Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378689.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1029996 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACCTAATCTCGTATGCC | 1169 | 0.11349558639062676 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGTACC | 155 | 0.0 | 37.740307 | 31 |
| ACCGTAC | 150 | 0.0 | 37.49838 | 30 |
| CGTATGC | 155 | 0.0 | 36.290516 | 44 |
| GACCGTA | 155 | 0.0 | 36.288754 | 29 |
| CGTACCT | 165 | 0.0 | 34.089436 | 32 |
| ATCTCGT | 175 | 0.0 | 33.427128 | 40 |
| GAGCGGT | 190 | 0.0 | 33.169346 | 6 |
| AGACCGT | 185 | 0.0 | 32.836422 | 28 |
| GCGGTTC | 195 | 0.0 | 32.30473 | 8 |
| TCTCGTA | 175 | 0.0 | 32.141468 | 41 |
| GAGACCG | 185 | 0.0 | 31.620256 | 27 |
| AATGCCG | 190 | 0.0 | 30.78665 | 21 |
| CTCGTAT | 185 | 0.0 | 30.404093 | 42 |
| TCGTATG | 195 | 0.0 | 29.998705 | 43 |
| AGCGGTT | 210 | 0.0 | 29.99725 | 7 |
| ATGCCGA | 195 | 0.0 | 29.997248 | 22 |
| CCGAGAC | 190 | 0.0 | 29.603987 | 25 |
| AGAGCGG | 215 | 0.0 | 29.312447 | 5 |
| CGGAAGA | 230 | 0.0 | 28.384876 | 1 |
| CGGTTCA | 215 | 0.0 | 28.253223 | 9 |