FastQCFastQC Report
Mon 6 Jun 2016
ERR1378897.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378897.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1168948
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGCTTATCTCGTATGCC88560.7576042732439767Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC57500.49189527677877887Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT12050.037.34375840
TATCTCG12050.037.34375839
CTCGTAT12100.037.18944542
TCTCGTA12200.036.88461341
GACCGTA12450.036.50539829
CCGTAGC12450.036.50539831
CGTATGC12350.036.43662344
TCGTATG12350.036.43662343
CGTAGCT12550.036.393832
GAGACCG12750.035.6464527
AGACCGT12750.035.6464528
ACCGTAG12750.035.6464530
GTATGCC12500.035.6393945
AGATCGG7200.033.7494217
CGAGACC13700.033.3388526
GCTTATC13750.033.21761336
GATCGGA7500.032.39944518
TAGCTTA14250.032.36786734
GTAGCTT14150.032.1195933
AGCTTAT14650.031.3305235