Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379366.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 580286 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATAGATCTCGTATGCC | 1555 | 0.2679713106985176 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 180 | 0.0 | 39.998695 | 41 |
| CGTATGC | 175 | 0.0 | 39.855843 | 44 |
| CGGCATA | 180 | 0.0 | 38.748737 | 32 |
| CTCGTAT | 185 | 0.0 | 37.701473 | 42 |
| CCGGCAT | 190 | 0.0 | 36.709335 | 31 |
| ATCTCGT | 195 | 0.0 | 35.768063 | 40 |
| TCGTATG | 195 | 0.0 | 35.768063 | 43 |
| GGCATAG | 210 | 0.0 | 33.213203 | 33 |
| GCATAGA | 210 | 0.0 | 33.213203 | 34 |
| GAGCGGT | 220 | 0.0 | 32.729027 | 6 |
| ACCGGCA | 215 | 0.0 | 32.440804 | 30 |
| GAGACCG | 220 | 0.0 | 31.703514 | 27 |
| CGGTTCA | 235 | 0.0 | 31.594717 | 9 |
| AGAGCGG | 230 | 0.0 | 31.311422 | 5 |
| AGACCGG | 225 | 0.0 | 30.998991 | 28 |
| GCGGTTC | 230 | 0.0 | 30.325098 | 8 |
| CCGAGAC | 230 | 0.0 | 30.325098 | 25 |
| GTATGCC | 250 | 0.0 | 29.699034 | 45 |
| GACCGGC | 235 | 0.0 | 29.679886 | 29 |
| ATAGATC | 240 | 0.0 | 29.061554 | 36 |