Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378945.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1218909 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGAGAAATCTCGTATGCC | 10499 | 0.8613440379880697 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 5288 | 0.4338305812821137 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGCGAG | 1465 | 0.0 | 36.398617 | 31 |
| CGCGAGA | 1465 | 0.0 | 36.245037 | 32 |
| ACCGCGA | 1475 | 0.0 | 36.15185 | 30 |
| GACCGCG | 1485 | 0.0 | 35.908405 | 29 |
| CGTATGC | 1480 | 0.0 | 35.877693 | 44 |
| GCGAGAA | 1490 | 0.0 | 35.485897 | 33 |
| CTCGTAT | 1500 | 0.0 | 35.399323 | 42 |
| TCTCGTA | 1500 | 0.0 | 35.399323 | 41 |
| AGACCGC | 1505 | 0.0 | 35.281715 | 28 |
| ATCTCGT | 1510 | 0.0 | 35.01589 | 40 |
| TCGTATG | 1520 | 0.0 | 34.93354 | 43 |
| GAGACCG | 1550 | 0.0 | 34.257412 | 27 |
| CGAGAAA | 1550 | 0.0 | 33.967094 | 34 |
| AATCTCG | 1580 | 0.0 | 33.46455 | 39 |
| GTATGCC | 1595 | 0.0 | 33.290897 | 45 |
| AGATCGG | 805 | 0.0 | 33.26023 | 17 |
| GATCGGA | 835 | 0.0 | 32.065254 | 18 |
| ATCGGAA | 855 | 0.0 | 31.315191 | 19 |
| TCGGAAG | 875 | 0.0 | 30.85655 | 20 |
| CGAGACC | 1775 | 0.0 | 30.421953 | 26 |