Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379196.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 368182 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTATTATCTCGTATGCC | 996 | 0.2705183849291926 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 165 | 0.0 | 43.633995 | 41 |
| CCGCGTA | 165 | 0.0 | 43.633995 | 31 |
| CGCGTAT | 165 | 0.0 | 43.633995 | 32 |
| CGTATTA | 170 | 0.0 | 42.35064 | 34 |
| CGTATGC | 170 | 0.0 | 42.35064 | 44 |
| CTCGTAT | 170 | 0.0 | 42.35064 | 42 |
| TATCTCG | 170 | 0.0 | 42.35064 | 39 |
| GCGTATT | 170 | 0.0 | 42.35064 | 33 |
| ACCGCGT | 165 | 0.0 | 42.27043 | 30 |
| ATCTCGT | 180 | 0.0 | 39.997826 | 40 |
| TCGTATG | 180 | 0.0 | 39.997826 | 43 |
| GCGGTTC | 185 | 0.0 | 38.922092 | 8 |
| GACCGCG | 180 | 0.0 | 38.747894 | 29 |
| GAGACCG | 180 | 0.0 | 38.747894 | 27 |
| CGGAAGA | 170 | 0.0 | 38.395912 | 1 |
| AGAGCGG | 190 | 0.0 | 37.902973 | 5 |
| GAGCGGT | 190 | 0.0 | 37.897827 | 6 |
| AGACCGC | 185 | 0.0 | 37.700657 | 28 |
| CGGTTCA | 200 | 0.0 | 37.122982 | 9 |
| GTATGCC | 195 | 0.0 | 36.92107 | 45 |