Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379369.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 639493 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGTACATCTCGTATGCC | 1093 | 0.17091664803211296 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 145 | 0.0 | 38.7956 | 44 |
| CGGAGTA | 145 | 0.0 | 38.792564 | 32 |
| GAGCGGT | 155 | 0.0 | 37.741413 | 6 |
| TCGTATG | 155 | 0.0 | 37.741413 | 43 |
| TCTCGTA | 150 | 0.0 | 37.499477 | 41 |
| ACCGGAG | 155 | 0.0 | 36.289818 | 30 |
| CTCGTAT | 160 | 0.0 | 35.15576 | 42 |
| ATCTCGT | 165 | 0.0 | 34.090435 | 40 |
| GACCGGA | 165 | 0.0 | 34.090435 | 29 |
| AGACCGG | 165 | 0.0 | 34.090435 | 28 |
| CCGGAGT | 170 | 0.0 | 33.087776 | 31 |
| AGCGGTT | 170 | 0.0 | 33.087776 | 7 |
| GTATGCC | 175 | 0.0 | 32.144924 | 45 |
| GCGGTTC | 175 | 0.0 | 32.14241 | 8 |
| CGGAAGA | 190 | 0.0 | 30.793861 | 1 |
| CGGTTCA | 195 | 0.0 | 28.845753 | 9 |
| AGAGCGG | 200 | 0.0 | 28.126808 | 5 |
| CCGAGAC | 200 | 0.0 | 28.124609 | 25 |
| GAGACCG | 205 | 0.0 | 27.438643 | 27 |
| GTACATC | 210 | 0.0 | 26.785343 | 36 |