FastQCFastQC Report
Mon 6 Jun 2016
ERR1390719.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390719.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences802506
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA653.6925485E-1034.60436218
CTCGTAT453.4971392E-529.99044842
TTGCGTC300.00515436529.99044616
TCGGAAG702.8929207E-828.9193620
ATCGGAA803.4033292E-928.11604319
AGATCGG755.6521458E-826.99140417
CGTATGC507.171281E-526.99140444
TCTCGTA507.171281E-526.99140441
ACCGCCA751.7012899E-623.9923630
AGCTCCG802.9811308E-622.49283635
GACCGCC602.471932E-422.49283429
GCTCCGC602.471932E-422.49283436
CCGCCAT855.0429753E-621.16972731
ACGCCCG550.003942784420.44803212
CGACATA550.003942784420.44803220
GCGGTTC1009.0756294E-720.24355128
CGCCCGG908.268882E-619.99363113
AGCGGTT1051.4488705E-619.27957327
TCGTATG706.995935E-419.27957343
CAAGGCG600.006520803618.74402813