FastQCFastQC Report
Mon 6 Jun 2016
ERR1379356.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379356.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences784635
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTCTAATCTCGTATGCC16420.2092692780719698Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC2000.038.2521144
TCTCGTA1900.037.89441341
TCGTATG2050.037.31913843
AGACCGT2100.036.4282628
GAGACCG2250.033.99971427
CTCGTAT2150.033.49022342
ATCTCGT2250.032.9997240
GAGCGGT2350.032.5529176
GACCGTG2400.031.87473129
CGGTTCA2600.030.2882049
ACGGATT300.00514648829.99974619
CCCGCGC300.00514648829.99974612
AAGAGCG2550.029.9997444
AGCGGTT2650.029.7167287
CGTGTCT2650.029.71672832
CGGAAGA2350.029.6824911
GCGGTTC2750.028.6361228
AGAGCGG2700.028.3330945
GTATGCC2750.027.81971745
CCGTGTC2750.027.81794531