Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379178.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 338348 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCCATCTCGTATGCC | 1061 | 0.31358246539066287 | Illumina Paired End PCR Primer 2 (97% over 38bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 125 | 0.0 | 43.2 | 44 |
| ACCGATA | 120 | 0.0 | 43.125004 | 30 |
| GACCGAT | 115 | 0.0 | 43.04348 | 29 |
| CTCGTAT | 130 | 0.0 | 41.53846 | 42 |
| AGCGGTT | 130 | 0.0 | 41.53846 | 7 |
| TCTCGTA | 130 | 0.0 | 41.53846 | 41 |
| TCGTATG | 130 | 0.0 | 41.53846 | 43 |
| CCGATAT | 125 | 0.0 | 41.4 | 31 |
| AGACCGA | 120 | 0.0 | 41.250004 | 28 |
| CCGAGAC | 120 | 0.0 | 41.250004 | 25 |
| GCGGTTC | 135 | 0.0 | 40.0 | 8 |
| AGAGCGG | 135 | 0.0 | 40.0 | 5 |
| CGGTTCA | 140 | 0.0 | 38.571426 | 9 |
| GAGCGGT | 140 | 0.0 | 38.571426 | 6 |
| CGATATC | 140 | 0.0 | 38.571426 | 32 |
| AAGAGCG | 145 | 0.0 | 37.24138 | 4 |
| ATGCCGA | 145 | 0.0 | 37.24138 | 22 |
| TGCCGAG | 140 | 0.0 | 36.964283 | 23 |
| CGGAAGA | 150 | 0.0 | 36.0 | 1 |
| ATCTCGT | 150 | 0.0 | 36.0 | 40 |