FastQCFastQC Report
Mon 6 Jun 2016
ERR1379153.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379153.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences584942
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCAATATCTCGTATGCC10850.18548847578050473Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC1350.041.66587428
GACCGCT1450.038.79236629
GAGACCG1400.038.57069427
TCTCGTA1400.038.57069441
CTCGTAT1450.037.24067342
CCGCTCA1600.036.56180631
CGCTCAA1600.035.15558232
TATCTCG1600.035.15558239
GCGGTTC1650.034.090268
CCGAGAC1650.034.0902625
CGTATGC1600.033.7493644
CGGTTCA1700.033.087619
GAGCGGT1700.033.087616
CGGAAGA1650.032.7322461
ATCTCGT1650.032.7266540
ATGCCGA1750.032.1422522
TCGTATG1700.031.76410343
AGAGCGG1800.031.2547475
TGCCGAG1800.031.24940523
AATGCCG1750.030.85655821