Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379020.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1267787 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4934 | 0.38918209446855034 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATTGAAATCTCGTATGCCGTC | 2696 | 0.21265401838005912 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 375 | 0.0 | 37.804176 | 43 |
| GATCGGA | 635 | 0.0 | 34.368454 | 26 |
| ATCGGAA | 640 | 0.0 | 34.09995 | 27 |
| TCGGAAG | 655 | 0.0 | 33.66253 | 28 |
| AGATCGG | 675 | 0.0 | 32.331806 | 25 |
| AATGCCG | 1130 | 0.0 | 31.858154 | 18 |
| ATGCCGT | 455 | 0.0 | 31.157288 | 44 |
| TGCCGAG | 1180 | 0.0 | 30.88837 | 20 |
| TGCCGTC | 465 | 0.0 | 30.487238 | 45 |
| GACCGAT | 470 | 0.0 | 30.15815 | 26 |
| ACCGATT | 470 | 0.0 | 30.15815 | 27 |
| ATGCCGA | 1200 | 0.0 | 29.999763 | 19 |
| CCGATTG | 485 | 0.0 | 29.225422 | 28 |
| CGGAAGA | 765 | 0.0 | 28.822166 | 29 |
| GCCGAGA | 1255 | 0.0 | 28.683903 | 21 |
| CGTATGC | 505 | 0.0 | 28.07019 | 41 |
| CTCGTAT | 515 | 0.0 | 27.959843 | 39 |
| CCGAGAT | 790 | 0.0 | 27.910072 | 22 |
| TCGTATG | 520 | 0.0 | 27.690998 | 40 |
| AGACCGA | 520 | 0.0 | 27.258326 | 25 |