FastQCFastQC Report
Mon 6 Jun 2016
ERR1379230.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379230.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences794233
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGGT301.1399423E-437.4981129
TCTCGTA301.1399423E-437.4981141
ACCGGTA352.820431E-432.1412430
CGTATGC352.820431E-432.1412444
AGAGCGG406.157191E-428.1306675
CTCGTAT406.166268E-428.12358542
GCGGTTC406.166268E-428.1235858
CGGTAAC406.166268E-428.12358532
CGGTTCA450.001226581324.9987419
GAGCGGT450.001226581324.9987416
AACGATC450.001226581324.99874136
CCGGTAA450.001226581324.99874131
CGGAAGA702.6895674E-522.513041
GTAACGA500.002264661222.49886734
GGTAACG550.00393663120.45351633
CGAGTCC550.00393663120.45351619
AGCGGTT550.00393663120.4535167
AGACCGG550.00393663120.45351628
GGCGACA706.962549E-419.2932454
AAGAGCG600.00649411218.7573224