Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378621.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 808500 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3595 | 0.4446505875077304 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2567 | 0.31750154607297465 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 80 | 0.0 | 42.183674 | 43 |
| GGCGGTC | 340 | 0.0 | 41.025692 | 35 |
| ATTCGGT | 335 | 0.0 | 40.966434 | 21 |
| AATTCGG | 335 | 0.0 | 40.966434 | 20 |
| CGTCATA | 375 | 0.0 | 40.798824 | 24 |
| CGGTATT | 340 | 0.0 | 40.366486 | 24 |
| CGGGGAA | 340 | 0.0 | 40.363987 | 15 |
| TTCGGTA | 340 | 0.0 | 40.363987 | 22 |
| TCGGTAT | 345 | 0.0 | 39.779 | 23 |
| TAAGCCG | 385 | 0.0 | 39.736652 | 13 |
| ACGTCAT | 390 | 0.0 | 39.22721 | 23 |
| AGGCGGT | 350 | 0.0 | 39.213154 | 34 |
| GACGTCA | 395 | 0.0 | 38.730663 | 22 |
| TGACGTC | 395 | 0.0 | 38.730663 | 21 |
| ATGACGT | 395 | 0.0 | 38.730663 | 20 |
| CGGTCTC | 355 | 0.0 | 38.658466 | 37 |
| CCGATGA | 400 | 0.0 | 38.24653 | 17 |
| GCCGATG | 405 | 0.0 | 37.774353 | 16 |
| GCGGTCT | 365 | 0.0 | 37.599327 | 36 |
| GAATTCG | 365 | 0.0 | 37.599327 | 19 |