Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390787.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 541719 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 809 | 0.14933941766856987 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGTACGA | 35 | 2.8231746E-4 | 32.13363 | 37 |
| CGTATGC | 80 | 1.0004442E-10 | 30.928616 | 44 |
| CTCGTAT | 80 | 1.0004442E-10 | 30.928616 | 42 |
| CCGATTA | 80 | 1.0004442E-10 | 30.928616 | 31 |
| GATCGGA | 150 | 0.0 | 29.994154 | 18 |
| CGATTAA | 90 | 1.2732926E-11 | 29.991385 | 32 |
| TCTCGTA | 85 | 2.0372681E-10 | 29.109287 | 41 |
| TCGTATG | 85 | 2.0372681E-10 | 29.109287 | 43 |
| ATCGGAA | 170 | 0.0 | 27.788702 | 19 |
| ATCTCGT | 90 | 3.965397E-10 | 27.492104 | 40 |
| AGATCGG | 165 | 0.0 | 27.267412 | 17 |
| TCGGAAG | 170 | 0.0 | 26.462988 | 20 |
| GACCGAT | 95 | 7.421477E-10 | 26.04515 | 29 |
| GTATGCC | 95 | 7.421477E-10 | 26.04515 | 45 |
| ACCGATT | 100 | 1.3460522E-9 | 24.742893 | 30 |
| GTGGCGC | 70 | 2.7036524E-5 | 22.495617 | 11 |
| AGTGGCG | 60 | 2.4684268E-4 | 22.495615 | 10 |
| CCGAGAC | 205 | 0.0 | 21.944918 | 45 |
| AGACCGA | 115 | 6.7720975E-9 | 21.515558 | 28 |
| GAGATCG | 225 | 0.0 | 20.995907 | 16 |