Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378855.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 761838 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3556 | 0.4667659003620192 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTCAATCTCGTATGCCGTC | 2879 | 0.3779018636508024 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTCAATCTCGTATGCC | 2800 | 0.36753220500946393 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 345 | 0.0 | 38.473995 | 43 |
| TGCCGTC | 365 | 0.0 | 36.9822 | 45 |
| ATGCCGT | 360 | 0.0 | 36.87091 | 44 |
| GATCGGA | 525 | 0.0 | 35.56515 | 26 |
| ATCGGAA | 545 | 0.0 | 34.260006 | 27 |
| AGATCGG | 560 | 0.0 | 34.148 | 25 |
| TCGGAAG | 595 | 0.0 | 32.139294 | 28 |
| CCGAGAT | 650 | 0.0 | 29.76593 | 22 |
| CGAGATC | 690 | 0.0 | 28.04037 | 23 |
| GAGATCG | 710 | 0.0 | 27.2505 | 24 |
| AATGCCG | 1235 | 0.0 | 26.776651 | 18 |
| TGCCGAG | 1275 | 0.0 | 26.114752 | 20 |
| ATGCCGA | 1280 | 0.0 | 25.83698 | 19 |
| GCCGAGA | 1330 | 0.0 | 24.865664 | 21 |
| GAATGCC | 1365 | 0.0 | 24.226492 | 17 |
| GGAATGC | 1400 | 0.0 | 23.781517 | 16 |
| AGGAATG | 1535 | 0.0 | 21.543428 | 15 |
| AGACCGT | 675 | 0.0 | 21.330969 | 28 |
| CGGAAGA | 915 | 0.0 | 20.89932 | 29 |
| CGTGTTC | 685 | 0.0 | 20.691135 | 32 |