Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379352.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1236371 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATGTATCTCGTATGCC | 3451 | 0.27912333757423946 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGTC | 430 | 0.0 | 40.813625 | 29 |
| CGTATGC | 425 | 0.0 | 40.764374 | 44 |
| CTCGTAT | 440 | 0.0 | 39.88604 | 42 |
| TCTCGTA | 445 | 0.0 | 39.43788 | 41 |
| TCGTATG | 450 | 0.0 | 38.999687 | 43 |
| CGTCATG | 455 | 0.0 | 38.571117 | 32 |
| AGACCGT | 460 | 0.0 | 38.151863 | 28 |
| TATCTCG | 465 | 0.0 | 37.741627 | 39 |
| ACCGTCA | 490 | 0.0 | 35.816036 | 30 |
| ATCTCGT | 500 | 0.0 | 35.099716 | 40 |
| CCGTCAT | 510 | 0.0 | 34.411488 | 31 |
| GAGACCG | 515 | 0.0 | 34.077396 | 27 |
| GTATGCC | 535 | 0.0 | 32.382915 | 45 |
| CCGAGAC | 560 | 0.0 | 31.339033 | 25 |
| GAGCGGT | 590 | 0.0 | 29.36417 | 6 |
| CGGTTCA | 610 | 0.0 | 29.139109 | 9 |
| GCGGTTC | 595 | 0.0 | 29.11741 | 8 |
| GTATCTC | 615 | 0.0 | 28.536354 | 38 |
| AGAGCGG | 615 | 0.0 | 27.805779 | 5 |
| CGGAAGA | 640 | 0.0 | 27.776585 | 1 |