FastQCFastQC Report
Mon 6 Jun 2016
ERR1379406.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379406.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1021234
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAAGAATCTCGTATGCC18810.18418893221338106Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC2450.038.57029344
CGTTAAG2450.038.57029332
CTCGTAT2500.037.8007442
CCGTTAA2500.037.79889331
GACCGTT2450.037.6519529
ACCGTTA2500.036.8989230
TCGTATG2600.036.3450943
ATCTCGT2700.035.00068340
AGACCGT2650.034.81029528
TCTCGTA2900.032.58684541
AGAGCGG3300.030.6854255
GAGACCG3050.030.24501427
AAGAGCG3400.029.7829114
AGCGGTT3400.029.1167937
GAGCGGT3500.028.9319736
GCGGTTC3450.028.6948098
AATCTCG3350.028.20950739
GTATGCC3300.027.95372245
CGGTTCA3550.027.8865059
CCGAGAC3350.027.53650325