FastQCFastQC Report
Mon 6 Jun 2016
ERR1379202.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379202.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474607
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGCTTATCTCGTATGCC11460.24146293670341987Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCAACG207.030311E-444.9984211
CGTATGC1200.044.99841744
CCGATGC1250.043.19848331
CTCGTAT1350.039.99859642
GACCGAT1350.039.99859629
GAGACCG1450.038.7917427
TATCTCG1400.038.57007639
TCTCGTA1400.038.57007641
TCGTATG1400.038.57007643
AGACCGA1450.037.2400728
ATCTCGT1500.035.99873440
ACCGATG1500.035.99873430
CGATGCT1500.035.99873432
CGGAAGA1450.035.6959231
GCGGTTC1600.033.7523738
CCGAGAC1600.033.74881725
AGAGCGG1650.032.733025
AGCGGTT1650.032.7295727
ATGCCGA1650.032.72612422
AAGAGCG1700.031.7702854