Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378612.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 758530 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2714 | 0.3577973184976204 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1977 | 0.26063570326816343 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGGGGA | 270 | 0.0 | 41.664288 | 14 |
| TCGGTAT | 285 | 0.0 | 41.050285 | 23 |
| GCGGTCT | 285 | 0.0 | 40.26351 | 36 |
| TTCGGTA | 290 | 0.0 | 39.566708 | 22 |
| GGCGGTC | 295 | 0.0 | 38.898643 | 35 |
| CCGATGA | 255 | 0.0 | 38.821312 | 17 |
| TAAGCCG | 255 | 0.0 | 38.821312 | 13 |
| CTCGGGG | 230 | 0.0 | 38.149998 | 13 |
| TGACGTC | 260 | 0.0 | 38.074745 | 21 |
| ACGTCAT | 260 | 0.0 | 38.074745 | 23 |
| ATTCGGT | 305 | 0.0 | 37.6208 | 21 |
| AATTCGG | 305 | 0.0 | 37.6208 | 20 |
| CGTCATA | 265 | 0.0 | 37.358818 | 24 |
| GACGTCA | 265 | 0.0 | 37.356354 | 22 |
| CGGTATT | 315 | 0.0 | 37.143185 | 24 |
| AAGCCGA | 275 | 0.0 | 35.997944 | 14 |
| GAATTCG | 320 | 0.0 | 35.85969 | 19 |
| CGGGGAA | 315 | 0.0 | 35.712246 | 15 |
| TATGCCG | 120 | 0.0 | 35.622963 | 43 |
| GCCGATG | 280 | 0.0 | 35.35512 | 16 |