FastQCFastQC Report
Mon 6 Jun 2016
ERR1390627.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390627.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1664170
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCTAA300.00515455829.99208514
CGACGAG300.005155315629.99118636
AATGCGA1053.6379788E-1227.84895934
GACCGAA1150.027.38243129
CGTATGC1250.026.99044644
GAATGCG1252.910383E-1123.39312433
TCGTATG1450.023.26762643
AGACCGA1405.456968E-1222.49406428
CTCGTAT1305.0931703E-1122.49203942
GTGCGTA500.00226969622.49203932
ATGCGAT1401.382432E-1020.88671935
CCGAATG1452.2009772E-1020.16527631
ACCGAAT1603.8198777E-1119.68112630
ATCTCGT1503.4742698E-1019.493140
TCTCGTA1503.4742698E-1019.493141
CGAATGC1555.366019E-1018.8642932
GATCGGA851.20756915E-418.52396818
AGCGCTC1608.203642E-1018.2758797
ACACCCG750.001112474617.99525312
GAGACCG1953.45608E-1117.30312727