FastQCFastQC Report
Mon 6 Jun 2016
ERR1379234.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379234.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences722783
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGTGT250.002104144836.008532
TCGTATG352.8188652E-432.14379543
ATGCCGA352.8200098E-432.1415722
ACCGGGC300.005147014729.99880220
GCGGTTC406.1653514E-428.1238778
AGACCGT406.1653514E-428.12387728
ATCTCGT507.1567294E-526.99892240
AGAGCGG450.001225410825.002465
GAGACCG500.00226432822.49910227
TGCCGAG602.466947E-422.49910223
AGCGGTT550.003936057420.4537287
GAGCGGT550.003936057420.4537286
GACCGTG600.006509714318.7492529
CGGTTCA600.006509714318.749259
CCGAGAC600.006509714318.7492525
CGTGAGC1602.9482726E-715.4734851
CACCACG1901.3301178E-714.2099588
ACCACGC1605.0220297E-614.0619389
CGCCTGG1150.001201384613.69510613
CCACGCC1555.8061567E-513.06399410