Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379351.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1092235 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTCTATCTCGTATGCC | 1263 | 0.11563445595499137 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 160 | 0.0 | 39.37456 | 42 |
| CGTATGC | 165 | 0.0 | 36.817772 | 44 |
| GACCGTA | 165 | 0.0 | 36.817772 | 29 |
| TATCTCG | 175 | 0.0 | 35.9996 | 39 |
| TCGTATG | 175 | 0.0 | 34.713898 | 43 |
| CCGTAGT | 180 | 0.0 | 33.749622 | 31 |
| TCTCGTA | 190 | 0.0 | 33.157524 | 41 |
| ACCGTAG | 190 | 0.0 | 31.973326 | 30 |
| ATCTCGT | 205 | 0.0 | 30.731363 | 40 |
| CGTAGTC | 200 | 0.0 | 30.37466 | 32 |
| GAGACCG | 210 | 0.0 | 28.928247 | 27 |
| AGACCGT | 210 | 0.0 | 28.928247 | 28 |
| CGGAAGA | 225 | 0.0 | 28.00225 | 1 |
| CGGTTCA | 230 | 0.0 | 27.390999 | 9 |
| GTATGCC | 225 | 0.0 | 26.999697 | 45 |
| GAGCGGT | 230 | 0.0 | 26.413958 | 6 |
| AGCGGTT | 240 | 0.0 | 26.249708 | 7 |
| GCGGTTC | 235 | 0.0 | 25.850775 | 8 |
| AGAGCGG | 250 | 0.0 | 25.202026 | 5 |
| CCGAGAC | 265 | 0.0 | 22.92427 | 25 |