Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378940.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1217816 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAAGATCTCGTATGCC | 14362 | 1.1793242985804095 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 7608 | 0.6247249173931037 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1742 | 0.14304295558606556 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGTCGA | 1830 | 0.0 | 39.71163 | 31 |
| CGTCGAA | 1825 | 0.0 | 39.697147 | 32 |
| GTCGAAG | 1845 | 0.0 | 39.266823 | 33 |
| TCTCGTA | 1790 | 0.0 | 38.83933 | 41 |
| TCGAAGA | 1885 | 0.0 | 38.0755 | 34 |
| CGTATGC | 1860 | 0.0 | 37.984013 | 44 |
| CTCGTAT | 1850 | 0.0 | 37.946087 | 42 |
| ACCGTCG | 1920 | 0.0 | 37.850147 | 30 |
| ATCTCGT | 1850 | 0.0 | 37.701294 | 40 |
| CGAAGAT | 1880 | 0.0 | 37.698055 | 35 |
| GACCGTC | 1935 | 0.0 | 37.673008 | 29 |
| AGACCGT | 1940 | 0.0 | 37.575916 | 28 |
| GAGACCG | 1955 | 0.0 | 37.28761 | 27 |
| GTATGCC | 1895 | 0.0 | 37.28246 | 45 |
| TCGTATG | 1895 | 0.0 | 37.04499 | 43 |
| GATCTCG | 2005 | 0.0 | 34.786728 | 39 |
| GAAGATC | 2050 | 0.0 | 34.242622 | 36 |
| CGAGACC | 2140 | 0.0 | 34.064144 | 26 |
| AGATCTC | 2115 | 0.0 | 32.764732 | 38 |
| AGATCGG | 1185 | 0.0 | 32.46714 | 17 |