Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378888.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 903537 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2821 | 0.31221742994476154 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGGTAACATCTCGTATGCCGTC | 1789 | 0.19799963919573854 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGGTAACATCTCGTATGCC | 1744 | 0.19301921227354277 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 185 | 0.0 | 31.615128 | 43 |
| GATCGGA | 455 | 0.0 | 28.181025 | 26 |
| ATCGGAA | 460 | 0.0 | 27.874708 | 27 |
| TCGGAAG | 490 | 0.0 | 27.54536 | 28 |
| AGATCGG | 460 | 0.0 | 27.387196 | 25 |
| TGCCGTC | 215 | 0.0 | 27.203714 | 45 |
| ATGCCGT | 230 | 0.0 | 26.40762 | 44 |
| ATGCCGA | 825 | 0.0 | 23.996399 | 19 |
| AATGCCG | 845 | 0.0 | 23.69336 | 18 |
| TGCCGAG | 850 | 0.0 | 23.025955 | 20 |
| CCGAGAT | 555 | 0.0 | 22.699297 | 22 |
| CGAGATC | 585 | 0.0 | 21.535229 | 23 |
| CGGAAGA | 650 | 0.0 | 21.45713 | 29 |
| GAGATCG | 600 | 0.0 | 20.99685 | 24 |
| TCGTATG | 325 | 0.0 | 20.764965 | 43 |
| GCCGAGA | 925 | 0.0 | 20.429365 | 21 |
| GAATGCC | 1005 | 0.0 | 20.36895 | 17 |
| CTCGTAT | 330 | 0.0 | 19.768667 | 42 |
| CGTATGC | 335 | 0.0 | 19.473612 | 44 |
| AGCGGTT | 1065 | 0.0 | 19.248034 | 4 |