Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379406.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1021234 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAAGAATCTCGTATGCC | 1881 | 0.18418893221338106 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 245 | 0.0 | 38.570293 | 44 |
| CGTTAAG | 245 | 0.0 | 38.570293 | 32 |
| CTCGTAT | 250 | 0.0 | 37.80074 | 42 |
| CCGTTAA | 250 | 0.0 | 37.798893 | 31 |
| GACCGTT | 245 | 0.0 | 37.65195 | 29 |
| ACCGTTA | 250 | 0.0 | 36.89892 | 30 |
| TCGTATG | 260 | 0.0 | 36.34509 | 43 |
| ATCTCGT | 270 | 0.0 | 35.000683 | 40 |
| AGACCGT | 265 | 0.0 | 34.810295 | 28 |
| TCTCGTA | 290 | 0.0 | 32.586845 | 41 |
| AGAGCGG | 330 | 0.0 | 30.685425 | 5 |
| GAGACCG | 305 | 0.0 | 30.245014 | 27 |
| AAGAGCG | 340 | 0.0 | 29.782911 | 4 |
| AGCGGTT | 340 | 0.0 | 29.116793 | 7 |
| GAGCGGT | 350 | 0.0 | 28.931973 | 6 |
| GCGGTTC | 345 | 0.0 | 28.694809 | 8 |
| AATCTCG | 335 | 0.0 | 28.209507 | 39 |
| GTATGCC | 330 | 0.0 | 27.953722 | 45 |
| CGGTTCA | 355 | 0.0 | 27.886505 | 9 |
| CCGAGAC | 335 | 0.0 | 27.536503 | 25 |