FastQCFastQC Report
Mon 6 Jun 2016
ERR1378821.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378821.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1211832
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTATTGATCTCGTATGCCGTC15800.1303811089325913Illumina Paired End PCR Primer 2 (96% over 32bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1050.034.28461543
TGCCGTC1200.029.99903745
ATGCCGT1400.025.71346344
TCGGTAC551.3685608E-424.54466623
ACTGCGC602.4674632E-422.5002089
ATCGCGC550.003937391620.45388822
TCGCGCC550.003937391620.45388823
CCGGCTA1302.773595E-819.03785116
TGCGCCC600.00651190218.74939711
ACCGCTA2001.8189894E-1217.99942227
CTCGTAT2150.017.79012739
CCGCTAT2053.6379788E-1217.56041328
ACGTATT901.8662412E-417.49943745
CGCCCGG1551.09048415E-817.41879713
ATGCCGA3500.017.35658619
TCGTATG2105.456968E-1217.14230740
GACCGCT2251.8189894E-1216.99945426
AGACCGC2251.8189894E-1216.99945425
GATCGCG800.001711285116.87445821
CGTATGC2159.094947E-1216.74364941