FastQCFastQC Report
Mon 6 Jun 2016
ERR1390637.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390637.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534959
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC5410.1011292454188078Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG653.6743586E-1034.6080543
CGTATGC751.7025741E-929.99364344
CTCGTAT751.7025741E-929.99364342
GATCGGA952.3646862E-1128.41503318
GAGACCG803.3942342E-928.11904327
ACCGTGG803.3942342E-928.11904330
AATCTCG856.4737833E-926.46745339
ATCTCGT856.4792403E-926.4649840
CCGTGGT856.4792403E-926.4649831
AGACCGT856.4792403E-926.4649828
TCGGAAG1058.54925E-1125.70883820
TCTCGTA901.1907105E-824.99470341
AGATCGG1101.5097612E-1024.54025517
ATCGGAA1101.5097612E-1024.54025519
GACCGTG952.114757E-823.67919329
GTATGCC952.114757E-823.67919345
TCTGCGA602.442223E-422.5310342
GAGATCG1204.5110937E-1022.49523216
CGAGATC1257.512426E-1021.59542515
CCGAGAC1656.002665E-1119.08686445