Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378790.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 633322 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTCAATCTCGTATGCCGTC | 1661 | 0.26226785110891454 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTCAATCTCGTATGCC | 1437 | 0.2268987971363698 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 175 | 0.0 | 39.854416 | 43 |
| ATCCGTA | 25 | 0.0021071038 | 35.997536 | 33 |
| ATGCCGT | 200 | 0.0 | 34.872612 | 44 |
| TGCCGTC | 220 | 0.0 | 31.702377 | 45 |
| CGGAAGA | 320 | 0.0 | 23.214367 | 1 |
| CGTGTTC | 330 | 0.0 | 21.134916 | 29 |
| AGATCGG | 140 | 1.364242E-10 | 20.891428 | 25 |
| TCGGAAG | 140 | 1.364242E-10 | 20.891428 | 28 |
| CGTATGC | 335 | 0.0 | 20.819471 | 41 |
| TCGTATG | 340 | 0.0 | 20.513302 | 40 |
| AATGCCG | 485 | 0.0 | 20.410975 | 18 |
| ATGCCGA | 485 | 0.0 | 20.410975 | 19 |
| ATCGGAA | 145 | 2.1827873E-10 | 20.171034 | 27 |
| GACCGTG | 360 | 0.0 | 19.998632 | 26 |
| AGACCGT | 350 | 0.0 | 19.927208 | 25 |
| CTCGTAT | 340 | 0.0 | 19.851583 | 39 |
| TGCCGAG | 505 | 0.0 | 19.60262 | 20 |
| TCTCGTA | 345 | 0.0 | 19.563879 | 38 |
| GATCGGA | 150 | 3.43789E-10 | 19.498665 | 26 |
| GAGACCG | 360 | 0.0 | 19.373674 | 24 |