FastQCFastQC Report
Mon 6 Jun 2016
ERR1379174.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379174.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491287
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTACTATCTCGTATGCC17640.35905692599234257Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTTAC1950.043.84605832
CCGGTTA1900.043.8156931
ACCGGTT2000.042.749930
GACCGGT1950.042.69221529
GAGACCG1950.042.69221527
AGACCGG1950.042.69221528
CTCGTAT2050.041.70722242
CGTATGC2100.040.71419544
TATCTCG2100.040.71419539
TCGTATG2100.040.71419543
GCGGTTC2150.039.7673538
CGGTTCA2150.039.7673539
TCTCGTA2150.039.76735341
ATCTCGT2200.038.86354440
GAGCGGT2200.038.8635446
AGAGCGG2200.038.8635445
AGCGGTT2250.037.9999127
CGGAAGA2350.036.38661
CCGAGAC2300.036.19556825
CGAGACC2300.036.19556826