Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378843.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1064273 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4006 | 0.37640718124015177 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTGATATCTCGTATGCCGTC | 3389 | 0.3184333343042622 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTGATATCTCGTATGCC | 2700 | 0.253694305878285 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 430 | 0.0 | 37.147243 | 43 |
| ATGCCGT | 440 | 0.0 | 36.30299 | 44 |
| TGCCGTC | 505 | 0.0 | 31.630327 | 45 |
| ATCGGAA | 570 | 0.0 | 29.59797 | 27 |
| GATCGGA | 575 | 0.0 | 29.340597 | 26 |
| TCGGAAG | 580 | 0.0 | 29.091759 | 28 |
| AGATCGG | 610 | 0.0 | 27.659718 | 25 |
| AATGCCG | 1300 | 0.0 | 24.743902 | 18 |
| ATGCCGA | 1330 | 0.0 | 24.188042 | 19 |
| TGCCGAG | 1345 | 0.0 | 24.085546 | 20 |
| CGTATGC | 695 | 0.0 | 22.983187 | 41 |
| CTCGTAT | 695 | 0.0 | 22.983187 | 39 |
| TCGTATG | 690 | 0.0 | 22.82368 | 40 |
| CCGAGAT | 730 | 0.0 | 22.80474 | 22 |
| GAGATCG | 735 | 0.0 | 22.649607 | 24 |
| GTATGCC | 710 | 0.0 | 22.180758 | 42 |
| TATCTCG | 725 | 0.0 | 22.033194 | 36 |
| TCTCGTA | 720 | 0.0 | 21.871664 | 38 |
| GACCGCT | 710 | 0.0 | 21.860807 | 26 |
| GCCGAGA | 1470 | 0.0 | 21.731379 | 21 |