FastQCFastQC Report
Mon 6 Jun 2016
ERR1378833.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378833.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences904143
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT30420.33645120296236325Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGATTAATCTCGTATGCC27590.3051508445013676Illumina Paired End PCR Primer 2 (97% over 34bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGATTAATCTCGTATGCCGTC27440.30349181490096144Illumina Paired End PCR Primer 2 (96% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3550.039.29036743
ATGCCGT3900.035.76430544
ATCGGAA4500.034.99324827
GATCGGA4650.033.86443326
TGCCGTC4100.032.922345
TCGGAAG5100.031.75857528
AGATCGG5000.031.49392325
GAGATCG6150.025.60481624
CGAGATC6300.024.99517823
AATGCCG12200.024.70834518
TGCCGAG12400.024.49124120
ATGCCGA12450.024.21219419
GAATGCC13850.022.089617
CTCGTAT7250.022.0314542
GCCGAGA13650.021.75404221
ATCTCGT7500.021.59702740
GTATGCC7400.021.58486645
AGACCGA7400.021.58367228
CGTATGC7300.021.57237244
GGAATGC14200.021.5451416