FastQCFastQC Report
Mon 6 Jun 2016
ERR1378737.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378737.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484601
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTCG207.009888E-445.025192
TCTCGTA302.1637807E-644.9973241
GTAGACG403.4543154E-739.37265433
GCGGTTC458.6901673E-734.9979138
GAGACCG458.6901673E-734.99791327
CGTAGAC458.6901673E-734.99791332
CCGAGAC458.6901673E-734.99791325
GACGATC458.6901673E-734.99791336
ATCTCGT401.5593483E-533.7479940
CGGTTCA501.9794134E-631.4981219
CAGCGCG300.005145855729.9982137
CTCGTAT453.4881406E-529.9982142
CCGTAGA602.4153633E-729.9982131
GACCGTA554.160336E-628.63465529
AGACGAT554.160336E-628.63465535
AGACCGT554.160336E-628.63465528
CGTATGC507.152903E-526.9983944
TCGTATG507.152903E-526.9983943
CGGAAGA608.143303E-626.2646961
TAGACGA651.5220918E-524.22932634