Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379169.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 483456 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTACATCTCGTATGCC | 1003 | 0.20746458829759068 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 125 | 0.0 | 43.199303 | 42 |
| GAGACCG | 125 | 0.0 | 43.199303 | 27 |
| AGACCGT | 130 | 0.0 | 41.537792 | 28 |
| CGTATGC | 135 | 0.0 | 39.99936 | 44 |
| TCTCGTA | 135 | 0.0 | 39.99936 | 41 |
| GCGGTTC | 140 | 0.0 | 38.5748 | 8 |
| GACCGTG | 135 | 0.0 | 38.332718 | 29 |
| AGCGGTT | 145 | 0.0 | 37.244633 | 7 |
| GAGCGGT | 145 | 0.0 | 37.244633 | 6 |
| TCGTATG | 145 | 0.0 | 37.240784 | 43 |
| CGTGTTA | 140 | 0.0 | 36.963688 | 32 |
| ACCGTGT | 155 | 0.0 | 36.289738 | 30 |
| ATGCCGA | 155 | 0.0 | 36.289738 | 22 |
| ATCTCGT | 150 | 0.0 | 35.99942 | 40 |
| CATCTCG | 155 | 0.0 | 34.838146 | 39 |
| AATGCCG | 155 | 0.0 | 34.838146 | 21 |
| CCGAGAC | 155 | 0.0 | 34.838146 | 25 |
| AGAGCGG | 160 | 0.0 | 33.75295 | 5 |
| CGGAAGA | 160 | 0.0 | 33.749454 | 1 |
| CGGTTCA | 160 | 0.0 | 33.749454 | 9 |