Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379174.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 491287 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTACTATCTCGTATGCC | 1764 | 0.35905692599234257 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGTTAC | 195 | 0.0 | 43.846058 | 32 |
| CCGGTTA | 190 | 0.0 | 43.81569 | 31 |
| ACCGGTT | 200 | 0.0 | 42.7499 | 30 |
| GACCGGT | 195 | 0.0 | 42.692215 | 29 |
| GAGACCG | 195 | 0.0 | 42.692215 | 27 |
| AGACCGG | 195 | 0.0 | 42.692215 | 28 |
| CTCGTAT | 205 | 0.0 | 41.707222 | 42 |
| CGTATGC | 210 | 0.0 | 40.714195 | 44 |
| TATCTCG | 210 | 0.0 | 40.714195 | 39 |
| TCGTATG | 210 | 0.0 | 40.714195 | 43 |
| GCGGTTC | 215 | 0.0 | 39.767353 | 8 |
| CGGTTCA | 215 | 0.0 | 39.767353 | 9 |
| TCTCGTA | 215 | 0.0 | 39.767353 | 41 |
| ATCTCGT | 220 | 0.0 | 38.863544 | 40 |
| GAGCGGT | 220 | 0.0 | 38.863544 | 6 |
| AGAGCGG | 220 | 0.0 | 38.863544 | 5 |
| AGCGGTT | 225 | 0.0 | 37.999912 | 7 |
| CGGAAGA | 235 | 0.0 | 36.3866 | 1 |
| CCGAGAC | 230 | 0.0 | 36.195568 | 25 |
| CGAGACC | 230 | 0.0 | 36.195568 | 26 |