Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379122.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1351938 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAGAATCTCGTATGCCGTC | 3744 | 0.2769357766406447 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAGAATCTCGTATGCC | 3269 | 0.24180102933714417 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 510 | 0.0 | 36.175312 | 43 |
| ATGCCGT | 610 | 0.0 | 30.244932 | 44 |
| TGCCGTC | 660 | 0.0 | 28.294548 | 45 |
| CGTATGC | 815 | 0.0 | 22.637312 | 41 |
| CTCGTAT | 815 | 0.0 | 22.637312 | 39 |
| TAAACCG | 50 | 0.0022530905 | 22.520105 | 3 |
| TCGTATG | 840 | 0.0 | 21.963583 | 40 |
| TCTCGTA | 845 | 0.0 | 21.829582 | 38 |
| CGGAAGA | 755 | 0.0 | 21.483286 | 1 |
| GACCGTC | 870 | 0.0 | 21.201511 | 26 |
| ACCGTCG | 900 | 0.0 | 20.994667 | 27 |
| AGACCGT | 880 | 0.0 | 20.705734 | 25 |
| CCGTCGA | 945 | 0.0 | 19.99714 | 28 |
| CGAGAAT | 930 | 0.0 | 19.838074 | 32 |
| GCGGTTC | 1250 | 0.0 | 19.635353 | 5 |
| CGGTTCA | 1255 | 0.0 | 19.556398 | 6 |
| TCGAGAA | 955 | 0.0 | 19.554346 | 31 |
| GTCGAGA | 960 | 0.0 | 19.45178 | 30 |
| GTATGCC | 960 | 0.0 | 19.218132 | 42 |
| AATGCCG | 1265 | 0.0 | 19.026787 | 18 |