Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379183.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 499629 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGTGTATCTCGTATGCC | 1504 | 0.3010233593326248 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GAGCGGT | 185 | 0.0 | 41.357975 | 6 |
| GACCGTT | 190 | 0.0 | 40.261547 | 29 |
| CGTATGC | 195 | 0.0 | 39.2292 | 44 |
| GCGGTTC | 195 | 0.0 | 39.2292 | 8 |
| AGCGGTT | 195 | 0.0 | 39.2292 | 7 |
| AGACCGT | 195 | 0.0 | 39.2292 | 28 |
| AGAGCGG | 200 | 0.0 | 38.256126 | 5 |
| GAGACCG | 200 | 0.0 | 38.24847 | 27 |
| TCTCGTA | 200 | 0.0 | 38.24847 | 41 |
| ACCGTTG | 200 | 0.0 | 38.24847 | 30 |
| CTCGTAT | 205 | 0.0 | 37.31558 | 42 |
| CGTTGTG | 205 | 0.0 | 37.31558 | 32 |
| CGGTTCA | 215 | 0.0 | 36.626442 | 9 |
| AAGAGCG | 210 | 0.0 | 36.438053 | 4 |
| TATCTCG | 210 | 0.0 | 36.427113 | 39 |
| AATGCCG | 215 | 0.0 | 35.57997 | 21 |
| CCGAGAC | 215 | 0.0 | 35.57997 | 25 |
| ATGCCGA | 215 | 0.0 | 35.57997 | 22 |
| CGGAAGA | 225 | 0.0 | 35.012615 | 1 |
| CCGTTGT | 220 | 0.0 | 34.771336 | 31 |