Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378604.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 773356 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3417 | 0.4418404977785134 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2652 | 0.342920983350488 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCATA | 380 | 0.0 | 42.038326 | 24 |
| GCGGTCT | 420 | 0.0 | 41.784576 | 36 |
| AGCCGAT | 385 | 0.0 | 40.907974 | 15 |
| TAAGCCG | 385 | 0.0 | 40.907974 | 13 |
| CCGATGA | 400 | 0.0 | 39.93641 | 17 |
| CGGTATT | 440 | 0.0 | 39.885277 | 24 |
| TCGGTAT | 440 | 0.0 | 39.885277 | 23 |
| TCGGGGA | 445 | 0.0 | 39.437122 | 14 |
| ATTCGGT | 445 | 0.0 | 39.437122 | 21 |
| CGGGGAA | 445 | 0.0 | 39.437122 | 15 |
| GAATTCG | 445 | 0.0 | 39.437122 | 19 |
| GACGTCA | 400 | 0.0 | 39.373924 | 22 |
| ATGACGT | 400 | 0.0 | 39.373924 | 20 |
| AGGCGGT | 450 | 0.0 | 38.998936 | 34 |
| CGGTCTC | 450 | 0.0 | 38.998936 | 37 |
| ACGTCAT | 405 | 0.0 | 38.887825 | 23 |
| GGCGGTC | 455 | 0.0 | 38.570374 | 35 |
| GCCGATG | 420 | 0.0 | 38.034676 | 16 |
| GATGACG | 415 | 0.0 | 37.95077 | 19 |
| TTCCTCG | 375 | 0.0 | 37.79897 | 10 |