Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379284.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 418197 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGGTAAATCTCGTATGCC | 768 | 0.18364550678268854 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGCGGTA | 80 | 0.0 | 44.996056 | 32 |
| TCTCGTA | 80 | 0.0 | 44.996056 | 41 |
| CCGCGGT | 80 | 0.0 | 44.996056 | 31 |
| CTCGTAT | 90 | 0.0 | 42.496273 | 42 |
| GCGGTAA | 85 | 0.0 | 42.364426 | 33 |
| CGTATGC | 90 | 0.0 | 39.99649 | 44 |
| ACCGCGG | 90 | 0.0 | 39.99649 | 30 |
| GACCGCG | 90 | 0.0 | 39.99649 | 29 |
| CGGTAAA | 95 | 0.0 | 37.90501 | 34 |
| AATGCCG | 95 | 0.0 | 37.89141 | 21 |
| TCGTATG | 95 | 0.0 | 37.89141 | 43 |
| AGCGGTT | 100 | 0.0 | 35.99684 | 7 |
| ATCTCGT | 110 | 0.0 | 34.773834 | 40 |
| CGGAAGA | 105 | 0.0 | 34.299114 | 1 |
| AGAGCGG | 105 | 0.0 | 34.286808 | 5 |
| GAGCGGT | 105 | 0.0 | 34.282707 | 6 |
| ATGCCGA | 105 | 0.0 | 34.282707 | 22 |
| TGCCGAG | 105 | 0.0 | 34.282707 | 23 |
| GAGACCG | 115 | 0.0 | 33.25795 | 27 |
| AAGAGCG | 110 | 0.0 | 32.73223 | 4 |