FastQCFastQC Report
Mon 6 Jun 2016
ERR1379114.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379114.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences791484
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCC35590.44966164824557414Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCCGTC35130.4438497809178707Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4000.037.68252643
ATGCCGT4400.034.2568444
TGCCGTC5100.029.55492245
CGGAAGA7500.025.82761
TAGACGA8050.023.19569634
GACCGTA8100.023.05251129
CCGTAGA8100.023.05251131
CGTAGAC8150.022.91108732
CGTATGC8200.022.77138344
TCGTATG8200.022.77138343
CTCGTAT8250.022.63337542
TCTCGTA8300.022.49703241
ACCGTAG8300.022.49703230
CTACGAC500.002266560722.4956117
GTATGCC8350.022.36231845
GTAGACG8450.022.09767533
ATCTCGT8600.021.7122540
AGACGAT8600.021.7122535
GAAGAGC9100.021.5299113
AGACCGT8850.021.35311328