Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379365.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 756880 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTGAGATCTCGTATGCC | 1837 | 0.24270690201881406 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 225 | 0.0 | 39.998707 | 42 |
| TCGTATG | 235 | 0.0 | 39.25405 | 43 |
| TCTCGTA | 230 | 0.0 | 39.129173 | 41 |
| CGTATGC | 235 | 0.0 | 38.296635 | 44 |
| CCGTGTG | 250 | 0.0 | 36.89881 | 31 |
| GACCGTG | 245 | 0.0 | 36.73351 | 29 |
| GAGACCG | 250 | 0.0 | 35.99884 | 27 |
| AAGAGCG | 255 | 0.0 | 35.299973 | 4 |
| AGACCGT | 255 | 0.0 | 35.292976 | 28 |
| CGTGTGA | 260 | 0.0 | 34.614265 | 32 |
| GCGGTTC | 265 | 0.0 | 33.961166 | 8 |
| CGGAAGA | 280 | 0.0 | 32.95625 | 1 |
| AGCGGTT | 280 | 0.0 | 32.945362 | 7 |
| GAGCGGT | 275 | 0.0 | 32.732704 | 6 |
| ATCTCGT | 275 | 0.0 | 32.726215 | 40 |
| GTATGCC | 280 | 0.0 | 32.14182 | 45 |
| CCGAGAC | 280 | 0.0 | 32.14182 | 25 |
| CGGTTCA | 285 | 0.0 | 31.577929 | 9 |
| ACCGTGT | 285 | 0.0 | 31.577929 | 30 |
| AGAGCGG | 290 | 0.0 | 31.039633 | 5 |