FastQCFastQC Report
Mon 6 Jun 2016
ERR1379279.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379279.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences352317
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT207.0278207E-444.9984366
GCGGTTC250.002105488735.998758
AGAGCGG300.005143344429.9989595
CCGCTGG406.1588397E-428.12402331
TCGTATG406.1588397E-428.12402343
CGAGACC500.002261973722.49921826
CCTCACT600.006503049318.7493544
TGGTCAA1004.1579193E-415.74945329
AGGTTGC1301.1024129E-515.57638336
AGTGAGC2003.6432612E-612.3745743
GAGCCAC1701.3711856E-411.9130434
GAGGTTG1701.3730014E-411.91135235
TCACTTG1902.9347913E-511.84169515
TTGCCAT1850.00369592739.7293928
ATCACTT2555.374571E-59.70554514
CAGCTAC2555.7432166E-48.82322329
CAGTGAG2851.8071974E-48.68390942
GTGAGCC2700.00101373258.33304444
TGAGCCA2700.0093961477.499739645
GGCTGAG4008.9421985E-46.749765442