Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379373.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 703759 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCC | 1531 | 0.21754606335407434 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGGATA | 240 | 0.0 | 41.24909 | 31 |
| CGGATAC | 240 | 0.0 | 41.24909 | 32 |
| TACGATC | 235 | 0.0 | 41.172226 | 36 |
| CTCGTAT | 250 | 0.0 | 39.601936 | 42 |
| GATACGA | 245 | 0.0 | 39.488922 | 34 |
| GGATACG | 255 | 0.0 | 38.822674 | 33 |
| ACCGGAT | 265 | 0.0 | 38.2067 | 30 |
| ATCTCGT | 260 | 0.0 | 38.078785 | 40 |
| TCTCGTA | 260 | 0.0 | 38.078785 | 41 |
| CGTATGC | 255 | 0.0 | 37.945732 | 44 |
| GACCGGA | 265 | 0.0 | 37.357662 | 29 |
| TCGTATG | 260 | 0.0 | 37.213356 | 43 |
| AGACCGG | 280 | 0.0 | 36.159916 | 28 |
| ACGATCT | 275 | 0.0 | 35.183537 | 37 |
| ATACGAT | 275 | 0.0 | 35.183537 | 35 |
| CGGAAGA | 280 | 0.0 | 34.555264 | 1 |
| GCGGTTC | 300 | 0.0 | 32.99927 | 8 |
| GAGCGGT | 300 | 0.0 | 32.99927 | 6 |
| AGAGCGG | 300 | 0.0 | 32.99927 | 5 |
| GAGACCG | 320 | 0.0 | 32.343037 | 27 |