FastQCFastQC Report
Mon 6 Jun 2016
ERR1379106.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379106.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1236384
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGACATCTCGTATGCCGTC30990.25065028340709683Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGACATCTCGTATGCC28440.23002562310738411Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4800.034.6813943
ATGCCGT5300.031.83401344
TGCCGTC5300.031.83401345
CGATTAA300.00514980729.9971438
CGGAAGA5550.026.7953931
CTCGTAT7200.022.80848339
TCGTATG7600.022.20003540
TCTCGTA7450.022.04220438
CGTATGC7650.021.7608741
ATCTCGT7650.021.46767237
GTATGCC8100.020.82966242
AGACCGG8050.020.40013125
GACCGGA8100.020.27256626
CGGTTCA9300.020.099876
ACCGGAT8300.020.05508627
GAGCGGT9550.019.577663
GCGGTTC9650.019.370865
GAGACCG8500.019.32012624
AGCGGTT9700.019.2749124
CCGGATG8650.019.24594128