FastQCFastQC Report
Mon 6 Jun 2016
ERR1379213.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379213.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences363534
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACAACATCTCGTATGCC11460.31523873970522703Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT1250.044.9969742
CGGACAA1300.043.2663232
CCGGACA1300.043.2663231
ACCGGAC1350.041.66386830
CGTATGC1350.041.66386844
TCGTATG1350.041.66386843
GAGCGGT1400.040.192466
AGAGCGG1400.040.192465
GCGGTTC1400.040.1869288
CGGTTCA1400.040.1758739
CCGAGAC1400.040.17587325
CGGAAGA1500.039.0081061
AGACCGG1450.038.79049728
AAGAGCG1500.037.512964
AGCGGTT1500.037.5077977
GAGACCG1500.037.4974827
TCTCGTA1500.037.4974841
GACCGGA1550.036.28788429
AATGCCG1600.035.15388521
GTATGCC1650.034.08861545