FastQCFastQC Report
Mon 6 Jun 2016
ERR1378661.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378661.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1776325
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT1650.034.08909642
TCTCGTA1600.033.74820741
CGCATTA1700.031.7639132
CGTATGC1800.031.24833944
TCGTATG2050.029.63257243
AGACCGC2050.026.34080528
GAGCGGT2200.024.551756
AGAGCGG2250.024.0061575
ATCTCGT2300.023.47767440
GCGGTTC2300.023.476358
AGCGGTT2400.023.4355957
GACCGCA2500.022.49943729
ACCGCAT2400.022.49943530
CGGTTCA2500.022.498179
GAGACCG2650.022.07367527
CCGCATT2500.021.59945931
AAGAGCG2600.020.7745594
CCGAGAC2650.020.37627425
AATGCCG2550.020.29303721
CATCTCG2750.019.63587239