Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378826.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 760298 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGGAACATCTCGTATGCCGTC | 1165 | 0.15322939163328064 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGGAACATCTCGTATGCC | 1136 | 0.14941509776429768 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 135 | 0.0 | 38.32902 | 45 |
| GTCCGAC | 25 | 0.0021071443 | 35.998318 | 36 |
| TATGCCG | 150 | 0.0 | 34.49612 | 43 |
| ATGCCGT | 185 | 0.0 | 27.969826 | 44 |
| CGGAAGA | 270 | 0.0 | 20.844698 | 1 |
| CGCCCGG | 55 | 0.0039363974 | 20.453588 | 13 |
| TCTCGTA | 265 | 0.0 | 20.375065 | 41 |
| AGAGCGG | 400 | 0.0 | 19.131655 | 2 |
| GCGGTTC | 405 | 0.0 | 18.892977 | 5 |
| AGACCGT | 275 | 0.0 | 18.81854 | 25 |
| GAGACCG | 300 | 0.0 | 18.750357 | 27 |
| CGGTTCA | 410 | 0.0 | 18.662575 | 6 |
| CATCTCG | 290 | 0.0 | 18.61982 | 39 |
| AATGCCG | 400 | 0.0 | 18.561632 | 18 |
| ATGCCGA | 400 | 0.0 | 18.561632 | 19 |
| GAGCGGT | 425 | 0.0 | 18.53586 | 3 |
| CTCGTAT | 280 | 0.0 | 18.481277 | 39 |
| CGTATGC | 295 | 0.0 | 18.303024 | 41 |
| AAGAGCG | 425 | 0.0 | 18.009819 | 1 |
| ATCTCGT | 300 | 0.0 | 17.999159 | 40 |