FastQCFastQC Report
Mon 6 Jun 2016
ERR1379147.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379147.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences325845
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTAATAATCTCGTATGCC13140.40325921834000833Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT750.044.9986240
CGTATGC750.044.9986244
TCTCGTA750.044.9986241
GACCGGT800.042.18620329
AATCTCG800.042.18620339
ACCGGTA850.039.70466230
AGACCGG850.039.70466228
TCGTATG850.039.70466243
CTCGTAT900.037.49884842
CGGTAAT900.037.49884832
CCGTGGA250.002105214635.99889815
CCGGTAA950.035.52522331
GAGCGGT1000.033.7489666
ATGCCGA1000.033.74896622
AAGAGCG1050.032.151744
AGAGCGG1050.032.14685
GCGGTTC1050.032.141878
CGGTTCA1050.032.141879
TGCCGAG1050.032.1418723
AGCGGTT1100.030.6808787