Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379007.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 626429 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5289 | 0.8443095705977852 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCTGAATCTCGTATGCCGTC | 2945 | 0.4701251059577382 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCTGAATCTCGTATGCC | 1746 | 0.27872272835389167 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 659 | 0.10519947192738521 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 380 | 0.0 | 34.937435 | 45 |
| ATGCCGT | 385 | 0.0 | 34.4837 | 44 |
| TATGCCG | 400 | 0.0 | 33.190563 | 43 |
| TCGGAAG | 655 | 0.0 | 31.257435 | 28 |
| AGATCGG | 685 | 0.0 | 30.216942 | 25 |
| GATCGGA | 690 | 0.0 | 29.997978 | 26 |
| ATCGGAA | 665 | 0.0 | 29.772429 | 27 |
| CCGAGAT | 730 | 0.0 | 29.278847 | 22 |
| GAGATCG | 755 | 0.0 | 27.415373 | 24 |
| CGAGATC | 765 | 0.0 | 27.351095 | 23 |
| AATGCCG | 1275 | 0.0 | 26.99818 | 18 |
| TGCCGAG | 1300 | 0.0 | 26.65205 | 20 |
| ATGCCGA | 1315 | 0.0 | 26.17694 | 19 |
| GAATGCC | 1370 | 0.0 | 25.126043 | 17 |
| GCCGAGA | 1380 | 0.0 | 24.78094 | 21 |
| CGGAAGA | 835 | 0.0 | 24.249863 | 29 |
| GGAATGC | 1485 | 0.0 | 23.634771 | 16 |
| AGGAATG | 1500 | 0.0 | 23.398422 | 15 |
| CTCGTAT | 570 | 0.0 | 22.895021 | 39 |
| TCTCGTA | 575 | 0.0 | 22.695934 | 38 |