FastQCFastQC Report
Mon 6 Jun 2016
ERR1379199.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379199.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406480
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACTTATCTCGTATGCC15110.37172800629797287Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT1550.042.0956236
CTCGTAT1500.041.9988542
TCTCGTA1550.040.6440541
AATGCCG1500.040.49889421
GCGGTTC1650.039.544378
CGTATGC1600.039.37392444
CGGAAGA1700.038.3954731
AGAGCGG1700.038.3860245
CGGTTCA1700.038.3813069
AGCGGTT1700.038.3813067
TATCTCG1650.038.1807739
AAGAGCG1800.037.50824
TCGTATG1700.037.0578143
CCGAGAC1650.036.81717325
ATCTCGT1750.035.99901640
CGTGACT1750.035.99901632
CCGTGAC1750.035.99901631
ACCGTGA1750.035.99901630
TGCCGAG1700.035.73431823
AGACCGT1800.034.99904328