FastQCFastQC Report
Mon 6 Jun 2016
ERR1390616.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390616.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences255938
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC401.55682E-533.74692544
TGCCCGG352.8157994E-432.13992713
ATCTCGT501.975075E-631.49712840
TCTCGTA453.4825265E-529.99726541
CGGACAT406.156228E-428.12243732
CCGGACA406.156228E-428.12243731
ACCGGAC507.141472E-526.99753830
GAGACCG507.141472E-526.99753827
CCGAGAC507.141472E-526.99753825
TCGTATG507.141472E-526.99753843
CTCGTAT551.3649923E-424.54321742
AGACCGG551.3649923E-424.54321728
GACCGGA602.4617635E-422.4979529
AGCGGTT654.228439E-420.7673367
GTATGCC654.228439E-420.76733645
CGAGACC654.228439E-420.76733626
GCGGTTC706.967459E-419.2839578
GAGCGGT706.967459E-419.2839576
TTATGGT600.00650041518.74829117
GATCTCG901.8598328E-417.49840439