Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378874.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 724733 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3231 | 0.44581935692179053 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCAGTTATCTCGTATGCC | 2561 | 0.35337151751058665 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCAGTTATCTCGTATGCCGTC | 2363 | 0.3260511112368279 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 275 | 0.0 | 36.814228 | 43 |
| TGCCGTC | 285 | 0.0 | 35.522503 | 45 |
| ATGCCGT | 295 | 0.0 | 34.31835 | 44 |
| ATCGGAA | 465 | 0.0 | 31.92765 | 27 |
| GATCGGA | 495 | 0.0 | 29.992641 | 26 |
| TCGGAAG | 505 | 0.0 | 29.846224 | 28 |
| AGATCGG | 510 | 0.0 | 29.55361 | 25 |
| CCGAGAT | 550 | 0.0 | 27.404259 | 22 |
| CGAGATC | 565 | 0.0 | 26.67671 | 23 |
| TCGTATG | 595 | 0.0 | 24.199081 | 43 |
| GAGATCG | 615 | 0.0 | 24.142084 | 24 |
| CGTATGC | 580 | 0.0 | 24.049143 | 44 |
| TATCTCG | 590 | 0.0 | 24.022846 | 39 |
| AATGCCG | 1060 | 0.0 | 23.979963 | 18 |
| TCTCGTA | 595 | 0.0 | 23.82097 | 41 |
| GACCGTC | 595 | 0.0 | 23.819328 | 29 |
| CGTCAGT | 595 | 0.0 | 23.446096 | 32 |
| TGCCGAG | 1075 | 0.0 | 23.437725 | 20 |
| CTCGTAT | 605 | 0.0 | 23.427237 | 42 |
| CCGTCAG | 610 | 0.0 | 23.238419 | 31 |