FastQCFastQC Report
Mon 6 Jun 2016
ERR1378951.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378951.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences761620
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGGCCTGATCTCGTATGCC98531.2936897665502483Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC45770.6009558572516478Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT11710.1537512145164255Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC12000.035.8143344
CTCGTAT12100.035.5183442
GTATGCC11850.035.5081445
CGGGCCT12350.035.34361632
TCTCGTA12200.035.22489541
TCGTATG12300.034.94080743
GACCGGG12500.034.91948729
CCGGGCC12550.034.7803731
ACCGGGC12600.034.64235330
ATCTCGT12550.034.2425340
GAGACCG13050.033.4477927
AGACCGG13100.033.32012628
AGATCGG8000.032.9057717
GATCGGA8100.032.49952718
CGAGACC13650.032.1423926
ATCGGAA8200.032.1031919
CCTGATC13500.031.8328736
GCCTGAT13600.031.59880335
GATCTCG13550.031.38330539
TCGGAAG8450.031.15339320