FastQCFastQC Report
Mon 6 Jun 2016
ERR1378859.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378859.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences829071
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT31030.37427433838597657Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTGTATCTCGTATGCCGTC23460.2829673212547538Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTGTATCTCGTATGCC23210.27995189796772535Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2850.037.89067543
GATCGGA3850.032.1394126
ATCGGAA3850.032.1394127
TCGGAAG4050.031.66327328
ATGCCGT3500.030.85383444
AGATCGG4150.029.2739725
TGCCGTC3850.028.63329345
AATGCCG8950.027.1462918
ATGCCGA9200.026.16567219
TGCCGAG9250.026.02423720
CGTATGC4550.023.73371941
CTCGTAT4700.023.45493339
CCGAGAT5300.023.34655222
TCTCGTA4750.023.20803838
GAATGCC10500.023.1389817
ATCTCGT4900.022.50030137
GCCGAGA10400.022.49758721
AGACCGT4950.022.2703425
TCGTATG4850.022.26565440
GTATGCC4900.022.03845242