FastQCFastQC Report
Mon 6 Jun 2016
ERR1378587.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378587.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences758515
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA23150.30520161104262933No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA18860.24864373150168423No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATGAC2900.041.89458518
GATGACG3000.041.24806619
TAAGCCG2950.041.1845113
TTCGGTA2450.040.4062722
CCGATGA3050.039.83419417
CGGTATT2450.039.48794624
AGCCGAT3100.039.19170815
ATGACGT3100.039.19170820
ACGTCAT3100.039.19170823
CGTCATA3100.039.19170824
AATTCGG2550.038.8217120
GACGTCA3150.038.5696222
GCGGTCT2600.038.07513836
AGGCGGT2600.038.07513834
TGACGTC3200.037.9669721
GCCGATG3200.037.9669716
AAGCCGA3250.037.38286214
GGCGGTC2800.036.9625535
ATTCGGT2700.036.6649521
GAATTCG2700.036.6649519