Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378852.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 975262 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1998 | 0.20486802520758526 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTACAATCTCGTATGCCGTC | 1862 | 0.19092305452278463 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTACAATCTCGTATGCC | 1006 | 0.10315176844786324 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 240 | 0.0 | 33.74723 | 43 |
| GATCGGA | 330 | 0.0 | 31.35624 | 26 |
| ATCGGAA | 340 | 0.0 | 31.095604 | 27 |
| ATGCCGT | 275 | 0.0 | 31.088356 | 44 |
| TCGGAAG | 350 | 0.0 | 30.211807 | 28 |
| TGCCGTC | 285 | 0.0 | 29.997541 | 45 |
| AGATCGG | 360 | 0.0 | 28.74764 | 25 |
| AATGCCG | 675 | 0.0 | 28.326653 | 18 |
| ATGCCGA | 685 | 0.0 | 27.917416 | 19 |
| TCGTATG | 300 | 0.0 | 26.997784 | 40 |
| CGCTTAC | 310 | 0.0 | 26.852636 | 29 |
| TGCCGAG | 725 | 0.0 | 26.687466 | 20 |
| CCGCTTA | 315 | 0.0 | 26.426403 | 28 |
| CGTATGC | 310 | 0.0 | 26.126888 | 41 |
| CTCGTAT | 305 | 0.0 | 25.817554 | 39 |
| GAATGCC | 760 | 0.0 | 25.158539 | 17 |
| TCTCGTA | 325 | 0.0 | 24.919756 | 38 |
| ACCGCTT | 355 | 0.0 | 23.445173 | 27 |
| GTATGCC | 360 | 0.0 | 23.123102 | 42 |
| GACCGCT | 365 | 0.0 | 22.802841 | 26 |