Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378951.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 761620 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGGCCTGATCTCGTATGCC | 9853 | 1.2936897665502483 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 4577 | 0.6009558572516478 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1171 | 0.1537512145164255 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 1200 | 0.0 | 35.81433 | 44 |
| CTCGTAT | 1210 | 0.0 | 35.51834 | 42 |
| GTATGCC | 1185 | 0.0 | 35.50814 | 45 |
| CGGGCCT | 1235 | 0.0 | 35.343616 | 32 |
| TCTCGTA | 1220 | 0.0 | 35.224895 | 41 |
| TCGTATG | 1230 | 0.0 | 34.940807 | 43 |
| GACCGGG | 1250 | 0.0 | 34.919487 | 29 |
| CCGGGCC | 1255 | 0.0 | 34.78037 | 31 |
| ACCGGGC | 1260 | 0.0 | 34.642353 | 30 |
| ATCTCGT | 1255 | 0.0 | 34.24253 | 40 |
| GAGACCG | 1305 | 0.0 | 33.44779 | 27 |
| AGACCGG | 1310 | 0.0 | 33.320126 | 28 |
| AGATCGG | 800 | 0.0 | 32.90577 | 17 |
| GATCGGA | 810 | 0.0 | 32.499527 | 18 |
| CGAGACC | 1365 | 0.0 | 32.14239 | 26 |
| ATCGGAA | 820 | 0.0 | 32.10319 | 19 |
| CCTGATC | 1350 | 0.0 | 31.83287 | 36 |
| GCCTGAT | 1360 | 0.0 | 31.598803 | 35 |
| GATCTCG | 1355 | 0.0 | 31.383305 | 39 |
| TCGGAAG | 845 | 0.0 | 31.153393 | 20 |