FastQCFastQC Report
Mon 6 Jun 2016
ERR1379275.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379275.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences729067
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATAA801.0527765E-725.31226710
TCGTATA851.89184E-723.823319
TTCGTAT903.2838216E-722.4997948
CGCTCCA855.0284416E-621.1762779
ACGCCCG550.00393538820.45435712
CTTCGTA1009.04638E-720.2498157
CACGCCC1253.8288272E-717.99983411
ATCTTCG1153.445466E-617.6085345
ACCACGC1459.6541044E-817.068819
CCACGCC1602.958932E-715.46860810
ACGCCCA950.005373844414.21039712
TCTTCGT1453.101561E-513.9653896
CACCACG2002.486031E-713.4998778
CGCCACC1504.2666805E-513.4998765
TCTCGAT1250.002250306512.59988427
ACGGGGT1350.00400290411.6673592
CTCGATC1400.005253372711.24989728
GGTCTCG3002.6790622E-710.49990425
GCCACCA5150.010.485346
CTCGTGA1954.9101165E-410.38452142