FastQCFastQC Report
Mon 6 Jun 2016
ERR1378677.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378677.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1008057
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA855.456968E-1231.76109941
GACCGTT950.030.78597829
CGCCCGG554.1679505E-628.63311413
ACCGTTC952.3646862E-1128.41782830
ATCTCGT1004.5474735E-1126.99693540
GAGCGGT1105.456968E-1226.6063656
CTCGTAT1105.456968E-1226.5878942
AGCGGTT1105.456968E-1226.587897
CCGTTCT1101.5279511E-1024.54388631
TCGTATG1101.5279511E-1024.5426743
GCGGTTC1201.6370905E-1124.3722348
AGAGCGG1305.0931703E-1122.5130795
CGGTTCA1305.0931703E-1122.4974469
TGCCGAG1358.367351E-1121.66420723
GAGACCG1257.530616E-1021.59754827
AGACCGT1257.530616E-1021.59754828
CGTATGC1156.7757355E-921.51929744
ATGCCGA1501.4551915E-1120.99761622
CGTTCTG1401.364242E-1020.89152132
CCGAGAC1301.2278178E-920.76687225