Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379056.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 729665 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTAGAGATCTCGTATGCC | 1200 | 0.16445903256974093 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGGT | 160 | 0.0 | 40.780693 | 29 |
| CGGTAGA | 165 | 0.0 | 39.544914 | 32 |
| TCTCGTA | 160 | 0.0 | 39.374462 | 41 |
| GAGACCG | 155 | 0.0 | 39.193012 | 27 |
| AGCGGTT | 170 | 0.0 | 38.381824 | 7 |
| CCGGTAG | 170 | 0.0 | 38.381824 | 31 |
| CTCGTAT | 165 | 0.0 | 38.181297 | 42 |
| TCGTATG | 165 | 0.0 | 38.181297 | 43 |
| AGACCGG | 175 | 0.0 | 37.285202 | 28 |
| GCGGTTC | 190 | 0.0 | 36.710022 | 8 |
| ACCGGTA | 180 | 0.0 | 36.249504 | 30 |
| CCGAGAC | 170 | 0.0 | 35.734802 | 25 |
| CGGAAGA | 185 | 0.0 | 35.274624 | 1 |
| GAGCGGT | 185 | 0.0 | 35.272205 | 6 |
| CGTATGC | 180 | 0.0 | 34.99952 | 44 |
| AAGAGCG | 190 | 0.0 | 34.34399 | 4 |
| CGGTTCA | 205 | 0.0 | 32.926376 | 9 |
| AGAGCGG | 200 | 0.0 | 32.62679 | 5 |
| CGACATG | 30 | 0.005142937 | 30.0037 | 1 |
| CTAATCG | 30 | 0.005146385 | 29.99959 | 39 |