FastQCFastQC Report
Mon 6 Jun 2016
ERR1390726.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390726.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences733594
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT651.5258689E-524.22441942
TCTCGTA702.7067448E-522.49410441
ATCTCGT807.573473E-519.68234340
TCGTATG807.573473E-519.68234343
ACCGGCT851.20610785E-418.52455730
CGTATGC851.20610785E-418.52455744
AGACCGG1002.048409E-517.9965128
GACCGGC901.8682567E-417.49541529
CGGAAGA1004.1232698E-415.77059651
CGGTTCA1156.78048E-515.6512739
ATGCCGA1301.1073351E-515.57390222
GCGGTTC1056.0358056E-414.9991368
CGCTCCA900.00375363414.9991369
TGCCGAG1351.5829015E-514.99709323
GAGACCG1209.760617E-514.99709127
CGGCTAA1553.6226775E-614.51232532
CTCGTGA1150.001203430213.69206320
ACTAGAC2501.4824764E-913.49738219
GACCTCG1352.6542484E-413.330749517
GAGCGGT1200.001636672913.1448566