Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379310.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 245345 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGGAATCATCTCGTATGCC | 251 | 0.10230491756506145 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGTTCA | 25 | 3.8823266E-5 | 44.99898 | 9 |
| AATGCCG | 30 | 2.1588348E-6 | 44.99898 | 21 |
| GCGGTTC | 30 | 1.1374576E-4 | 37.499153 | 8 |
| TGCCGAG | 30 | 1.1374576E-4 | 37.499153 | 23 |
| ATGCCGA | 40 | 1.5558275E-5 | 33.749237 | 22 |
| CGGAAGA | 35 | 2.8076014E-4 | 32.15524 | 1 |
| ATCTCGT | 35 | 2.8143296E-4 | 32.142128 | 40 |
| CGTATGC | 35 | 2.8143296E-4 | 32.142128 | 44 |
| CTCGTAT | 35 | 2.8143296E-4 | 32.142128 | 42 |
| AGCGGTT | 35 | 2.8143296E-4 | 32.142128 | 7 |
| GAGACCG | 35 | 2.8143296E-4 | 32.142128 | 27 |
| TCTCGTA | 35 | 2.8143296E-4 | 32.142128 | 41 |
| CCGAGAC | 35 | 2.8143296E-4 | 32.142128 | 25 |
| TCGTATG | 35 | 2.8143296E-4 | 32.142128 | 43 |
| GACCGGG | 40 | 6.153027E-4 | 28.124365 | 29 |
| GAGCGGT | 40 | 6.153027E-4 | 28.124365 | 6 |
| AGACCGG | 40 | 6.153027E-4 | 28.124365 | 28 |
| AAGAGCG | 45 | 0.0012225127 | 25.00453 | 4 |
| CATCTCG | 45 | 0.0012239671 | 24.999434 | 39 |
| GTATGCC | 45 | 0.0012239671 | 24.999434 | 45 |