Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390640.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 683245 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCCTCATCTCGTATGCC | 1382 | 0.2022700495429897 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 720 | 0.10537947588346787 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGTATG | 150 | 0.0 | 43.48875 | 43 |
| TCTCGTA | 175 | 0.0 | 39.846836 | 41 |
| CATCTCG | 165 | 0.0 | 39.53523 | 39 |
| CGTATGC | 170 | 0.0 | 38.37243 | 44 |
| CTCGTAT | 170 | 0.0 | 38.37243 | 42 |
| ATCTCGT | 175 | 0.0 | 37.276073 | 40 |
| CGTTCCT | 175 | 0.0 | 37.276073 | 32 |
| ACCGTTC | 175 | 0.0 | 37.276073 | 30 |
| GACCGTT | 185 | 0.0 | 35.26115 | 29 |
| AGACCGT | 195 | 0.0 | 33.452885 | 28 |
| GAGACCG | 210 | 0.0 | 31.063395 | 27 |
| TCGATGG | 30 | 0.005108222 | 30.045017 | 5 |
| GTATGCC | 220 | 0.0 | 29.65142 | 45 |
| CCGTTCC | 225 | 0.0 | 28.9925 | 31 |
| CCGAGAC | 250 | 0.0 | 26.093252 | 25 |
| AGATCGG | 155 | 0.0 | 24.672844 | 17 |
| CGAGACC | 280 | 0.0 | 24.100908 | 26 |
| TCGGAAG | 160 | 0.0 | 23.900066 | 20 |
| GATCGGA | 165 | 0.0 | 23.177519 | 18 |
| CCGGCTA | 100 | 3.6459824E-8 | 22.495829 | 16 |