FastQCFastQC Report
Mon 6 Jun 2016
ERR1378767.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378767.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences632565
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGCGG1000.040.507975
CGTATGC950.037.89320844
TATCTCG850.037.05732739
CGAAGTA1000.035.99854332
GAGCGGT1200.033.7539756
TCGTATG1000.033.74863443
ATGCCGA1150.033.25952522
ATCTCGT950.033.15655540
CTCGTAT950.033.15655542
GACCGAA1100.032.72595229
ACCGAAG1100.032.72595230
ATTACCG352.819621E-432.1415645
AGACCGA1150.031.30308328
AAGAGCG1300.031.1599754
GCGGTTC1350.029.9987898
AGCGGTT1350.029.9987897
GAGACCG1200.029.99878927
GCGGAGC300.00514654529.99878932
TCTCGTA1050.029.99878741
CGGAAGA1200.028.1349851