Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379201.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 496551 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACCTAATCTCGTATGCC | 1789 | 0.36028524763820835 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTACCT | 220 | 0.0 | 42.953873 | 32 |
| CCGTACC | 225 | 0.0 | 41.999344 | 31 |
| ACCGTAC | 225 | 0.0 | 41.999344 | 30 |
| GACCGTA | 220 | 0.0 | 41.93116 | 29 |
| AGACCGT | 220 | 0.0 | 41.93116 | 28 |
| CTCGTAT | 230 | 0.0 | 41.08631 | 42 |
| TCTCGTA | 230 | 0.0 | 41.08631 | 41 |
| ATCTCGT | 235 | 0.0 | 40.21214 | 40 |
| CGTATGC | 235 | 0.0 | 40.21214 | 44 |
| TCGTATG | 235 | 0.0 | 40.21214 | 43 |
| CGGAAGA | 240 | 0.0 | 39.382313 | 1 |
| GTATGCC | 245 | 0.0 | 38.570824 | 45 |
| CGGTTCA | 250 | 0.0 | 37.799408 | 9 |
| GAGACCG | 245 | 0.0 | 37.652473 | 27 |
| CCGAGAC | 245 | 0.0 | 37.652473 | 25 |
| CGAGACC | 245 | 0.0 | 37.652473 | 26 |
| AATCTCG | 260 | 0.0 | 37.210957 | 39 |
| AAGAGCG | 255 | 0.0 | 37.061977 | 4 |
| GCGGTTC | 255 | 0.0 | 37.058243 | 8 |
| GAGCGGT | 260 | 0.0 | 36.349247 | 6 |