FastQCFastQC Report
Mon 6 Jun 2016
ERR1379246.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379246.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences655648
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT401.5581918E-533.75428842
ATCGGAA300.00514630329.99923722
AGACCGA507.155024E-526.99931528
CGTATGC551.3661473E-424.54857644
TCTCGTA551.3661473E-424.54857641
GAGCGGT551.3675628E-424.5448326
TCGTATG602.463819E-422.50286143
AGAGCGG602.4650915E-422.5011465
ACCGAGT602.4663645E-422.49942830
GAGACCG602.4663645E-422.49942827
TATCTCG602.4663645E-422.49942839
AAGAGCG654.2341006E-420.7702884
ATCTCGT654.236281E-420.76870340
GACCGAG654.236281E-420.76870329
AGCGGTT654.236281E-420.7687037
CCGAGAC807.55815E-519.68725
GTATGCC1051.4418765E-619.28816645
GCGGTTC706.9802825E-419.2852258
CGGTTCA706.9802825E-419.2852259
ATGCCGA706.9802825E-419.28522522