Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379165.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 676735 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGTACATCTCGTATGCC | 1423 | 0.21027433190244335 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGTT | 135 | 0.0 | 38.33245 | 29 |
| CGTATGC | 140 | 0.0 | 36.966164 | 44 |
| TCGTATG | 140 | 0.0 | 36.963436 | 43 |
| AGACCGT | 145 | 0.0 | 35.688835 | 28 |
| TCTCGTA | 150 | 0.0 | 34.499207 | 41 |
| ACCGTTG | 150 | 0.0 | 34.499207 | 30 |
| GAGCGGT | 170 | 0.0 | 34.413517 | 6 |
| AGCGGTT | 175 | 0.0 | 33.43027 | 7 |
| CCGTTGT | 155 | 0.0 | 33.38633 | 31 |
| GCGGTTC | 180 | 0.0 | 32.501656 | 8 |
| ATCTCGT | 160 | 0.0 | 32.343006 | 40 |
| CGTTGTA | 160 | 0.0 | 32.343006 | 32 |
| AGAGCGG | 195 | 0.0 | 32.311726 | 5 |
| AAGAGCG | 200 | 0.0 | 31.503931 | 4 |
| CTCGTAT | 165 | 0.0 | 31.362915 | 42 |
| GAGACCG | 170 | 0.0 | 30.440477 | 27 |
| CGGGTAA | 30 | 0.005146358 | 29.999311 | 30 |
| CGGTTCA | 200 | 0.0 | 29.249327 | 9 |
| GTATGCC | 185 | 0.0 | 29.190674 | 45 |
| ATGCCGA | 190 | 0.0 | 28.4204 | 22 |