FastQCFastQC Report
Mon 6 Jun 2016
ERR1390774.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390774.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences810565
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA1200.033.7428318
AGATCGG1350.029.99362617
TACACGT300.005151723529.99362615
ATCGGAA1400.028.92242419
TCGGAAG1550.026.12025820
GCGGTTC1650.024.5372128
CGGTTCA1800.023.74202329
CGGAAGA1750.023.13508421
GAGCGGT1750.023.13508426
CCGAGAC1750.023.13508445
AGCGGTT1900.021.3086327
AGAGCGG1950.020.76225525
CCGAGAT2000.020.24569714
CGAGATC2050.019.751915
GAGATCG2200.018.40517816
CGAGACT750.001112343617.99395639
AAGAGCG2250.017.99395424
ATGCCGA2450.017.4431242
CTTCGTT1358.390871E-716.7012482
TCCAACG952.7764763E-416.6112945