FastQCFastQC Report
Mon 6 Jun 2016
ERR1378824.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378824.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences670439
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACAACATCTCGTATGCC12630.18838402897206158Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGACAACATCTCGTATGCCGTC10890.16243088483814336Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1100.032.723843
TGCCGTC1150.031.30102745
CTCGTAT2750.028.63332642
ATGCCGT1300.027.6893744
ACCGGAC2850.027.63070930
GACCGGA2850.027.63070929
TCTCGTA2850.027.62864741
CCGGACA2950.026.69407331
TCGTATG3050.026.55456243
GAGACCG3000.026.24917227
AGACCGG3000.026.24917228
CGGACAA3050.025.8188632
CATCTCG3050.025.8188639
CGTATGC3150.024.99734944
ATCTCGT3200.024.60676640
CCGAGAC3350.023.50672325
GGACAAC3400.023.16103633
CGGAAGA3500.023.1576731
CGAGACC3450.022.82536926
GTATGCC3500.022.49761445