Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379213.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 363534 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACAACATCTCGTATGCC | 1146 | 0.31523873970522703 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 125 | 0.0 | 44.99697 | 42 |
| CGGACAA | 130 | 0.0 | 43.26632 | 32 |
| CCGGACA | 130 | 0.0 | 43.26632 | 31 |
| ACCGGAC | 135 | 0.0 | 41.663868 | 30 |
| CGTATGC | 135 | 0.0 | 41.663868 | 44 |
| TCGTATG | 135 | 0.0 | 41.663868 | 43 |
| GAGCGGT | 140 | 0.0 | 40.19246 | 6 |
| AGAGCGG | 140 | 0.0 | 40.19246 | 5 |
| GCGGTTC | 140 | 0.0 | 40.186928 | 8 |
| CGGTTCA | 140 | 0.0 | 40.175873 | 9 |
| CCGAGAC | 140 | 0.0 | 40.175873 | 25 |
| CGGAAGA | 150 | 0.0 | 39.008106 | 1 |
| AGACCGG | 145 | 0.0 | 38.790497 | 28 |
| AAGAGCG | 150 | 0.0 | 37.51296 | 4 |
| AGCGGTT | 150 | 0.0 | 37.507797 | 7 |
| GAGACCG | 150 | 0.0 | 37.49748 | 27 |
| TCTCGTA | 150 | 0.0 | 37.49748 | 41 |
| GACCGGA | 155 | 0.0 | 36.287884 | 29 |
| AATGCCG | 160 | 0.0 | 35.153885 | 21 |
| GTATGCC | 165 | 0.0 | 34.088615 | 45 |