FastQCFastQC Report
Mon 6 Jun 2016
ERR1378610.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378610.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569853
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA23750.41677415052653927No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA17530.30762319405179933No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCATA2400.043.12550424
GCCGATG2550.041.46743416
GACGTCA2500.041.39321522
TTCGGTA2250.040.99328622
TAAGCCG2650.039.90262613
TCGGGGA2400.039.37200514
TCGGTAT2350.039.2488923
AGCCGAT2700.039.1636915
GGCGGTC2300.039.13089435
CCGATGA2750.038.45162217
CGGTATT2400.038.4379524
ATTCGGT2400.038.43120621
AAGCCGA2800.037.76498814
CGATGAC2800.037.76498818
ATGACGT2800.037.7616720
GCGGTCT2450.037.65350336
CGGGGAA2450.037.65019615
TGACGTC2750.037.630221
TTCCTCG2350.037.33431210
ACGTCAT2800.036.9582323