Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378849.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 592948 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2564 | 0.4324156587086895 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCAACTATCTCGTATGCC | 2071 | 0.3492717742533915 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCAACTATCTCGTATGCCGTC | 1983 | 0.33443067520254727 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 340 | 0.0 | 36.386967 | 44 |
| ACCCGGT | 25 | 0.0021082838 | 35.99305 | 23 |
| TATGCCG | 350 | 0.0 | 35.347336 | 43 |
| ATCGGAA | 340 | 0.0 | 33.740643 | 27 |
| TGCCGTC | 380 | 0.0 | 33.148697 | 45 |
| GATCGGA | 360 | 0.0 | 31.866158 | 26 |
| AGATCGG | 365 | 0.0 | 31.432287 | 25 |
| CCGAGAT | 395 | 0.0 | 29.614536 | 22 |
| TCGGAAG | 395 | 0.0 | 29.61204 | 28 |
| AATGCCG | 950 | 0.0 | 25.80863 | 18 |
| CGAGATC | 455 | 0.0 | 25.70932 | 23 |
| GAGATCG | 460 | 0.0 | 25.429873 | 24 |
| TGCCGAG | 975 | 0.0 | 25.14899 | 20 |
| GCCGAGA | 985 | 0.0 | 24.893671 | 21 |
| GAATGCC | 995 | 0.0 | 24.641405 | 17 |
| ATGCCGA | 1005 | 0.0 | 24.398275 | 19 |
| TCTCGTA | 530 | 0.0 | 24.193441 | 38 |
| GGAATGC | 1015 | 0.0 | 24.15586 | 16 |
| CTCGTAT | 530 | 0.0 | 23.768995 | 39 |
| TATCTCG | 535 | 0.0 | 23.546854 | 36 |