FastQCFastQC Report
Mon 6 Jun 2016
ERR1390783.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390783.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences737162
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT352.8258443E-432.13035642
TCTCGTA352.8258443E-432.13035641
CACGTAG300.005091211830.0658264
CGTATGC406.1780674E-428.11406344
ATACGGA406.1780674E-428.11406329
TCGTATG450.001228920824.99027643
ATCTCGT500.002268967722.4912540
GACCGAG702.7094233E-522.4912529
GAGACCG500.002268967722.4912527
AGACCGA702.7094233E-522.4912528
ACCGAGA754.613564E-520.99183330
GACCTCG800.001714515516.86843739
GCGCCAC850.00252676515.9172034
CGCCACC1108.4289175E-414.3525285
GCCACCG950.005288849614.2446146
GGACCAC1000.00756708413.4947542
CCAACGA1403.5315254E-412.8879836
CGAAATC1250.002253327512.59766410
AACGAAA1506.454185E-411.9977758
CAACGAA1802.345972E-411.2479147