FastQCFastQC Report
Mon 6 Jun 2016
ERR1378666.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378666.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences963726
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTT1000.038.2481529
CTCGTAT1100.034.77284642
GCGGTTC1100.034.7710468
CGTATGC1150.033.26098344
TCGTATG1150.033.26098343
AGACCGT1150.033.2592628
TCTCGTA1200.031.87510941
ACCGTTC1250.030.59851830
AGAACCG300.005148070429.99854726
GAGACCG1350.029.99854727
GAGCGGT1350.028.3378436
AGCGGTT1350.028.331967
CGGAAGA1450.027.939831
ATCTCGT1400.027.32152240
CGTTCAC1500.027.00009332
GTATGCC1500.027.00009345
CCGTTCA1500.027.00009331
AATCTCG1450.026.37940239
ATGCCGA1550.026.12776822
ACGTGAC450.001226385925.00008835