Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378784.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 746808 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCACAATCTCGTATGCCGTC | 1940 | 0.2597722573941361 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCACAATCTCGTATGCC | 1375 | 0.1841169350087305 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 265 | 0.0 | 39.90269 | 43 |
| TGCCGTC | 265 | 0.0 | 39.90269 | 45 |
| ATGCCGT | 280 | 0.0 | 38.56856 | 44 |
| GATCGGA | 145 | 0.0 | 26.377348 | 26 |
| TCGGAAG | 165 | 0.0 | 24.543629 | 28 |
| CTCGTAT | 450 | 0.0 | 23.498253 | 39 |
| AGATCGG | 165 | 0.0 | 23.180094 | 25 |
| ATCGGAA | 165 | 0.0 | 23.180094 | 27 |
| AATGCCG | 615 | 0.0 | 23.047068 | 18 |
| ATGCCGA | 615 | 0.0 | 23.047068 | 19 |
| TGCCGAG | 615 | 0.0 | 23.047068 | 20 |
| GACCGTT | 455 | 0.0 | 22.74556 | 26 |
| TCTCGTA | 465 | 0.0 | 22.740244 | 38 |
| TCGTATG | 465 | 0.0 | 22.740244 | 40 |
| CGGAAGA | 400 | 0.0 | 22.5134 | 1 |
| CGTATGC | 470 | 0.0 | 22.498325 | 41 |
| ACCGTTC | 460 | 0.0 | 22.498325 | 27 |
| ATCTCGT | 480 | 0.0 | 22.498323 | 37 |
| CGGTTCA | 685 | 0.0 | 22.34308 | 6 |
| CCGTTCA | 465 | 0.0 | 22.256409 | 28 |