FastQCFastQC Report
Mon 6 Jun 2016
ERR1378801.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378801.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences839892
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCATGATCTCGTATGCCGTC19040.22669581327123012Illumina Paired End PCR Primer 2 (96% over 33bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCATGATCTCGTATGCC17150.20419292004210066Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGT1950.035.76629644
TATGCCG1900.035.52340343
TGCCGTC2200.030.679345
CAACGGA507.1601375E-526.99778632
CGTATGC3500.022.49815644
TCGTATG3700.021.28203843
GACCGTT3800.020.72198529
GTATGCC3950.020.50464845
CGGAAGA4100.020.3128871
CTCGTAT3800.020.12992942
ACCGTTC3950.019.93507430
CCGTTCA3950.019.93507431
GAGACCG3850.019.868527
TCTCGTA3850.019.868541
ATCTCGT3900.019.61377540
GATCGGA1950.019.61377526
AGACCGT4050.019.4428528
AGATCGG2050.018.65700525
CGAGACC4400.018.40758126
TCGGAAG2100.018.21279128