FastQCFastQC Report
Mon 6 Jun 2016
ERR1390742.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390742.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences685384
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC501.983335E-631.4933628
TGTCGTT300.00514929529.99586518
CTCGTAT554.1709136E-628.6282442
TCTCGTA554.1709136E-628.6282441
CGCATAC608.198651E-626.24446732
GACCGCA608.198651E-626.24446729
GAGACCG608.198651E-626.24446727
CGTATGC608.203297E-626.24255244
CCGCATA651.5250724E-524.22566231
TCGTATG651.5259344E-524.22389643
ATCTCGT702.7038139E-522.49689940
TATCTCG702.7038139E-522.49689939
ACCGCAT754.606627E-520.99557330
CGTGAGC706.9210806E-419.3098261
CCGCCAC706.9860095E-419.28305616
GAGCGGT901.8444953E-417.524446
AGAGCGG1053.072425E-517.1667985
CCGAGAC1104.644393E-516.35899425
AAGAGCG1004.124577E-415.7696914
CGGAAGA1055.9755135E-415.0187541