Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378833.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 904143 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3042 | 0.33645120296236325 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGATTAATCTCGTATGCC | 2759 | 0.3051508445013676 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGATTAATCTCGTATGCCGTC | 2744 | 0.30349181490096144 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 355 | 0.0 | 39.290367 | 43 |
| ATGCCGT | 390 | 0.0 | 35.764305 | 44 |
| ATCGGAA | 450 | 0.0 | 34.993248 | 27 |
| GATCGGA | 465 | 0.0 | 33.864433 | 26 |
| TGCCGTC | 410 | 0.0 | 32.9223 | 45 |
| TCGGAAG | 510 | 0.0 | 31.758575 | 28 |
| AGATCGG | 500 | 0.0 | 31.493923 | 25 |
| GAGATCG | 615 | 0.0 | 25.604816 | 24 |
| CGAGATC | 630 | 0.0 | 24.995178 | 23 |
| AATGCCG | 1220 | 0.0 | 24.708345 | 18 |
| TGCCGAG | 1240 | 0.0 | 24.491241 | 20 |
| ATGCCGA | 1245 | 0.0 | 24.212194 | 19 |
| GAATGCC | 1385 | 0.0 | 22.0896 | 17 |
| CTCGTAT | 725 | 0.0 | 22.03145 | 42 |
| GCCGAGA | 1365 | 0.0 | 21.754042 | 21 |
| ATCTCGT | 750 | 0.0 | 21.597027 | 40 |
| GTATGCC | 740 | 0.0 | 21.584866 | 45 |
| AGACCGA | 740 | 0.0 | 21.583672 | 28 |
| CGTATGC | 730 | 0.0 | 21.572372 | 44 |
| GGAATGC | 1420 | 0.0 | 21.54514 | 16 |