Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379289.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 298407 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGTCGATCTCGTATGCC | 568 | 0.19034406029349177 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGAAGTC | 90 | 0.0 | 44.999836 | 32 |
| GTCGATC | 95 | 0.0 | 42.63142 | 36 |
| GACCGAA | 95 | 0.0 | 42.63142 | 29 |
| GAGACCG | 95 | 0.0 | 42.63142 | 27 |
| AGACCGA | 95 | 0.0 | 42.63142 | 28 |
| CGTATGC | 90 | 0.0 | 42.499844 | 44 |
| CTCGTAT | 90 | 0.0 | 42.499844 | 42 |
| TCTCGTA | 95 | 0.0 | 40.26301 | 41 |
| TCGTATG | 95 | 0.0 | 40.26301 | 43 |
| ACCGAAG | 105 | 0.0 | 38.57128 | 30 |
| GAAGTCG | 105 | 0.0 | 38.57128 | 33 |
| CCGAAGT | 105 | 0.0 | 38.57128 | 31 |
| AGTCGAT | 105 | 0.0 | 38.57128 | 35 |
| ATCTCGT | 105 | 0.0 | 36.428432 | 40 |
| GCGGTTC | 115 | 0.0 | 35.21726 | 8 |
| AAGAGCG | 115 | 0.0 | 35.21726 | 4 |
| AGCGGTT | 115 | 0.0 | 35.21726 | 7 |
| GAGCGGT | 115 | 0.0 | 35.21726 | 6 |
| GTATGCC | 110 | 0.0 | 34.7726 | 45 |
| TGCCGAG | 120 | 0.0 | 33.749874 | 23 |