FastQCFastQC Report
Mon 6 Jun 2016
ERR1379008.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379008.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences720052
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT63420.8807697221867309Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTGAATCTCGTATGCCGTC31740.44080149766961274Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTGAATCTCGTATGCC17500.2430380028109081Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC8170.11346402759800682Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4850.037.11689843
GATCGGA8450.035.1463626
TCGGAAG8550.034.99843628
ATCGGAA8500.034.93961327
TGCCGTC5250.034.71755245
AGATCGG8600.034.27172525
ATGCCGT5500.033.13948444
CCGAGAT9150.032.94934522
CGAGATC9100.032.88314423
GAGATCG9400.031.59433224
ATGCCGA15700.030.66741819
AATGCCG15800.030.33092118
CCGCTAA300.005147123229.99865711
TGCCGAG16350.029.7234420
GCCGAGA16250.029.49098821
GAATGCC16700.028.83104717
GGAATGC16800.028.5255116
GACCGCA6600.027.27150726
CCGCAGT6600.027.27150728
CGGAAGA11050.027.08023629