Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379016.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1098894 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4721 | 0.42961377530498845 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAATATCTCGTATGCCGTC | 2578 | 0.2345995155128702 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAATATCTCGTATGCC | 1634 | 0.14869496056944528 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 320 | 0.0 | 38.674965 | 43 |
| ATGCCGT | 345 | 0.0 | 35.87243 | 44 |
| GATCGGA | 595 | 0.0 | 32.897297 | 26 |
| TCGGAAG | 595 | 0.0 | 32.897297 | 28 |
| ATCGGAA | 590 | 0.0 | 32.794754 | 27 |
| AGATCGG | 605 | 0.0 | 31.98166 | 25 |
| TGCCGTC | 400 | 0.0 | 30.93997 | 45 |
| TGCCGAG | 1140 | 0.0 | 28.814157 | 20 |
| AATGCCG | 1135 | 0.0 | 28.544638 | 18 |
| ATGCCGA | 1175 | 0.0 | 27.955864 | 19 |
| CGAGATC | 735 | 0.0 | 26.631145 | 23 |
| CGAGTAA | 465 | 0.0 | 26.611397 | 29 |
| CGGAAGA | 745 | 0.0 | 26.27368 | 29 |
| CGTATGC | 465 | 0.0 | 26.12993 | 41 |
| ACCGAGT | 475 | 0.0 | 26.051157 | 27 |
| CCGAGAT | 765 | 0.0 | 25.880888 | 22 |
| TCGTATG | 470 | 0.0 | 25.8496 | 40 |
| GAGATCG | 765 | 0.0 | 25.586786 | 24 |
| CTCGTAT | 485 | 0.0 | 25.514019 | 39 |
| TCTCGTA | 480 | 0.0 | 25.311068 | 38 |