FastQCFastQC Report
Mon 6 Jun 2016
ERR1378733.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378733.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences852394
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG700.038.56966843
CGTATGC754.7293724E-1132.99849344
CTCGTAT754.7293724E-1132.99849342
CGAGTGA801.0004442E-1030.93608932
GCGGTTC950.030.7880698
TCTCGTA852.0372681E-1029.1163241
AGCGGTT952.3646862E-1128.4197567
CGGTTCA957.421477E-1026.0514439
GACCGAG957.421477E-1026.05144329
GAGCGGT1052.3592293E-923.5758866
CATCTCG1052.3665052E-923.57035339
AATGCCG1152.6557245E-1023.47718821
GAGACCG1104.0508894E-922.49897427
AGACCGA1104.0508894E-922.49897428
ATCTCGT1156.7666406E-921.52075640
ACCGAGT1156.7666406E-921.52075630
ATGCCGA1156.7666406E-921.52075622
TGCCGAG1156.7666406E-921.52075623
GTATGCC1201.1048542E-820.62405845
CCGAGAC1201.1048542E-820.62405825