Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378595.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1556833 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2965 | 0.19045074198709816 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2293 | 0.14728618933437307 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 380 | 0.0 | 39.668842 | 13 |
| CGTCATA | 395 | 0.0 | 38.163654 | 24 |
| AATTCGG | 320 | 0.0 | 37.966637 | 20 |
| TCGGTAT | 320 | 0.0 | 37.966637 | 23 |
| AGCCGAT | 395 | 0.0 | 37.592842 | 15 |
| TCGGGGA | 325 | 0.0 | 37.382534 | 14 |
| ATGACGT | 405 | 0.0 | 37.22015 | 20 |
| CCGATGA | 410 | 0.0 | 36.766247 | 17 |
| AAGCCGA | 415 | 0.0 | 36.32328 | 14 |
| TTCGGTA | 335 | 0.0 | 36.266636 | 22 |
| TGACGTC | 430 | 0.0 | 36.102642 | 21 |
| GGCGGTC | 340 | 0.0 | 35.734455 | 35 |
| GACGTCA | 435 | 0.0 | 35.170456 | 22 |
| GCCGATG | 430 | 0.0 | 34.532963 | 16 |
| ACGTCAT | 440 | 0.0 | 34.259457 | 23 |
| CGGTATT | 355 | 0.0 | 34.224545 | 24 |
| CGATGAC | 435 | 0.0 | 34.136032 | 18 |
| GCGGTCT | 360 | 0.0 | 33.749207 | 36 |
| GAATTCG | 365 | 0.0 | 33.285816 | 19 |
| ATTCGGT | 380 | 0.0 | 31.971903 | 21 |