Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378976.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 748547 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6856 | 0.9159077519514472 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCCGTC | 4185 | 0.5590831303845984 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCC | 1293 | 0.17273464458477555 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 914 | 0.1221032213074129 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 575 | 0.0 | 39.52884 | 43 |
| ATGCCGT | 575 | 0.0 | 39.52884 | 44 |
| TGCCGTC | 590 | 0.0 | 38.52387 | 45 |
| CGATACT | 645 | 0.0 | 35.22712 | 29 |
| ACCGATA | 645 | 0.0 | 34.878334 | 27 |
| CCGATAC | 650 | 0.0 | 34.61004 | 28 |
| GACCGAT | 650 | 0.0 | 34.61004 | 26 |
| CGTATGC | 665 | 0.0 | 34.51517 | 41 |
| AGACCGA | 665 | 0.0 | 33.82936 | 25 |
| GATCGGA | 800 | 0.0 | 33.74479 | 26 |
| CTCGTAT | 675 | 0.0 | 33.670464 | 39 |
| TCTCGTA | 685 | 0.0 | 33.17893 | 38 |
| TCGTATG | 685 | 0.0 | 33.17893 | 40 |
| GAGACCG | 685 | 0.0 | 32.841644 | 24 |
| AATGCCG | 1530 | 0.0 | 32.789055 | 18 |
| TCGGAAG | 840 | 0.0 | 32.673527 | 28 |
| ATCTCGT | 705 | 0.0 | 32.556866 | 37 |
| AGATCGG | 835 | 0.0 | 32.330338 | 25 |
| ATGCCGA | 1560 | 0.0 | 32.014286 | 19 |
| GTATGCC | 720 | 0.0 | 31.88073 | 42 |