FastQCFastQC Report
Mon 6 Jun 2016
ERR1379064.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379064.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences758030
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACCG501.9808049E-631.4992627
CACCGTA300.00514675729.9992949
TCTCGTA554.1632393E-628.6356941
AGACCGG654.870708E-727.69165828
TATCTCG608.188232E-626.24938239
CCGGCCA709.302439E-725.71368431
GACCGGC709.302439E-725.71368429
CGTATGC651.5231386E-524.230244
CGGCCAA751.6967206E-623.99943732
CGGTTCA751.6967206E-623.9994379
GAGCGGT802.9697385E-622.5024416
AGAGCGG802.9697385E-622.5024415
GGCGACA500.002264212622.49947229
GCGGTTC855.026628E-621.177378
ACCGGCC855.0295002E-621.17597230
CTCGTAT754.6008085E-520.99950842
CGGAAGA908.237437E-620.0021691
AAGAGCG951.3136369E-518.9494254
AGCGGTT951.3143843E-518.9481747
TCGTATG851.2039711E-418.52897643