FastQCFastQC Report
Mon 6 Jun 2016
ERR1379258.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379258.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520909
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTTCG856.4646883E-926.470255
CGTATAA751.6948652E-623.99969310
CTTCGTA903.2802018E-722.4997127
TCGTATA802.969904E-622.4997129
TTCGTAT908.237948E-619.9997438
TCTTCGT1302.7639544E-819.0382186
CCAACGA900.00375057214.9998076
TCCAACG1000.00754437513.4998275
ACTAGAC2358.976713E-913.40408419
CTAGACA3700.012.77010720
CGAACTC1651.04091145E-412.2725718
CGGGGTT1300.00301363712.1175561
TAGACAG3957.2759576E-1211.3922621
TCGAACT1802.3397095E-411.2498567
GCCCAGA2302.0458468E-49.78248421
AGCATTC3704.553476E-89.72960630
TATCTTC4253.919922E-99.5302054
CAGAAGC3258.379191E-68.99988526
GCATTCT3401.4815927E-58.60283131
GGGTTTC3755.5559412E-68.4015051