Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379118.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1190987 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTCTATCTCGTATGCC | 3257 | 0.2734706592095464 | Illumina Paired End PCR Primer 2 (97% over 38bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTCTATCTCGTATGCCGTC | 3200 | 0.26868471276344746 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 415 | 0.0 | 34.69763 | 43 |
| ATGCCGT | 465 | 0.0 | 31.450554 | 44 |
| TGCCGTC | 500 | 0.0 | 29.24902 | 45 |
| CGGAAGA | 595 | 0.0 | 25.35871 | 1 |
| CGTATGC | 725 | 0.0 | 20.792406 | 44 |
| TCGTATG | 735 | 0.0 | 20.203403 | 43 |
| CTCGTAT | 730 | 0.0 | 20.033575 | 42 |
| GACCGCT | 745 | 0.0 | 19.93138 | 29 |
| TCTCGTA | 735 | 0.0 | 19.897291 | 41 |
| TATCTCG | 750 | 0.0 | 19.799335 | 39 |
| AGACCGC | 760 | 0.0 | 19.538818 | 25 |
| ATCTCGT | 770 | 0.0 | 18.993668 | 37 |
| CCGCTCT | 795 | 0.0 | 18.677834 | 28 |
| GTATGCC | 830 | 0.0 | 18.433115 | 45 |
| ACCGCTC | 800 | 0.0 | 18.279867 | 30 |
| GCGGTTC | 975 | 0.0 | 18.236282 | 5 |
| GAGCGGT | 990 | 0.0 | 18.18961 | 3 |
| CGCTCTC | 805 | 0.0 | 18.167854 | 32 |
| CGGTTCA | 980 | 0.0 | 18.14324 | 6 |
| GAAGAGC | 860 | 0.0 | 18.06006 | 3 |