FastQCFastQC Report
Mon 6 Jun 2016
ERR1390748.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390748.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences630277
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGTAG300.005153418529.99058332
GACCGTA507.168656E-526.99152629
CGTAGTC507.168656E-526.99152632
ACCGTAG551.3701608E-424.5377530
CGTATGC551.3708988E-424.53580544
GCGCTCC651.5250995E-524.2250888
AGCGCTC602.469711E-422.4947227
TATCTCG602.4710377E-422.49293739
CTCGTAT602.4723652E-422.49115442
TCGTATG602.4723652E-422.49115443
AGATCGG754.6038967E-520.99674217
AGACCGT654.2442846E-420.76271228
TCTCGTA654.246558E-420.76106641
CCTTCGT908.0954305E-620.0414261
GATCGGA851.20477736E-418.52653718
TCGGAAG851.2069783E-418.52212720
ACGGGAT1002.046983E-517.99720613
ATCTCGT750.001111805917.9943540
CCGTAGT750.001111805917.9943531
GAGACCG750.001111805917.9943527