FastQCFastQC Report
Mon 6 Jun 2016
ERR1379186.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379186.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences328418
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCAATTATCTCGTATGCC8020.24420098776559143Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC850.042.35265444
CTCGTAT900.039.9997342
TATCTCG900.039.9997339
AGACCGC900.039.9997328
TCTCGTA950.037.8944841
CGCCAAT950.037.8944832
GCGGTTC1000.035.999768
GACCGCC1000.035.9997629
TCGTATG1000.035.9997643
ATCTCGT1050.034.2854840
ACCGCCA1050.034.2854830
CGGTTCA1050.034.285489
GAGACCG1050.034.2854827
AGCGGTT1100.032.727057
GAGCGGT1150.031.3041346
CCGAGAC1150.031.30413425
CCGCCAA1150.031.30413431
AGAGCGG1150.031.3041345
GTATGCC1200.029.99979845
CGAGACC1200.029.99979826