FastQCFastQC Report
Mon 6 Jun 2016
ERR1379315.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379315.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487048
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTA551.1258635E-732.72585329
CGTAGGT551.1258635E-732.72585332
AGAGCGG602.408542E-730.0079445
GCGGTTC602.415054E-729.9987018
CCGTAGG602.415054E-729.99870131
GAGACCG602.415054E-729.99870127
AGACCGT602.415054E-729.99870128
ACCGTAG602.415054E-729.99870130
CTCGTAT702.8801878E-828.92731542
GAGCGGT654.861158E-727.6939496
ATCTCGT654.865524E-727.69110740
CGTATGC654.865524E-727.69110744
CGGTTCA654.865524E-727.6911079
AGCGGTT654.865524E-727.6911077
AAGAGCG709.26766E-725.7210924
ATGCCGA709.2925984E-725.7131722
TCGTATG751.694938E-623.9989643
TCGATCT602.4654003E-422.49902529
CCGAGAC802.970035E-622.49902525
CTCGATC500.002263320122.49902528