Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378938.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 625087 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAATAAATCTCGTATGCC | 13491 | 2.1582595702678185 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 8232 | 1.316936682413808 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1762 | 0.28188076219790204 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAA | 670 | 0.1071850798368867 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
| GGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAATAAATCTCGTATGCCG | 669 | 0.10702510210578688 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGAATAAATCTCGTATGCCGTC | 635 | 0.10158585924839261 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGAATA | 1985 | 0.0 | 36.72446 | 32 |
| GTATGCC | 1890 | 0.0 | 36.66569 | 45 |
| GACCGGA | 1985 | 0.0 | 36.611115 | 29 |
| GAGACCG | 1990 | 0.0 | 36.519123 | 27 |
| CCGGAAT | 2000 | 0.0 | 36.449028 | 31 |
| AGACCGG | 1995 | 0.0 | 36.4276 | 28 |
| ACCGGAA | 2010 | 0.0 | 36.15575 | 30 |
| TCTCGTA | 1930 | 0.0 | 36.13893 | 41 |
| ATCTCGT | 1945 | 0.0 | 35.86023 | 40 |
| CTCGTAT | 1980 | 0.0 | 35.339966 | 42 |
| AGATCGG | 1280 | 0.0 | 35.33109 | 17 |
| CGTATGC | 1985 | 0.0 | 35.137604 | 44 |
| AATCTCG | 2000 | 0.0 | 34.87407 | 39 |
| TCGTATG | 2000 | 0.0 | 34.87407 | 43 |
| CCGAGAT | 1300 | 0.0 | 34.787533 | 14 |
| CGAGACC | 2115 | 0.0 | 34.786304 | 26 |
| CGAGATC | 1310 | 0.0 | 34.69373 | 15 |
| GATCGGA | 1330 | 0.0 | 33.833683 | 18 |
| GAGATCG | 1340 | 0.0 | 33.7491 | 16 |
| ATCGGAA | 1335 | 0.0 | 33.706966 | 19 |