Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378801.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 839892 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCATGATCTCGTATGCCGTC | 1904 | 0.22669581327123012 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCATGATCTCGTATGCC | 1715 | 0.20419292004210066 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 195 | 0.0 | 35.766296 | 44 |
| TATGCCG | 190 | 0.0 | 35.523403 | 43 |
| TGCCGTC | 220 | 0.0 | 30.6793 | 45 |
| CAACGGA | 50 | 7.1601375E-5 | 26.997786 | 32 |
| CGTATGC | 350 | 0.0 | 22.498156 | 44 |
| TCGTATG | 370 | 0.0 | 21.282038 | 43 |
| GACCGTT | 380 | 0.0 | 20.721985 | 29 |
| GTATGCC | 395 | 0.0 | 20.504648 | 45 |
| CGGAAGA | 410 | 0.0 | 20.312887 | 1 |
| CTCGTAT | 380 | 0.0 | 20.129929 | 42 |
| ACCGTTC | 395 | 0.0 | 19.935074 | 30 |
| CCGTTCA | 395 | 0.0 | 19.935074 | 31 |
| GAGACCG | 385 | 0.0 | 19.8685 | 27 |
| TCTCGTA | 385 | 0.0 | 19.8685 | 41 |
| ATCTCGT | 390 | 0.0 | 19.613775 | 40 |
| GATCGGA | 195 | 0.0 | 19.613775 | 26 |
| AGACCGT | 405 | 0.0 | 19.44285 | 28 |
| AGATCGG | 205 | 0.0 | 18.657005 | 25 |
| CGAGACC | 440 | 0.0 | 18.407581 | 26 |
| TCGGAAG | 210 | 0.0 | 18.212791 | 28 |