FastQCFastQC Report
Mon 6 Jun 2016
ERR1378799.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378799.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences989459
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGACCATTATCTCGTATGCCGTC14460.1461404666590531Illumina Paired End PCR Primer 2 (96% over 33bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACCATTATCTCGTATGCC12360.12491674743470926Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1800.036.24678443
ATGCCGT2150.030.34614644
TGCCGTC2250.028.99742945
CGTAGCA406.168732E-428.12250510
CGGAAGA3350.020.161731
CGTATGC3400.019.8511844
ACCGACC3450.019.5634830
CGACCAT3450.019.5634832
CCGACCA3450.019.5634831
GACCGAC3500.019.28400229
TCGTATG3500.019.28400243
CTCGTAT3650.019.10789542
TCTCGTA3550.019.01239841
AGACCGA3550.019.01239828
ATCTCGT3600.018.74833737
CGGCTAA1202.498109E-718.74833717
GTATGCC3700.017.63357242
TATCTCG3900.017.30615639
GAGACCG3950.017.08709124
GCGGTTC5050.016.9386065