FastQCFastQC Report
Mon 6 Jun 2016
ERR1378706.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378706.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences795562
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT356.235927E-638.5803766
CCGATAT356.249398E-638.5682531
GTCGCAT250.002107571335.99703631
CTCGTAT453.49147E-529.99752842
ACCGATA453.49147E-529.99752830
AGGTTCG300.00514839129.99752822
CGCCCCA300.00514839129.99752835
TCTCGTA551.3684505E-424.54343441
GCGGTTC651.5217327E-524.2333438
AAGAGCG602.4616657E-422.5066344
AGCGGTT602.4648104E-422.502397
CGGTTCA602.4679585E-422.4981469
GACCGAT602.4679585E-422.49814629
TCGTATG602.4679585E-422.49814643
CCTTCGT1056.0666935E-821.440281
AGAGCGG654.2282292E-420.7753545
GAGACCG654.2390067E-420.7675227
AGACCGA654.2390067E-420.7675228
CGATATG654.2390067E-420.7675232
TCGTGCC550.003930205520.459296