Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379375.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 913707 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTAGCAATCTCGTATGCC | 1540 | 0.16854418320096048 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACCGGTA | 200 | 0.0 | 42.749584 | 30 |
| CTCGTAT | 195 | 0.0 | 40.38422 | 42 |
| TCGTATG | 195 | 0.0 | 40.38422 | 43 |
| GACCGGT | 210 | 0.0 | 39.64247 | 29 |
| TCTCGTA | 205 | 0.0 | 38.41426 | 41 |
| GAGCGGT | 220 | 0.0 | 37.842613 | 6 |
| CCGGTAG | 220 | 0.0 | 37.84054 | 31 |
| CGTATGC | 215 | 0.0 | 37.674053 | 44 |
| CGGTAGC | 230 | 0.0 | 37.17355 | 32 |
| AGACCGG | 235 | 0.0 | 35.42519 | 28 |
| CGGTTCA | 240 | 0.0 | 34.687164 | 9 |
| GCGGTTC | 245 | 0.0 | 33.97926 | 8 |
| AGCGGTT | 245 | 0.0 | 33.97926 | 7 |
| CGTACCA | 40 | 1.5603222E-5 | 33.749672 | 20 |
| ATCTCGT | 235 | 0.0 | 33.510315 | 40 |
| AGAGCGG | 250 | 0.0 | 33.3015 | 5 |
| CCGAGAC | 255 | 0.0 | 32.646744 | 25 |
| GAGACCG | 275 | 0.0 | 31.090607 | 27 |
| CGGAAGA | 265 | 0.0 | 30.569086 | 1 |
| AAGAGCG | 280 | 0.0 | 30.537088 | 4 |