FastQCFastQC Report
Mon 6 Jun 2016
ERR1390629.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390629.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1083353
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGTCG250.002109156535.9926938
TCTCGTA855.456968E-1231.75678841
TATCTCG1105.456968E-1226.58550839
TCTGGCG500.002267200522.4954335
AGACCGT1204.5292836E-1022.49439228
ATCTCGT1358.367351E-1121.66126640
CTCGTAT1257.548806E-1021.59461842
GAGACCG1257.548806E-1021.59461827
ACGCCCG654.2438268E-420.76501312
CGTGGAG1301.2314558E-920.76405532
CGTATGC1301.2314558E-920.76405544
TCGTATG1301.2314558E-920.76405543
ACTTCGT550.00394208120.44944823
CCGAGAC1452.2009772E-1020.16738725
ACCGTGG1503.45608E-1019.4951430
TTACACG600.006453896418.7782615
CTGTGCG600.006455619418.7773934
GACCGTG1454.785761E-918.61604929
CCGTGGA1454.785761E-918.61604931
CGCCCGG851.2066634E-418.52479413