FastQCFastQC Report
Mon 6 Jun 2016
ERR1378975.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378975.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences989329
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT75610.7642553690430585Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACTAATCTCGTATGCCGTC42550.43008948489329635Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACTAATCTCGTATGCC13200.13342376499627526Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4950.037.7343143
GATCGGA9000.037.4956226
TCGGAAG9550.036.98520728
AGATCGG9200.036.680525
ATCGGAA9300.036.28608327
ATGCCGT5250.036.00671444
TGCCGTC5450.034.68536845
AATGCCG16600.032.79737518
CGGAAGA10650.032.74265329
ATGCCGA16850.032.57779319
GAGATCG10500.032.35336724
TGCCGAG16700.032.3315520
CGAGATC10700.031.74862723
CCGAGAT10900.031.16608422
GACCGTC6150.031.0939326
CGTATGC6100.030.61891641
CTCGTAT6200.030.12506539
ACCGTCA6350.030.11459227
GTCGGAA453.493142E-529.99649427
TCTCGTA6250.029.88406238