FastQCFastQC Report
Mon 6 Jun 2016
ERR1379191.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379191.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511130
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCATGATCTCGTATGCC13040.25512100639758967Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC1650.042.27208744
CTCGTAT1650.042.27208742
GACCGTT1750.041.1422329
AGACCGT1800.039.9993928
ACCGTTC1800.039.9993930
CGTTCAT1750.039.85653732
GAGACCG1750.039.85653727
CCGAGAC1750.039.85653725
AATGCCG1700.039.70527621
TCGTATG1800.038.7494143
ATGCCGA1750.038.57084322
GCGGTTC1900.037.894168
GAGCGGT1900.037.894166
TCTCGTA1900.036.7099741
TGCCGAG1900.036.7099723
CGGAAGA2000.036.0064961
AGAGCGG2000.036.0029755
GTATGCC1950.035.76868445
CCGTTCA1950.035.76868431
CGGTTCA2050.035.1214189