FastQCFastQC Report
Mon 6 Jun 2016
ERR1378726.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378726.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences858381
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGAC453.4903802E-529.999331
TCTCGTA453.4903802E-529.999341
CGTATGC507.15746E-526.9993744
GAGCGGT551.3664029E-424.5491736
AGACCGT551.3680248E-424.54488428
TCGTATG551.3680248E-424.54488443
CGGAAGA651.5213809E-524.234441
ACGCCCG500.002264453322.49947512
GCGGTTC602.4671914E-422.4994758
CGTGACA602.4671914E-422.49947532
AATGCCG602.4671914E-422.49947521
CTCGTAT706.9825933E-419.28526542
GACCGTG750.001110085917.9995829
TGCCGAG750.001110085917.9995823
TCACCGT901.8628236E-417.5026516
AGAGCGG800.001708635516.8775585
ATCTCGT800.001710634916.87460740
CGGTTCA800.001710634916.8746079
ACCGTGA800.001710634916.87460730
CGTTGGA1358.5626016E-716.6691935