FastQCFastQC Report
Mon 6 Jun 2016
ERR1378933.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378933.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1025536
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATAGGATCTCGTATGCC92690.90382005117324Illumina Paired End PCR Primer 2 (97% over 34bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC48360.47155828756864704Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT10380.10121536445332002Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA11700.037.88387741
CCGAATA12050.037.34366631
CGAATAG12000.037.3117732
CTCGTAT11900.037.24717342
CGTATGC11950.036.90304644
TCGTATG12000.036.74928343
ATCTCGT11950.036.71476440
GTATGCC12250.035.63195845
GACCGAA12600.035.53502329
ACCGAAT12650.035.3945730
AGACCGA12650.035.3945728
TAGGATC12750.034.94049536
GGATCTC12800.034.8040138
GAGACCG12950.034.74835627
ATAGGAT13300.033.66475735
GATCTCG13600.032.42584239
GAATAGG14000.032.14222733
CGAGACC14000.032.14222726
AGATCGG7400.031.62100417
AGGATCT14450.031.1412637