Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379197.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 525895 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTATGATCTCGTATGCC | 1100 | 0.2091672291997452 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCGGTTC | 165 | 0.0 | 43.635906 | 8 |
| CGCTTAT | 170 | 0.0 | 42.352497 | 32 |
| AGCGGTT | 175 | 0.0 | 41.142426 | 7 |
| GAGCGGT | 175 | 0.0 | 41.142426 | 6 |
| AGAGCGG | 180 | 0.0 | 40.003384 | 5 |
| TCTCGTA | 180 | 0.0 | 39.99958 | 41 |
| ATCTCGT | 190 | 0.0 | 39.078537 | 40 |
| AAGAGCG | 185 | 0.0 | 38.922207 | 4 |
| CTCGTAT | 185 | 0.0 | 38.91851 | 42 |
| CCGCTTA | 185 | 0.0 | 38.91851 | 31 |
| CGTATGC | 190 | 0.0 | 37.894337 | 44 |
| AATGCCG | 190 | 0.0 | 37.894337 | 21 |
| TCGTATG | 190 | 0.0 | 37.894337 | 43 |
| AGACCGC | 195 | 0.0 | 36.922688 | 28 |
| CCGAGAC | 195 | 0.0 | 36.922688 | 25 |
| ACCGCTT | 200 | 0.0 | 35.999622 | 30 |
| GACCGCT | 200 | 0.0 | 35.999622 | 29 |
| ATGCCGA | 200 | 0.0 | 35.999622 | 22 |
| TGCCGAG | 200 | 0.0 | 35.999622 | 23 |
| CGGAAGA | 210 | 0.0 | 35.360134 | 1 |