FastQCFastQC Report
Mon 6 Jun 2016
ERR1379205.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379205.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389821
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTCTAATCTCGTATGCC25810.6620987581479705Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT3350.043.65596842
GACCGGT3350.043.65596829
TCTCGTA3400.043.0139741
TCGTATG3500.042.42784543
ATCTCGT3450.042.3905840
ACCGGTT3450.042.3905830
CGTATGC3450.042.3905844
CGGTTCT3450.042.3905832
AGACCGG3450.042.3905828
CCGGTTC3500.041.78531
GAGACCG3600.040.62430227
GGTTCTA3650.040.06780633
AATCTCG3750.039.59932339
GTATGCC3700.039.52635245
CCGAGAC3700.038.91825525
GCGGTTC4000.037.1243678
CGGTTCA4000.037.1243679
GTTCTAA3950.037.02468534
AGAGCGG4150.036.329345
GAGCGGT4150.036.324686