FastQCFastQC Report
Mon 6 Jun 2016
ERR1378916.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378916.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1091000
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACGGATCTCGTATGCC114001.0449129239230064Illumina Paired End PCR Primer 2 (97% over 35bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC69560.6375802016498625Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT16450.15077910174152154Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATACG14500.037.55118632
TCTCGTA14300.036.82103341
GATACGG14800.036.79001633
CCGATAC14850.036.6661431
CTCGTAT14450.036.5945342
ACGGATC14500.036.46666736
ATACGGA14700.036.42805534
CGGATCT14350.036.37745737
ATCTCGT14400.036.0948940
TACGGAT14750.035.99948535
TCGTATG14750.035.84858743
CGTATGC14900.035.7897244
ACCGATA15550.035.01557530
GTATGCC15150.034.90209245
AGACCGA15650.034.79183628
GACCGAT15750.034.5709429
GAGACCG15800.034.46153327
AGATCGG10900.033.8527317
GGATCTC16050.032.24400738
GATCGGA11550.032.142418