Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378931.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1517602 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCCAATATCTCGTATGCC | 8863 | 0.5840134633454621 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 5730 | 0.3775693495396026 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATCTCG | 1220 | 0.0 | 36.331303 | 39 |
| CGGCCAA | 1245 | 0.0 | 36.143913 | 32 |
| CTCGTAT | 1240 | 0.0 | 35.74649 | 42 |
| TCTCGTA | 1240 | 0.0 | 35.745316 | 41 |
| ATCTCGT | 1245 | 0.0 | 35.601757 | 40 |
| GACCGGC | 1270 | 0.0 | 35.25526 | 29 |
| GAGACCG | 1265 | 0.0 | 35.216747 | 27 |
| TCGTATG | 1265 | 0.0 | 35.04004 | 43 |
| CGTATGC | 1275 | 0.0 | 34.94169 | 44 |
| AGACCGG | 1295 | 0.0 | 34.748398 | 28 |
| CCGGCCA | 1305 | 0.0 | 34.48213 | 31 |
| ACCGGCC | 1310 | 0.0 | 34.350517 | 30 |
| GTATGCC | 1320 | 0.0 | 33.239124 | 45 |
| AGATCGG | 825 | 0.0 | 31.09034 | 17 |
| GGCCAAT | 1470 | 0.0 | 30.611685 | 33 |
| GCCAATA | 1485 | 0.0 | 30.453987 | 34 |
| CGAGACC | 1540 | 0.0 | 29.366346 | 26 |
| CAATATC | 1540 | 0.0 | 29.366346 | 36 |
| GATCGGA | 875 | 0.0 | 29.313751 | 18 |
| ATCGGAA | 900 | 0.0 | 28.499477 | 19 |