Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379002.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 821393 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6579 | 0.8009564240260144 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAGAATCTCGTATGCCGTC | 4345 | 0.5289794288483102 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAGAATCTCGTATGCC | 1125 | 0.136962452808826 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1009 | 0.12284010211920482 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 515 | 0.0 | 36.264984 | 43 |
| ATGCCGT | 515 | 0.0 | 36.264984 | 44 |
| TGCCGTC | 540 | 0.0 | 34.58605 | 45 |
| ATCGGAA | 730 | 0.0 | 33.90264 | 27 |
| GATCGGA | 745 | 0.0 | 33.22004 | 26 |
| TCGGAAG | 760 | 0.0 | 33.15646 | 28 |
| AGATCGG | 765 | 0.0 | 32.645645 | 25 |
| CCGTCGA | 590 | 0.0 | 31.651173 | 28 |
| AATGCCG | 1395 | 0.0 | 31.450253 | 18 |
| CGTATGC | 595 | 0.0 | 31.387106 | 41 |
| CTCGTAT | 595 | 0.0 | 31.385197 | 39 |
| AGACCGT | 585 | 0.0 | 31.152498 | 25 |
| CGAGAAT | 600 | 0.0 | 31.123652 | 32 |
| GACCGTC | 595 | 0.0 | 31.007061 | 26 |
| TCTCGTA | 605 | 0.0 | 30.866432 | 38 |
| ACCGTCG | 605 | 0.0 | 30.866432 | 27 |
| TGCCGAG | 1430 | 0.0 | 30.837826 | 20 |
| GTCGAGA | 615 | 0.0 | 30.730377 | 30 |
| GTATGCC | 615 | 0.0 | 30.368238 | 42 |
| ATGCCGA | 1445 | 0.0 | 30.362007 | 19 |