FastQCFastQC Report
Mon 6 Jun 2016
ERR1379123.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379123.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1185819
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAGAATCTCGTATGCCGTC27540.23224454996926175Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAGAATCTCGTATGCC21860.18434516566187586Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3600.035.61912543
ATGCCGT4150.030.35643844
TGCCGTC4450.028.30993845
TCGTATG5600.023.29972640
CGGCTAG5800.022.88415729
ACTAACG500.002266822822.4962911
CTCGTAT5900.022.11499439
CGTATGC5950.021.92915741
TCTCGTA6000.021.74641238
CGGAAGA5300.021.251591
AGACCGG6500.020.41970825
ATCTCGT6650.019.9616437
GAGCGGT8150.019.616193
GCGGTTC8050.019.5801545
AGCGGTT8250.019.3784184
GTATGCC6750.019.33014542
AAGAGCG8400.019.3085861
AGAGCGG8350.019.152812
ACCGGCT6950.019.09756927
CGGTTCA8150.019.0628176