FastQCFastQC Report
Mon 6 Jun 2016
ERR1378885.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378885.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences935632
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT30200.32277647622142036Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGGAACATCTCGTATGCC17960.19195581168664602Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGGAACATCTCGTATGCCGTC17150.18329856182772714Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATCGT250.002095644436.039341
TATGCCG2700.034.16743543
ATGCCGT3100.029.75873644
AGATCGG3900.028.8406425
TCGGAAG4100.028.53265428
GATCGGA3900.028.26382626
ATCGGAA4050.027.21701827
TGCCGTC3400.027.13296745
AATGCCG8550.024.46900618
TGCCGAG8650.024.44619220
CCGAGAT4750.024.15327622
ATGCCGA8850.023.63954719
CTCGTAT4050.022.77829439
CGTATGC4150.022.22941641
CGAGATC5200.022.0630923
GCCGAGA9300.022.01191921
TCTCGTA4250.021.7017338
GAATGCC9750.021.6881617
CGTGGAA4400.021.47431429
TCGTATG4300.021.45397240