Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378965.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1149275 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3539 | 0.30793326227404233 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACTACTATCTCGTATGCCGTC | 2808 | 0.24432794587892367 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 305 | 0.0 | 36.88396 | 43 |
| TGCCGTC | 350 | 0.0 | 32.784573 | 45 |
| GATCGGA | 560 | 0.0 | 31.338196 | 26 |
| CCGACTA | 365 | 0.0 | 30.820845 | 28 |
| ATCGGAA | 565 | 0.0 | 30.66265 | 27 |
| ATGCCGT | 375 | 0.0 | 30.598938 | 44 |
| CGACTAC | 370 | 0.0 | 30.404346 | 29 |
| ACCGACT | 385 | 0.0 | 29.804157 | 27 |
| AGATCGG | 590 | 0.0 | 29.363384 | 25 |
| TCGGAAG | 615 | 0.0 | 29.267275 | 28 |
| CGTATGC | 390 | 0.0 | 28.845152 | 41 |
| GACCGAC | 400 | 0.0 | 28.6865 | 26 |
| AGACCGA | 400 | 0.0 | 28.6865 | 25 |
| AATGCCG | 1015 | 0.0 | 28.593819 | 18 |
| TCGTATG | 405 | 0.0 | 28.33235 | 40 |
| TGCCGAG | 1035 | 0.0 | 28.04128 | 20 |
| CTCGTAT | 395 | 0.0 | 27.910421 | 39 |
| ATGCCGA | 1060 | 0.0 | 27.37993 | 19 |
| GAGACCG | 420 | 0.0 | 27.320478 | 24 |
| CGGAAGA | 660 | 0.0 | 27.27178 | 29 |