Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378815.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1987426 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTCTAATCTCGTATGCCGTC | 2018 | 0.10153837174314917 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 250 | 0.0 | 37.796913 | 43 |
| TGCCGTC | 290 | 0.0 | 31.807747 | 45 |
| ATGCCGT | 330 | 0.0 | 27.952263 | 44 |
| GACCGGT | 380 | 0.0 | 24.86639 | 26 |
| ACCGGTT | 385 | 0.0 | 24.543451 | 27 |
| CCGGTTC | 390 | 0.0 | 24.22879 | 28 |
| CGTATGC | 395 | 0.0 | 23.922096 | 41 |
| TCTCGTA | 395 | 0.0 | 23.922096 | 38 |
| CTCGTAT | 400 | 0.0 | 23.623072 | 39 |
| AGACCGG | 400 | 0.0 | 23.623072 | 25 |
| TCGTATG | 420 | 0.0 | 22.498163 | 40 |
| CGGTTCT | 425 | 0.0 | 22.233479 | 29 |
| GAGACCG | 445 | 0.0 | 21.23422 | 24 |
| ATCTCGT | 470 | 0.0 | 20.10474 | 37 |
| ATGCCGA | 765 | 0.0 | 19.704273 | 19 |
| GCGGTTC | 785 | 0.0 | 19.212404 | 5 |
| AATGCCG | 790 | 0.0 | 19.08072 | 18 |
| CGGTTCA | 800 | 0.0 | 18.851698 | 6 |
| TGCCGAG | 810 | 0.0 | 18.609592 | 20 |
| GAGCGGT | 815 | 0.0 | 18.506132 | 3 |