FastQCFastQC Report
Mon 6 Jun 2016
ERR1379086.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379086.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1015818
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTATAATCTCGTATGCC41740.41090037782358657Illumina Paired End PCR Primer 2 (97% over 34bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTATAATCTCGTATGCCGTC37360.3677824177165595Illumina Paired End PCR Primer 2 (96% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4450.036.90720743
ATGCCGT4950.033.17920344
TGCCGTC5000.032.84741245
AACCGCT450.001228076824.99433912
CGGAAGA8550.024.5055351
ACCGAGT9100.023.24221830
TCTCGTA9250.022.86306441
TCGTATG9250.022.86306443
CGAGTAT9300.022.74350232
CGTATGC9300.022.74014544
AGACCGA9350.022.6185428
CTCGTAT9450.022.3791942
GTATGCC9750.022.152145
GAGTATA10300.021.62770533
GACCGAG9800.021.3524629
AATCTCG10150.020.83579639
GAGACCG10100.020.7131327
ATCTCGT10350.020.43317440
CCGAGTA10400.020.12157831
GAAGAGC10850.019.7124963