FastQCFastQC Report
Mon 6 Jun 2016
ERR1378735.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378735.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences787544
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGGTT401.5604426E-533.748437
GAGCGGT453.4845252E-530.0062246
AGACCGG453.490573E-529.99860228
GACCGGA406.166085E-428.12369229
GCGGTTC507.157854E-526.9987438
ACCGGAC450.001226544824.99883530
CGCGCCC450.001226544824.99883511
CGTATGC500.002264594222.49895344
CCGGACT500.002264594222.49895331
TCGTATG500.002264594222.49895343
ATGCCGA602.467329E-422.49895322
AATGCCG654.2379298E-420.76826321
GAGACCG654.2379298E-420.76826327
TCACCGA550.003936516620.45359212
CGGACTA550.003936516620.45359232
CGGAAGA807.536046E-519.6953371
CTCGTAT600.00651046718.74912642
TCTCGAT600.00651046718.74912629
CTCGATC600.00651046718.74912630
AGAGCGG750.001108257118.0037355