Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378866.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 863103 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2689 | 0.31155030164418385 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTATGATCTCGTATGCC | 2500 | 0.28965256753828916 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTATGATCTCGTATGCCGTC | 2202 | 0.2551259814877251 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 325 | 0.0 | 35.302055 | 45 |
| TATGCCG | 320 | 0.0 | 33.74461 | 43 |
| ATGCCGT | 335 | 0.0 | 32.233658 | 44 |
| GATCGGA | 360 | 0.0 | 28.743746 | 26 |
| ATCGGAA | 375 | 0.0 | 26.994127 | 27 |
| AGATCGG | 390 | 0.0 | 26.534224 | 25 |
| TCGGAAG | 450 | 0.0 | 25.99434 | 28 |
| GTCGGAA | 60 | 2.4704542E-4 | 22.495104 | 27 |
| AATGCCG | 1040 | 0.0 | 21.846207 | 18 |
| GAGATCG | 500 | 0.0 | 21.146624 | 24 |
| TGCCGAG | 1055 | 0.0 | 21.110374 | 20 |
| AGGTCGG | 75 | 4.6065907E-5 | 20.996647 | 25 |
| GGTCGGA | 75 | 4.6086476E-5 | 20.99543 | 26 |
| CCGAGAT | 495 | 0.0 | 20.905754 | 22 |
| ATGCCGA | 1080 | 0.0 | 20.830008 | 19 |
| TCGTATG | 575 | 0.0 | 19.953335 | 43 |
| CTCGTAT | 565 | 0.0 | 19.908325 | 42 |
| TCTCGTA | 565 | 0.0 | 19.908325 | 41 |
| CCGCTTA | 590 | 0.0 | 19.827343 | 31 |
| CGCTTAT | 590 | 0.0 | 19.827343 | 32 |