FastQCFastQC Report
Mon 6 Jun 2016
ERR1378771.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378771.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences917327
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACATAATCTCGTATGCC14000.15261733275048048Illumina Paired End PCR Primer 2 (97% over 36bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAACATAATCTCGTATGCCGTC12870.14029893374990599Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1400.038.56792443
TGCCGTC1500.035.9967345
ATGCCGT1800.029.99727444
CGAACAT3000.022.4991832
ACCGAAC2950.022.1178430
CGTATGC3000.021.74802444
CTCGTAT2900.021.72216442
GACCGAA3100.021.0476229
TCGTATG3100.021.04647443
TCTCGTA3000.020.99809341
AGACCGA3150.020.71353328
AATCTCG3200.020.38988339
CGGAAGA3600.020.0079981
ATCTCGT3150.019.99818440
CCGAACA3300.019.77200931
GAGACCG3400.019.19047727
AGATCGG1302.7715942E-819.0377725
CGAGACC3650.018.4924826
CCGAGAC3550.018.37961425
GATCGGA1354.271169E-818.33266626