FastQCFastQC Report
Mon 6 Jun 2016
ERR1379351.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379351.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1092235
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTCTATCTCGTATGCC12630.11563445595499137Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT1600.039.3745642
CGTATGC1650.036.81777244
GACCGTA1650.036.81777229
TATCTCG1750.035.999639
TCGTATG1750.034.71389843
CCGTAGT1800.033.74962231
TCTCGTA1900.033.15752441
ACCGTAG1900.031.97332630
ATCTCGT2050.030.73136340
CGTAGTC2000.030.3746632
GAGACCG2100.028.92824727
AGACCGT2100.028.92824728
CGGAAGA2250.028.002251
CGGTTCA2300.027.3909999
GTATGCC2250.026.99969745
GAGCGGT2300.026.4139586
AGCGGTT2400.026.2497087
GCGGTTC2350.025.8507758
AGAGCGG2500.025.2020265
CCGAGAC2650.022.9242725