FastQCFastQC Report
Mon 6 Jun 2016
ERR1390600.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390600.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences355775
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTAT207.030281E-444.99536532
ACCGTCT250.00210622235.99629230
CTCGTAT300.005145129329.99690842
CCGTCTA300.005145129329.99690831
GACCGTC406.161422E-428.12210329
GAGCGGT450.001225626224.9974236
CGGTTCA551.3665664E-424.5429259
GCGGTTC500.002262914622.4976838
TCTCGTA500.002262914622.49768341
CCTTCGT550.003892167720.4898741
AGCGGTT550.00393362620.4524367
AGACCGT600.006505735718.74806828
ATCTCGT750.001108942917.99814440
CTAACAT800.001708889616.8732619
TATCTTC3450.015.6615674
TCTTCGT900.00374970914.9984547
GAAGCAT2101.8371793E-914.99845327
ATATCTT3750.014.4086423
AGATTCC950.005370038614.20906116
ACTAGAC1301.921929E-413.84472719