FastQCFastQC Report
Mon 6 Jun 2016
ERR1379134.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379134.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences736212
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACAATATCTCGTATGCC49220.6685574263934845Illumina Paired End PCR Primer 2 (97% over 36bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAACAATATCTCGTATGCCGTC44650.6064829152472385Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG5500.039.67943
TGCCGTC5600.038.97044845
ATGCCGT5900.036.6075744
CGGAAGA8850.028.5151731
GAAGAGC10100.025.1971573
CTCGTAT10600.023.1351542
GGAAGAG11050.023.044992
GACCGAA11150.022.59929529
CGTATGC10800.022.49840444
TCGTATG10800.022.49840443
TCTCGTA10950.022.39567241
CGAACAA11300.022.30233432
ACCGAAC11400.022.3010530
CCGAACA11400.022.10669731
AGACCGA11400.022.10219428
ATCTCGT11450.021.81067840
GTATGCC11150.021.59039745
GAGACCG11800.021.34861427
TATCTCG11500.021.32457539
CAATATC12200.020.65567636