Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378977.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1321010 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6849 | 0.5184669306061271 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTCTAATCTCGTATGCCGTC | 3771 | 0.2854633954322829 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 475 | 0.0 | 38.376198 | 43 |
| ATGCCGT | 525 | 0.0 | 34.72132 | 44 |
| TCGGAAG | 990 | 0.0 | 33.405746 | 28 |
| GATCGGA | 995 | 0.0 | 32.559555 | 26 |
| AGATCGG | 1000 | 0.0 | 32.396755 | 25 |
| ATCGGAA | 1005 | 0.0 | 32.235577 | 27 |
| TGCCGTC | 580 | 0.0 | 31.040775 | 45 |
| TCGTATG | 595 | 0.0 | 31.009995 | 40 |
| TGCCGAG | 1675 | 0.0 | 30.892431 | 20 |
| ATGCCGA | 1680 | 0.0 | 30.533815 | 19 |
| CGTATGC | 590 | 0.0 | 30.511196 | 41 |
| AATGCCG | 1685 | 0.0 | 30.443209 | 18 |
| CTCGTAT | 595 | 0.0 | 30.253653 | 39 |
| CGGAAGA | 1100 | 0.0 | 29.656124 | 29 |
| TCTCGTA | 610 | 0.0 | 29.140839 | 38 |
| AGACCGT | 635 | 0.0 | 28.697914 | 25 |
| CCGAGAT | 1160 | 0.0 | 28.316132 | 22 |
| CCGTGTC | 630 | 0.0 | 28.211462 | 28 |
| CGAGATC | 1170 | 0.0 | 28.074112 | 23 |
| GAGATCG | 1175 | 0.0 | 27.571709 | 24 |