Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379121.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 914199 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACGAGTATCTCGTATGCC | 3819 | 0.4177427452884985 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACGAGTATCTCGTATGCCGTC | 2983 | 0.3262965721905187 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 340 | 0.0 | 39.040794 | 43 |
| ATGCCGT | 395 | 0.0 | 33.604733 | 44 |
| TGCCGTC | 475 | 0.0 | 28.418634 | 45 |
| CGGAAGA | 755 | 0.0 | 27.155521 | 1 |
| CGTATGC | 795 | 0.0 | 25.469532 | 44 |
| CTCGTAT | 800 | 0.0 | 25.310347 | 42 |
| ACGAGTA | 820 | 0.0 | 25.241755 | 34 |
| CGAGTAT | 825 | 0.0 | 25.088776 | 35 |
| TCTCGTA | 820 | 0.0 | 24.69302 | 41 |
| TCGTATG | 820 | 0.0 | 24.69302 | 43 |
| GACGAGT | 840 | 0.0 | 24.640759 | 33 |
| GACCGAC | 865 | 0.0 | 24.188692 | 29 |
| AGACCGA | 870 | 0.0 | 24.048363 | 28 |
| TATCTCG | 845 | 0.0 | 23.962458 | 39 |
| ACCGACG | 865 | 0.0 | 23.9286 | 30 |
| ATCTCGT | 880 | 0.0 | 23.776386 | 40 |
| GTATGCC | 860 | 0.0 | 23.544506 | 45 |
| GAGTATC | 910 | 0.0 | 22.744074 | 36 |
| GAGACCG | 945 | 0.0 | 22.376598 | 27 |
| CCGACGA | 940 | 0.0 | 22.019402 | 31 |