FastQCFastQC Report
Mon 6 Jun 2016
ERR1390628.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390628.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2252013
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGACGC250.002110116235.99102827
GTACGCG300.00515681229.9898643
GTCGATC1159.094947E-1225.42731536
TCGTATG1350.024.9915543
CGAAGTC1252.910383E-1123.39209232
GACCGAA1405.456968E-1222.49389529
TCTCGTA1500.022.49239541
CCGAAGT1459.094947E-1221.71679531
AGTCGAT1401.382432E-1020.88672435
CGTATGC1401.382432E-1020.88579644
CGCCCGG2100.020.35116813
CCGGCTA2550.019.40606516
ACGCCCG1403.101377E-919.28048112
ACCGAAG1757.2759576E-1219.28005430
GAAGTCG1555.366019E-1018.86542933
AGATCGG2750.018.81265617
GATCGGA2700.018.32754518
AGACCGA1851.6370905E-1118.23869728
ATCTCGT1851.6370905E-1118.23707840
CTCGTAT1802.0918378E-1017.49408542