FastQCFastQC Report
Mon 6 Jun 2016
ERR1390772.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390772.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences666992
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAT356.2553554E-638.5615329
CTCGTAT401.5623305E-533.7413442
TAGCGAT401.5623305E-533.7413435
TCGCCTG300.0051051430.0486185
CTCGAGC300.0051051430.0486186
ACCGATA453.4947858E-529.99230430
GATAGCG453.4947858E-529.99230433
CGTATGC507.166476E-526.99307344
CCGATAG507.166476E-526.99307331
ATAGCGA507.166476E-526.99307334
TCTCGTA507.166476E-526.99307341
AGACCGA507.166476E-526.99307328
CGATAGC602.4702892E-422.49422632
GATCGTG550.003901485620.484624
CTACTCG807.57184E-519.68244732
ATCTCGT706.9913256E-419.28076640
CCGAGAC706.9913256E-419.28076625
TCGTATG706.9913256E-419.28076643
CGGAAGA750.001098118318.0278191
GAGACCG750.001111471117.99538227