Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378988.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1099647 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 8728 | 0.7937092539696831 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCCGTC | 4691 | 0.42659144252655623 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCC | 2197 | 0.19979138759983883 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1227 | 0.11158126198680123 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 580 | 0.0 | 39.570084 | 43 |
| ATGCCGT | 625 | 0.0 | 37.081047 | 44 |
| TGCCGTC | 635 | 0.0 | 36.142754 | 45 |
| GATCGGA | 1175 | 0.0 | 34.27445 | 26 |
| ATCGGAA | 1170 | 0.0 | 34.228622 | 27 |
| TCGGAAG | 1210 | 0.0 | 33.28304 | 28 |
| AGATCGG | 1215 | 0.0 | 33.146072 | 25 |
| CCGAGAT | 1320 | 0.0 | 30.850342 | 22 |
| CGAGATC | 1370 | 0.0 | 29.560192 | 23 |
| GAGATCG | 1390 | 0.0 | 29.134865 | 24 |
| AATGCCG | 2270 | 0.0 | 28.148014 | 18 |
| TGCCGAG | 2305 | 0.0 | 27.818213 | 20 |
| ATGCCGA | 2300 | 0.0 | 27.780869 | 19 |
| GAATGCC | 2380 | 0.0 | 26.94159 | 17 |
| GCCGAGA | 2375 | 0.0 | 26.808847 | 21 |
| CGGAAGA | 1525 | 0.0 | 26.555714 | 29 |
| GGAATGC | 2465 | 0.0 | 26.01257 | 16 |
| CGAGTGA | 920 | 0.0 | 25.433187 | 29 |
| TCTCGTA | 900 | 0.0 | 25.249567 | 38 |
| TCGTATG | 900 | 0.0 | 25.249567 | 40 |