Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379396.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 808888 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTAAGATCTCGTATGCC | 1063 | 0.13141497957690063 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGATTA | 130 | 0.0 | 38.076557 | 31 |
| GACCGAT | 135 | 0.0 | 36.666313 | 29 |
| CGATTAA | 135 | 0.0 | 36.666313 | 32 |
| CTCGTAT | 130 | 0.0 | 36.345802 | 42 |
| CGTATGC | 135 | 0.0 | 34.99966 | 44 |
| AGACCGA | 145 | 0.0 | 34.137604 | 28 |
| GAGACCG | 155 | 0.0 | 33.386776 | 27 |
| ACCGATT | 150 | 0.0 | 32.999683 | 30 |
| TCTCGTA | 145 | 0.0 | 32.585896 | 41 |
| TCGTATG | 150 | 0.0 | 31.499699 | 43 |
| GCGGTTC | 175 | 0.0 | 28.285442 | 8 |
| AGCGGTT | 175 | 0.0 | 28.285442 | 7 |
| CCGAGAC | 175 | 0.0 | 28.285442 | 25 |
| AAGAGCG | 180 | 0.0 | 27.501436 | 4 |
| AGAGCGG | 180 | 0.0 | 27.501436 | 5 |
| ATCTCGT | 175 | 0.0 | 26.99974 | 40 |
| GAGCGGT | 185 | 0.0 | 26.7565 | 6 |
| CGGAAGA | 190 | 0.0 | 26.055603 | 1 |
| CGGTTCA | 190 | 0.0 | 26.052382 | 9 |
| AATGCCG | 195 | 0.0 | 25.38437 | 21 |