Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379097.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 2034642 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTATCATCTCGTATGCCGTC | 3985 | 0.19585755135301444 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTATCATCTCGTATGCC | 3229 | 0.1587011375957048 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 485 | 0.0 | 36.182106 | 43 |
| TGCCGTC | 505 | 0.0 | 35.194656 | 45 |
| ATGCCGT | 510 | 0.0 | 34.84961 | 44 |
| CGGAAGA | 825 | 0.0 | 21.303682 | 1 |
| CTCGTAT | 885 | 0.0 | 20.33754 | 39 |
| CCGTGTA | 865 | 0.0 | 20.288574 | 31 |
| TCTCGTA | 885 | 0.0 | 20.080853 | 38 |
| CGTATGC | 885 | 0.0 | 19.828613 | 41 |
| TCGTATG | 910 | 0.0 | 19.284346 | 40 |
| CGTGTAT | 910 | 0.0 | 19.038046 | 32 |
| AGACCGT | 940 | 0.0 | 18.667053 | 28 |
| ATCTCGT | 955 | 0.0 | 18.376108 | 37 |
| GACCGTG | 960 | 0.0 | 18.278154 | 29 |
| GAGACCG | 985 | 0.0 | 18.042187 | 24 |
| AGCGGTT | 1215 | 0.0 | 17.978922 | 4 |
| GTATGCC | 995 | 0.0 | 17.636505 | 42 |
| ACCGTGT | 995 | 0.0 | 17.635204 | 30 |
| GAGCGGT | 1240 | 0.0 | 17.616444 | 3 |
| CGGTTCA | 1240 | 0.0 | 17.61341 | 6 |
| AATGCCG | 1215 | 0.0 | 17.588318 | 18 |