FastQCFastQC Report
Mon 6 Jun 2016
ERR1378748.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378748.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences733435
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA403.4572986E-739.3730341
GACCGAG458.697625E-734.9982529
AGACCGA501.9810996E-631.49842528
TCGTATG501.9810996E-631.49842543
CGTTGGA507.147403E-527.0041715
CGTATGC608.189441E-626.24868844
CTCGTAT608.189441E-626.24868842
CCGAGAC608.189441E-626.24868825
AGAGCGG709.287305E-725.7182625
ACCGAGT709.3038943E-725.71330
CGCCCGG551.3680074E-424.54422813
GAGCGGT802.9683324E-622.5034776
CGAGTAG702.7023138E-522.49887532
GCGGTTC702.7023138E-522.4988758
GCGCCCG500.002264492422.49887512
AGCGGTT702.7023138E-522.4988757
GAGACCG702.7023138E-522.49887527
ATCTCGT754.601488E-520.9989540
ATGCCGA754.601488E-520.9989522
TGCCGAG754.601488E-520.9989523