FastQCFastQC Report
Mon 6 Jun 2016
ERR1378979.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378979.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1196677
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT79370.6632533256676614Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCCGTC42660.3564871723948902Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCC17210.14381491413305345Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG5150.039.32013343
ATGCCGT5350.037.8502244
ATCGGAA11100.036.48472227
TCGGAAG11550.036.0372228
GATCGGA11400.035.7219626
AGATCGG11950.034.2661325
TGCCGTC5900.033.94045645
AATGCCG19100.032.982718
CCGAGAT12650.032.9035522
ATGCCGA19400.032.5886319
TGCCGAG19600.032.25609620
CGAGATC12900.032.09147323
GAGATCG13300.030.95715124
GCCGAGA20050.030.8588621
CGGAAGA13650.030.49303429
CTCGTAT6800.029.77797539
TCTCGTA6800.029.77797538
CGTATGC6900.029.3464141
GAATGCC21800.029.104117
GAGACCG7100.028.83663724