FastQCFastQC Report
Mon 6 Jun 2016
ERR1379352.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379352.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1236371
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATGTATCTCGTATGCC34510.27912333757423946Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTC4300.040.81362529
CGTATGC4250.040.76437444
CTCGTAT4400.039.8860442
TCTCGTA4450.039.4378841
TCGTATG4500.038.99968743
CGTCATG4550.038.57111732
AGACCGT4600.038.15186328
TATCTCG4650.037.74162739
ACCGTCA4900.035.81603630
ATCTCGT5000.035.09971640
CCGTCAT5100.034.41148831
GAGACCG5150.034.07739627
GTATGCC5350.032.38291545
CCGAGAC5600.031.33903325
GAGCGGT5900.029.364176
CGGTTCA6100.029.1391099
GCGGTTC5950.029.117418
GTATCTC6150.028.53635438
AGAGCGG6150.027.8057795
CGGAAGA6400.027.7765851