FastQCFastQC Report
Mon 6 Jun 2016
ERR1390656.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390656.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1145972
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGGT602.4227484E-729.99464829
GCGCAAC300.005151744529.99464822
GTGGTCG300.00515284429.99333820
CGGTTTA709.3255403E-725.70857632
ATCGGAA851.8968967E-723.81927919
GATCGGA903.292589E-722.49598518
CGATCTG500.002267529322.4950057
CTCGTAT802.981611E-622.49402242
TCGTATG855.043783E-621.17084343
ACGAGAC550.003940600420.45089735
ACCGGTT908.263949E-619.99643130
AGATCGG1051.4474281E-619.28311517
TTCGATC600.0064648318.7728675
ATCTCGT1002.050539E-517.99600440
CGTATGC1002.0513087E-517.99521844
CCGGTTT1104.6480563E-516.3592931
TCGGAAG1257.642224E-616.19640220
GAGACCG1156.7902845E-515.65006527
AGACCGG1156.7902845E-515.65006528
CATCTCG1156.7928166E-515.64938139