FastQCFastQC Report
Mon 6 Jun 2016
ERR1390593.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390593.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences321225
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA300.005144760529.99647141
TATCTCG406.1606325E-428.12169339
GTATATC901.862075E-417.49794236
ACTACAC950.00536905314.20885619
GAGCCAC2251.0230524E-612.0079354
ATCCACT2004.9561255E-511.2486768
GAATATC1450.006773116510.8692514
TATCTTC2759.799151E-710.6433974
ATATCTT2751.1322989E-59.8246743
TATCCAC2109.679596E-49.6417237
CCACTTG2352.5358718E-49.57334210
AGTGAGC2453.8518436E-49.18259243
ATCTTCA2350.00267802958.622725
CACTCCA2500.0047156918.09904817
TGAGCCA3155.273442E-47.8623383
AAATATC5005.2326504E-77.66341541
TCCACTT3257.4294576E-47.61448869
AATATCC3050.00333977477.3819275
AGAAACT3100.0039441537.257210338