FastQCFastQC Report
Mon 6 Jun 2016
ERR1390728.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390728.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences568115
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCGCC352.8199845E-432.14015210
CGTATGC501.984672E-631.48903544
TCTCGTA501.984672E-631.48903541
ACCGCGC300.00514720929.9974779
GATCGGA852.0372681E-1029.10751218
CTCGTAT554.1713556E-628.62639442
GCGCCCG554.1713556E-628.62639412
TCGTATG554.1713556E-628.62639443
GACCGGC608.198564E-626.24317229
AGACCGG608.198564E-626.24317228
CCTTCGT901.1650627E-825.0464061
CGGCACA651.5250584E-524.22446632
ATCGGAA1052.3701432E-923.56322319
CGCTCCA500.002264316422.4981089
ATCTCGT754.6097237E-520.9926940
TCGGAAG1251.7696948E-819.79310620
CGTGAGC807.447457E-519.7240451
GAGACCG807.5695265E-519.68237727
GTATGCC807.57465E-519.68064545
CGCCCGG706.9938897E-419.27900113