Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379193.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 443158 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGATTATCTCGTATGCC | 1575 | 0.3554037160561244 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGCT | 210 | 0.0 | 43.927032 | 29 |
| CGTATGC | 205 | 0.0 | 43.900898 | 44 |
| GCGGTTC | 210 | 0.0 | 42.860477 | 8 |
| CGCTGAT | 210 | 0.0 | 42.85564 | 32 |
| GAGACCG | 210 | 0.0 | 42.85564 | 27 |
| TATCTCG | 210 | 0.0 | 42.85564 | 39 |
| CTCGTAT | 215 | 0.0 | 41.858994 | 42 |
| ACCGCTG | 215 | 0.0 | 41.858994 | 30 |
| AGACCGC | 215 | 0.0 | 41.858994 | 28 |
| AGAGCGG | 220 | 0.0 | 40.91689 | 5 |
| AGCGGTT | 220 | 0.0 | 40.91227 | 7 |
| CGGTTCA | 220 | 0.0 | 40.907654 | 9 |
| CCGCTGA | 220 | 0.0 | 40.907654 | 31 |
| TCTCGTA | 220 | 0.0 | 40.907654 | 41 |
| TCGTATG | 220 | 0.0 | 40.907654 | 43 |
| CCGAGAC | 230 | 0.0 | 40.107285 | 25 |
| GAGCGGT | 225 | 0.0 | 40.00311 | 6 |
| CGGAAGA | 240 | 0.0 | 39.382507 | 1 |
| ATCTCGT | 230 | 0.0 | 39.12906 | 40 |
| AAGAGCG | 240 | 0.0 | 38.444828 | 4 |