Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379356.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 784635 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTCTAATCTCGTATGCC | 1642 | 0.2092692780719698 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 200 | 0.0 | 38.25211 | 44 |
| TCTCGTA | 190 | 0.0 | 37.894413 | 41 |
| TCGTATG | 205 | 0.0 | 37.319138 | 43 |
| AGACCGT | 210 | 0.0 | 36.42826 | 28 |
| GAGACCG | 225 | 0.0 | 33.999714 | 27 |
| CTCGTAT | 215 | 0.0 | 33.490223 | 42 |
| ATCTCGT | 225 | 0.0 | 32.99972 | 40 |
| GAGCGGT | 235 | 0.0 | 32.552917 | 6 |
| GACCGTG | 240 | 0.0 | 31.874731 | 29 |
| CGGTTCA | 260 | 0.0 | 30.288204 | 9 |
| ACGGATT | 30 | 0.005146488 | 29.999746 | 19 |
| CCCGCGC | 30 | 0.005146488 | 29.999746 | 12 |
| AAGAGCG | 255 | 0.0 | 29.999744 | 4 |
| AGCGGTT | 265 | 0.0 | 29.716728 | 7 |
| CGTGTCT | 265 | 0.0 | 29.716728 | 32 |
| CGGAAGA | 235 | 0.0 | 29.682491 | 1 |
| GCGGTTC | 275 | 0.0 | 28.636122 | 8 |
| AGAGCGG | 270 | 0.0 | 28.333094 | 5 |
| GTATGCC | 275 | 0.0 | 27.819717 | 45 |
| CCGTGTC | 275 | 0.0 | 27.817945 | 31 |