FastQCFastQC Report
Mon 6 Jun 2016
ERR1390750.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390750.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1060327
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA554.1756957E-628.6265218
CTCGTAT551.3713009E-424.53701842
GACCGTC551.3713009E-424.53701829
CGTCTAT651.5276682E-524.22243932
AGATCGG751.702525E-623.99174917
CGTATGC751.702525E-623.99174944
CGTTGAA500.00226902322.49226612
CCGTCTA702.7099248E-522.49226631
TCGGAAG702.7099248E-522.49226620
ATCGGAA754.614408E-520.9927819
AGACCGT654.247776E-420.7620928
CGAAAGG908.09775E-620.043225
GCGGTTC807.582299E-519.68073328
TATCTCG600.0065142318.7479749
GAACCGC600.00652310418.74355512
GAGACCG850.002570878715.87689427
TCGTATG850.002570878715.87689443
AGCGGTT1004.1775714E-415.74458627
CCGAGAC1056.052079E-414.99484445
CGGTTCA1108.609943E-414.3132629