FastQCFastQC Report
Mon 6 Jun 2016
ERR1378805.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378805.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2198807
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTATTATCTCGTATGCCGTC24750.11256103878148468Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTATTATCTCGTATGCC23270.10583011605838984Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGT3300.032.0424144
TATGCCG3350.031.56488243
TGCCGTC3650.028.96984945
AGATCGG3300.022.49888625
GATCGGA3350.022.1630826
CGCGTAT5050.021.38605329
CCGCGTA5000.021.14991628
AATGCCG8900.020.7293118
ATGCCGA8950.020.61350419
ACCGCGT5150.020.09654827
CGTATGC5400.019.99855441
GACCGCG5200.019.9028626
CTCGTAT5450.019.81598339
TCGGAAG3900.019.03838328
TGCCGAG9700.018.78730420
ATCGGAA4050.018.33284227
AGACCGC5700.018.15699625
GCGTATT5850.018.0768530
CACGCGC750.001107475618.0077081
GAGACCG5750.017.99951724