FastQCFastQC Report
Mon 6 Jun 2016
ERR1379273.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379273.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558643
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGCTC1205.164886E-616.87452922
CTCGGCT1351.5790785E-514.99958221
CGGCTCA1351.5790785E-514.99958223
ACTAGAC1859.584619E-814.59418819
CCGCCAC950.005362866414.2139474
CGCCACC1453.094328E-513.9676295
CTCCGCC1352.6487507E-413.33296237
TCTCGGC1352.6487507E-413.33296220
ATCTCGG1200.001654899713.12463419
TCTCGAA1250.002249482312.59964925
TCCGCCT1454.8427517E-412.41344738
AGCATTC3651.8189894E-1212.32842429
GCATTCT3601.8189894E-1111.8746730
CGCCTCC1350.004003511311.66634240
GAGTGCA3501.3460522E-1011.5742144
GGAGTGC3357.9671736E-1011.4206593
GCCACCA3957.2759576E-1211.3920886
GGGTGAC1400.00525149111.24968728
TGCAACC2503.6791644E-610.799731
GCACTCC2759.93623E-710.63606716