FastQCFastQC Report
Mon 6 Jun 2016
ERR1390762.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390762.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences972566
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA855.456968E-1231.75806619
GCCGCTT300.00514825429.99835611
GATCGGA901.2732926E-1129.99372718
AGATCGG1004.5474735E-1126.99435417
TCGGAAG1152.6557245E-1023.47214520
TGCGCCA602.4449447E-422.5300453
TCTCGTA702.7078855E-522.49413941
GACCGGA754.6109446E-520.9945329
CTCGTAT654.2450422E-420.7638242
GAGACCG807.573631E-519.68338427
CCGGCTA1503.45608E-1019.49592216
CGGGATT1454.782123E-918.61679614
GAGCGGT1709.276846E-1118.5255426
CCTTCGT1507.1413524E-918.0240361
GCGGTTC1507.2795956E-917.99623728
AGACCGG750.001111615117.99623728
CGTATGC750.001111998717.99531244
TCGTATG750.001111998717.99531243
CGAGATC1802.0736479E-1017.4963415
CGGCTAA1752.6957423E-916.71079317