FastQCFastQC Report
Mon 6 Jun 2016
ERR1378718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences894633
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC458.6983346E-734.99934844
CGTCTAG458.6983346E-734.99934832
TCTCGTA501.9812578E-631.49941341
CTCGTAT554.164185E-628.6358342
GATCGGA406.1657385E-428.12447518
ATCGGAA406.1657385E-428.12447519
GACCGTC608.19008E-626.24951229
GAGACCG608.19008E-626.24951227
AGACCGT651.5234806E-524.23031828
TCGTATG651.5234806E-524.23031843
ATCTCGT754.60183E-520.99960940
CCGTCTA754.60183E-520.99960931
TATCTCG754.60183E-520.99960939
AGATCGG550.00393629120.45416517
GCGGTTC908.249221E-619.9996288
AGCGGTT1253.8316284E-717.9996627
ACCGTCT901.8653595E-417.49967430
AAGAGCG1053.11018E-517.1434964
GAGCGGT1053.11018E-517.1434966
AGAGCGG1053.11018E-517.1434965