FastQCFastQC Report
Mon 6 Jun 2016
ERR1378588.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378588.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences819283
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA37740.4606466874083803No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA29190.35628714375862797No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG4500.042.9953913
CGTCATA4600.041.57163224
ACGTCAT4650.041.12462623
AGCCGAT4750.040.7324815
GCCGATG4750.040.7324816
GATGACG4850.039.8926319
CGATGAC4850.039.8926318
TTCGGTA3450.039.77834722
CCGATGA4900.039.48556517
GACGTCA4850.039.42876422
TATGCCG800.039.3707843
TGACGTC4950.039.08672321
GCGGTCT3400.039.03993636
AAGCCGA5000.038.69585414
ATGACGT5000.038.69585420
AATTCGG3650.038.2150820
TCGGGGA3600.038.12091414
CGGTATT3600.038.12091424
CTCGGGG3200.037.96468413
GGCGGTC3500.037.92450735