Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378881.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 876416 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3646 | 0.4160124872206806 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTTCATCTCGTATGCCGTC | 2320 | 0.2647144734920403 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTTCATCTCGTATGCC | 1482 | 0.16909778004965678 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 355 | 0.0 | 38.02219 | 43 |
| ATGCCGT | 385 | 0.0 | 35.05942 | 44 |
| TGCCGTC | 425 | 0.0 | 31.759712 | 45 |
| GATCGGA | 515 | 0.0 | 31.012772 | 26 |
| AGATCGG | 520 | 0.0 | 30.716324 | 25 |
| ATCGGAA | 530 | 0.0 | 30.559486 | 27 |
| TCGGAAG | 575 | 0.0 | 30.12398 | 28 |
| AATGCCG | 1090 | 0.0 | 28.067379 | 18 |
| ATGCCGA | 1100 | 0.0 | 27.813808 | 19 |
| TGCCGAG | 1115 | 0.0 | 27.439632 | 20 |
| CCGAGAT | 595 | 0.0 | 26.844519 | 22 |
| CTCGTAT | 520 | 0.0 | 26.390081 | 39 |
| TCTCGTA | 520 | 0.0 | 25.955976 | 38 |
| ACCGTAG | 520 | 0.0 | 25.955976 | 27 |
| GAATGCC | 1200 | 0.0 | 25.869457 | 17 |
| CCGTAGT | 530 | 0.0 | 25.46624 | 28 |
| GCCGAGA | 1165 | 0.0 | 25.29645 | 21 |
| CGTATGC | 535 | 0.0 | 25.229677 | 41 |
| GACCGTA | 535 | 0.0 | 25.22824 | 26 |
| AGACCGT | 545 | 0.0 | 25.179527 | 25 |