FastQCFastQC Report
Mon 6 Jun 2016
ERR1379353.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379353.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences767984
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTATCATCTCGTATGCC11200.14583637159107482Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC1300.041.5370844
GAGACCG1450.038.79181327
CGTGTAT1450.038.79181332
CTCGTAT1400.038.5726642
TCTCGTA1400.038.5726641
CCGTGTA1500.037.49875331
TCGTATG1450.037.24014343
GCGGTTC1600.036.5612838
CCGAGAC1550.036.28911625
GTCCGGT250.00210701835.99880220
GACCGTG1700.035.73410429
AGAGCGG1650.035.4602935
AGACCGT1700.033.0871328
AAGAGCG1800.032.505274
AGCGGTT1850.031.620577
AATGCCG1850.031.6205721
CGGAAGA1950.031.1588971
ATCTCGT1750.030.85812640
GAGCGGT1950.030.0009566
CGGTTCA2000.029.2490279