FastQCFastQC Report
Mon 6 Jun 2016
ERR1379254.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379254.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences705623
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGCGG501.979406E-631.5015875
GAGCGGT501.980503E-631.4993536
CGTATGC453.4877536E-530.0015144
TCTCGTA453.4877536E-530.0015141
GCGGTTC453.4894416E-529.9993868
ACCGCTC453.4894416E-529.99938630
CCTTCGT856.4592314E-926.4756761
AGACCGC551.3676615E-424.54495228
CGGAAGA651.5204034E-524.2354261
AAGAGCG651.5220738E-524.231994
GACCGCT651.5229094E-524.23027229
CTCGTAT602.465359E-422.50113342
CCGCTCC602.466542E-422.49953831
AATGCCG602.466542E-422.49953821
CGCTCCA602.466542E-422.4995389
TATCTCG602.466542E-422.49953839
CCGAGAC602.466542E-422.49953825
AGCGGTT754.6001252E-520.9995697
TGCCGAG754.6001252E-520.99956923
CGGTTCA654.236582E-420.7688069