Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379389.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 599002 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACATGATCTCGTATGCC | 1079 | 0.18013295448095332 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATCTCGT | 140 | 0.0 | 40.17805 | 40 |
| ACCGGAC | 135 | 0.0 | 39.99948 | 30 |
| CCGGACA | 135 | 0.0 | 39.99948 | 31 |
| CTCGTAT | 140 | 0.0 | 38.570927 | 42 |
| GACCGGA | 140 | 0.0 | 38.570927 | 29 |
| TCGTATG | 140 | 0.0 | 38.570927 | 43 |
| CGGACAT | 145 | 0.0 | 37.240894 | 32 |
| CGTATGC | 145 | 0.0 | 37.240894 | 44 |
| AGACCGG | 145 | 0.0 | 37.240894 | 28 |
| TGCGAAC | 25 | 0.0021055765 | 36.002537 | 4 |
| TCTCGTA | 150 | 0.0 | 35.99953 | 41 |
| GAGACCG | 165 | 0.0 | 32.72685 | 27 |
| GTATGCC | 170 | 0.0 | 31.764294 | 45 |
| AATGCCG | 175 | 0.0 | 30.85674 | 21 |
| CCGAGAC | 175 | 0.0 | 30.85674 | 25 |
| CGGAAGA | 180 | 0.0 | 30.004618 | 1 |
| AGGTCGT | 30 | 0.0051456406 | 29.999609 | 28 |
| AGAGCGG | 195 | 0.0 | 28.848186 | 5 |
| AGCGGTT | 195 | 0.0 | 27.691948 | 7 |
| TGCCGAG | 195 | 0.0 | 27.691948 | 23 |