Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378958.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 808453 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5736 | 0.7095032116894859 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACATATCTCGTATGCCGTC | 2615 | 0.3234572696248267 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACATATCTCGTATGCC | 1427 | 0.17650995172261097 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 305 | 0.0 | 39.83908 | 43 |
| TGCCGTC | 335 | 0.0 | 37.614784 | 45 |
| ATGCCGT | 340 | 0.0 | 36.39981 | 44 |
| ATCGGAA | 810 | 0.0 | 33.887257 | 27 |
| GATCGGA | 830 | 0.0 | 33.070698 | 26 |
| AGATCGG | 840 | 0.0 | 32.409157 | 25 |
| TCGGAAG | 870 | 0.0 | 32.32603 | 28 |
| CCGAGAT | 880 | 0.0 | 31.703018 | 22 |
| CGAGATC | 940 | 0.0 | 29.918776 | 23 |
| AATGCCG | 1420 | 0.0 | 28.995085 | 18 |
| TGCCGAG | 1435 | 0.0 | 28.848785 | 20 |
| GAGATCG | 960 | 0.0 | 28.826738 | 24 |
| ATGCCGA | 1445 | 0.0 | 28.493439 | 19 |
| CGGAAGA | 1015 | 0.0 | 27.708029 | 29 |
| GCCGAGA | 1480 | 0.0 | 27.059507 | 21 |
| GAATGCC | 1545 | 0.0 | 26.649204 | 17 |
| CGTATGC | 460 | 0.0 | 26.411774 | 41 |
| TCGTATG | 480 | 0.0 | 25.78001 | 40 |
| GGAATGC | 1615 | 0.0 | 25.772755 | 16 |
| GACCGTC | 475 | 0.0 | 25.577717 | 26 |