Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378771.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 917327 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACATAATCTCGTATGCC | 1400 | 0.15261733275048048 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAACATAATCTCGTATGCCGTC | 1287 | 0.14029893374990599 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 140 | 0.0 | 38.567924 | 43 |
| TGCCGTC | 150 | 0.0 | 35.99673 | 45 |
| ATGCCGT | 180 | 0.0 | 29.997274 | 44 |
| CGAACAT | 300 | 0.0 | 22.49918 | 32 |
| ACCGAAC | 295 | 0.0 | 22.11784 | 30 |
| CGTATGC | 300 | 0.0 | 21.748024 | 44 |
| CTCGTAT | 290 | 0.0 | 21.722164 | 42 |
| GACCGAA | 310 | 0.0 | 21.04762 | 29 |
| TCGTATG | 310 | 0.0 | 21.046474 | 43 |
| TCTCGTA | 300 | 0.0 | 20.998093 | 41 |
| AGACCGA | 315 | 0.0 | 20.713533 | 28 |
| AATCTCG | 320 | 0.0 | 20.389883 | 39 |
| CGGAAGA | 360 | 0.0 | 20.007998 | 1 |
| ATCTCGT | 315 | 0.0 | 19.998184 | 40 |
| CCGAACA | 330 | 0.0 | 19.772009 | 31 |
| GAGACCG | 340 | 0.0 | 19.190477 | 27 |
| AGATCGG | 130 | 2.7715942E-8 | 19.03777 | 25 |
| CGAGACC | 365 | 0.0 | 18.49248 | 26 |
| CCGAGAC | 355 | 0.0 | 18.379614 | 25 |
| GATCGGA | 135 | 4.271169E-8 | 18.332666 | 26 |