Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379194.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 451528 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGATCATCTCGTATGCC | 1575 | 0.3488155773285378 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 185 | 0.0 | 43.78206 | 42 |
| GACCGTT | 190 | 0.0 | 42.629898 | 29 |
| CCGTTGA | 190 | 0.0 | 42.629898 | 31 |
| ATCTCGT | 195 | 0.0 | 41.536827 | 40 |
| CGTATGC | 195 | 0.0 | 41.536827 | 44 |
| TCTCGTA | 195 | 0.0 | 41.536827 | 41 |
| AGACCGT | 195 | 0.0 | 41.536827 | 28 |
| ACCGTTG | 195 | 0.0 | 41.536827 | 30 |
| CATCTCG | 205 | 0.0 | 40.60816 | 39 |
| GAGACCG | 200 | 0.0 | 40.498405 | 27 |
| TCGTATG | 205 | 0.0 | 39.51064 | 43 |
| CGTTGAT | 220 | 0.0 | 37.83942 | 32 |
| CGAGACC | 225 | 0.0 | 36.998543 | 26 |
| GCGGTTC | 220 | 0.0 | 36.82081 | 8 |
| GTATGCC | 220 | 0.0 | 36.81673 | 45 |
| GATCATC | 225 | 0.0 | 35.998585 | 36 |
| CCGAGAC | 230 | 0.0 | 35.216003 | 25 |
| AGAGCGG | 240 | 0.0 | 34.693817 | 5 |
| CGGAAGA | 245 | 0.0 | 33.985783 | 1 |
| AGCGGTT | 240 | 0.0 | 33.752407 | 7 |