Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378993.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1209914 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5966 | 0.49309289751172397 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGACAATCTCGTATGCCGTC | 3300 | 0.27274665802693415 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GATCGGA | 805 | 0.0 | 36.053818 | 26 |
| ATCGGAA | 815 | 0.0 | 35.611435 | 27 |
| TCGGAAG | 840 | 0.0 | 35.3551 | 28 |
| TATGCCG | 345 | 0.0 | 33.915287 | 43 |
| AGATCGG | 860 | 0.0 | 33.748047 | 25 |
| AATGCCG | 1260 | 0.0 | 33.748047 | 18 |
| ATGCCGA | 1260 | 0.0 | 33.390923 | 19 |
| TGCCGAG | 1305 | 0.0 | 32.239513 | 20 |
| CCGAGAT | 930 | 0.0 | 31.20787 | 22 |
| CGGAAGA | 955 | 0.0 | 31.097677 | 29 |
| CGAGATC | 955 | 0.0 | 30.626501 | 23 |
| TGCCGTC | 375 | 0.0 | 30.602024 | 45 |
| CGCAGAC | 405 | 0.0 | 30.553785 | 29 |
| ATGCCGT | 380 | 0.0 | 30.199366 | 44 |
| CCGCAGA | 390 | 0.0 | 29.998262 | 28 |
| GCCGAGA | 1380 | 0.0 | 29.83523 | 21 |
| CGTATGC | 400 | 0.0 | 29.81324 | 41 |
| GAATGCC | 1445 | 0.0 | 29.427362 | 17 |
| AGACCGC | 400 | 0.0 | 29.24831 | 25 |
| GAGATCG | 1020 | 0.0 | 28.674812 | 24 |