FastQCFastQC Report
Mon 6 Jun 2016
ERR1378637.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378637.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1071504
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA41070.3832930161716615No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA28620.2671011960757963No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGTAT3750.041.99751723
CGTCATA3700.041.35083824
CGGTATT3850.040.9085824
ACGTCAT3750.040.7975923
TTCGGTA3850.040.32229222
AGCCGAT3800.040.26077715
TAAGCCG3800.040.26077713
GCGGTCT4050.038.88840536
CCGATGA3950.038.7318917
GGCGGTC4200.038.03524435
CTCGGGG3750.037.79776413
GACGTCA4050.037.77554322
AAGCCGA4050.037.77554314
TCGGGGA4300.037.14896814
TGACGTC4150.036.8652921
ATGACGT4150.036.8652920
ATTCGGT4250.036.52725221
AATTCGG4250.036.52725220
AGGCGGT4350.036.20644834
GCCGATG4250.035.9978716