Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378900.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 966615 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCACGCATCTCGTATGCC | 9109 | 0.9423607123829033 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 4418 | 0.45705891176942215 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1005 | 0.10397107431604102 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACGCATC | 1120 | 0.0 | 36.16038 | 36 |
| CGCATCT | 1115 | 0.0 | 36.120743 | 37 |
| CGCCACG | 1155 | 0.0 | 36.03863 | 32 |
| GCCACGC | 1180 | 0.0 | 35.46578 | 33 |
| CACGCAT | 1165 | 0.0 | 35.34302 | 35 |
| TCTCGTA | 1130 | 0.0 | 35.043926 | 41 |
| CCACGCA | 1190 | 0.0 | 34.789597 | 34 |
| GACCGCC | 1205 | 0.0 | 34.54325 | 29 |
| CATCTCG | 1165 | 0.0 | 34.184235 | 39 |
| CCGCCAC | 1225 | 0.0 | 34.16295 | 31 |
| CTCGTAT | 1160 | 0.0 | 34.13762 | 42 |
| ATCTCGT | 1170 | 0.0 | 34.03815 | 40 |
| ACCGCCA | 1225 | 0.0 | 33.97928 | 30 |
| AGACCGC | 1225 | 0.0 | 33.97928 | 28 |
| CGTATGC | 1185 | 0.0 | 33.797157 | 44 |
| GTATGCC | 1195 | 0.0 | 33.51434 | 45 |
| TCGTATG | 1195 | 0.0 | 33.51434 | 43 |
| GAGACCG | 1245 | 0.0 | 33.433426 | 27 |
| GCATCTC | 1260 | 0.0 | 31.428284 | 38 |
| CGAGACC | 1375 | 0.0 | 30.108814 | 26 |