Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378929.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1185948 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCCCGAATCTCGTATGCC | 14857 | 1.25275307180416 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 8598 | 0.7249896285503243 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1922 | 0.16206444127398503 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCCCG | 1650 | 0.0 | 36.954025 | 32 |
| TCTCGTA | 1615 | 0.0 | 36.78122 | 41 |
| CCGAATC | 1615 | 0.0 | 36.779667 | 36 |
| CGTATGC | 1640 | 0.0 | 36.493393 | 44 |
| CTCGTAT | 1635 | 0.0 | 36.331295 | 42 |
| GTCCCGA | 1685 | 0.0 | 36.186436 | 33 |
| CGAATCT | 1640 | 0.0 | 36.083332 | 37 |
| TCGTATG | 1660 | 0.0 | 36.05523 | 43 |
| TCCCGAA | 1695 | 0.0 | 35.840202 | 34 |
| CCCGAAT | 1680 | 0.0 | 35.758427 | 35 |
| ATCTCGT | 1660 | 0.0 | 35.513046 | 40 |
| CCGTCCC | 1725 | 0.0 | 35.34733 | 31 |
| GACCGTC | 1735 | 0.0 | 35.1436 | 29 |
| ACCGTCC | 1760 | 0.0 | 34.6444 | 30 |
| AATCTCG | 1705 | 0.0 | 34.575752 | 39 |
| AGACCGT | 1765 | 0.0 | 34.546257 | 28 |
| GTATGCC | 1730 | 0.0 | 34.464832 | 45 |
| GAGACCG | 1805 | 0.0 | 33.78069 | 27 |
| AGATCGG | 1310 | 0.0 | 33.66365 | 17 |
| GATCGGA | 1365 | 0.0 | 32.30724 | 18 |