FastQCFastQC Report
Mon 6 Jun 2016
ERR1378956.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378956.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences707597
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT64500.9115358035718071Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTATAATCTCGTATGCCGTC33210.4693349463041816Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTATAATCTCGTATGCC19760.27925499966789Illumina Paired End PCR Primer 2 (97% over 34bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC8570.12111413700171142Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG5350.037.85143
ATGCCGT5550.036.48700344
TACCGCT250.002107877735.99542221
TGCCGTC5700.035.52681745
ATCGGAA9100.035.10790327
TCGGAAG9450.034.04569228
GATCGGA9500.033.8665126
AGATCGG9600.033.51373325
CGAGATC9900.032.72542623
GAGATCG10200.031.54233624
CCGAGAT10650.031.0545822
TCCGAAT300.005147358429.9983069
TGCTCCG300.005147358429.99830628
AATGCCG17900.029.66312818
TGCCGAG18050.029.28990220
ATGCCGA18150.029.25454119
CGTATGC7200.028.12539941
GAATGCC18900.028.09563417
CGGAAGA11550.027.85556829
CGAGTAT7300.027.73815729