Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379146.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 250137 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAATGAATCTCGTATGCC | 1579 | 0.6312540727681231 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 215 | 0.0 | 43.952705 | 42 |
| AGACCGT | 210 | 0.0 | 43.927788 | 28 |
| CGTATGC | 220 | 0.0 | 42.95378 | 44 |
| GACCGTA | 215 | 0.0 | 42.906216 | 29 |
| GTATGCC | 225 | 0.0 | 41.999252 | 45 |
| TCGTATG | 225 | 0.0 | 41.999252 | 43 |
| CCGTAAT | 220 | 0.0 | 41.931072 | 31 |
| ATCTCGT | 230 | 0.0 | 41.086227 | 40 |
| TCTCGTA | 230 | 0.0 | 41.086227 | 41 |
| CGTAATG | 230 | 0.0 | 41.086227 | 32 |
| GAGACCG | 225 | 0.0 | 40.99927 | 27 |
| CCGAGAC | 225 | 0.0 | 40.99927 | 25 |
| GCGGTTC | 235 | 0.0 | 40.21205 | 8 |
| ACCGTAA | 230 | 0.0 | 40.107983 | 30 |
| CGGTTCA | 240 | 0.0 | 39.3743 | 9 |
| GAGCGGT | 240 | 0.0 | 39.3743 | 6 |
| AATCTCG | 240 | 0.0 | 39.3743 | 39 |
| CGAGACC | 240 | 0.0 | 39.3743 | 26 |
| AGCGGTT | 250 | 0.0 | 38.699314 | 7 |
| GCCGAGA | 245 | 0.0 | 38.570744 | 24 |