Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379006.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1069953 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5840 | 0.5458183677226944 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCCGTC | 2986 | 0.2790776791130078 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCC | 1251 | 0.1169210236337484 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 460 | 0.0 | 37.67161 | 43 |
| ATGCCGT | 505 | 0.0 | 34.314735 | 44 |
| GATCGGA | 825 | 0.0 | 33.81639 | 26 |
| AGATCGG | 835 | 0.0 | 33.68085 | 25 |
| ATCGGAA | 845 | 0.0 | 33.28226 | 27 |
| TGCCGTC | 540 | 0.0 | 32.50891 | 45 |
| AATGCCG | 1460 | 0.0 | 31.127033 | 18 |
| AGACCGG | 550 | 0.0 | 31.089262 | 25 |
| TCGGAAG | 925 | 0.0 | 30.645596 | 28 |
| ATGCCGA | 1510 | 0.0 | 30.096338 | 19 |
| TGCCGAG | 1505 | 0.0 | 30.046839 | 20 |
| GAGATCG | 965 | 0.0 | 29.376684 | 24 |
| GAGACCG | 585 | 0.0 | 29.229221 | 24 |
| TCTCGTA | 595 | 0.0 | 29.117468 | 38 |
| CCGAGAT | 975 | 0.0 | 29.075382 | 22 |
| ACCGGCA | 610 | 0.0 | 28.768969 | 27 |
| CTCGTAT | 605 | 0.0 | 28.634846 | 39 |
| CGAGATC | 995 | 0.0 | 28.490952 | 23 |
| CGTATGC | 610 | 0.0 | 28.404118 | 41 |
| TCGTATG | 615 | 0.0 | 28.16924 | 40 |