FastQCFastQC Report
Mon 6 Jun 2016
ERR1379099.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379099.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1004023
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCCGTC35050.349095588447675Illumina Paired End PCR Primer 2 (96% over 32bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCC32140.32011218866500074Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4300.036.09969743
ATGCCGT4750.032.67972644
TGCCGTC4800.032.3393145
CGTAGCG300.00515291629.99289523
CGATACT6750.023.33013229
CCGATAC6900.023.14784228
TCGTATG6800.022.8277540
ACCGATA6900.022.8206827
CGTATGC6950.022.33506441
CTCGTAT6950.022.33506439
TCTCGTA7100.022.17784538
GTATGCC7200.021.87199842
GACCGAT7400.021.58272626
AGACCGA7550.020.85598825
GAGACCG7700.020.44970124
ATCTCGT7700.020.16057637
CGGAAGA6150.020.1472851
CATCTCG7900.019.93496536
AATGCCG10250.019.7514218
GATACTC8300.019.24434530