Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379041.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1327117 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGTCAATCTCGTATGCC | 1652 | 0.12448035855165747 | Illumina Paired End PCR Primer 2 (97% over 38bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GTGCGAC | 20 | 7.035916E-4 | 44.997097 | 9 |
| GACCGAT | 190 | 0.0 | 40.260563 | 29 |
| ACCGATG | 200 | 0.0 | 38.24753 | 30 |
| GAGACCG | 215 | 0.0 | 36.625546 | 27 |
| AGACCGA | 210 | 0.0 | 36.426224 | 28 |
| CGTATGC | 215 | 0.0 | 34.532658 | 44 |
| CGATGTC | 235 | 0.0 | 33.508476 | 32 |
| TCTCGTA | 225 | 0.0 | 32.99787 | 41 |
| CCGATGT | 245 | 0.0 | 32.140785 | 31 |
| TCGTATG | 240 | 0.0 | 30.935507 | 43 |
| GCGTCGG | 30 | 0.0051491647 | 29.998068 | 15 |
| CTCGTAT | 250 | 0.0 | 29.698088 | 42 |
| GATCGGA | 115 | 0.0 | 27.389536 | 18 |
| ATCTCGT | 275 | 0.0 | 26.99826 | 40 |
| GTATGCC | 280 | 0.0 | 26.51615 | 45 |
| ATCGGAA | 130 | 0.0 | 25.959864 | 19 |
| CCGAGAC | 320 | 0.0 | 24.607788 | 25 |
| TCGGAAG | 140 | 0.0 | 24.10559 | 20 |
| GCGGTTC | 320 | 0.0 | 23.90561 | 8 |
| CGGTTCA | 325 | 0.0 | 23.536945 | 9 |