FastQCFastQC Report
Mon 6 Jun 2016
ERR1379386.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379386.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524836
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCTGAATCTCGTATGCC15770.30047481498982537Illumina Paired End PCR Primer 2 (97% over 37bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGCGG2150.041.866145
ATCTCGT2100.041.7913840
GAGCGGT2250.041.0016486
AGCGGTT2250.040.997747
GCGGTTC2200.040.9068378
AGACCGA2200.040.90683728
CGGAAGA2250.040.0092351
CGGTTCA2250.039.99789
CGTATGC2200.039.88416744
GAGACCG2350.039.2531627
AAGAGCG2400.038.442714
CTCGTAT2300.038.1573542
ACCGAGC2400.037.49793630
CGAGCTG2400.037.49793632
TCGTATG2350.037.3383743
GACCGAG2450.036.7326729
TCTCGTA2400.036.56745541
AATGCCG2400.036.5604921
CCGAGAC2400.036.5604925
CCGAGCT2500.035.99801631