Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378674.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1006797 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCAGTATCTCGTATGCC | 1296 | 0.12872505579575624 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCGGTT | 185 | 0.0 | 38.9148 | 7 |
| CTCGTAT | 180 | 0.0 | 38.747818 | 42 |
| GACCGTT | 205 | 0.0 | 37.314972 | 29 |
| AGACCGT | 200 | 0.0 | 37.12291 | 28 |
| CCGTTCA | 200 | 0.0 | 37.12291 | 31 |
| TCGTATG | 195 | 0.0 | 36.920998 | 43 |
| CGTATGC | 205 | 0.0 | 36.217472 | 44 |
| GCGGTTC | 200 | 0.0 | 35.996185 | 8 |
| CGGTTCA | 215 | 0.0 | 35.577625 | 9 |
| ACCGTTC | 215 | 0.0 | 34.53294 | 30 |
| ATGCCGA | 215 | 0.0 | 34.531223 | 22 |
| TCTCGTA | 205 | 0.0 | 34.022472 | 41 |
| CGTTCAG | 225 | 0.0 | 33.99809 | 32 |
| AATGCCG | 225 | 0.0 | 32.996502 | 21 |
| AGAGCGG | 220 | 0.0 | 32.74169 | 5 |
| AAGAGCG | 230 | 0.0 | 32.296833 | 4 |
| GAGACCG | 230 | 0.0 | 32.280792 | 27 |
| GAGCGGT | 225 | 0.0 | 32.0141 | 6 |
| TATCTCG | 220 | 0.0 | 31.70276 | 39 |
| CGGAAGA | 235 | 0.0 | 31.620665 | 1 |