FastQCFastQC Report
Mon 6 Jun 2016
ERR1379150.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379150.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences608529
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATGTAATCTCGTATGCC14320.23532157054142036Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT1250.044.99868442
ATCTCGT1300.041.53724740
CGTATGC1350.039.9988344
TCTCGTA1350.039.9988341
AGACCGA1350.039.9988328
GACCGAA1400.038.570329
CGGTTCA1500.035.9989479
CCGAGAC1500.035.99894725
CGAATGT1500.035.99894732
TCGTATG1500.035.99894743
TGCCGAG1500.035.99894723
GAGACCG1550.034.83769227
GCGGTTC1500.034.5018238
AGAGCGG1600.033.7545625
ACCGAAT1600.033.74901630
AATCTCG1600.033.74901639
ATGCCGA1600.033.74901622
GAGCGGT1550.033.3888636
CCGAATG1650.032.7263231
AAGAGCG1650.031.3704534