FastQCFastQC Report
Mon 6 Jun 2016
ERR1379166.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379166.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences362656
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATTACATCTCGTATGCC14050.3874194829259684Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC1400.043.3928628
GACCGCA1450.041.8965529
CCGAGAC1450.041.8965525
TCTCGTA1550.040.6451641
GAGACCG1500.040.50000427
CTCGTAT1550.039.19354642
GCGGTTC1550.039.1935468
CGGTTCA1550.039.1935469
AGAGCGG1500.039.0000045
ATCTCGT1600.037.96875440
CGTATGC1600.037.96875444
CGCATTA1600.037.96875432
CATCTCG1600.037.96875439
AGCGGTT1600.037.9687547
GAGCGGT1550.037.7419366
TCGTATG1650.036.8181843
CCGCATT1650.036.8181831
TGCCGAG1650.036.8181823
ACCGCAT1700.035.73529430
ATGCCGA1700.035.73529422