FastQCFastQC Report
Mon 6 Jun 2016
ERR1378783.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378783.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences849345
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAACCATCTCGTATGCCGTC15640.1841418975798998Illumina Paired End PCR Primer 2 (96% over 32bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAACCATCTCGTATGCC13140.15470745103579817Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2000.033.74743743
TGCCGTC2100.033.21176545
CCGGCTA602.4193287E-729.99772516
ATGCCGT2250.029.99772344
CGGCTAA751.6978975E-623.9981817
ACGCCCG550.003937435320.45299312
GACCGTT3450.020.21585826
ACCGTTA3450.020.21585827
CGTTAAC3500.019.9270629
CCGTTAA3500.019.9270628
GATCGGA1251.7671482E-819.79849826
CGTATGC3500.019.2842541
ATCGGAA1302.7721399E-819.03701827
TCGTATG3550.019.01376240
AGAGCGG5250.018.8645972
GCGGTTC5250.018.8634875
CGGAAGA3350.018.815621
TGCCGAG5300.018.67782820
GAGCGGT5350.018.5119883
CTCGTAT3650.018.49283839