Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378961.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 545889 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6325 | 1.158660460276723 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACTACATCTCGTATGCCGTC | 3884 | 0.7114999569509552 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACTACATCTCGTATGCC | 2720 | 0.49826979477512834 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 774 | 0.14178706660145196 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 455 | 0.0 | 42.532326 | 43 |
| TGCCGTC | 495 | 0.0 | 40.00823 | 45 |
| ATGCCGT | 495 | 0.0 | 40.00456 | 44 |
| GATCGGA | 845 | 0.0 | 36.20719 | 26 |
| AGATCGG | 855 | 0.0 | 35.78372 | 25 |
| ATCGGAA | 855 | 0.0 | 35.520603 | 27 |
| CCGAGAT | 865 | 0.0 | 35.10996 | 22 |
| CGAGATC | 865 | 0.0 | 35.10996 | 23 |
| TCGGAAG | 895 | 0.0 | 34.687157 | 28 |
| GAGATCG | 945 | 0.0 | 32.375744 | 24 |
| ATGCCGA | 1715 | 0.0 | 29.645378 | 19 |
| AATGCCG | 1720 | 0.0 | 29.5592 | 18 |
| TGCCGAG | 1755 | 0.0 | 28.969698 | 20 |
| GAATGCC | 1790 | 0.0 | 28.277575 | 17 |
| GCCGAGA | 1770 | 0.0 | 28.215801 | 21 |
| GGAATGC | 1885 | 0.0 | 27.091135 | 16 |
| CGGAAGA | 1175 | 0.0 | 26.421284 | 29 |
| AGGAATG | 2005 | 0.0 | 25.469719 | 15 |
| CTCGTAT | 795 | 0.0 | 24.620935 | 39 |
| CCGTACT | 800 | 0.0 | 24.464815 | 28 |