Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390780.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 458428 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 884 | 0.19283289851405236 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 55 | 1.12821E-7 | 32.717278 | 42 |
| CGGCATG | 55 | 1.12821E-7 | 32.717278 | 32 |
| ACCGGCA | 60 | 2.4200745E-7 | 29.990839 | 30 |
| CCGGCAT | 60 | 2.4200745E-7 | 29.990839 | 31 |
| GACCGGC | 60 | 2.4200745E-7 | 29.990839 | 29 |
| GATCGGA | 100 | 1.8189894E-12 | 29.241068 | 18 |
| AGACCGG | 70 | 2.8867362E-8 | 28.919739 | 28 |
| TCGGAAG | 105 | 3.6379788E-12 | 27.848635 | 20 |
| CGTATGC | 65 | 4.8756374E-7 | 27.68385 | 44 |
| TCTCGTA | 65 | 4.8756374E-7 | 27.68385 | 41 |
| ATCTCGT | 75 | 5.6403223E-8 | 26.991753 | 40 |
| ATCGGAA | 115 | 9.094947E-12 | 25.427015 | 19 |
| AGATCGG | 120 | 1.6370905E-11 | 24.367556 | 17 |
| TCGTATG | 75 | 1.698445E-6 | 23.99267 | 43 |
| GAGACCG | 90 | 3.2876778E-7 | 22.493128 | 27 |
| CGAGATC | 145 | 9.094947E-12 | 21.717503 | 15 |
| CCCGGGT | 55 | 0.0039399476 | 20.448298 | 45 |
| CCGAGAC | 155 | 2.3646862E-11 | 20.316376 | 45 |
| CGGAAGA | 150 | 3.43789E-10 | 19.494043 | 21 |
| GTATGCC | 95 | 1.3164772E-5 | 18.941582 | 45 |