Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378890.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1099287 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4784 | 0.43519117391545614 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGACCAAATCTCGTATGCCGTC | 3034 | 0.2759970781060815 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACCAAATCTCGTATGCC | 2785 | 0.2533460324737762 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 400 | 0.0 | 35.435566 | 43 |
| ATGCCGT | 405 | 0.0 | 34.99809 | 44 |
| TGCCGTC | 435 | 0.0 | 32.584427 | 45 |
| GATCGGA | 640 | 0.0 | 31.984621 | 26 |
| ATCGGAA | 640 | 0.0 | 31.984621 | 27 |
| AGATCGG | 675 | 0.0 | 30.659412 | 25 |
| TCGGAAG | 690 | 0.0 | 30.6505 | 28 |
| CCGAGAT | 745 | 0.0 | 27.47672 | 22 |
| AATGCCG | 1300 | 0.0 | 26.820578 | 18 |
| GAGATCG | 780 | 0.0 | 26.243793 | 24 |
| ATGCCGA | 1345 | 0.0 | 26.090483 | 19 |
| TGCCGAG | 1360 | 0.0 | 25.637318 | 20 |
| CGAGATC | 805 | 0.0 | 25.428768 | 23 |
| GCCGAGA | 1435 | 0.0 | 23.983873 | 21 |
| GAATGCC | 1475 | 0.0 | 23.790983 | 17 |
| CTCGTAT | 615 | 0.0 | 23.047522 | 39 |
| CGTATGC | 620 | 0.0 | 22.861656 | 41 |
| GGAATGC | 1565 | 0.0 | 22.566547 | 16 |
| TCGTATG | 630 | 0.0 | 22.498772 | 40 |
| GACCGGA | 650 | 0.0 | 22.148605 | 26 |