FastQCFastQC Report
Mon 6 Jun 2016
ERR1379075.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379075.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences954555
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGTCG650.041.53628530
GAGCGGT700.038.577496
CTCGTAT659.094947E-1238.0749342
CCGTCGG751.8189894E-1235.99811631
GACCGTC803.6379788E-1233.7482329
CGTCGGC803.6379788E-1233.7482332
CGGTTCA855.456968E-1231.763049
AGACCGT855.456968E-1231.7630428
GCGGTTC801.0004442E-1030.93758
CGTATGC801.0004442E-1030.93587944
TCGTATG801.0004442E-1030.93587943
AGAGCGG751.6989361E-930.0062875
ACGACCT300.00514814529.9984338
CGGCAAT1001.8189894E-1229.24846635
AGCGGTT852.0372681E-1029.1176477
TCTCGTA852.0372681E-1029.11612141
CGGAAGA903.929017E-1027.511531
GAGACCG903.965397E-1027.4985627
GTCGGCA1004.5474735E-1126.99858533
TCGGCAA1159.094947E-1225.43344934