FastQCFastQC Report
Mon 6 Jun 2016
ERR1379337.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379337.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1001328
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATAGAATCTCGTATGCC13570.13552002940095553Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC1600.042.18871744
ACCGTAT1650.040.9082330
CGTATAG1700.039.70504432
CTCGTAT1750.038.57254442
GACCGTA1750.038.57061429
CCGTATA1750.038.57061431
GACGATA250.002107197435.9992418
TCTCGTA1900.035.5255741
TCGTATG2050.032.9277843
GCGGTTC2200.030.6811718
AGACCGT2200.030.68117128
CGGAAGA2300.030.3315051
AGCGGTT2450.030.3054837
AGAGCGG2250.030.0023635
GAGCGGT2350.029.6817076
ATCTCGT2350.029.68022740
CCGAGAC2350.029.68022725
CGGTTCA2500.028.7993939
ATGCCGA2350.028.72280122
AATGCCG2400.028.12440721