FastQCFastQC Report
Mon 6 Jun 2016
ERR1378749.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378749.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences745206
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCGTA453.8380676E-1044.99899331
CGCGTAG501.0804797E-940.49909632
GACCGCG552.746674E-936.8173629
ACCGCGT606.4264896E-933.74924530
AGACCGC606.4264896E-933.74924528
GCGTAGA606.4264896E-933.74924533
GCGGTTC651.4024408E-831.153158
CGTATGC702.8840077E-828.92792144
AGCGGTT702.8840077E-828.9279217
CGTAGAA702.8840077E-828.92792134
TCGTATG702.8840077E-828.92792143
CGGAAGA755.6237695E-827.0048331
CGGTTCA755.6348654E-826.9993959
GAGCGGT801.05161234E-725.3153326
AGAGCGG851.8897481E-723.8261955
CTCGTAT851.8922037E-723.82299842
TCTCGTA851.8922037E-723.82299841
GATTTCG500.002264162322.4994987
CGCCCGG602.4667536E-422.49949613
ATCTCGT955.527527E-721.31531140