FastQCFastQC Report
Mon 6 Jun 2016
ERR1379239.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379239.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences759196
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC401.5590747E-533.7525244
TATCTCG554.1643398E-628.63472739
ATCTCGT608.190389E-626.24850340
CTCGTAT551.3675238E-424.54566842
GACCGCA551.3681354E-424.54405229
TCTCGTA602.4662918E-422.50019841
GCGGTTC602.4673916E-422.4987168
CGCGCCC602.4673916E-422.49871611
AGACCGC602.4673916E-422.49871628
CGCAAGG602.4673916E-422.49871632
ATGCCGA602.4673916E-422.49871622
TGCCGAG602.4673916E-422.49871623
AATGCCG754.6020123E-520.99880221
CGGTTCA654.2380384E-420.7680459
CCGCGCC654.2380384E-420.76804510
CCGCAAG654.2380384E-420.76804531
CGCCCGG908.249261E-619.99885713
TCGTATG706.9800677E-419.28588343
ACCGCAA706.9831626E-419.28461330
AGCGGTT706.9831626E-419.2846137