Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378962.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1211410 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 7553 | 0.6234883317786711 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCCGTC | 3968 | 0.3275521912482149 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCC | 3196 | 0.26382479920093116 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 475 | 0.0 | 36.957474 | 43 |
| GATCGGA | 1120 | 0.0 | 34.951927 | 26 |
| ATCGGAA | 1115 | 0.0 | 34.906887 | 27 |
| AGATCGG | 1135 | 0.0 | 34.490005 | 25 |
| TCGGAAG | 1170 | 0.0 | 34.22741 | 28 |
| TGCCGTC | 530 | 0.0 | 33.12226 | 45 |
| ATGCCGT | 540 | 0.0 | 32.508884 | 44 |
| CCGAGAT | 1315 | 0.0 | 29.940027 | 22 |
| CGAGATC | 1315 | 0.0 | 29.940027 | 23 |
| GAGATCG | 1315 | 0.0 | 29.768942 | 24 |
| TGCCGAG | 2130 | 0.0 | 27.35647 | 20 |
| ATGCCGA | 2130 | 0.0 | 27.250845 | 19 |
| AATGCCG | 2145 | 0.0 | 27.165165 | 18 |
| CGGAAGA | 1565 | 0.0 | 25.732298 | 29 |
| GCCGAGA | 2275 | 0.0 | 25.118414 | 21 |
| GAATGCC | 2355 | 0.0 | 24.838326 | 17 |
| GGAATGC | 2465 | 0.0 | 24.095 | 16 |
| GAAGAGC | 1810 | 0.0 | 22.62209 | 31 |
| AGGAATG | 2765 | 0.0 | 21.155247 | 15 |
| CGTCGTA | 830 | 0.0 | 21.142504 | 29 |