FastQCFastQC Report
Mon 6 Jun 2016
ERR1378954.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378954.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences935642
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT45330.48448017510971075Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATAGAATCTCGTATGCCGTC23450.2506300486724623Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG6800.034.7406728
TATGCCG2700.034.170243
ATCGGAA6700.033.24437327
GATCGGA6650.033.15600626
AGATCGG6750.032.9981225
CCGTATA2950.031.26940328
CGTATAG3000.030.74824529
GACCGTA3000.030.74824526
GCGACTA300.00514820929.99829323
TGCCGAG11250.029.9982920
CGGAAGA7900.029.90335829
ATGCCGA11550.029.41390819
ATGCCGT3150.029.2887444
ACCGTAT3150.029.28404427
AATGCCG11750.028.91324618
TGCCGTC3300.027.95743445
CCGAGAT8500.027.79253222
CTCGTAT3350.027.53574239
GAATGCC12550.027.07017117
TCGTATG3450.026.73760840