Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378605.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 658742 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3426 | 0.5200822173172501 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2480 | 0.37647516022964983 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 335 | 0.0 | 42.311436 | 13 |
| CTCGGGG | 320 | 0.0 | 41.482414 | 13 |
| ACGTCAT | 350 | 0.0 | 41.140915 | 23 |
| GACGTCA | 335 | 0.0 | 40.968216 | 22 |
| CCGATGA | 345 | 0.0 | 40.432873 | 17 |
| CGTCATA | 345 | 0.0 | 40.432873 | 24 |
| GCCGATG | 340 | 0.0 | 40.365738 | 16 |
| TCGGGGA | 375 | 0.0 | 39.598133 | 14 |
| GCGGTCT | 390 | 0.0 | 39.228916 | 36 |
| AGCCGAT | 365 | 0.0 | 38.833782 | 15 |
| TGACGTC | 355 | 0.0 | 38.660145 | 21 |
| TTCGGTA | 390 | 0.0 | 38.65202 | 22 |
| CGGTATT | 390 | 0.0 | 38.65202 | 24 |
| CGATGAC | 365 | 0.0 | 38.217373 | 18 |
| ATTCGGT | 395 | 0.0 | 38.162754 | 21 |
| GGCGGTC | 395 | 0.0 | 38.162754 | 35 |
| CGGGGAA | 390 | 0.0 | 38.075123 | 15 |
| AATTCGG | 400 | 0.0 | 37.685722 | 20 |
| TCGGTAT | 400 | 0.0 | 37.685722 | 23 |
| GAATTCG | 395 | 0.0 | 37.593163 | 19 |