FastQCFastQC Report
Mon 6 Jun 2016
ERR1378850.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378850.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences611100
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT27780.45459008345606283Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAACCATCTCGTATGCCGTC20130.32940598919980363Illumina Paired End PCR Primer 2 (96% over 32bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAACCATCTCGTATGCC18930.30976926853215514Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTACCG207.0337765E-444.9959926
TATGCCG2700.039.99643743
GATCGGA4650.032.90029526
ATCGGAA4700.032.55029327
TGCCGTC3400.032.4235845
ATGCCGT3400.031.76187344
TCGGAAG4900.031.68344128
AGATCGG5250.029.56879425
CCGAGAT5750.027.38886522
AATGCCG9650.027.27736318
GAGATCG5750.026.99759524
CGAGATC5950.026.09011323
ATGCCGA10100.026.06203519
TGCCGAG10350.025.43251820
GAATGCC10750.024.4861917
GGAATGC11100.023.91678816
GCCGAGA10950.023.62803321
CTCGTAT4650.023.2237439
CGTATGC4700.022.97667941
TCTCGTA4700.022.97667938