Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379338.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 964206 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATGAATCTCGTATGCC | 1134 | 0.11760972240371871 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGAT | 170 | 0.0 | 37.05763 | 29 |
| CGTATGC | 175 | 0.0 | 36.002575 | 44 |
| TCGTATG | 185 | 0.0 | 34.056484 | 43 |
| CCGATAT | 185 | 0.0 | 34.05295 | 31 |
| ACCGATA | 185 | 0.0 | 34.05295 | 30 |
| CGATATG | 185 | 0.0 | 34.05295 | 32 |
| CTCGTAT | 195 | 0.0 | 32.31 | 42 |
| AGACCGA | 195 | 0.0 | 32.30665 | 28 |
| GTATGCC | 210 | 0.0 | 30.002144 | 45 |
| AAGAGCG | 220 | 0.0 | 28.639896 | 4 |
| AGCGGTT | 220 | 0.0 | 28.63544 | 7 |
| TCTCGTA | 220 | 0.0 | 28.63544 | 41 |
| GCGGTTC | 225 | 0.0 | 27.9991 | 8 |
| AATCTCG | 225 | 0.0 | 27.9991 | 39 |
| CCGAGAC | 235 | 0.0 | 27.76506 | 25 |
| AGAGCGG | 230 | 0.0 | 27.394682 | 5 |
| GAGCGGT | 230 | 0.0 | 27.393261 | 6 |
| GAGACCG | 230 | 0.0 | 27.39042 | 27 |
| CGGTTCA | 240 | 0.0 | 27.186623 | 9 |
| CGGAAGA | 250 | 0.0 | 26.105928 | 1 |