FastQCFastQC Report
Mon 6 Jun 2016
ERR1390605.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390605.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences335786
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCCGC450.001225290224.99809627
CCCATAA951.31216675E-518.94592510
ACTAGAC1652.3430403E-816.3623919
TCCCATA1004.1585043E-415.74889
TTAGCAT1150.001199366113.69461125
TTCCCAT1709.362959E-613.2342868
TGCTTGA1403.5969363E-412.85616516
AAGCATT3355.456968E-1212.76022228
AGCATTC2857.6397555E-1012.63061729
GCATTCT2704.623871E-912.49904830
TCTTCCC2603.6729034E-812.1144636
GAAGCAT3356.184564E-1112.08863227
CTAGACA2654.7873982E-811.88588820
ATATCTT3803.6379788E-1211.8482613
TATCTTC3905.456968E-1211.544464
TCTTCAC1953.8276034E-511.5375846
AATATCT4300.011.5176122
ATCTTCC2158.1095895E-611.5176125
AACTAGA2604.8010224E-711.24914518
CAGAAGC2851.3126373E-711.0517925