Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378616.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 606663 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2892 | 0.4767061778944818 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2042 | 0.3365954409614564 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGACTAGATCTCGTATGCCGTC | 624 | 0.10285776452495043 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCGGTCT | 295 | 0.0 | 44.234695 | 36 |
| TAAGCCG | 370 | 0.0 | 43.781216 | 13 |
| TTCGGTA | 305 | 0.0 | 43.52204 | 22 |
| ATTCGGT | 315 | 0.0 | 42.85463 | 21 |
| TCGGTAT | 310 | 0.0 | 42.820072 | 23 |
| CGATGAC | 385 | 0.0 | 42.659836 | 18 |
| CCTCGGG | 260 | 0.0 | 42.40136 | 12 |
| CGTCATA | 385 | 0.0 | 42.075455 | 24 |
| AAGCCGA | 395 | 0.0 | 41.57984 | 14 |
| CCGATGA | 390 | 0.0 | 41.536026 | 17 |
| AATTCGG | 325 | 0.0 | 41.536026 | 20 |
| CGGTATT | 320 | 0.0 | 41.481945 | 24 |
| GGCGGTC | 315 | 0.0 | 41.426144 | 35 |
| TGACGTC | 395 | 0.0 | 41.010254 | 21 |
| GAATTCG | 330 | 0.0 | 40.906693 | 19 |
| GATGACG | 410 | 0.0 | 40.607376 | 19 |
| AGCCGAT | 400 | 0.0 | 40.497623 | 15 |
| TCGGGGA | 330 | 0.0 | 40.224915 | 14 |
| GACGTCA | 405 | 0.0 | 39.997658 | 22 |
| GCCGATG | 405 | 0.0 | 39.997658 | 16 |