FastQCFastQC Report
Mon 6 Jun 2016
ERR1390698.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390698.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences886818
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGAGAC1300.027.68387845
GATCGGA1150.027.38296518
ATCGGAA1300.025.95363619
AGATCGG1251.8189894E-1225.19232717
AGACCGT450.001228512724.99238843
GCGGTTC1353.6379788E-1223.32754328
CGGTTCA1459.094947E-1221.7187529
GAGCGGT1459.094947E-1221.71752526
TCGGAAG1653.6379788E-1220.44831720
AGCGGTT1552.3646862E-1120.3175427
AGAGCGG1656.002665E-1119.08509625
GACCGTG600.006520802618.74429144
GAGACCG600.006520802618.74429142
CGGAAGA1902.3646862E-1117.7577521
CCTTCGT1053.06831E-517.1705531
CGTGTTA800.001713917116.86986212
CGTTGGA1358.418465E-716.6964245
ACCTCCG1257.640208E-616.1959835
ATCGTGC850.002534199315.910715
AAGAGCG2009.313226E-1015.74520424