Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378880.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1030059 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3982 | 0.3865797978562393 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCATTAATCTCGTATGCCGTC | 2835 | 0.275226953019196 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCATTAATCTCGTATGCC | 1989 | 0.19309573529283275 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 355 | 0.0 | 36.759254 | 43 |
| ATCGGAA | 595 | 0.0 | 35.161694 | 27 |
| GATCGGA | 605 | 0.0 | 34.952343 | 26 |
| TCGGAAG | 610 | 0.0 | 34.669212 | 28 |
| ATGCCGT | 380 | 0.0 | 34.34088 | 44 |
| AGATCGG | 620 | 0.0 | 34.106724 | 25 |
| TGCCGTC | 390 | 0.0 | 33.46035 | 45 |
| ATGCCGA | 1180 | 0.0 | 29.740372 | 19 |
| AATGCCG | 1175 | 0.0 | 29.675474 | 18 |
| CCGAGAT | 735 | 0.0 | 29.382431 | 22 |
| GAGATCG | 735 | 0.0 | 29.076363 | 24 |
| TGCCGAG | 1230 | 0.0 | 28.34852 | 20 |
| CGAGATC | 770 | 0.0 | 27.754707 | 23 |
| GAATGCC | 1285 | 0.0 | 26.960094 | 17 |
| GCCGAGA | 1280 | 0.0 | 26.889656 | 21 |
| CGGAAGA | 830 | 0.0 | 25.479784 | 29 |
| CTCGTAT | 520 | 0.0 | 25.095259 | 39 |
| TCTCGTA | 530 | 0.0 | 24.619375 | 38 |
| TCGTATG | 535 | 0.0 | 24.391655 | 40 |
| GGAATGC | 1460 | 0.0 | 23.882658 | 16 |