Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378585.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 884170 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2803 | 0.3170204824863997 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2147 | 0.2428266057432394 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 325 | 0.0 | 42.22833 | 13 |
| CGTCATA | 325 | 0.0 | 42.22833 | 24 |
| AGCCGAT | 345 | 0.0 | 39.780308 | 15 |
| GATGACG | 360 | 0.0 | 39.372723 | 19 |
| CGATGAC | 355 | 0.0 | 39.293503 | 18 |
| GACGTCA | 350 | 0.0 | 39.21202 | 22 |
| ACGTCAT | 355 | 0.0 | 38.659737 | 23 |
| TTCGGTA | 355 | 0.0 | 38.659737 | 22 |
| AATTCGG | 360 | 0.0 | 38.122795 | 20 |
| TATGCCG | 95 | 0.0 | 37.892548 | 43 |
| ATGACGT | 365 | 0.0 | 37.600567 | 20 |
| CGGTATT | 365 | 0.0 | 37.600567 | 24 |
| TCGGTAT | 365 | 0.0 | 37.600567 | 23 |
| TGACGTC | 375 | 0.0 | 36.59788 | 21 |
| GCCGATG | 375 | 0.0 | 36.59788 | 16 |
| GAATTCG | 375 | 0.0 | 36.59788 | 19 |
| TCCTCGG | 335 | 0.0 | 36.26656 | 11 |
| GCGGTCT | 380 | 0.0 | 36.116333 | 36 |
| AAGCCGA | 380 | 0.0 | 36.116333 | 14 |
| CCGATGA | 385 | 0.0 | 35.64729 | 17 |