Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378923.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1020797 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACTGATATCTCGTATGCC | 8824 | 0.864422603122854 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 5109 | 0.5004912827917793 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1081 | 0.1058976466427703 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATCTCG | 1210 | 0.0 | 37.746742 | 39 |
| CCGACTG | 1230 | 0.0 | 37.498817 | 31 |
| CGACTGA | 1235 | 0.0 | 37.347 | 32 |
| CTCGTAT | 1230 | 0.0 | 37.31955 | 42 |
| CGTATGC | 1250 | 0.0 | 36.72244 | 44 |
| ATCTCGT | 1250 | 0.0 | 36.71884 | 40 |
| GACCGAC | 1260 | 0.0 | 36.605988 | 29 |
| ACCGACT | 1260 | 0.0 | 36.605988 | 30 |
| TCTCGTA | 1265 | 0.0 | 36.4613 | 41 |
| TCGTATG | 1260 | 0.0 | 36.430992 | 43 |
| GTATGCC | 1280 | 0.0 | 36.037548 | 45 |
| AGACCGA | 1290 | 0.0 | 35.754684 | 28 |
| GAGACCG | 1320 | 0.0 | 35.11253 | 27 |
| GACTGAT | 1380 | 0.0 | 33.585896 | 33 |
| AGATCGG | 820 | 0.0 | 32.925793 | 17 |
| ACTGATA | 1515 | 0.0 | 30.890114 | 34 |
| TGATATC | 1505 | 0.0 | 30.796371 | 36 |
| GATCGGA | 885 | 0.0 | 30.761742 | 18 |
| TCGGAAG | 885 | 0.0 | 30.761742 | 20 |
| CGAGACC | 1545 | 0.0 | 30.290306 | 26 |