FastQCFastQC Report
Mon 6 Jun 2016
ERR1378802.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378802.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences865061
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGATTATCTCGTATGCCGTC21430.2477281948903025Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGATTATCTCGTATGCC19440.224724036802029Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2850.040.25865643
TGCCGTC3050.038.3563745
ATGCCGT3250.035.3037544
GGCGGAT300.00514937529.99664923
TAATCGG450.001227108624.99720620
CCGTCGA5150.022.27906228
CGTCGAT5150.022.27906229
GTCGATT5200.022.06484230
CTCGTAT5200.022.06484239
GACCGTC5350.021.86671426
ACCGTCG5250.021.854727
CGGAAGA4850.021.8218671
TATCTCG5300.021.64852536
TCTCGTA5300.021.64852538
GAGACCG5450.021.4654924
TCGATTA5350.021.446231
CGTATGC5400.021.24762741
TCGTATG5400.021.24762740
CGATTAT5450.021.05269232
AATGCCG7550.020.85859718