FastQCFastQC Report
Mon 6 Jun 2016
ERR1379400.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379400.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1458022
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTGAAATCTCGTATGCC16060.11014922957266764Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGATT1850.036.4859330
CGTATGC1950.035.7711444
TCTCGTA2050.034.02387241
GACCGAT2200.032.72677229
TCGTATG2200.031.70623643
CGATTGA2200.031.70406232
CCGATTG2150.031.3948731
CTCGTAT2250.031.00165242
GAGCGGT2600.030.2890386
CGGTTCA2600.030.2879989
GCGGTTC2600.029.4226268
ATCTCGT2500.028.7995640
AGCGGTT2800.028.124577
AGAGCGG2850.027.6330555
AGACCGA2600.025.96114228
AAGAGCG3050.025.821054
CGGAAGA3000.025.5022341
TGCCGAG3000.023.99963223
GAGACCG2900.023.27550727
ATGCCGA3100.023.22545222