FastQCFastQC Report
Mon 6 Jun 2016
ERR1379289.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379289.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences298407
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGTCGATCTCGTATGCC5680.19034406029349177Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAAGTC900.044.99983632
GTCGATC950.042.6314236
GACCGAA950.042.6314229
GAGACCG950.042.6314227
AGACCGA950.042.6314228
CGTATGC900.042.49984444
CTCGTAT900.042.49984442
TCTCGTA950.040.2630141
TCGTATG950.040.2630143
ACCGAAG1050.038.5712830
GAAGTCG1050.038.5712833
CCGAAGT1050.038.5712831
AGTCGAT1050.038.5712835
ATCTCGT1050.036.42843240
GCGGTTC1150.035.217268
AAGAGCG1150.035.217264
AGCGGTT1150.035.217267
GAGCGGT1150.035.217266
GTATGCC1100.034.772645
TGCCGAG1200.033.74987423