FastQCFastQC Report
Mon 6 Jun 2016
ERR1390767.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390767.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465695
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC8360.17951663642512802Illumina Paired End PCR Primer 2 (100% over 35bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACGTAGATCTCGTATGCC5170.11101686726290813Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGACGT751.7025741E-929.99112331
ACCGACG702.8867362E-828.9200130
CGACGTA803.3942342E-928.11667832
AGATCGG1550.026.12130217
CGTATAA801.0529038E-725.30772810
ATCTCGT801.0539952E-725.3050140
CGTATGC801.0539952E-725.3050144
CTCGTAT801.0539952E-725.3050142
TCTCGTA801.0539952E-725.3050141
CCGCGCC450.001226806524.99528710
CACCGCG450.001226806524.9952878
GACGTAG901.1908924E-824.99260133
GATCGGA1650.024.53819318
ATCGGAA1650.024.53819319
TCGGAAG1700.023.8164820
AGACCGA851.8940227E-723.8164828
CGTAGAT952.1151209E-823.67720235
ACCGCGC500.00226508222.4957589
TCGTATG903.287605E-722.49334143
GAGCCGA500.002266496222.49334140