Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378829.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 989231 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGGACATATCTCGTATGCCGTC | 1344 | 0.13586310982975663 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 155 | 0.0 | 39.1917 | 43 |
| TGCCGTC | 165 | 0.0 | 36.816444 | 45 |
| ATGCCGT | 180 | 0.0 | 34.99835 | 44 |
| TACCGCA | 30 | 0.0051417453 | 30.006168 | 3 |
| GATCGGA | 145 | 9.094947E-12 | 21.723114 | 26 |
| TCTCGTA | 280 | 0.0 | 21.695406 | 38 |
| CGTATGC | 285 | 0.0 | 21.314783 | 41 |
| TATCTCG | 285 | 0.0 | 21.314783 | 36 |
| AGACCGG | 285 | 0.0 | 21.314783 | 25 |
| TCGTATG | 285 | 0.0 | 21.314783 | 40 |
| CTCGTAT | 290 | 0.0 | 20.947289 | 39 |
| GACCGGG | 290 | 0.0 | 20.947289 | 26 |
| ACCGGGA | 310 | 0.0 | 20.32265 | 27 |
| ATCTCGT | 300 | 0.0 | 20.249044 | 37 |
| ATGCCGA | 450 | 0.0 | 19.999056 | 19 |
| CCGGGAC | 305 | 0.0 | 19.9181 | 28 |
| CGGGACA | 305 | 0.0 | 19.9181 | 29 |
| CGGTTCA | 475 | 0.0 | 19.425045 | 6 |
| AATGCCG | 475 | 0.0 | 19.420135 | 18 |
| AGCGGTT | 485 | 0.0 | 19.024529 | 4 |