FastQCFastQC Report
Mon 6 Jun 2016
ERR1378841.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378841.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences900192
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT29040.3225978457928975Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTCAAATCTCGTATGCC25840.2870498738046995Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTCAAATCTCGTATGCCGTC22200.24661405566812414Illumina Paired End PCR Primer 2 (96% over 32bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2800.035.35566343
ATGCCGT3000.032.99861544
TGCCGTC3150.031.42725245
ATCGGAA3950.029.61571927
GATCGGA4100.029.08091426
AGATCGG4250.027.52519825
TCGGAAG4350.027.4111228
CCGAGAT4500.025.99602122
AATGCCG9000.023.99632618
GAGATCG4900.023.87389824
TGCCGAG9050.023.86374920
ATGCCGA9600.022.49655719
CGAGATC5300.022.07209423
GCCGAGA9950.021.7052221
TCGTATG5100.021.6167443
CTCGTAT5250.020.99911942
CGTATGC5200.020.76835844
GACCGCT5200.020.76720629
TCTCGTA5250.020.57056641
AGACCGC5250.020.56942428