FastQCFastQC Report
Mon 6 Jun 2016
ERR1378639.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378639.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences695108
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA22770.32757499554026137No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA16180.23276958400708955No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG2000.041.62060513
GCGGTCT2400.040.3082536
GATGACG2050.039.50802619
TTCGGTA2450.039.4856322
TCGGTAT2450.039.4856323
CGGGGAA2500.038.69591515
CGTCATA2100.038.5673624
AATTCGG2550.037.93717620
ATGACGT2150.037.67044420
CGGTATT2600.037.20761524
AGCCGAT2250.036.99609815
TCGGGGA2650.036.5055814
GAATTCG2650.036.5055819
AAGCCGA2300.036.19183314
CTCGGGG2300.036.19183313
TTCCTCG2350.035.42179510
CGATGAC2300.035.21367618
GGCGGTC2700.034.99630735
CCTCGGG2450.034.89427612
ATTCGGT2800.034.54992721