FastQCFastQC Report
Mon 6 Jun 2016
ERR1378628.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378628.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences728269
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA37160.5102510198841362No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA29030.39861644529699874No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGATG3750.043.19637316
CGTCATA3700.043.17205424
AAGCCGA3800.042.62800214
TAAGCCG3800.042.62800213
CCGATGA3900.042.1118517
CGATGAC4000.040.496618
TCGGTAT3800.040.25977723
GCGGTCT3700.040.13176736
TGACGTC4000.039.9341521
ATGACGT4000.039.9341520
ACGTCAT4000.039.9341523
AGCCGAT4100.039.5088815
GACGTCA4050.039.4411322
CGGTATT3950.038.73092724
TTCGGTA3900.038.65060422
GGCGGTC3850.038.5681935
CTCGGGG3350.038.28037313
GATGACG4250.038.1144519
AGGCGGT3900.038.07372734
ATTCGGT4000.037.68433821