Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379136.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 729701 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAATATCTCGTATGCC | 3113 | 0.42661309221174154 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAATATCTCGTATGCCGTC | 3025 | 0.4145533581562859 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 400 | 0.0 | 37.68337 | 43 |
| ATGCCGT | 440 | 0.0 | 33.234993 | 44 |
| TGCCGTC | 465 | 0.0 | 31.448164 | 45 |
| CGGTAAC | 30 | 0.005148801 | 29.99671 | 44 |
| CGGAAGA | 545 | 0.0 | 23.56344 | 1 |
| CACTAGG | 60 | 2.470433E-4 | 22.49445 | 18 |
| TCTCGTA | 665 | 0.0 | 22.32532 | 38 |
| TCGTATG | 675 | 0.0 | 21.997587 | 40 |
| CGAGTAA | 690 | 0.0 | 21.843935 | 29 |
| CTCGTAT | 680 | 0.0 | 21.83584 | 39 |
| ACCGAGT | 680 | 0.0 | 21.832848 | 27 |
| CGTATGC | 700 | 0.0 | 21.533352 | 41 |
| GTATGCC | 700 | 0.0 | 21.533352 | 42 |
| CCGAGTA | 695 | 0.0 | 21.3631 | 28 |
| TATCTCG | 715 | 0.0 | 21.081604 | 36 |
| AGACCGA | 755 | 0.0 | 19.664022 | 25 |
| GAGCGGT | 980 | 0.0 | 19.537266 | 3 |
| AGCGGTT | 990 | 0.0 | 19.33992 | 4 |
| GACCGAG | 770 | 0.0 | 19.280956 | 26 |
| AATGCCG | 945 | 0.0 | 19.280956 | 18 |