FastQCFastQC Report
Mon 6 Jun 2016
ERR1379286.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379286.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494505
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGACAA302.1620126E-645.00293431
CGTATGC302.1635187E-644.99838344
ACCGACA356.2426134E-638.5700430
CCGAGAC356.2426134E-638.5700425
CGGAAGA401.5548476E-533.762441
CGACAAC401.5580812E-533.75219732
AGACCGA401.5591602E-533.74878728
GCGGTTC453.4877194E-529.9989228
ACCGCGC300.0051453629.9989229
GACCGAC453.4877194E-529.99892229
CGCGCCA453.4877194E-529.9989227
CACCGCG300.0051453629.9989228
TCGCGCC453.4877194E-529.9989226
AGAGCGG453.4877194E-529.9989225
ACAACGA554.15652E-628.6382334
CAACGAT554.15652E-628.6382335
GATCGCG406.1624334E-428.1239874
CTCGTAT507.152041E-526.9990342
ATCGCGC507.152041E-526.999035
AACGATC608.175077E-626.25171336