FastQCFastQC Report
Mon 6 Jun 2016
ERR1379311.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379311.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457148
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC301.1389117E-437.49963444
TATCTCG250.002105884335.9996539
AGAGCGG250.002105884335.999655
CGGTTCA300.00514429829.9997069
GACCGCT300.00514429829.99970629
AGACCGC300.00514429829.99970628
CCTCCGC550.003933189420.45434636
TCGTATG550.003933189420.45434643
TCGTTGG951.3131115E-518.9471844
TTCGTTG1002.0424268E-517.9998253
CGTTGGA1104.6280824E-516.3634765
AACGGGA1004.160505E-415.74984612
TCGCTTG1004.160505E-415.74984615
AATCGCT1004.160505E-415.74984613
GAAACGG1056.027449E-414.99985410
CGCTTGA1056.027449E-414.99985416
AGAATCG1209.732529E-514.99985311
GGTTGCA2001.5650585E-814.62485837
AAACGGG1251.377689E-414.3998611
GAATCGC1108.5750414E-414.31804212