FastQCFastQC Report
Mon 6 Jun 2016
ERR1390690.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390690.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences894813
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACCGA300.00510474830.0502031
AGATCGG702.7069289E-522.4948317
GATCGGA754.609322E-520.99517418
ATCGGAA807.5739685E-519.68297819
GCGGTTC951.317908E-518.94301428
CCGAGAC851.2067018E-418.5241245
ACGCCCG750.001112091517.9948612
CCTTCGT1305.678703E-717.3366551
TCGGAAG952.8246272E-416.57421120
AGCGGTT1004.173042E-415.74638227
CGGCTAA1301.10825495E-515.57334417
GAGCGGT1056.048102E-414.99571526
GCCCGGC2001.5763362E-814.6216414
CGCCCGG1108.600667E-414.31489213
CGGTTCA1150.001203498913.69250629
AGAGCGG1200.001659473413.12125125
CCGGCTA1555.819516E-513.06151516
ACGGGAT1250.00225473112.59710413
CTTCGTT1454.77886E-412.43456652
CCCGGCT1651.04463856E-412.26990815