FastQCFastQC Report
Mon 6 Jun 2016
ERR1378972.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378972.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences851661
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT55810.6553076869787392Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTAGTATCTCGTATGCCGTC27440.32219392457797175Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTAGTATCTCGTATGCC14020.16461949061891998Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC3050.040.57276545
TATGCCG3100.039.19257743
ATGCCGT3100.039.19257744
GTCGGAA301.140234E-437.4968727
ATCGGAA7850.035.82503527
GATCGGA7900.035.59829326
AGATCGG8000.035.4345425
TCGGAAG8300.034.9669628
CGAGATC8900.031.85127323
CCGAGAT8850.031.77700822
GAGATCG9450.030.2355724
CAAGTCG300.00514862129.99749417
AATGCCG14050.029.78398918
ATGCCGA14400.028.90383519
TGCCGAG14800.027.97063620
CGGAAGA10400.027.90632429
GAATGCC15600.026.82468217
GCCGAGA14950.026.78706221
GGAATGC16550.025.69271716
CGTATGC5200.023.7960941