Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379290.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 640099 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCTTCTATCTCGTATGCC | 1260 | 0.19684455060857775 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGTATG | 145 | 0.0 | 40.34329 | 43 |
| CGTATGC | 150 | 0.0 | 38.99851 | 44 |
| CTCGTAT | 150 | 0.0 | 37.498566 | 42 |
| TCTCGTA | 160 | 0.0 | 35.154907 | 41 |
| TATCTCG | 170 | 0.0 | 33.089558 | 39 |
| GTATGCC | 195 | 0.0 | 29.998856 | 45 |
| ATCTCGT | 195 | 0.0 | 28.845053 | 40 |
| AGAGCGG | 215 | 0.0 | 28.256943 | 5 |
| AAGAGCG | 215 | 0.0 | 27.214642 | 4 |
| CGGAAGA | 225 | 0.0 | 27.007406 | 1 |
| GAGCGGT | 220 | 0.0 | 26.59197 | 6 |
| GAGACCG | 225 | 0.0 | 25.999004 | 27 |
| CGGTTCA | 235 | 0.0 | 25.850075 | 9 |
| AGCGGTT | 230 | 0.0 | 25.433811 | 7 |
| AATGCCG | 230 | 0.0 | 25.433811 | 21 |
| CCGAGAC | 250 | 0.0 | 22.499142 | 25 |
| AGACCGC | 270 | 0.0 | 21.66584 | 28 |
| TGCCGAG | 265 | 0.0 | 21.225603 | 23 |
| GTTCAGC | 330 | 0.0 | 20.453764 | 11 |
| ACCGCCT | 300 | 0.0 | 20.249226 | 30 |