FastQCFastQC Report
Mon 6 Jun 2016
ERR1390630.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390630.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1811728
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGCTA2001.8189894E-1217.99443616
TCGTCAA750.001113071217.99393810
GCGCCCG800.001715219216.86931812
CCCGCCA2159.094947E-1216.778373
CGGCTAA1956.511982E-1016.14885317
CCGCCAC2009.0221874E-1015.7821564
AACCCGG2505.456968E-1215.2952722
CGTGAGC2651.4551915E-1114.4662321
GTGGGCG1402.23847E-514.45941642
ACCACGC2551.3278623E-1014.1128929
ACGCCCA1453.1161668E-513.96081412
CACGCCC2154.092908E-813.6000711
TCGCCTG1000.007446554513.5290592
TTCACCG1352.607854E-413.3605555
GAACCCG2552.0045263E-913.23083721
TGAGCCG2907.2759576E-1113.18521345
ACCCGGG3051.6916601E-1012.53710723
CGCCCAG2603.7251084E-812.11164113
CCACGCC3203.783498E-1011.949100510
CCCGGGA3254.8930815E-1011.76591724