FastQCFastQC Report
Mon 6 Jun 2016
ERR1378899.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378899.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1302613
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAACTAATCTCGTATGCC100720.7732150684815828Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC56240.4317475719956733Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCAACT14550.033.55632832
CTCGTAT14800.033.2935542
AGATCGG9150.033.19635417
TCTCGTA14950.032.959541
TCGTATG14950.032.959543
AGACCGC14800.032.83747528
ATCTCGT14900.032.76809340
CGTATGC14900.032.76809344
GACCGCA14900.032.6170929
GTATGCC15000.032.3996445
CCGCAAC15000.032.3996431
GAGACCG15050.032.29227
AATCTCG15250.032.16357839
ACCGCAA15250.031.86849830
ATCGGAA9700.031.31408719
GATCGGA9750.030.92273518
TCGGAAG10100.029.85115220
GCAACTA16700.029.50566133
ACTAATC16700.029.37093236
CGAGATC10400.028.99006315