Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378629.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 997081 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3188 | 0.3197333015070992 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2458 | 0.24651959068521012 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 360 | 0.0 | 41.244713 | 15 |
| GCCGATG | 370 | 0.0 | 40.73802 | 16 |
| GACGTCA | 360 | 0.0 | 39.994873 | 22 |
| TGACGTC | 365 | 0.0 | 39.447 | 21 |
| CGATGAC | 370 | 0.0 | 38.913933 | 18 |
| TAAGCCG | 370 | 0.0 | 38.913933 | 13 |
| CGTCATA | 365 | 0.0 | 38.83259 | 24 |
| TTCGGTA | 315 | 0.0 | 38.566483 | 22 |
| CCGATGA | 380 | 0.0 | 38.48191 | 17 |
| AATTCGG | 325 | 0.0 | 38.072044 | 20 |
| GATTCGG | 65 | 9.094947E-12 | 38.072044 | 11 |
| AAGCCGA | 390 | 0.0 | 38.07204 | 14 |
| GATGACG | 375 | 0.0 | 37.79516 | 19 |
| ACGTCAT | 385 | 0.0 | 37.397804 | 23 |
| CGGTATT | 325 | 0.0 | 37.381702 | 24 |
| ATTCGGT | 335 | 0.0 | 36.935566 | 21 |
| GAATTCG | 335 | 0.0 | 36.935566 | 19 |
| TCGGTAT | 330 | 0.0 | 36.81346 | 23 |
| CGGGGAA | 345 | 0.0 | 35.864967 | 15 |
| CGGTCTC | 345 | 0.0 | 35.21464 | 37 |