Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378984.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1169178 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3821 | 0.32681080211909563 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCAGATATCTCGTATGCCGTC | 2283 | 0.19526539158280434 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 310 | 0.0 | 32.671787 | 43 |
| GCGCAAC | 35 | 2.819337E-4 | 32.144936 | 12 |
| TGCCGTC | 310 | 0.0 | 31.945745 | 45 |
| CTCGTAT | 325 | 0.0 | 31.15586 | 39 |
| ATCGGAA | 500 | 0.0 | 31.046694 | 27 |
| TCGGAAG | 515 | 0.0 | 30.579268 | 28 |
| ATGCCGT | 325 | 0.0 | 30.471327 | 44 |
| GATCGGA | 510 | 0.0 | 30.437937 | 26 |
| TCTCGTA | 335 | 0.0 | 30.225834 | 38 |
| CGTATGC | 345 | 0.0 | 28.699965 | 41 |
| AATGCCG | 920 | 0.0 | 28.611086 | 18 |
| TATCTCG | 365 | 0.0 | 28.357996 | 36 |
| TCGTATG | 350 | 0.0 | 28.287544 | 40 |
| AGATCGG | 570 | 0.0 | 27.62864 | 25 |
| ATGCCGA | 965 | 0.0 | 27.276888 | 19 |
| TGCCGAG | 960 | 0.0 | 27.184607 | 20 |
| CGGAAGA | 590 | 0.0 | 27.07339 | 29 |
| AGACCGG | 375 | 0.0 | 26.997126 | 25 |
| ACCGGCA | 385 | 0.0 | 26.880257 | 27 |
| GAGACCG | 385 | 0.0 | 26.295902 | 24 |