Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378637.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1071504 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4107 | 0.3832930161716615 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2862 | 0.2671011960757963 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGGTAT | 375 | 0.0 | 41.997517 | 23 |
| CGTCATA | 370 | 0.0 | 41.350838 | 24 |
| CGGTATT | 385 | 0.0 | 40.90858 | 24 |
| ACGTCAT | 375 | 0.0 | 40.79759 | 23 |
| TTCGGTA | 385 | 0.0 | 40.322292 | 22 |
| AGCCGAT | 380 | 0.0 | 40.260777 | 15 |
| TAAGCCG | 380 | 0.0 | 40.260777 | 13 |
| GCGGTCT | 405 | 0.0 | 38.888405 | 36 |
| CCGATGA | 395 | 0.0 | 38.73189 | 17 |
| GGCGGTC | 420 | 0.0 | 38.035244 | 35 |
| CTCGGGG | 375 | 0.0 | 37.797764 | 13 |
| GACGTCA | 405 | 0.0 | 37.775543 | 22 |
| AAGCCGA | 405 | 0.0 | 37.775543 | 14 |
| TCGGGGA | 430 | 0.0 | 37.148968 | 14 |
| TGACGTC | 415 | 0.0 | 36.86529 | 21 |
| ATGACGT | 415 | 0.0 | 36.86529 | 20 |
| ATTCGGT | 425 | 0.0 | 36.527252 | 21 |
| AATTCGG | 425 | 0.0 | 36.527252 | 20 |
| AGGCGGT | 435 | 0.0 | 36.206448 | 34 |
| GCCGATG | 425 | 0.0 | 35.99787 | 16 |