FastQCFastQC Report
Mon 6 Jun 2016
ERR1379171.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379171.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences336978
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGACTATCTCGTATGCC15720.4664992966899917Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACCG900.042.49873727
TCTCGTA1000.040.498841
TCGTATG1000.040.498843
CGTTGAC1100.038.86248432
CCGTTGA1100.038.86248431
CTCGTAT1050.038.57028242
GACCGTT1000.038.24886329
ATCTCGT1100.036.8170940
CGTATGC1100.036.8170944
AGACCGT1050.036.4274928
CGGTTCA1200.035.6239439
TATCTCG1150.035.21634739
GTATGCC1150.035.21634745
GCGGTTC1300.032.8885238
ACCGTTG1300.032.8836430
AGAGCGG1350.031.6704275
GACTATC1300.031.15292236
GAGCGGT1400.030.5393416
GATCGGA453.484307E-529.9991118
TCGGAAG453.484307E-529.9991120