FastQCFastQC Report
Mon 6 Jun 2016
ERR1378998.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378998.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences770745
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT58290.7562812603390227Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCAGTATCTCGTATGCCGTC31060.40298672064041935Illumina Paired End PCR Primer 2 (96% over 33bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCAGTATCTCGTATGCC19210.24923937229563603Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG8050.036.61311328
ATCGGAA7800.036.3443727
AGATCGG8050.035.77464325
GATCGGA8050.035.77464326
TATGCCG3850.035.64760243
TGCCGTC4000.033.74834445
ATGCCGT4100.032.92521344
CCGAGAT8850.032.54077522
CGAGATC9250.031.13361223
GAGATCG9350.030.80063224
ATGCCGA14350.030.73020219
TGCCGAG14450.030.51753620
AATGCCG14550.030.30779518
CGGAAGA10250.028.75468629
GAATGCC15300.028.67506417
GCCGAGA15300.027.93980621
GGAATGC16500.026.99867616
AGGAATG17150.025.71302615
GAAGAGC11800.024.9775931
TCGTATG5450.024.76942840