Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378642.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 888996 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2930 | 0.32958528497316075 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2275 | 0.2559066632470787 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 45 | 3.8562575E-10 | 44.996456 | 43 |
| CGGTATT | 350 | 0.0 | 40.496807 | 24 |
| GGCGGTC | 355 | 0.0 | 39.926434 | 35 |
| TTCGGTA | 355 | 0.0 | 39.926434 | 22 |
| CGTCATA | 285 | 0.0 | 39.470577 | 24 |
| ATTCGGT | 360 | 0.0 | 39.3719 | 21 |
| TCGGTAT | 360 | 0.0 | 39.3719 | 23 |
| AGGCGGT | 360 | 0.0 | 38.74695 | 34 |
| GAATTCG | 375 | 0.0 | 38.396973 | 19 |
| ACGTCAT | 295 | 0.0 | 38.13259 | 23 |
| CTCGGGG | 325 | 0.0 | 38.07392 | 13 |
| AGCCGAT | 290 | 0.0 | 38.014248 | 15 |
| GCGGTCT | 380 | 0.0 | 37.891754 | 36 |
| CGGGGAA | 375 | 0.0 | 37.79702 | 15 |
| TAAGCCG | 295 | 0.0 | 37.369938 | 13 |
| ATGACGT | 305 | 0.0 | 36.88234 | 20 |
| CCGATGA | 310 | 0.0 | 36.287468 | 17 |
| GACGTCA | 310 | 0.0 | 36.287468 | 22 |
| GATGACG | 310 | 0.0 | 36.287468 | 19 |
| CGATGAC | 310 | 0.0 | 36.287468 | 18 |