Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378899.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1302613 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAACTAATCTCGTATGCC | 10072 | 0.7732150684815828 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 5624 | 0.4317475719956733 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGCAACT | 1455 | 0.0 | 33.556328 | 32 |
| CTCGTAT | 1480 | 0.0 | 33.29355 | 42 |
| AGATCGG | 915 | 0.0 | 33.196354 | 17 |
| TCTCGTA | 1495 | 0.0 | 32.9595 | 41 |
| TCGTATG | 1495 | 0.0 | 32.9595 | 43 |
| AGACCGC | 1480 | 0.0 | 32.837475 | 28 |
| ATCTCGT | 1490 | 0.0 | 32.768093 | 40 |
| CGTATGC | 1490 | 0.0 | 32.768093 | 44 |
| GACCGCA | 1490 | 0.0 | 32.61709 | 29 |
| GTATGCC | 1500 | 0.0 | 32.39964 | 45 |
| CCGCAAC | 1500 | 0.0 | 32.39964 | 31 |
| GAGACCG | 1505 | 0.0 | 32.292 | 27 |
| AATCTCG | 1525 | 0.0 | 32.163578 | 39 |
| ACCGCAA | 1525 | 0.0 | 31.868498 | 30 |
| ATCGGAA | 970 | 0.0 | 31.314087 | 19 |
| GATCGGA | 975 | 0.0 | 30.922735 | 18 |
| TCGGAAG | 1010 | 0.0 | 29.851152 | 20 |
| GCAACTA | 1670 | 0.0 | 29.505661 | 33 |
| ACTAATC | 1670 | 0.0 | 29.370932 | 36 |
| CGAGATC | 1040 | 0.0 | 28.990063 | 15 |