Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378811.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 955501 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACCTAATCTCGTATGCCGTC | 2728 | 0.28550467241792526 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACCTAATCTCGTATGCC | 1745 | 0.1826267057805277 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1108 | 0.11596010888528635 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 300 | 0.0 | 43.496613 | 43 |
| ATGCCGT | 340 | 0.0 | 37.717648 | 44 |
| TGCCGTC | 345 | 0.0 | 37.171017 | 45 |
| CGTATGC | 525 | 0.0 | 24.855206 | 41 |
| CGTACCT | 535 | 0.0 | 24.812449 | 29 |
| TCTCGTA | 530 | 0.0 | 24.622011 | 38 |
| CTCGTAT | 535 | 0.0 | 24.3919 | 39 |
| CCGTACC | 545 | 0.0 | 24.357176 | 28 |
| ACCGTAC | 545 | 0.0 | 24.357176 | 27 |
| TCGTATG | 540 | 0.0 | 24.164783 | 40 |
| GACCGTA | 555 | 0.0 | 23.918306 | 26 |
| AATCTCG | 580 | 0.0 | 23.663189 | 36 |
| ATCTCGT | 570 | 0.0 | 23.28888 | 37 |
| GAGACCG | 570 | 0.0 | 23.28888 | 24 |
| AGACCGT | 570 | 0.0 | 23.28888 | 25 |
| GTACCTA | 620 | 0.0 | 21.773636 | 30 |
| GTATGCC | 610 | 0.0 | 21.391777 | 42 |
| GCGGTTC | 920 | 0.0 | 20.550482 | 5 |
| TGCCGAG | 920 | 0.0 | 20.052788 | 20 |
| GAGCGGT | 955 | 0.0 | 20.033005 | 3 |