FastQCFastQC Report
Mon 6 Jun 2016
ERR1390592.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390592.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences322128
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGGAAG300.00514425229.99710324
CGGCTCA900.003748521414.99855123
TCGGCTC950.00536834714.20915422
ACTAGAC1454.8356949E-412.41259419
CAGCATT1802.3362532E-411.24891430
GTTGGCC1400.0052459811.24891413
TAGACAG2352.1878039E-510.53089822
GTTTCAC1954.8701456E-410.3900633
CTAGACA2201.3039651E-410.22628521
GAAGCAT2201.3039651E-410.22628527
GACAGAA3155.201382E-79.99903524
AGCATTC2504.3247303E-59.89904429
CTGCTGT1850.00369636069.72878913
AGTGCAG2109.622952E-49.6479175
GGAGTGC2352.519597E-49.5794913
ACAGAAG2352.5353866E-49.57354425
ACTGCAA2658.187014E-59.33872129
CTGGAGT2902.1003427E-59.3253691
GAGTGCA2453.8272192E-49.1884924
CAGAAGC2453.8511076E-49.18278726