Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378922.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 504532 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGGACATCTCGTATGCC | 7790 | 1.5440051374342956 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 4008 | 0.7943995623667082 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 888 | 0.1760046934584922 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 940 | 0.0 | 36.385063 | 41 |
| CTCGTAT | 950 | 0.0 | 36.002064 | 42 |
| GCGTTCT | 25 | 0.0021053983 | 36.00206 | 1 |
| GTATGCC | 945 | 0.0 | 35.95088 | 45 |
| CCGAAGG | 940 | 0.0 | 35.902752 | 31 |
| CGTATGC | 965 | 0.0 | 35.43893 | 44 |
| TCGTATG | 965 | 0.0 | 35.43893 | 43 |
| CGAAGGA | 960 | 0.0 | 35.389145 | 32 |
| ATCTCGT | 970 | 0.0 | 35.25975 | 40 |
| CATCTCG | 975 | 0.0 | 35.078934 | 39 |
| GAGACCG | 985 | 0.0 | 34.49094 | 27 |
| GACCGAA | 995 | 0.0 | 34.144302 | 29 |
| AGACCGA | 995 | 0.0 | 34.144302 | 28 |
| ACCGAAG | 995 | 0.0 | 33.91818 | 30 |
| GGACATC | 1050 | 0.0 | 32.78759 | 36 |
| GAAGGAC | 1060 | 0.0 | 32.475056 | 33 |
| CGAGACC | 1075 | 0.0 | 32.02192 | 26 |
| ACATCTC | 1070 | 0.0 | 31.964447 | 38 |
| AGATCGG | 550 | 0.0 | 31.91092 | 17 |
| GACATCT | 1115 | 0.0 | 30.876207 | 37 |