FastQCFastQC Report
Mon 6 Jun 2016
ERR1390787.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390787.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541719
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC8090.14933941766856987Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTACGA352.8231746E-432.1336337
CGTATGC801.0004442E-1030.92861644
CTCGTAT801.0004442E-1030.92861642
CCGATTA801.0004442E-1030.92861631
GATCGGA1500.029.99415418
CGATTAA901.2732926E-1129.99138532
TCTCGTA852.0372681E-1029.10928741
TCGTATG852.0372681E-1029.10928743
ATCGGAA1700.027.78870219
ATCTCGT903.965397E-1027.49210440
AGATCGG1650.027.26741217
TCGGAAG1700.026.46298820
GACCGAT957.421477E-1026.0451529
GTATGCC957.421477E-1026.0451545
ACCGATT1001.3460522E-924.74289330
GTGGCGC702.7036524E-522.49561711
AGTGGCG602.4684268E-422.49561510
CCGAGAC2050.021.94491845
AGACCGA1156.7720975E-921.51555828
GAGATCG2250.020.99590716