Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390678.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 931227 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1605 | 0.1723532500668473 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGCCTA | 25 | 0.0021075208 | 35.997852 | 10 |
| CGCATTA | 145 | 0.0 | 32.575516 | 32 |
| TCGTATG | 145 | 0.0 | 32.575516 | 43 |
| CGACATA | 35 | 2.8254034E-4 | 32.13231 | 21 |
| ACCGCAT | 155 | 0.0 | 30.47387 | 30 |
| GACCGCA | 155 | 0.0 | 30.47387 | 29 |
| TCTCGTA | 155 | 0.0 | 30.47387 | 41 |
| CGGTGAA | 30 | 0.0051550274 | 29.990158 | 25 |
| AGACCGC | 160 | 0.0 | 29.521559 | 28 |
| CGTATGC | 170 | 0.0 | 27.784996 | 44 |
| CCGCATT | 170 | 0.0 | 27.784996 | 31 |
| GATCGGA | 305 | 0.0 | 27.286125 | 18 |
| CTCGTAT | 165 | 0.0 | 27.263779 | 42 |
| AGATCGG | 310 | 0.0 | 26.846027 | 17 |
| ATCGGAA | 320 | 0.0 | 26.709982 | 19 |
| TCGGAAG | 330 | 0.0 | 25.218996 | 20 |
| ATCTCGT | 180 | 0.0 | 24.991796 | 40 |
| CATCTCG | 190 | 0.0 | 24.860262 | 39 |
| GAGACCG | 195 | 0.0 | 24.222818 | 27 |
| CCGAGAC | 360 | 0.0 | 23.117413 | 45 |