FastQCFastQC Report
Mon 6 Jun 2016
ERR1390745.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390745.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406259
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAGGCGG300.00514909929.9931918
AGATCGG852.0372681E-1029.11103617
CGTATGC654.875237E-727.68261344
CTCGTAT654.875237E-727.68261342
GATCGGA903.947207E-1027.49375518
ATCGGAA903.947207E-1027.49375519
TCGGAAG957.403287E-1026.04671720
GACCGTG709.311116E-725.70528229
TATCTCG709.311116E-725.70528239
GAGACCG751.6964932E-623.9945527
TCTCGTA751.6983122E-623.99159841
ATCTCGT851.893768E-723.8151940
AGACCGT802.9759394E-622.49212328
TCGTATG802.9759394E-622.49212343
ACCGTGA802.9759394E-622.49212330
GAGATCG1156.7630026E-921.51420616
CGAGATC1301.2259989E-920.76196115
CCGAGAT1201.1043085E-820.6177814
CCGTGAT951.3163819E-518.94073531
CGGAAGA1354.2629836E-818.32917221