Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378813.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 923054 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTCTTATCTCGTATGCCGTC | 1589 | 0.17214594162421698 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTCTTATCTCGTATGCC | 1132 | 0.12263637880340694 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 190 | 0.0 | 40.26059 | 45 |
| TATGCCG | 185 | 0.0 | 38.916435 | 43 |
| ATGCCGT | 205 | 0.0 | 37.314693 | 44 |
| CTCGTAT | 280 | 0.0 | 24.909124 | 39 |
| CGTATGC | 295 | 0.0 | 24.405222 | 41 |
| TCTCGTA | 290 | 0.0 | 24.05019 | 38 |
| TCGTATG | 290 | 0.0 | 24.05019 | 40 |
| AGATCGG | 190 | 0.0 | 23.6827 | 25 |
| ATCGGAA | 190 | 0.0 | 23.6827 | 27 |
| CGAGTCT | 305 | 0.0 | 23.605051 | 29 |
| AGACCGA | 305 | 0.0 | 23.605051 | 25 |
| GAGACCG | 310 | 0.0 | 23.224325 | 24 |
| GATCGGA | 195 | 0.0 | 23.07545 | 26 |
| GACCGAG | 315 | 0.0 | 22.855684 | 26 |
| ACCGAGT | 315 | 0.0 | 22.855684 | 27 |
| AATGCCG | 530 | 0.0 | 22.498566 | 18 |
| ATGCCGA | 545 | 0.0 | 22.292156 | 19 |
| TATCTCG | 320 | 0.0 | 21.795485 | 36 |
| TGCCGAG | 550 | 0.0 | 21.680433 | 20 |
| ATCTCGT | 325 | 0.0 | 21.46017 | 37 |