FastQCFastQC Report
Mon 6 Jun 2016
ERR1379155.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379155.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527186
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGAAGATCTCGTATGCC14690.2786492812783344Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAA1500.040.49957329
GAGCGGT1550.039.1931346
GCGGTTC1600.037.968358
CGGTTCA1600.037.968359
AGACCGA1600.037.9683528
TCGTATG1600.037.9683543
CGTATGC1600.036.56211544
GAGACCG1750.035.99962227
ACCGAAG1700.035.73491730
AGCGGTT1700.035.7349177
CTCGTAT1650.035.45417442
TCTCGTA1650.035.45417441
AGAGCGG1800.033.7528425
ATCTCGT1800.033.7496440
AAGAGCG1900.031.9763814
CCGAAGA1900.031.97334731
ATGCCGA1900.031.97334722
TGCCGAG1900.031.97334723
CCGAGAC1950.031.15351925
GATCTCG2000.030.3746839