FastQCFastQC Report
Mon 6 Jun 2016
ERR1379318.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379318.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518746
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT300.005145331429.99923142
TCTCGTA300.005145331429.99923141
AGCGGTT406.158998E-428.126997
GAGCGGT450.001225141825.001776
TCCAACG702.6978267E-522.501595
AGACCGG500.00226328622.4994228
CCAACGA754.593878E-521.0014846
ACGAAAT654.2346475E-420.7686969
CAACGAA951.3127588E-518.9487087
CCTCCGC750.001109298417.99953836
ACCTCCG800.001709430616.87456735
CGTTTCC1108.553813E-414.3233371
TACACTA1000.00754496413.49965226
AGGCCGA1400.00525054911.24971142
ACTAGAC1853.0164074E-410.94566519
CATGAGC2109.6584816E-49.6463291
TATCTTC3309.849846E-79.5461294
CTCATGC2400.00326730998.437283514
GCACTCC2450.0039359478.26509416
GAAGCAT3053.7682962E-48.11454627