FastQCFastQC Report
Mon 6 Jun 2016
ERR1378742.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378742.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences803776
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGAGC1100.034.7711930
TCGTATG1050.034.284243
AGACCGA1150.033.259428
TATCTCG1100.032.72582639
GACCGAG1200.031.8735929
GAGACCG1250.030.59864627
TCTCGTA1250.028.79872541
GAGCGGT1350.028.337376
CTCGTAT1200.028.12375642
GCGGTTC1400.027.3202198
CGGTTCA1400.027.3202199
AGCGGTT1400.027.3202197
CGTATGC1450.026.37814344
AGAGCGG1550.026.1343785
ATCTCGT1450.024.82648840
CCGAGCA1550.024.67632731
ATGCCGA1550.024.67632722
AAGAGCG1650.024.5504784
AACTCGT551.3681133E-424.5443727
CCTTCGT1201.6370905E-1124.3845391