FastQCFastQC Report
Mon 6 Jun 2016
ERR1390696.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390696.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences786142
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGGGT500.002268128822.49290812
GATCGGA1501.4551915E-1120.99471518
GACCGTT550.003942639620.448144
CCGAGAC2000.020.24361845
ATCGGAA1603.8198777E-1119.68254719
TCGGAAG1603.8198777E-1119.68129520
GTTCGAG600.006520563318.7440931
TCGTATA1102.252702E-618.4103159
ATCTTCG1459.447467E-817.1016565
CGTATAA1104.6318768E-516.36472310
TGCCCGG1257.638248E-616.19592513
CTCCGCC1257.642864E-616.19489537
CTTCGTA1401.2525925E-616.0724967
TCTTCGT1552.0191692E-715.9983246
CGAGATC2251.8189894E-1115.99597515
ATCCGCC850.00253813415.9066883
TGTAGAC850.002569596315.87734832
AGATCGG2009.295036E-1015.746037517
GATCCGC900.003714482315.0229832
CCGAGAT2405.0931703E-1114.99622614