FastQCFastQC Report
Mon 6 Jun 2016
ERR1378928.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378928.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546714
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCCTTAATCTCGTATGCC96291.7612499405539277Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC56051.0252161093368743Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT12110.22150521113415791Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT11900.037.43651640
CTCGTAT11950.037.2798842
TCTCGTA12000.037.12454641
CGTATGC12250.036.366944
TCGTATG12400.035.9269843
CGGCCTT12650.035.7505532
GACCGGC12650.035.57268529
GAGACCG12600.035.53528227
AATCTCG12550.035.49757839
GGCCTTA12850.035.36921733
ACCGGCC12800.035.15582330
AGACCGG12800.035.15582328
GTATGCC12600.034.99957345
CCGGCCT12950.034.92235631
TAATCTC13000.034.09573738
CGAGACC13300.034.00334526
GCCTTAA13400.033.91749634
CTTAATC13350.033.70745536
CCTTAAT13650.033.46113235
AGATCGG8400.032.9460317