Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378831.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 663737 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2975 | 0.44821970147814566 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTAATAATCTCGTATGCC | 2890 | 0.43541342429305585 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTAATAATCTCGTATGCCGTC | 2269 | 0.3418522697996345 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 315 | 0.0 | 36.42247 | 43 |
| ATGCCGT | 315 | 0.0 | 36.42247 | 44 |
| ATCGGAA | 475 | 0.0 | 32.678738 | 27 |
| TCGGAAG | 500 | 0.0 | 32.394577 | 28 |
| AGATCGG | 490 | 0.0 | 31.219261 | 25 |
| GATCGGA | 490 | 0.0 | 31.219261 | 26 |
| TGCCGTC | 370 | 0.0 | 30.400314 | 45 |
| CGAGATC | 595 | 0.0 | 26.08807 | 23 |
| CCGAGAT | 615 | 0.0 | 24.873882 | 22 |
| GAGATCG | 625 | 0.0 | 24.475903 | 24 |
| CGTATGC | 625 | 0.0 | 24.115963 | 44 |
| TCGTATG | 625 | 0.0 | 24.115963 | 43 |
| AATGCCG | 1135 | 0.0 | 23.982769 | 18 |
| CTCGTAT | 635 | 0.0 | 23.736183 | 42 |
| ACCGGTA | 630 | 0.0 | 23.567482 | 30 |
| CCGGTAA | 635 | 0.0 | 23.383673 | 31 |
| GTATGCC | 645 | 0.0 | 23.36818 | 45 |
| TCTCGTA | 660 | 0.0 | 23.177937 | 41 |
| TGCCGAG | 1200 | 0.0 | 23.058638 | 20 |
| ATCTCGT | 680 | 0.0 | 22.82706 | 40 |