FastQCFastQC Report
Mon 6 Jun 2016
ERR1378717.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378717.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492758
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG850.034.411343
GACCGTA900.032.4995629
CGTATGC950.030.78905744
CCGTAGT950.030.78905731
AGAGCGG1050.030.0026385
CTCGTAT1001.8189894E-1229.24960542
ACCGTAG1001.8189894E-1229.24960530
GCGGTTC1100.028.6359778
AGCGGTT1200.028.124627
CGGTTCA1150.027.3909329
GAGCGGT1200.026.2523086
TCTCGTA1159.094947E-1225.43443741
AATGCCG1201.6370905E-1124.37467221
GAGACCG1301.8189894E-1224.2304427
CGGAAGA1252.910383E-1123.4020581
TATCTCG1252.910383E-1123.39968339
CGTAGTC1305.0931703E-1122.49969532
AGACCGT1500.022.49969528
AAGAGCG1459.094947E-1221.726054
ATCTCGT1401.364242E-1020.89257640