FastQCFastQC Report
Mon 6 Jun 2016
ERR1378929.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378929.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1185948
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCCCGAATCTCGTATGCC148571.25275307180416Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC85980.7249896285503243Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT19220.16206444127398503Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCCCG16500.036.95402532
TCTCGTA16150.036.7812241
CCGAATC16150.036.77966736
CGTATGC16400.036.49339344
CTCGTAT16350.036.33129542
GTCCCGA16850.036.18643633
CGAATCT16400.036.08333237
TCGTATG16600.036.0552343
TCCCGAA16950.035.84020234
CCCGAAT16800.035.75842735
ATCTCGT16600.035.51304640
CCGTCCC17250.035.3473331
GACCGTC17350.035.143629
ACCGTCC17600.034.644430
AATCTCG17050.034.57575239
AGACCGT17650.034.54625728
GTATGCC17300.034.46483245
GAGACCG18050.033.7806927
AGATCGG13100.033.6636517
GATCGGA13650.032.3072418