FastQCFastQC Report
Mon 6 Jun 2016
ERR1379253.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379253.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences810422
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGACCGC300.005147133529.99909413
ATGCCGA453.4903056E-529.99909422
CCGGGTA406.165649E-428.12415331
ACCGGGT406.165649E-428.12415330
TCTCGTA406.165649E-428.12415341
AGACCGG406.165649E-428.12415328
CGGAAGA450.001223813625.0085031
CGTATGC450.001225576225.0023344
GAGCGGT450.001226017125.0007886
CGGGTAT450.001226458224.99924532
GAGACCG500.002264434722.49932327
AATGCCG602.4671425E-422.4993221
CGGTTCA550.003936239520.4539289
GACCGGG550.003936239520.45392829
TGCCGAG550.003936239520.45392823
AGAGCGG600.006505376718.7517475
TCGTATG600.006510013218.74943443
ACCGTCA600.006510013218.74943415
ACCACGC1904.474714E-1016.5784459
CGTGGCT900.003753402314.99954742