FastQCFastQC Report
Mon 6 Jun 2016
ERR1390780.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390780.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458428
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC8840.19283289851405236Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT551.12821E-732.71727842
CGGCATG551.12821E-732.71727832
ACCGGCA602.4200745E-729.99083930
CCGGCAT602.4200745E-729.99083931
GACCGGC602.4200745E-729.99083929
GATCGGA1001.8189894E-1229.24106818
AGACCGG702.8867362E-828.91973928
TCGGAAG1053.6379788E-1227.84863520
CGTATGC654.8756374E-727.6838544
TCTCGTA654.8756374E-727.6838541
ATCTCGT755.6403223E-826.99175340
ATCGGAA1159.094947E-1225.42701519
AGATCGG1201.6370905E-1124.36755617
TCGTATG751.698445E-623.9926743
GAGACCG903.2876778E-722.49312827
CGAGATC1459.094947E-1221.71750315
CCCGGGT550.003939947620.44829845
CCGAGAC1552.3646862E-1120.31637645
CGGAAGA1503.43789E-1019.49404321
GTATGCC951.3164772E-518.94158245