Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379162.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 364743 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCATATATCTCGTATGCC | 1049 | 0.2875997620242198 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGCC | 130 | 0.0 | 41.538334 | 29 |
| AGACCGC | 130 | 0.0 | 41.538334 | 28 |
| TCTCGTA | 140 | 0.0 | 40.17845 | 41 |
| ACCGCCA | 135 | 0.0 | 39.999878 | 30 |
| CGCCATA | 135 | 0.0 | 39.999878 | 32 |
| CTCGTAT | 145 | 0.0 | 38.792984 | 42 |
| CGTATGC | 140 | 0.0 | 38.571312 | 44 |
| GAGACCG | 140 | 0.0 | 38.571312 | 27 |
| TATCTCG | 140 | 0.0 | 38.571312 | 39 |
| TCGTATG | 140 | 0.0 | 38.571312 | 43 |
| CCGCCAT | 140 | 0.0 | 38.571312 | 31 |
| GCGGTTC | 150 | 0.0 | 37.499886 | 8 |
| CCGAGAC | 145 | 0.0 | 37.241264 | 25 |
| AAGAGCG | 155 | 0.0 | 36.29021 | 4 |
| CGGTTCA | 155 | 0.0 | 36.29021 | 9 |
| AGCGGTT | 155 | 0.0 | 36.29021 | 7 |
| GAGCGGT | 155 | 0.0 | 36.29021 | 6 |
| AGAGCGG | 155 | 0.0 | 36.29021 | 5 |
| ATCTCGT | 160 | 0.0 | 35.156143 | 40 |
| AATGCCG | 160 | 0.0 | 35.156143 | 21 |