FastQCFastQC Report
Mon 6 Jun 2016
ERR1379222.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379222.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504133
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGAAA207.030506E-444.99871434
CGACCGA207.030506E-444.99871432
CGTATGC352.8153398E-432.1483144
CTCGTAT352.8169792E-432.14512642
TCTCGTA300.00514277530.00211741
ATCTCGT300.0051452729.9991440
GACCGAC300.0051452729.9991429
GACCGAA300.0051452729.9991433
CCGACCG300.0051452729.9991431
CCGAAAT300.0051452729.9991435
TCGTATG500.002261932222.50158743
CGTTGGA850.002561280515.8834725
CGCCCGG850.002562976415.88189813
CGGCTAA1150.001200398913.6952617
CCGGCTA1250.00224896912.59963916
TATCTTC4350.011.897394
GCCCGGC1600.001106276611.24967914
CCCGGCT1400.00525031511.24967815
ATATCTT4700.011.01141553
GAAACTT3703.5470293E-1010.94563239