FastQCFastQC Report
Mon 6 Jun 2016
ERR1378941.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378941.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1044959
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGAAAATCTCGTATGCC119161.1403318216312792Illumina Paired End PCR Primer 2 (97% over 35bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC71290.6822277237671526Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT15720.15043652430382434Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA14350.033.24070441
CCGGTGA14750.033.10039531
ATCGGAA10650.032.7451919
CTCGTAT14650.032.7135942
GTATGCC14700.032.60387845
ATCTCGT14650.032.56000540
AGATCGG10750.032.44058617
TCGGAAG10900.032.40698220
CGTATGC14800.032.38358344
GACCGGT15100.032.33316429
TCGTATG14850.032.27454843
ACCGGTG15150.032.22645630
CGGTGAA15300.032.0575632
GATCGGA10900.031.99415418
AGACCGG15300.031.76345628
GAGACCG15550.031.39747827
AATCTCG15500.030.77445639
CGAGATC11400.030.39354115
CCGAGAT11600.029.86951314
CGAGACC16550.029.5003526