FastQCFastQC Report
Mon 6 Jun 2016
ERR1379225.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379225.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences728183
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC403.4532968E-739.37878444
TCTCGTA403.4570076E-739.3733841
GAGACCG501.9809377E-631.49870127
AGAGCGG554.1590665E-628.6391165
GCGGTTC554.1635158E-628.6351838
GAGCGGT554.1635158E-628.6351836
CTCGTAT608.188777E-626.24891942
AGCGGTT608.188777E-626.2489197
CGAGGTA608.188777E-626.24891932
TCGTATG608.188777E-626.24891943
ACCGAGG651.523241E-524.2297730
AATGCCG651.523241E-524.2297721
AGACCGA651.523241E-524.2297728
ACCGCGC602.4669917E-422.4990739
CACCGCG602.4669917E-422.4990738
GACCGAG754.6011173E-520.99913629
ATGCCGA754.6011173E-520.99913622
TGCCGAG754.6011173E-520.99913623
ATGCCCG550.00393611320.45370312
AAGAGCG807.540602E-519.693454