FastQCFastQC Report
Mon 6 Jun 2016
ERR1378939.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378939.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences879992
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTCCAATCTCGTATGCC98431.1185328957535978Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC62040.7050064091491741Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT13980.15886508059164173Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT12700.036.14063640
TCTCGTA12700.036.14063641
CCGGCTC13750.035.9989131
CGTATGC13050.035.690644
CTCGTAT12900.035.5823442
GACCGGC13900.035.44856629
GTATGCC13150.035.4191945
CGGCTCC14050.035.23024732
AGACCGG14050.035.0701128
ACCGGCT14100.034.94574730
AATCTCG13150.034.90388539
TCGTATG13500.034.33424443
GAGACCG14250.034.2621227
CTCCAAT15000.032.84900335
CCAATCT14850.031.96872737
AGATCGG9450.031.66570917
TCCAATC15000.031.6490436
CGAGACC15600.031.5855826
GCTCCAA15800.031.47056434
GGCTCCA15800.031.32816333