FastQCFastQC Report
Mon 6 Jun 2016
ERR1379132.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379132.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1328545
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGTGATCTCGTATGCCGTC23710.17846591571982884Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGTGATCTCGTATGCC23610.17771321257465875Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3750.035.39378443
ATGCCGT4250.030.70048944
TGCCGTC4650.027.57580245
CGGAAGA5700.022.9260941
CTCGTAT6200.020.6818542
ACCGGAT6300.020.355130
CGTATGC6350.020.19330444
CGGATGT6600.019.77148632
TCGTATG6500.019.72730443
TCTCGTA6550.019.57671441
AGACCGG6700.019.13914928
GACCGGA6750.018.99809329
GAGACCG6750.018.99594927
ATCTCGT7050.018.50738740
GAGCGGT8500.018.283523
CGGTTCA8500.018.2793876
AGAGCGG8800.018.1762182
CCGGATG7100.018.06224631
AGCGGTT8700.017.8632074
GCGGTTC8750.017.7577885