FastQCFastQC Report
Mon 6 Jun 2016
ERR1378969.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378969.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1118326
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT61600.5508232840871088Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTATCAATCTCGTATGCCGTC29230.2613728018484771Illumina Paired End PCR Primer 2 (96% over 32bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTATCAATCTCGTATGCC13390.11973252879750627Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA8800.036.5594527
TATGCCG3800.036.12509543
GATCGGA8950.035.9467226
AGATCGG8900.035.89587825
TCGGAAG9450.034.75900728
ATGCCGT4150.033.6206744
TGCCGTC4200.032.68461245
CCGAGAT9800.032.59932322
AATGCCG14550.031.69838718
TGCCGAG14750.031.42110620
ATGCCGA14800.031.1629419
CGAGATC10550.030.49508723
CGGAAGA11150.029.66120329
GCCGAGA15450.029.26940321
GAGATCG10950.029.17564624
GAATGCC16700.027.88689417
GGAATGC17100.027.49770416
CTCGTAT5050.027.17716439
ACCGCTA5150.026.64826227
CGCTATC5150.026.64826229