Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378950.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 857797 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGGAATATCTCGTATGCC | 11221 | 1.3081183543425776 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 5143 | 0.5995591031444503 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1261 | 0.1470044777493976 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGCGGAA | 1435 | 0.0 | 37.94361 | 32 |
| CCGCGGA | 1435 | 0.0 | 37.78682 | 31 |
| TATCTCG | 1390 | 0.0 | 37.555515 | 39 |
| GCGGAAT | 1460 | 0.0 | 37.293896 | 33 |
| CGGAATA | 1470 | 0.0 | 36.887135 | 34 |
| GACCGCG | 1470 | 0.0 | 36.734077 | 29 |
| TCTCGTA | 1415 | 0.0 | 36.732967 | 41 |
| CTCGTAT | 1425 | 0.0 | 36.475197 | 42 |
| CGTATGC | 1445 | 0.0 | 36.43537 | 44 |
| ACCGCGG | 1495 | 0.0 | 36.42079 | 30 |
| GAGACCG | 1490 | 0.0 | 36.392006 | 27 |
| ATCTCGT | 1430 | 0.0 | 36.347664 | 40 |
| AGACCGC | 1495 | 0.0 | 36.27029 | 28 |
| GTATGCC | 1455 | 0.0 | 35.721046 | 45 |
| TCGTATG | 1480 | 0.0 | 35.573727 | 43 |
| CGAGACC | 1635 | 0.0 | 33.16458 | 26 |
| ATATCTC | 1615 | 0.0 | 32.462643 | 38 |
| AGATCGG | 860 | 0.0 | 30.871572 | 17 |
| GAATATC | 1730 | 0.0 | 30.564852 | 36 |
| GGAATAT | 1745 | 0.0 | 30.558224 | 35 |