FastQCFastQC Report
Mon 6 Jun 2016
ERR1378620.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378620.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493080
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA17760.36018495984424437No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA12680.25715908169059787No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG1950.041.53513
CGTCATA2000.040.49662424
GACGTCA2100.038.5682122
TGACGTC2100.038.5682121
ATGACGT2100.038.5682120
CGATGAC2200.037.83775318
AGCCGAT2150.037.67127615
ACGTCAT2150.037.67127623
AGATTCG301.1395356E-437.49687610
GATTCGG301.1395356E-437.49687611
CCGATGA2200.036.81511317
GCCGATG2200.036.81511316
TCGGTAT1300.036.34312423
GATGACG2350.035.4225819
TCGGGGA1350.034.9970814
ATAAGCC2400.033.7471912
TATGCCG401.559657E-533.74718543
AATTCGG1400.033.74718520
TTCGGTA1400.033.74718522
CGGTATT1400.033.74718524