Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378989.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1055389 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5303 | 0.5024687579650726 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGACTAGATCTCGTATGCCGTC | 2711 | 0.25687211066251403 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACTAGATCTCGTATGCC | 1516 | 0.1436437180982557 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATCGGAA | 755 | 0.0 | 33.6739 | 27 |
| GATCGGA | 770 | 0.0 | 33.017914 | 26 |
| AGATCGG | 785 | 0.0 | 32.67361 | 25 |
| TATGCCG | 310 | 0.0 | 32.662838 | 43 |
| TCGGAAG | 800 | 0.0 | 32.34222 | 28 |
| ATGCCGT | 350 | 0.0 | 28.929943 | 44 |
| ATGCCGA | 1305 | 0.0 | 27.931034 | 19 |
| AATGCCG | 1310 | 0.0 | 27.652672 | 18 |
| TGCCGAG | 1340 | 0.0 | 27.200203 | 20 |
| CCGAGAT | 970 | 0.0 | 26.905941 | 22 |
| CGGAAGA | 965 | 0.0 | 26.8122 | 29 |
| GAGATCG | 965 | 0.0 | 26.8122 | 24 |
| TGCCGTC | 390 | 0.0 | 25.962769 | 45 |
| GAATGCC | 1415 | 0.0 | 25.918728 | 17 |
| CGGACTA | 415 | 0.0 | 24.938578 | 29 |
| GCCGAGA | 1460 | 0.0 | 24.656366 | 21 |
| CGAGATC | 1040 | 0.0 | 24.445957 | 23 |
| ACCGGAC | 435 | 0.0 | 24.309193 | 27 |
| CCGGACT | 430 | 0.0 | 24.068628 | 28 |
| GACCGGA | 435 | 0.0 | 23.791977 | 26 |