Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379141.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1394490 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATGAAATCTCGTATGCCGTC | 3806 | 0.27293132256237046 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATGAAATCTCGTATGCC | 2889 | 0.20717251468278727 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 430 | 0.0 | 39.239147 | 43 |
| ATGCCGT | 495 | 0.0 | 33.632046 | 44 |
| TGCCGTC | 510 | 0.0 | 32.64287 | 45 |
| CGTATGA | 680 | 0.0 | 25.47193 | 29 |
| CCGTATG | 690 | 0.0 | 25.102776 | 28 |
| ACCGTAT | 695 | 0.0 | 24.597631 | 27 |
| TCGTATG | 690 | 0.0 | 24.454262 | 40 |
| CGTATGC | 690 | 0.0 | 24.453386 | 41 |
| GACCGTA | 700 | 0.0 | 24.421934 | 26 |
| CTCGTAT | 710 | 0.0 | 24.082281 | 39 |
| TCTCGTA | 715 | 0.0 | 23.910442 | 38 |
| AGACCGT | 735 | 0.0 | 23.56587 | 25 |
| ATCTCGT | 730 | 0.0 | 23.422493 | 37 |
| GTATGCC | 735 | 0.0 | 22.956238 | 42 |
| GAGACCG | 795 | 0.0 | 21.50436 | 24 |
| AATCTCG | 805 | 0.0 | 21.240273 | 36 |
| GTATGAA | 890 | 0.0 | 20.219948 | 30 |
| CGGTTCA | 1060 | 0.0 | 19.123268 | 6 |
| GCGGTTC | 1080 | 0.0 | 18.769808 | 5 |
| AGAGCGG | 1100 | 0.0 | 18.642002 | 2 |