FastQCFastQC Report
Mon 6 Jun 2016
ERR1379068.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379068.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences784642
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGAATA750.038.9981832
CGTATGC751.8189894E-1235.99831844
CTCGTAT751.8189894E-1235.99831842
AGCGGTT900.034.9983637
ACCGGAA850.034.41015630
TCTCGTA855.456968E-1231.76322241
AGACCGG801.0004442E-1030.93605428
ATCTCGT950.030.78803440
GAGCGGT901.2732926E-1130.0043336
TCGTCAA300.005147449729.998615
TCGTATG901.2732926E-1129.99859843
AGAGCGG952.3646862E-1128.4287835
GACCGGA903.947207E-1027.49871429
GAGACCG903.947207E-1027.49871427
CGGAAGA1004.5474735E-1127.012511
GCGGTTC1004.5474735E-1126.9987378
CCGGAAT1004.5474735E-1126.99873731
CCGAGAC1001.3442332E-924.74884225
ATGCCGA1101.5097612E-1024.54430622
CGGTTCA1152.6557245E-1023.4771659