FastQCFastQC Report
Mon 6 Jun 2016
ERR1390743.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390743.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences886740
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGACT300.00515385929.9913912
GATCGGA450.001227983224.99423618
AGATCGG500.002267240522.49481217
AGCGCTC654.240549E-420.7667837
GCGCTCC654.240549E-420.7667838
CCGAACT550.003900082320.48684
ACCCGGC550.003941099620.4498314
CGCTCCA901.8667507E-417.4979389
CCGGCTA1053.1172887E-517.13890516
CGGCTAA1205.181775E-616.87110917
TCGTTGG1358.4368185E-716.6929474
CGTTGGA1209.6042066E-515.0261985
CCTTCGT1251.3608663E-414.4235211
GCCCGGC1251.3825967E-414.3966814
GCCACCA5200.014.3037846
ACCACGC1605.029169E-614.0608439
CTCCGCC1504.2798813E-513.49612537
TTCGTTG1352.6144998E-413.3551123
GGAAACG1709.40841E-613.2337359
TCGCTTG1555.819447E-513.06150415