Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378913.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1657130 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACCAATCTCGTATGCC | 11209 | 0.6764104204256758 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 7842 | 0.47322780952610843 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGTGAC | 1405 | 0.0 | 36.991966 | 31 |
| CGTGACC | 1430 | 0.0 | 36.345253 | 32 |
| CTCGTAT | 1390 | 0.0 | 36.097317 | 42 |
| TCTCGTA | 1395 | 0.0 | 35.967934 | 41 |
| CGTATGC | 1405 | 0.0 | 35.710857 | 44 |
| ATCTCGT | 1425 | 0.0 | 35.210712 | 40 |
| TCGTATG | 1435 | 0.0 | 34.964287 | 43 |
| AGACCGT | 1515 | 0.0 | 34.30608 | 28 |
| ACCGTGA | 1515 | 0.0 | 34.157566 | 30 |
| GTATGCC | 1475 | 0.0 | 33.558487 | 45 |
| GACCGTG | 1545 | 0.0 | 33.494316 | 29 |
| GAGACCG | 1560 | 0.0 | 33.46071 | 27 |
| AATCTCG | 1530 | 0.0 | 32.794292 | 39 |
| GACCAAT | 1620 | 0.0 | 31.943651 | 35 |
| ACCAATC | 1660 | 0.0 | 30.903782 | 36 |
| GTGACCA | 1685 | 0.0 | 30.844933 | 33 |
| CCAATCT | 1710 | 0.0 | 29.868582 | 37 |
| AGATCGG | 1220 | 0.0 | 29.323044 | 17 |
| CGAGACC | 1815 | 0.0 | 28.883581 | 26 |
| GATCGGA | 1255 | 0.0 | 28.505268 | 18 |