FastQCFastQC Report
Mon 6 Jun 2016
ERR1378900.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378900.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences966615
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCACGCATCTCGTATGCC91090.9423607123829033Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC44180.45705891176942215Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT10050.10397107431604102Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCATC11200.036.1603836
CGCATCT11150.036.12074337
CGCCACG11550.036.0386332
GCCACGC11800.035.4657833
CACGCAT11650.035.3430235
TCTCGTA11300.035.04392641
CCACGCA11900.034.78959734
GACCGCC12050.034.5432529
CATCTCG11650.034.18423539
CCGCCAC12250.034.1629531
CTCGTAT11600.034.1376242
ATCTCGT11700.034.0381540
ACCGCCA12250.033.9792830
AGACCGC12250.033.9792828
CGTATGC11850.033.79715744
GTATGCC11950.033.5143445
TCGTATG11950.033.5143443
GAGACCG12450.033.43342627
GCATCTC12600.031.42828438
CGAGACC13750.030.10881426