FastQCFastQC Report
Mon 6 Jun 2016
ERR1379053.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379053.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences778993
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC504.8772563E-835.9985628
CGTATGC602.418128E-729.99880244
GCGGTTC709.304331E-725.7132578
TCTCGTA709.304331E-725.71325741
ATCTCGT751.6970644E-623.99904340
CTCGTAT802.973742E-622.49910242
CGGTTCA802.973742E-622.4991029
GACCGCT802.973742E-622.49910229
TCGTATG802.973742E-622.49910243
AGAGCGG855.019332E-621.1810635
CATGCGC550.00392755420.4616091
ACCGCTG908.248491E-619.999230
AGCGGTT908.248491E-619.99927
ATGCCGA908.248491E-619.999222
GAGCGGT951.3124856E-518.9514776
CCGAGAC951.3153955E-518.94661125
TGCCGAG951.3153955E-518.94661123
GTATGCC1102.254943E-618.40835445
GAGACCG1002.0459624E-517.9992827
CGGCTAA1253.8309008E-717.9992817