FastQCFastQC Report
Mon 6 Jun 2016
ERR1378607.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378607.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences701846
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA35060.4995397850810577No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA26040.37102156313493273No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG3850.043.24415213
CGATGAC4000.041.62249818
AAGCCGA4050.041.1086414
GACGTCA4150.040.1180722
CGTCATA4200.039.64047224
GCCGATG4250.039.1741116
CCGATGA4350.038.7907717
TTCGGTA3500.038.56910722
TTCCTCG3000.038.247710
ATTCGGT3550.038.02588321
CGGTATT3500.037.9262924
TCGGTAT3500.037.9262923
AGCCGAT4450.037.91906715
TGACGTC4400.037.83863421
ATGACGT4400.037.83863420
AATTCGG3600.037.49774620
ACGTCAT4500.037.4977423
GGCGGTC3650.036.98407735
GATGACG4550.036.59120619
AGGCGGT3850.035.06282434