Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378600.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 687132 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4407 | 0.6413614851294948 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3372 | 0.4907354045510906 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTATGATCTCGTATGCCGTC | 825 | 0.12006426712771345 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 555 | 0.0 | 41.34995 | 13 |
| CGTCATA | 585 | 0.0 | 39.998642 | 24 |
| CCGATGA | 580 | 0.0 | 39.95554 | 17 |
| ATGACGT | 585 | 0.0 | 39.614037 | 20 |
| TGACGTC | 590 | 0.0 | 39.278324 | 21 |
| CGATGAC | 590 | 0.0 | 39.278324 | 18 |
| AGCCGAT | 590 | 0.0 | 38.896984 | 15 |
| ACGTCAT | 600 | 0.0 | 38.62369 | 23 |
| GACGTCA | 610 | 0.0 | 37.99051 | 22 |
| GATGACG | 610 | 0.0 | 37.99051 | 19 |
| TATAAGC | 605 | 0.0 | 37.9326 | 11 |
| CGGTATT | 500 | 0.0 | 37.798717 | 24 |
| AAGCCGA | 620 | 0.0 | 37.014874 | 14 |
| TCGGTAT | 500 | 0.0 | 36.898746 | 23 |
| TCGGGGA | 510 | 0.0 | 36.6164 | 14 |
| GACCCTT | 635 | 0.0 | 36.494823 | 39 |
| TCATAAC | 630 | 0.0 | 36.427334 | 26 |
| TTCGGTA | 510 | 0.0 | 36.175243 | 22 |
| GGTATCG | 25 | 0.0021068715 | 35.998775 | 13 |
| GGATTTA | 645 | 0.0 | 35.585365 | 6 |