Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378627.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 862043 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3594 | 0.4169165575267127 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2533 | 0.29383685036593304 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGATGAC | 335 | 0.0 | 40.296326 | 18 |
| TTCGGTA | 340 | 0.0 | 39.70373 | 22 |
| ATTCGGT | 335 | 0.0 | 39.62472 | 21 |
| GCCGATG | 350 | 0.0 | 38.56934 | 16 |
| CGTCATA | 350 | 0.0 | 38.56934 | 24 |
| TTCCTCG | 315 | 0.0 | 38.56934 | 10 |
| AGCCGAT | 355 | 0.0 | 38.02611 | 15 |
| CCGATGA | 355 | 0.0 | 38.02611 | 17 |
| ACGTCAT | 360 | 0.0 | 37.497967 | 23 |
| CGGTATT | 355 | 0.0 | 37.39234 | 24 |
| GACGTCA | 365 | 0.0 | 36.9843 | 22 |
| ATGACGT | 365 | 0.0 | 36.9843 | 20 |
| GATGACG | 365 | 0.0 | 36.9843 | 19 |
| TAAGCCG | 365 | 0.0 | 36.9843 | 13 |
| CTCGGGG | 330 | 0.0 | 36.81619 | 13 |
| GCGGTCT | 370 | 0.0 | 36.48451 | 36 |
| TGACGTC | 370 | 0.0 | 36.48451 | 21 |
| GGCGGTC | 370 | 0.0 | 36.48451 | 35 |
| TCGGTAT | 370 | 0.0 | 36.48451 | 23 |
| TCCTCGG | 340 | 0.0 | 36.39509 | 11 |