FastQCFastQC Report
Mon 6 Jun 2016
ERR1390784.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390784.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences765852
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA551.1298289E-732.7175419
ATAGACG300.005152044429.99303236
GATCGGA602.4235123E-729.99107618
AGATCGG751.7008115E-623.9928617
CCCGCCA1003.5743142E-822.5389273
ACCGGAT602.470345E-422.49477430
GACCGGA602.470345E-422.49477429
TCGGAAG802.9802904E-622.49330920
CGTATGC702.7090528E-522.4918444
CTCGTAT754.608295E-520.99512542
TCTCGTA754.608295E-520.99512541
CTTCGTT1109.786163E-820.4912762
GCGTGCC550.003894670620.4912762
CAACCCG550.00393916120.45113410
CCGCCAC1302.714296E-819.07144
CCTTCGT1202.447341E-718.7836691
CGTGCCA750.001096963218.0311413
TCGTATG901.8698307E-417.49365443
CCGAGAC1305.798356E-717.30141645
AACGAAA1053.1146876E-517.1399968