Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379182.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 329846 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTACGTATCTCGTATGCC | 1721 | 0.5217586388799622 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GTTACGT | 150 | 0.0 | 43.498978 | 33 |
| CCGTTAC | 150 | 0.0 | 43.498978 | 31 |
| CGTATGC | 155 | 0.0 | 42.095783 | 44 |
| CGTATCT | 155 | 0.0 | 42.095783 | 37 |
| CGTTACG | 155 | 0.0 | 42.095783 | 32 |
| AGACCGT | 155 | 0.0 | 42.095783 | 28 |
| TCGTATG | 160 | 0.0 | 40.78029 | 43 |
| ACCGTTA | 160 | 0.0 | 40.78029 | 30 |
| ACGTATC | 160 | 0.0 | 40.78029 | 36 |
| CTCGTAT | 165 | 0.0 | 39.54452 | 42 |
| GACCGTT | 165 | 0.0 | 39.54452 | 29 |
| TATCTCG | 165 | 0.0 | 39.54452 | 39 |
| GAGCGGT | 175 | 0.0 | 38.57052 | 6 |
| ATCTCGT | 170 | 0.0 | 38.381447 | 40 |
| ATGCCGA | 170 | 0.0 | 38.381447 | 22 |
| TACGTAT | 170 | 0.0 | 38.381447 | 35 |
| AGAGCGG | 180 | 0.0 | 37.5048 | 5 |
| GCGGTTC | 175 | 0.0 | 37.284832 | 8 |
| GAGACCG | 175 | 0.0 | 37.284832 | 27 |
| GTATGCC | 175 | 0.0 | 37.284832 | 45 |