Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378816.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 572483 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCAGTTATCTCGTATGCCGTC | 1113 | 0.19441625340839816 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCAGTTATCTCGTATGCC | 1048 | 0.1830622044672069 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CATTCCG | 25 | 0.0021072903 | 35.996296 | 30 |
| TATGCCG | 120 | 0.0 | 35.621334 | 43 |
| TGCCGTC | 135 | 0.0 | 31.663406 | 45 |
| ATGCCGT | 155 | 0.0 | 29.02927 | 44 |
| TATCTCG | 215 | 0.0 | 23.020887 | 39 |
| CTCGTAT | 220 | 0.0 | 22.497684 | 42 |
| TCGTATG | 235 | 0.0 | 22.01901 | 43 |
| TCTCGTA | 230 | 0.0 | 21.519524 | 41 |
| CGTCAGT | 230 | 0.0 | 21.519524 | 32 |
| ATCTCGT | 235 | 0.0 | 21.06166 | 40 |
| CCGTCAG | 235 | 0.0 | 21.06166 | 31 |
| GAGACCG | 235 | 0.0 | 21.06166 | 27 |
| ACCGTCA | 235 | 0.0 | 21.06166 | 30 |
| GACCGTC | 250 | 0.0 | 20.69787 | 29 |
| ACGCCCG | 55 | 0.0039365073 | 20.45244 | 12 |
| AGACCGT | 255 | 0.0 | 20.29203 | 28 |
| CGTATGC | 265 | 0.0 | 19.526293 | 44 |
| CGGCTAA | 85 | 1.2040498E-4 | 18.527508 | 17 |
| GTATGCC | 270 | 0.0 | 18.331446 | 45 |
| CGAGACC | 295 | 0.0 | 18.303202 | 26 |