FastQCFastQC Report
Mon 6 Jun 2016
ERR1378911.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378911.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences806891
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCTGGATCTCGTATGCC83111.0300028132672194Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC45180.5599269294117794Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT9160.11352214859256082Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA10150.038.12692641
CCGTGCT10700.037.42877231
CGTGCTG10700.037.218532
CTCGTAT10500.037.07030542
ATCTCGT10500.036.85602640
CGTATGC10750.036.62679744
TCGTATG10650.036.5481943
GAGACCG11100.036.2826827
AGACCGT11100.036.2826828
GACCGTG11100.036.07998729
GTATGCC11050.035.4287945
TGGATCT11450.034.38760437
ACCGTGC11650.034.3766430
GGATCTC11450.033.79810338
AGATCGG6200.033.7489817
GATCTCG11500.033.65115439
GCTGGAT11750.033.3181435
CGAGACC12500.032.39901726
CTGGATC12200.032.27361336
TCGGAAG6500.032.19133420