FastQCFastQC Report
Mon 6 Jun 2016
ERR1378845.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378845.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences692336
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT30530.4409708580804696Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATTACATCTCGTATGCCGTC28120.4061611702988145Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATTACATCTCGTATGCC17230.24886760185805737Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3150.037.13546443
GCGTATA250.002108589335.99283622
ATGCCGT3350.034.24691444
TGCCGTC3450.033.90629245
GATCGGA4650.031.44535326
ATCGGAA4650.031.44535327
TCGGAAG4800.030.93134128
AGATCGG4750.030.30975725
AATGCCG9700.028.05939918
CCGAGAT5350.027.75148622
TGCCGAG10100.026.72735420
ATGCCGA10350.026.29911219
GCCGAGA10200.026.02423121
GAATGCC10500.025.92153717
TCGTATG4550.025.21476240
TCTCGTA4600.024.9406938
CTCGTAT4550.024.72035439
CGTATGC4700.024.41003441
CGCATTA4800.024.37014829
AGACCGC4800.024.37014825