Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378798.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 812045 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCACATTATCTCGTATGCC | 1085 | 0.13361328497804922 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCACATTATCTCGTATGCCGTC | 1056 | 0.13004205431964977 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACCGCGC | 40 | 3.4575896E-7 | 39.37349 | 9 |
| TATGCCG | 145 | 0.0 | 32.584957 | 43 |
| ATGCCGT | 155 | 0.0 | 30.482702 | 44 |
| ACGCCAT | 30 | 0.0051473435 | 29.998852 | 18 |
| CCGCGCC | 55 | 4.1641997E-6 | 28.635265 | 10 |
| TGCCGTC | 165 | 0.0 | 28.635265 | 45 |
| CGCGCCC | 40 | 6.165954E-4 | 28.123922 | 11 |
| CACCGCG | 50 | 7.157723E-5 | 26.998964 | 8 |
| GCGAGAC | 60 | 2.4672836E-4 | 22.49914 | 38 |
| GCCACCG | 105 | 6.092887E-8 | 21.43171 | 6 |
| CGAGACT | 95 | 5.529637E-7 | 21.314972 | 39 |
| AAAGCGC | 65 | 4.2308116E-4 | 20.77355 | 5 |
| AGCGAGA | 65 | 4.2378518E-4 | 20.768435 | 37 |
| TCGGAAG | 120 | 1.1044904E-8 | 20.62421 | 28 |
| CCGCACA | 240 | 0.0 | 20.62421 | 31 |
| CGGAAGA | 255 | 0.0 | 20.302092 | 1 |
| CGTATGC | 255 | 0.0 | 20.29334 | 44 |
| CTCGTAT | 255 | 0.0 | 20.29334 | 42 |
| AGACCGC | 245 | 0.0 | 20.203308 | 28 |
| CCGAGAC | 260 | 0.0 | 19.903084 | 25 |