FastQCFastQC Report
Mon 6 Jun 2016
ERR1390768.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390768.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1081749
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGAC300.00515483629.99081832
GACCGGT406.176958E-428.1163929
CGTTGGA1600.023.9520765
GATCGGA702.7092025E-522.49311318
ATCGGAA702.7092025E-522.49311319
ACCGGTG500.002268556722.4931130
TCTCGTA500.002268556722.4931141
TTCGTTG1501.4551915E-1121.0383053
TCGGAAG754.6131783E-520.99357220
CGTATGC550.003943375320.44828644
CTCGTAT550.003943375320.44828642
AGACCGG550.003943375320.44828628
TCGTTGG1552.3646862E-1120.3587074
TCGTATG600.006521769318.7442643
ACGGGAT1253.8450344E-717.9944913
GGAAACG2053.6379788E-1217.5588469
CGGGATT1305.800375E-717.30239314
AGCGGTT1053.1203363E-517.1376127
AGATCGG952.8257526E-416.57387217
GCGGTTC1156.7996705E-515.64738328