Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378871.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 660087 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4638 | 0.7026346527048707 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATCTTATCTCGTATGCCGTC | 3662 | 0.5547753553698225 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATCTTATCTCGTATGCC | 2558 | 0.38752467477771874 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 390 | 0.0 | 40.381287 | 43 |
| ATGCCGT | 415 | 0.0 | 37.40655 | 44 |
| TGCCGTC | 435 | 0.0 | 36.20391 | 45 |
| GATCGGA | 595 | 0.0 | 33.65014 | 26 |
| ATCGGAA | 620 | 0.0 | 33.01897 | 27 |
| TCGGAAG | 645 | 0.0 | 32.439186 | 28 |
| AGATCGG | 655 | 0.0 | 30.569998 | 25 |
| CCGAGAT | 670 | 0.0 | 30.22139 | 22 |
| CGAGATC | 665 | 0.0 | 30.110296 | 23 |
| GAGATCG | 720 | 0.0 | 27.810205 | 24 |
| AATGCCG | 1360 | 0.0 | 26.79723 | 18 |
| ATGCCGA | 1380 | 0.0 | 26.410866 | 19 |
| TGCCGAG | 1390 | 0.0 | 26.220858 | 20 |
| GAATGCC | 1455 | 0.0 | 25.356812 | 17 |
| GCCGAGA | 1430 | 0.0 | 25.172749 | 21 |
| CTCGTAT | 655 | 0.0 | 23.700335 | 39 |
| CCGGATC | 670 | 0.0 | 23.505526 | 28 |
| GGAATGC | 1595 | 0.0 | 23.413223 | 16 |
| CGGAAGA | 895 | 0.0 | 23.37796 | 29 |
| TCGTATG | 665 | 0.0 | 23.343937 | 40 |