Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378770.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 998785 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTAATAATCTCGTATGCC | 1227 | 0.12284926185315158 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTAATAATCTCGTATGCCGTC | 1195 | 0.11964536912348503 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 130 | 0.0 | 34.613884 | 43 |
| TGCCGTC | 145 | 0.0 | 31.033136 | 45 |
| ATGCCGT | 155 | 0.0 | 29.030998 | 44 |
| CTCGTAT | 245 | 0.0 | 22.039862 | 42 |
| TCTCGTA | 260 | 0.0 | 21.633677 | 41 |
| ACCGGTA | 255 | 0.0 | 21.175552 | 30 |
| TCGTATG | 260 | 0.0 | 20.76833 | 43 |
| CGGAAGA | 250 | 0.0 | 20.706358 | 1 |
| CCGACCA | 55 | 0.003937171 | 20.45366 | 36 |
| CGTATGC | 265 | 0.0 | 20.376474 | 44 |
| GACCGGT | 275 | 0.0 | 19.635511 | 29 |
| GATCGGA | 115 | 1.5955447E-7 | 19.56437 | 26 |
| ATCTCGT | 280 | 0.0 | 19.284876 | 40 |
| CCGGTAA | 280 | 0.0 | 19.284876 | 31 |
| CGGTAAT | 295 | 0.0 | 19.066969 | 32 |
| AGACCGG | 285 | 0.0 | 18.946547 | 28 |
| CAGGTCG | 60 | 0.0065002595 | 18.75482 | 3 |
| CCGAGAC | 290 | 0.0 | 18.61988 | 25 |
| CCACGCC | 175 | 1.382432E-10 | 17.99922 | 10 |
| GAGACCG | 300 | 0.0 | 17.999218 | 27 |