FastQCFastQC Report
Mon 6 Jun 2016
ERR1378776.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378776.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1119348
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTCAAATCTCGTATGCC11620.10381043250177784Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTCAAATCTCGTATGCCGTC11200.10005824819448465Illumina Paired End PCR Primer 2 (96% over 32bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1700.038.37987543
ATGCCGT1950.033.4593844
TGCCGTC2500.026.09831645
CGGAAGA3550.025.3572751
CTCGTAT3700.024.32384142
TCTCGTA3750.023.39953641
CGTATGC3750.023.3984944
TCGTATG3750.023.3984943
GACCGCT3950.022.78537629
ACCGCTT3900.022.50055930
CGCTTCA3900.022.50055932
AGACCGC3900.021.9236228
AGATCGG1056.105802E-821.42910425
ATCTCGT4100.021.4029740
CCGCTTC4150.021.14510331
GAGACCG4150.020.60292227
GATCGGA1109.980977E-820.45505326
ATGCCGA4400.019.94189619
AATCTCG4300.019.88421439
CCGAGAC4400.019.432325