Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379129.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1280640 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACTGATCTCGTATGCCGTC | 3414 | 0.2665854572713643 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACTGATCTCGTATGCC | 2788 | 0.21770364817591203 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 535 | 0.0 | 36.58494 | 43 |
| ATGCCGT | 595 | 0.0 | 32.895702 | 44 |
| TGCCGTC | 625 | 0.0 | 31.316711 | 45 |
| CGTATGC | 795 | 0.0 | 24.620054 | 41 |
| TCGTATG | 800 | 0.0 | 24.466183 | 40 |
| TCTCGTA | 785 | 0.0 | 24.357645 | 38 |
| CTCGTAT | 790 | 0.0 | 24.206318 | 39 |
| CGGAAGA | 635 | 0.0 | 22.711143 | 1 |
| AGACCGA | 865 | 0.0 | 22.625916 | 25 |
| ATCTCGT | 885 | 0.0 | 21.608744 | 37 |
| GTATGCC | 910 | 0.0 | 21.508732 | 42 |
| CGAGACT | 915 | 0.0 | 21.38869 | 29 |
| GACCGAG | 915 | 0.0 | 21.142843 | 26 |
| ACCGAGA | 935 | 0.0 | 20.93118 | 27 |
| GAGACCG | 940 | 0.0 | 20.820654 | 24 |
| AGCGGTT | 1085 | 0.0 | 20.341097 | 4 |
| GAGCGGT | 1075 | 0.0 | 20.320824 | 3 |
| GACTGAT | 955 | 0.0 | 20.260443 | 32 |
| AATGCCG | 1090 | 0.0 | 20.224865 | 18 |
| GCGGTTC | 1080 | 0.0 | 20.223585 | 5 |