Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378596.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 681320 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2218 | 0.3255445312041332 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1802 | 0.26448658486467447 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 285 | 0.0 | 42.630672 | 13 |
| ATTCGGT | 285 | 0.0 | 41.051758 | 21 |
| TTCGGTA | 280 | 0.0 | 40.981274 | 22 |
| TCGGTAT | 280 | 0.0 | 40.981274 | 23 |
| TGACGTC | 305 | 0.0 | 39.83522 | 21 |
| GCCGATG | 305 | 0.0 | 39.83522 | 16 |
| TCGGGGA | 300 | 0.0 | 39.749157 | 14 |
| CGGTATT | 295 | 0.0 | 39.66018 | 24 |
| TCCTCGG | 245 | 0.0 | 39.488956 | 11 |
| CCGATGA | 310 | 0.0 | 39.192715 | 17 |
| AAGCCGA | 310 | 0.0 | 39.192715 | 14 |
| CGTCATA | 310 | 0.0 | 39.192715 | 24 |
| AGCCGAT | 315 | 0.0 | 38.57061 | 15 |
| ATGACGT | 315 | 0.0 | 38.57061 | 20 |
| ACGTCAT | 315 | 0.0 | 38.57061 | 23 |
| CGATGAC | 315 | 0.0 | 38.57061 | 18 |
| GGCGGTC | 310 | 0.0 | 38.466927 | 35 |
| AATTCGG | 300 | 0.0 | 38.249187 | 20 |
| GAATTCG | 310 | 0.0 | 37.741135 | 19 |
| GACGTCA | 325 | 0.0 | 37.383823 | 22 |