FastQCFastQC Report
Mon 6 Jun 2016
ERR1390779.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390779.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences874331
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTACG401.5638789E-533.73820532
CCGTATC352.8256173E-432.13162644
AGATCGG901.2732926E-1129.9912317
CCGGTAC554.1747808E-628.62635631
GATCGGA952.3646862E-1128.41274618
GGTACGA507.173519E-526.99056433
CGAATCT507.173519E-526.99056437
GTACGAA507.173519E-526.99056434
ATCGGAA1058.54925E-1125.70676819
TTGCGAA450.001228821524.9912620
TCGGAAG1003.655441E-822.49213820
CGTATGC602.472696E-422.49213644
CCGGCTA955.5441706E-721.30955916
ACCGGTA654.2471214E-420.7619730
TCGTATG654.2471214E-420.7619743
AAGCGGC908.114366E-620.03774
AGACCGG706.9980795E-419.27897528
CCTTCGT600.00643249218.7885761
TACGAAT851.2072534E-418.52293635
TCTCGTA750.001112540617.9937141