FastQCFastQC Report
Mon 6 Jun 2016
ERR1378980.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378980.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences811507
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT70540.8692469689109275Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACAGATCTCGTATGCCGTC42090.5186646572364749Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACAGATCTCGTATGCC19860.24472986677872158Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC8720.10745440273466525Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG5250.038.14818243
ATGCCGT5300.037.3637144
TCGGAAG10200.035.2903528
AGATCGG10200.035.06978625
TGCCGTC5650.035.04914545
GATCGGA10100.034.9715126
ATCGGAA10150.034.57758327
CCGAGAT10550.033.69308522
GAGATCG10650.033.37671724
CGAGATC10900.032.40479323
AATGCCG18900.029.99679818
TGCCGAG19450.028.91722120
ATGCCGA19650.028.8518819
GCCGAGA19550.028.42407621
GAATGCC20100.028.20594417
CGGAAGA12850.028.01257329
GGAATGC20450.027.72320216
GACCGTG7500.026.69714726
CTCGTAT7650.026.47265439
CGTATGC7700.026.30075541