Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379347.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 964431 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTACTATCTCGTATGCC | 1258 | 0.1304396063585679 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 175 | 0.0 | 38.572098 | 42 |
| TCGTATG | 180 | 0.0 | 37.498703 | 43 |
| TATCTCG | 190 | 0.0 | 35.526928 | 39 |
| AATGCCG | 190 | 0.0 | 35.525085 | 21 |
| CGTATGC | 195 | 0.0 | 34.61419 | 44 |
| CGTGTAC | 195 | 0.0 | 34.61419 | 32 |
| TCTCGTA | 200 | 0.0 | 33.750584 | 41 |
| CCGTGTA | 200 | 0.0 | 33.748833 | 31 |
| GTATGCC | 190 | 0.0 | 33.156746 | 45 |
| GAGCGGT | 210 | 0.0 | 32.146744 | 6 |
| AGACCGT | 210 | 0.0 | 32.141743 | 28 |
| ATGCCGA | 210 | 0.0 | 32.141743 | 22 |
| ATCTCGT | 215 | 0.0 | 31.395891 | 40 |
| GACCGTG | 215 | 0.0 | 31.394264 | 29 |
| GAGACCG | 230 | 0.0 | 30.325039 | 27 |
| GCGGTTC | 225 | 0.0 | 29.998962 | 8 |
| CGGTTCA | 225 | 0.0 | 29.998962 | 9 |
| AGCGGTT | 245 | 0.0 | 27.550068 | 7 |
| CCGAGAC | 245 | 0.0 | 27.550068 | 25 |
| AAGAGCG | 255 | 0.0 | 26.475164 | 4 |