Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379219.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 395972 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGGACATATCTCGTATGCC | 1592 | 0.40204862970108995 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACCGGGA | 195 | 0.0 | 41.537296 | 30 |
| GACCGGG | 190 | 0.0 | 41.446205 | 29 |
| CCGGGAC | 185 | 0.0 | 41.35019 | 31 |
| CGGGACA | 185 | 0.0 | 41.35019 | 32 |
| TCTCGTA | 200 | 0.0 | 40.498863 | 41 |
| CGTATGC | 205 | 0.0 | 39.511086 | 44 |
| CTCGTAT | 205 | 0.0 | 39.511086 | 42 |
| GCGGTTC | 205 | 0.0 | 39.511086 | 8 |
| TCGTATG | 205 | 0.0 | 39.511086 | 43 |
| AGACCGG | 200 | 0.0 | 39.373898 | 28 |
| TATCTCG | 210 | 0.0 | 38.570343 | 39 |
| AAGAGCG | 225 | 0.0 | 38.008533 | 4 |
| AGCGGTT | 220 | 0.0 | 37.83985 | 7 |
| GAGCGGT | 220 | 0.0 | 37.83985 | 6 |
| CGGAAGA | 220 | 0.0 | 36.82645 | 1 |
| ATCTCGT | 220 | 0.0 | 36.81715 | 40 |
| CGGTTCA | 220 | 0.0 | 36.81715 | 9 |
| AGAGCGG | 230 | 0.0 | 36.20378 | 5 |
| AATGCCG | 225 | 0.0 | 35.99899 | 21 |
| GAGACCG | 220 | 0.0 | 35.794453 | 27 |