Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379385.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1196485 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATCGAATCTCGTATGCC | 1936 | 0.16180729386494608 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGGA | 280 | 0.0 | 40.981613 | 29 |
| AGACCGG | 295 | 0.0 | 38.8978 | 28 |
| ACCGGAT | 300 | 0.0 | 38.249504 | 30 |
| CGTATGC | 285 | 0.0 | 37.894245 | 44 |
| TCGTATG | 285 | 0.0 | 37.894245 | 43 |
| CGGATCG | 305 | 0.0 | 37.622463 | 32 |
| TCTCGTA | 295 | 0.0 | 37.372395 | 41 |
| CCGGATC | 310 | 0.0 | 37.015648 | 31 |
| GAGACCG | 310 | 0.0 | 37.015648 | 27 |
| GGATCGA | 315 | 0.0 | 36.428097 | 33 |
| GATCGAA | 305 | 0.0 | 36.14707 | 34 |
| CTCGTAT | 300 | 0.0 | 35.99953 | 42 |
| CGAATCT | 310 | 0.0 | 35.564053 | 37 |
| TCGAATC | 310 | 0.0 | 34.838257 | 36 |
| ATCTCGT | 320 | 0.0 | 33.74956 | 40 |
| CGGTTCA | 360 | 0.0 | 32.499577 | 9 |
| GAGCGGT | 360 | 0.0 | 31.877249 | 6 |
| GCGGTTC | 360 | 0.0 | 31.874584 | 8 |
| AGCGGTT | 370 | 0.0 | 31.013111 | 7 |
| CCGAGAC | 375 | 0.0 | 30.599604 | 25 |