Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379181.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 624395 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTAGTATCTCGTATGCC | 1479 | 0.23686928947220912 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCGGTTC | 180 | 0.0 | 41.252495 | 8 |
| CGTATGC | 180 | 0.0 | 41.24919 | 44 |
| CTCGTAT | 185 | 0.0 | 40.13435 | 42 |
| CCGCTTA | 185 | 0.0 | 40.13435 | 31 |
| AGAGCGG | 190 | 0.0 | 39.08131 | 5 |
| TCTCGTA | 190 | 0.0 | 39.078182 | 41 |
| GACCGCT | 180 | 0.0 | 38.74924 | 29 |
| GAGACCG | 180 | 0.0 | 38.74924 | 27 |
| ACCGCTT | 195 | 0.0 | 38.07618 | 30 |
| AAGAGCG | 200 | 0.0 | 37.127247 | 4 |
| TCGTATG | 200 | 0.0 | 37.12427 | 43 |
| CGCTTAG | 200 | 0.0 | 37.12427 | 32 |
| ATCTCGT | 205 | 0.0 | 36.218803 | 40 |
| CGGTTCA | 205 | 0.0 | 36.218803 | 9 |
| TATCTCG | 205 | 0.0 | 36.218803 | 39 |
| CCGAGAC | 195 | 0.0 | 35.76853 | 25 |
| AATGCCG | 210 | 0.0 | 35.356453 | 21 |
| CGGAAGA | 205 | 0.0 | 35.126892 | 1 |
| GAGCGGT | 220 | 0.0 | 33.752045 | 6 |
| AGCGGTT | 230 | 0.0 | 33.262882 | 7 |