Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378924.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 937179 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCCTAATCTCGTATGCC | 12224 | 1.3043399393285593 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 7689 | 0.8204409189706555 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1588 | 0.1694446845266486 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGATCC | 1595 | 0.0 | 37.099655 | 31 |
| TCTCGTA | 1560 | 0.0 | 36.92439 | 41 |
| CTCGTAT | 1585 | 0.0 | 36.341988 | 42 |
| CGATCCT | 1625 | 0.0 | 36.276276 | 32 |
| ATCTCGT | 1590 | 0.0 | 36.227703 | 40 |
| CGTATGC | 1620 | 0.0 | 35.97158 | 44 |
| ACCGATC | 1640 | 0.0 | 35.944485 | 30 |
| TCGTATG | 1610 | 0.0 | 35.917427 | 43 |
| GACCGAT | 1645 | 0.0 | 35.835228 | 29 |
| GTATGCC | 1640 | 0.0 | 35.670097 | 45 |
| AATCTCG | 1625 | 0.0 | 35.44741 | 39 |
| GAGACCG | 1680 | 0.0 | 35.222588 | 27 |
| GATCCTA | 1680 | 0.0 | 35.08866 | 33 |
| AGACCGA | 1685 | 0.0 | 34.98454 | 28 |
| CCTAATC | 1710 | 0.0 | 33.81519 | 36 |
| AGATCGG | 1125 | 0.0 | 33.799397 | 17 |
| CGAGACC | 1790 | 0.0 | 33.05807 | 26 |
| CCGAGAT | 1190 | 0.0 | 32.520428 | 14 |
| ATCGGAA | 1170 | 0.0 | 32.499424 | 19 |
| CTAATCT | 1780 | 0.0 | 32.3607 | 37 |