FastQCFastQC Report
Mon 6 Jun 2016
ERR1379125.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379125.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1160260
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTACGAATCTCGTATGCCGTC27380.2359815903332012Illumina Paired End PCR Primer 2 (96% over 32bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTACGAATCTCGTATGCC23930.20624687570027408Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3700.038.3050943
ATGCCGT4300.032.96019444
TGCCGTC4600.030.81061445
CGGAAGA5550.024.7612511
CGTATGC6300.022.4966441
CGGTACG6450.021.97440529
GGTACGA6700.021.49025330
TCTCGTA6600.021.47406438
ACGAATC6500.021.46110733
GTACGAA6550.021.29728131
ACCGGTA6800.021.17148227
TCGTATG6750.020.99686240
GACCGGT6750.020.99505226
CTCGTAT6800.020.84247239
CGAATCT6800.020.51429434
TACGAAT6850.020.36455532
CCGGTAC7050.020.10424628
GTATGCC7050.020.1033842
CGGCTAA1151.5993464E-719.56060817
ATCTCGT7500.019.19961437