Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379200.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 297335 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACCTTATCTCGTATGCC | 1214 | 0.4082936754838818 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTTAAT | 20 | 7.019798E-4 | 45.006557 | 4 |
| ACCGAAC | 150 | 0.0 | 44.99899 | 30 |
| CCGAACC | 160 | 0.0 | 43.592773 | 31 |
| CGAACCT | 155 | 0.0 | 43.54741 | 32 |
| GACCGAA | 155 | 0.0 | 43.54741 | 29 |
| AGACCGA | 155 | 0.0 | 43.54741 | 28 |
| ATCTCGT | 160 | 0.0 | 42.186554 | 40 |
| CGTATGC | 160 | 0.0 | 42.186554 | 44 |
| GAGACCG | 160 | 0.0 | 42.186554 | 27 |
| TCTCGTA | 160 | 0.0 | 42.186554 | 41 |
| TCGTATG | 160 | 0.0 | 42.186554 | 43 |
| CTCGTAT | 165 | 0.0 | 40.908176 | 42 |
| GCGGTTC | 165 | 0.0 | 40.908176 | 8 |
| AATGCCG | 165 | 0.0 | 40.908176 | 21 |
| TATCTCG | 165 | 0.0 | 40.908176 | 39 |
| AAGAGCG | 175 | 0.0 | 39.862953 | 4 |
| CGGTTCA | 170 | 0.0 | 39.70499 | 9 |
| CGGAAGA | 180 | 0.0 | 38.755646 | 1 |
| GAGCGGT | 180 | 0.0 | 37.505466 | 6 |
| AGCGGTT | 180 | 0.0 | 37.499157 | 7 |