FastQCFastQC Report
Mon 6 Jun 2016
ERR1378682.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378682.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences894557
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTCATTATCTCGTATGCC9490.10608602917421696Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGGT1150.041.08542629
ACCGGTC1250.037.7985930
TCTCGTA1250.037.7985941
CCGGTCA1250.037.7985931
CGGTCAT1250.037.7985932
CTCGTAT1300.036.344842
CGTATGC1350.035.00065244
TCGTATG1400.033.7487443
TATCTCG1550.033.3877239
GAGCGGT1500.031.512926
GAGACCG1500.031.49882727
AGACCGG1500.031.49882728
CCGAGAC1500.031.49882725
ATCTCGT1650.031.3642240
ATGCCGA1550.030.47932822
AGAGCGG1600.029.5433625
AGCGGTT1600.029.526857
GCGGTTC1650.028.6320958
CGGTTCA1700.027.7899749
CGGAAGA1850.025.5553041