FastQCFastQC Report
Mon 6 Jun 2016
ERR1379027.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379027.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1134957
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCTAT659.094947E-1238.07498635
GCGGTTC653.6743586E-1034.6151478
CCGAGCG653.6743586E-1034.61362531
CGAGCGC653.6743586E-1034.61362532
CTCGTAT651.4042598E-831.1522642
TATCTCG651.4042598E-831.1522639
TCTCGTA651.4042598E-831.1522641
CGCTATC751.7043931E-929.99847236
ACCGAGC803.3978722E-928.12356830
GACCGAG856.4846972E-926.4692429
GAGCGCT856.4846972E-926.4692433
AGCGCTA856.4846972E-926.4692434
CGGTTCA957.421477E-1026.0513069
CGTATGC801.05428626E-725.31121344
GAGCGGT1001.3405952E-924.7563746
AGAGCGG952.1096639E-823.690315
ATGCCGA1104.0545274E-922.49885622
GCTCGCT500.002265262722.49885625
AGCGGTT1056.1081664E-821.4284257
TCGTATG1056.110895E-821.4274843