Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378876.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 902391 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3328 | 0.3687980044127213 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGTTATCTCGTATGCCGTC | 2383 | 0.26407621529913305 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGTTATCTCGTATGCC | 2008 | 0.2225199497778679 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 290 | 0.0 | 38.783504 | 43 |
| ATGCCGT | 290 | 0.0 | 38.00783 | 44 |
| TGCCGTC | 325 | 0.0 | 34.606815 | 45 |
| TTTACGC | 30 | 0.0051501193 | 29.9959 | 32 |
| GATCGGA | 465 | 0.0 | 29.508825 | 26 |
| ATCGGAA | 465 | 0.0 | 29.508825 | 27 |
| TCGGAAG | 475 | 0.0 | 28.415594 | 28 |
| AGATCGG | 500 | 0.0 | 27.444729 | 25 |
| AATGCCG | 1055 | 0.0 | 24.519997 | 18 |
| ATGCCGA | 1090 | 0.0 | 23.733973 | 19 |
| TGCCGAG | 1105 | 0.0 | 23.411793 | 20 |
| CCGAGAT | 610 | 0.0 | 23.23324 | 22 |
| CGTATGC | 485 | 0.0 | 23.190136 | 41 |
| ATCGTTA | 510 | 0.0 | 22.93804 | 31 |
| CGATCGT | 515 | 0.0 | 22.71408 | 29 |
| ACCGATC | 515 | 0.0 | 22.712822 | 27 |
| TCTCGTA | 515 | 0.0 | 22.712822 | 38 |
| CGAGATC | 615 | 0.0 | 22.678568 | 23 |
| GCCGAGA | 1140 | 0.0 | 22.49568 | 21 |
| CGTTATC | 525 | 0.0 | 22.28267 | 33 |