FastQCFastQC Report
Mon 6 Jun 2016
ERR1390791.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390791.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences853692
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAA903.965397E-1027.48929629
TATCTCG957.4396667E-1026.04249239
CGAAGTA1003.6567144E-822.49124332
ACCGAAG1156.7939254E-921.51336330
CGTATGC1056.128357E-821.4202344
AGATCGG955.5396595E-721.31123717
TCGTATG1201.1092197E-820.61697443
CCGAAGT1101.001772E-720.44658531
TGCCGTC550.00394460420.44658545
AGACCGA1251.7736966E-819.79229428
ATCTCGT1151.6006925E-719.55760440
GATCGGA951.317607E-518.94332118
CTCGTAT1202.5050213E-718.74270242
TCTCGTA1202.5050213E-718.74270241
ACGCCCG1102.263001E-618.40192612
GAGACCG1354.287358E-818.32619927
ACGGGAT901.8680148E-417.49626413
CGCCCGG1305.7912075E-717.30399913
TCGGAAG1053.1213167E-517.13618520
CCGGCTA1358.595198E-716.66310716