Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378930.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1834456 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCGAAATCTCGTATGCC | 11214 | 0.6112983903674987 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 6772 | 0.36915576061786165 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGTTCG | 1685 | 0.0 | 36.186222 | 31 |
| CTCGTAT | 1640 | 0.0 | 35.809162 | 42 |
| CGTTCGA | 1705 | 0.0 | 35.761745 | 32 |
| GTTCGAA | 1715 | 0.0 | 35.684418 | 33 |
| TCTCGTA | 1650 | 0.0 | 35.5902 | 41 |
| ATCTCGT | 1670 | 0.0 | 35.163967 | 40 |
| TCGAAAT | 1740 | 0.0 | 35.042404 | 35 |
| TCGTATG | 1680 | 0.0 | 34.956562 | 43 |
| GACCGTT | 1745 | 0.0 | 34.813057 | 29 |
| ACCGTTC | 1760 | 0.0 | 34.516354 | 30 |
| CGTATGC | 1715 | 0.0 | 34.374363 | 44 |
| TTCGAAA | 1795 | 0.0 | 33.96868 | 34 |
| GAGACCG | 1790 | 0.0 | 33.93787 | 27 |
| AGACCGT | 1790 | 0.0 | 33.93787 | 28 |
| GTATGCC | 1780 | 0.0 | 33.24553 | 45 |
| CGAAATC | 1830 | 0.0 | 33.196056 | 36 |
| AATCTCG | 1795 | 0.0 | 32.715225 | 39 |
| AGATCGG | 875 | 0.0 | 32.39935 | 17 |
| GATCGGA | 935 | 0.0 | 30.560886 | 18 |
| ATCGGAA | 940 | 0.0 | 30.398329 | 19 |