Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378986.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 914637 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 7582 | 0.8289627469695628 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCCGTC | 4548 | 0.4972464485910804 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCC | 1396 | 0.1526288571312991 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1156 | 0.12638893899984366 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 465 | 0.0 | 41.62312 | 43 |
| TGCCGTC | 500 | 0.0 | 38.7095 | 45 |
| ATGCCGT | 505 | 0.0 | 38.326237 | 44 |
| GATCGGA | 960 | 0.0 | 34.91899 | 26 |
| ATCGGAA | 975 | 0.0 | 33.689526 | 27 |
| TCGGAAG | 1010 | 0.0 | 33.635834 | 28 |
| AGATCGG | 1045 | 0.0 | 32.29398 | 25 |
| CCGAGAT | 1055 | 0.0 | 31.987879 | 22 |
| CGCATGA | 625 | 0.0 | 30.59747 | 29 |
| AATGCCG | 1770 | 0.0 | 30.505953 | 18 |
| TGCCGAG | 1790 | 0.0 | 30.416481 | 20 |
| CGAGATC | 1110 | 0.0 | 30.402895 | 23 |
| CGTATGC | 640 | 0.0 | 30.240143 | 41 |
| TCGTATG | 640 | 0.0 | 30.240143 | 40 |
| GAGATCG | 1125 | 0.0 | 30.197506 | 24 |
| ATGCCGA | 1805 | 0.0 | 29.914425 | 19 |
| TCTCGTA | 650 | 0.0 | 29.42869 | 38 |
| CCGCATG | 660 | 0.0 | 29.315758 | 28 |
| CTCGTAT | 660 | 0.0 | 28.982801 | 39 |
| GAATGCC | 1880 | 0.0 | 28.721031 | 17 |