FastQCFastQC Report
Mon 6 Jun 2016
ERR1378964.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378964.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1091719
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT55320.5067237998056277Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACACTATCTCGTATGCCGTC32230.29522248857077693Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3900.038.08355343
ATGCCGT4150.035.78936444
TGCCGTC4250.034.9472645
ATCGGAA7800.034.61189727
TCGGAAG8100.034.16322328
AGATCGG7950.033.9588425
GATCGGA7950.033.9588426
GACCGTA4800.030.93438326
CTCGTAT4850.030.6210839
CGTACAC4850.030.61546929
CCGTACA4900.030.3030728
ACCGTAC4900.030.3030727
AATGCCG14150.030.04997418
TCTCGTA5000.029.7024538
CCGAGAT9050.029.58265522
TGCCGAG14450.029.426120
TATCTCG5050.029.40836536
CGGAAGA9550.028.97613729
ATGCCGA14700.028.92565519
TCGTATG5150.028.8373340