FastQCFastQC Report
Mon 6 Jun 2016
ERR1379111.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379111.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1044270
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTAGATCTCGTATGCC40250.3854367165579783Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTAGATCTCGTATGCCGTC33810.32376684190870175Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4700.040.20767243
TGCCGTC5400.035.4121845
ATGCCGT5350.034.90212244
CGGAAGA7200.024.4151731
CTCGTAT8650.021.84694539
CGCAGTA8600.021.45077129
TCTCGTA8900.021.23123238
TCGTATG8850.021.09902440
GTATGCC9050.020.63274642
CGTATGC9100.020.51937941
CCGCAGT9100.020.51839628
ACCGCAG9100.020.51741627
AGACCGC9350.019.9688225
GACCGCA9400.019.86260226
ATCTCGT9450.019.75940137
GAAGAGC9750.019.6335833
GAGACCG9700.019.24829724
AATGCCG11700.019.22649218
CCGAGAC9950.018.99075122
GTAGATC10050.018.58151633