FastQCFastQC Report
Mon 6 Jun 2016
ERR1379193.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379193.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443158
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGATTATCTCGTATGCC15750.3554037160561244Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGCT2100.043.92703229
CGTATGC2050.043.90089844
GCGGTTC2100.042.8604778
CGCTGAT2100.042.8556432
GAGACCG2100.042.8556427
TATCTCG2100.042.8556439
CTCGTAT2150.041.85899442
ACCGCTG2150.041.85899430
AGACCGC2150.041.85899428
AGAGCGG2200.040.916895
AGCGGTT2200.040.912277
CGGTTCA2200.040.9076549
CCGCTGA2200.040.90765431
TCTCGTA2200.040.90765441
TCGTATG2200.040.90765443
CCGAGAC2300.040.10728525
GAGCGGT2250.040.003116
CGGAAGA2400.039.3825071
ATCTCGT2300.039.1290640
AAGAGCG2400.038.4448284