Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378955.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 967717 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5770 | 0.596248696674751 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGATAATCTCGTATGCCGTC | 2891 | 0.29874436431312046 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGATAATCTCGTATGCC | 1311 | 0.13547349070027703 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 395 | 0.0 | 37.6053 | 43 |
| TCGGAAG | 845 | 0.0 | 35.677402 | 28 |
| ATCGGAA | 850 | 0.0 | 34.673485 | 27 |
| TGCCGTC | 440 | 0.0 | 33.759304 | 45 |
| GATCGGA | 880 | 0.0 | 33.491436 | 26 |
| AGATCGG | 890 | 0.0 | 32.86234 | 25 |
| ATGCCGT | 460 | 0.0 | 32.780773 | 44 |
| CCGAGAT | 970 | 0.0 | 31.543674 | 22 |
| AATGCCG | 1505 | 0.0 | 30.495714 | 18 |
| ATGCCGA | 1510 | 0.0 | 30.394732 | 19 |
| TGCCGAG | 1540 | 0.0 | 29.948719 | 20 |
| GACCGTA | 500 | 0.0 | 29.697443 | 26 |
| CGGAAGA | 1010 | 0.0 | 29.626162 | 29 |
| GAGATCG | 1000 | 0.0 | 29.472462 | 24 |
| CGTAGAT | 505 | 0.0 | 29.403408 | 29 |
| ACCGTAG | 505 | 0.0 | 29.403408 | 27 |
| GCCGAGA | 1560 | 0.0 | 28.987888 | 21 |
| CGAGATC | 1045 | 0.0 | 28.633898 | 23 |
| CCGTAGA | 520 | 0.0 | 28.555231 | 28 |
| CTCGTAT | 515 | 0.0 | 28.398548 | 39 |