FastQCFastQC Report
Mon 6 Jun 2016
ERR1378638.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378638.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences811374
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA33360.4111544121453239No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA23400.2883996775839502No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGATGATCTCGTATGCCGTC11890.1465415455757764Illumina Paired End PCR Primer 2 (96% over 32bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTCT3500.041.1405536
TAAGCCG3550.040.561113
CGGTATT3600.039.99775324
TCGGTAT3650.039.4498423
GGCGGTC3850.038.56926335
ATTCGGT3750.038.39784221
CCGATGA3800.037.8926117
AGGCGGT3800.037.8926134
TTCGGTA3800.037.8926122
CGTCATA3800.037.8926124
AGATTCG900.037.49789410
TCGGGGA3850.037.40049714
AAGCCGA3950.037.0232414
CGATGAC3900.036.92118
AATTCGG3950.036.4536520
ACGTCAT3950.036.4536523
TTCCTCG3100.036.28828410
CTCGGGG3050.036.1455113
GCCGATG4050.036.1090816
GAATTCG4050.036.1090819