Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378867.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 920976 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2612 | 0.2836121679609458 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACTTATCTCGTATGCCGTC | 2000 | 0.2171609249318115 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACTTATCTCGTATGCC | 1988 | 0.2158579593822206 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 255 | 0.0 | 33.5284 | 43 |
| GATCGGA | 325 | 0.0 | 33.22616 | 26 |
| AGATCGG | 340 | 0.0 | 32.421974 | 25 |
| ATGCCGT | 260 | 0.0 | 32.018265 | 44 |
| ATCGGAA | 340 | 0.0 | 31.7603 | 27 |
| TCGGAAG | 365 | 0.0 | 31.433994 | 28 |
| TGCCGTC | 285 | 0.0 | 29.999094 | 45 |
| AATGCCG | 770 | 0.0 | 26.879387 | 18 |
| ATGCCGA | 805 | 0.0 | 25.990183 | 19 |
| CCGAGAT | 460 | 0.0 | 25.431255 | 22 |
| TGCCGAG | 880 | 0.0 | 23.519463 | 20 |
| GCCGAGA | 905 | 0.0 | 22.372585 | 21 |
| GAATGCC | 950 | 0.0 | 22.260067 | 17 |
| CGAGATC | 540 | 0.0 | 21.247053 | 23 |
| GAGATCG | 520 | 0.0 | 21.19898 | 24 |
| TCTCGTA | 410 | 0.0 | 20.850765 | 38 |
| TATCTCG | 425 | 0.0 | 20.646437 | 36 |
| AGCGGTT | 1015 | 0.0 | 20.626339 | 4 |
| GAGCGGT | 1015 | 0.0 | 20.626339 | 3 |
| AGAGCGG | 1010 | 0.0 | 20.511137 | 2 |