FastQCFastQC Report
Mon 6 Jun 2016
ERR1378591.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378591.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1023646
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA39600.38685248611336337No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA29850.29160471491120954No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGACGTC4150.041.74458721
TAAGCCG4100.041.15616613
CGTCATA4350.039.82529424
GACGTCA4450.039.43593222
AGCCGAT4300.039.2419315
AGGCGGT4100.038.9611734
TTCGGTA4100.038.9611722
AATTCGG4150.037.94962320
GAATTCG4150.037.94962319
GCCGATG4600.037.17177216
CGATGAC4600.037.17177218
GGCGGTC4300.037.14902535
TCGGTAT4300.037.14902523
ATTCGGT4250.037.0566921
ATGACGT4750.036.94524420
ACGTCAT4750.036.94524423
TCGGGGA4350.036.72202714
CGGTATT4350.036.72202724
CCTCGGG3700.036.48438612
GATGACG4650.036.28823519