Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378635.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 537951 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4028 | 0.7487670810166726 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2961 | 0.5504218785725837 | No Hit |
| TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 564 | 0.10484226258525405 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCATA | 465 | 0.0 | 44.998043 | 24 |
| TAAGCCG | 475 | 0.0 | 44.05072 | 13 |
| CCGATGA | 485 | 0.0 | 43.142456 | 17 |
| ACGTCAT | 485 | 0.0 | 43.142456 | 23 |
| CGATGAC | 485 | 0.0 | 43.142456 | 18 |
| GATGACG | 500 | 0.0 | 42.298164 | 19 |
| AGCCGAT | 500 | 0.0 | 41.848183 | 15 |
| TGACGTC | 500 | 0.0 | 41.848183 | 21 |
| ATGACGT | 500 | 0.0 | 41.848183 | 20 |
| GACGTCA | 505 | 0.0 | 41.43385 | 22 |
| GCCGATG | 505 | 0.0 | 41.43385 | 16 |
| CGGGGAA | 440 | 0.0 | 40.90732 | 15 |
| TTCGGTA | 445 | 0.0 | 39.94209 | 22 |
| CGGTATT | 445 | 0.0 | 39.94209 | 24 |
| AAGCCGA | 525 | 0.0 | 39.855415 | 14 |
| AGGCGGT | 455 | 0.0 | 39.558727 | 34 |
| GGCGGTC | 450 | 0.0 | 39.498287 | 35 |
| GTCATAA | 540 | 0.0 | 39.16497 | 25 |
| TTCCTCG | 380 | 0.0 | 39.077255 | 10 |
| GCGGTCT | 460 | 0.0 | 38.63963 | 36 |