Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378928.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 546714 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCCTTAATCTCGTATGCC | 9629 | 1.7612499405539277 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 5605 | 1.0252161093368743 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1211 | 0.22150521113415791 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATCTCGT | 1190 | 0.0 | 37.436516 | 40 |
| CTCGTAT | 1195 | 0.0 | 37.27988 | 42 |
| TCTCGTA | 1200 | 0.0 | 37.124546 | 41 |
| CGTATGC | 1225 | 0.0 | 36.3669 | 44 |
| TCGTATG | 1240 | 0.0 | 35.92698 | 43 |
| CGGCCTT | 1265 | 0.0 | 35.75055 | 32 |
| GACCGGC | 1265 | 0.0 | 35.572685 | 29 |
| GAGACCG | 1260 | 0.0 | 35.535282 | 27 |
| AATCTCG | 1255 | 0.0 | 35.497578 | 39 |
| GGCCTTA | 1285 | 0.0 | 35.369217 | 33 |
| ACCGGCC | 1280 | 0.0 | 35.155823 | 30 |
| AGACCGG | 1280 | 0.0 | 35.155823 | 28 |
| GTATGCC | 1260 | 0.0 | 34.999573 | 45 |
| CCGGCCT | 1295 | 0.0 | 34.922356 | 31 |
| TAATCTC | 1300 | 0.0 | 34.095737 | 38 |
| CGAGACC | 1330 | 0.0 | 34.003345 | 26 |
| GCCTTAA | 1340 | 0.0 | 33.917496 | 34 |
| CTTAATC | 1335 | 0.0 | 33.707455 | 36 |
| CCTTAAT | 1365 | 0.0 | 33.461132 | 35 |
| AGATCGG | 840 | 0.0 | 32.94603 | 17 |