FastQCFastQC Report
Mon 6 Jun 2016
ERR1378784.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378784.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences746808
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCACAATCTCGTATGCCGTC19400.2597722573941361Illumina Paired End PCR Primer 2 (96% over 33bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCACAATCTCGTATGCC13750.1841169350087305Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2650.039.9026943
TGCCGTC2650.039.9026945
ATGCCGT2800.038.5685644
GATCGGA1450.026.37734826
TCGGAAG1650.024.54362928
CTCGTAT4500.023.49825339
AGATCGG1650.023.18009425
ATCGGAA1650.023.18009427
AATGCCG6150.023.04706818
ATGCCGA6150.023.04706819
TGCCGAG6150.023.04706820
GACCGTT4550.022.7455626
TCTCGTA4650.022.74024438
TCGTATG4650.022.74024440
CGGAAGA4000.022.51341
CGTATGC4700.022.49832541
ACCGTTC4600.022.49832527
ATCTCGT4800.022.49832337
CGGTTCA6850.022.343086
CCGTTCA4650.022.25640928