FastQCFastQC Report
Mon 6 Jun 2016
ERR1390617.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390617.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences263259
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT300.00514172829.998142
GACCGGT300.00514172829.998129
TCTCGTA300.00514172829.998141
AACCCCT450.001224495424.99841710
AGCGGTT450.001224495424.9984177
CCGTCTC651.50312735E-524.261491
ATCTTCG500.002255853522.5071245
GCGGTTC500.002260841422.4985758
CGGAAGA550.00389986520.480481
CAACGAA550.003930045320.453257
GAGCGGT550.003930045320.453256
GATGATC550.003930045320.4532536
TCCAACG600.006485607518.7559385
AGAGCGG600.006485607518.7559385
CGGTTCA600.006499854418.7488149
CGTTTCC750.00109775618.0228231
TATCTTC2750.017.187264
ACTAGAC1257.586037E-616.19897719
GTCTCGA850.00255272415.8873834
ATATCTT3100.015.2467623