAATCTCGTATGCCGTC | 1770 | 0.1317130887091373 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGTTAATCTCGTATGCC | 1641 | 0.1221136602099968 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 205 | 0.0 | 34.021633 | 43 |
| TCGGAAG | 370 | 0.0 | 26.145557 | 28 |
| GATCGGA | 345 | 0.0 | 26.082901 | 26 |
| CGTATTG | 45 | 0.0012272422 | 24.997974 | 45 |
| ATGCCGT | 290 | 0.0 | 24.049774 | 44 |
| ATCGGAA | 375 | 0.0 | 23.99627 | 27 |
| TGCCGTC | 295 | 0.0 | 23.642153 | 45 |
| AGATCGG | 395 | 0.0 | 22.78127 | 25 |
| AATGCCG | 770 | 0.0 | 21.620016 | 18 |
| CCGAGAT | 435 | 0.0 | 21.203598 | 22 |
| TGCCGAG | 800 | 0.0 | 21.090471 | 20 |
| ATGCCGA | 820 | 0.0 | 20.850418 | 19 |
| CTCGTAT | 350 | 0.0 | 19.926956 | 39 |
| AGAGCGG | 900 | 0.0 | 19.0204 | 2 |
| TCTCGTA | 380 | 0.0 | 18.944422 | 38 |
| AGCGGTT | 890 | 0.0 | 18.721674 | 4 |
| GAGCGGT | 890 | 0.0 | 18.721674 | 3 |
| TCGTATG | 375 | 0.0 | 18.598492 | 40 |
| ACCGAAG | 375 | 0.0 | 18.597109 | 27 |
| CCGAAGT | 390 | 0.0 | 18.459356 | 28 |