Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378909.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 953584 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCCATGATCTCGTATGCC | 11451 | 1.2008381013104248 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 6083 | 0.6379091931072669 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1405 | 0.1473388815248578 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGCCCAT | 1525 | 0.0 | 37.769833 | 32 |
| CTCGTAT | 1490 | 0.0 | 37.601986 | 42 |
| TCTCGTA | 1485 | 0.0 | 37.425552 | 41 |
| ATCTCGT | 1490 | 0.0 | 37.29996 | 40 |
| GTATGCC | 1495 | 0.0 | 37.173264 | 45 |
| CGTATGC | 1520 | 0.0 | 36.85791 | 44 |
| TCGTATG | 1530 | 0.0 | 36.61701 | 43 |
| GACCGCC | 1575 | 0.0 | 36.57079 | 29 |
| AGACCGC | 1600 | 0.0 | 35.99937 | 28 |
| CCGCCCA | 1610 | 0.0 | 35.91552 | 31 |
| ACCGCCC | 1605 | 0.0 | 35.887222 | 30 |
| GAGACCG | 1610 | 0.0 | 35.775772 | 27 |
| AGATCGG | 1005 | 0.0 | 34.47701 | 17 |
| GATCTCG | 1625 | 0.0 | 34.33966 | 39 |
| GATCGGA | 1065 | 0.0 | 32.745907 | 18 |
| GCCCATG | 1780 | 0.0 | 32.73819 | 33 |
| CGAGATC | 1070 | 0.0 | 32.38261 | 15 |
| CGAGACC | 1795 | 0.0 | 32.339268 | 26 |
| ATCGGAA | 1095 | 0.0 | 32.25971 | 19 |
| GAGATCG | 1075 | 0.0 | 32.23199 | 16 |