Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379102.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 546536 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGCATATCTCGTATGCC | 2419 | 0.44260579357992885 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGCATATCTCGTATGCCGTC | 2245 | 0.41076891549687483 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 572 | 0.10465916243394763 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 340 | 0.0 | 37.05445 | 43 |
| ATGCCGT | 335 | 0.0 | 36.26438 | 44 |
| TGCCGTC | 340 | 0.0 | 35.73108 | 45 |
| CGTGTCG | 30 | 0.00514789 | 29.996466 | 28 |
| CGGAAGA | 405 | 0.0 | 27.24893 | 1 |
| GAAGAGC | 475 | 0.0 | 23.226915 | 3 |
| ACCGGAG | 565 | 0.0 | 22.298256 | 27 |
| TCGTATG | 560 | 0.0 | 22.095608 | 40 |
| CGTATGC | 565 | 0.0 | 21.900074 | 41 |
| CCGGAGC | 580 | 0.0 | 21.721575 | 28 |
| TCTCGTA | 570 | 0.0 | 21.707966 | 38 |
| AGACCGG | 585 | 0.0 | 21.535923 | 25 |
| CTCGTAT | 575 | 0.0 | 21.519201 | 39 |
| TATCTCG | 575 | 0.0 | 21.519201 | 36 |
| GACCGGA | 590 | 0.0 | 21.353415 | 26 |
| CGGAGCA | 590 | 0.0 | 21.353415 | 29 |
| GCATATC | 585 | 0.0 | 21.151352 | 33 |
| ATCTCGT | 595 | 0.0 | 20.795866 | 37 |
| GAGACCG | 610 | 0.0 | 20.284492 | 24 |
| GTATGCC | 610 | 0.0 | 20.284492 | 42 |