FastQCFastQC Report
Mon 6 Jun 2016
ERR1379184.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379184.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470578
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATTGCATCTCGTATGCC17770.3776207132505132Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATTG2250.042.9993932
GACCGTA2250.041.99940529
CCGTATT2250.041.99940531
TCTCGTA2250.041.99940541
AGACCGT2250.041.99940528
CGTATGC2300.041.08637644
CTCGTAT2350.040.21219642
TCGTATG2350.040.21219643
ACCGTAT2350.040.21219630
CATCTCG2400.039.37444339
GAGACCG2400.039.37444327
GCGGTTC2550.037.0582968
AGCGGTT2550.037.0582967
CCGAGAC2500.036.8994825
CGGTTCA2600.036.345649
GTATGCC2600.036.3456445
GAGCGGT2650.035.663666
AGAGCGG2650.035.663665
ATCTCGT2650.035.6598740
GTATTGC2650.035.6598733