Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378824.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 670439 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACAACATCTCGTATGCC | 1263 | 0.18838402897206158 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGACAACATCTCGTATGCCGTC | 1089 | 0.16243088483814336 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 110 | 0.0 | 32.7238 | 43 |
| TGCCGTC | 115 | 0.0 | 31.301027 | 45 |
| CTCGTAT | 275 | 0.0 | 28.633326 | 42 |
| ATGCCGT | 130 | 0.0 | 27.68937 | 44 |
| ACCGGAC | 285 | 0.0 | 27.630709 | 30 |
| GACCGGA | 285 | 0.0 | 27.630709 | 29 |
| TCTCGTA | 285 | 0.0 | 27.628647 | 41 |
| CCGGACA | 295 | 0.0 | 26.694073 | 31 |
| TCGTATG | 305 | 0.0 | 26.554562 | 43 |
| GAGACCG | 300 | 0.0 | 26.249172 | 27 |
| AGACCGG | 300 | 0.0 | 26.249172 | 28 |
| CGGACAA | 305 | 0.0 | 25.81886 | 32 |
| CATCTCG | 305 | 0.0 | 25.81886 | 39 |
| CGTATGC | 315 | 0.0 | 24.997349 | 44 |
| ATCTCGT | 320 | 0.0 | 24.606766 | 40 |
| CCGAGAC | 335 | 0.0 | 23.506723 | 25 |
| GGACAAC | 340 | 0.0 | 23.161036 | 33 |
| CGGAAGA | 350 | 0.0 | 23.157673 | 1 |
| CGAGACC | 345 | 0.0 | 22.825369 | 26 |
| GTATGCC | 350 | 0.0 | 22.497614 | 45 |