FastQCFastQC Report
Mon 6 Jun 2016
ERR1379398.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379398.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1558689
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAAGATATCTCGTATGCC18090.11605907272072877Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTA2600.039.80681229
CTCGTAT2550.039.70500642
TCTCGTA2600.038.94144441
CGTATGC2750.036.81736844
CCGTAAG2900.036.4647131
ACCGTAA2900.035.68886630
TATCTCG2900.034.9130239
AGACCGT3000.034.49923728
GAGACCG3200.032.34303727
CGTAAGA3350.032.2380932
TCGTATG3150.032.14214743
GAGCGGT3350.030.8978126
GCGGTTC3400.030.4405068
AGCGGTT3400.030.4405067
AGAGCGG3500.030.2174955
CCGAGAC3500.029.57077625
AATGCCG3750.029.3993521
ATCTCGT3450.029.3471840
CGGTTCA3550.029.1542859
GTATGCC3650.028.35553745