FastQCFastQC Report
Mon 6 Jun 2016
ERR1390626.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390626.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences748033
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATAACG301.14145594E-437.489344
GTCCGAT250.002109590235.98973544
TCGTATG504.8872607E-835.98973543
CTCGTAT501.9848085E-631.49101642
TCTCGTA501.9848085E-631.49101641
CGTATGC554.171634E-628.62819744
CACGTTA406.107115E-428.1697031
CGAGGTA608.204703E-626.24251232
AGACCGA651.52540415E-524.22547728
ATCTCGT651.5261941E-524.22385840
GATCGGA855.040769E-621.17043118
GAGACCG754.607621E-520.99541327
CACGCCC654.2406577E-420.76608511
GTACATC951.3173067E-518.9432336
CGGGTTT600.00651663218.74590514
ATAACGA600.006519147718.7446545
ACCGAGG851.2057442E-418.52536630
CATCTCG851.2057442E-418.52536639
GACCGAG901.8676945E-417.49617829
CCTTCGT1305.680613E-717.3352011