FastQCFastQC Report
Mon 6 Jun 2016
ERR1378691.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378691.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1144364
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGTTG1650.038.17903530
GACCGTT1700.037.05612629
AGCGGTT1850.036.483837
CGGTTCA1800.034.9974489
CTCGTAT1700.034.4092642
TCTCGTA1700.034.4092641
TCGTATG1750.033.42613643
CCGAGAC1900.033.15548325
CGTATGC1800.032.4976344
GAGCGGT1950.032.3208776
GCGGTTC1950.032.305348
AGACCGT1950.032.3053428
CCGTTGC1950.032.3053431
ATCTCGT1900.031.97135740
AAGAGCG2050.031.8422554
CGTTGCT2100.029.99781632
GAGACCG2100.029.99781627
CGGAAGA2050.029.6527181
AATGCCG2250.028.99788921
AGAGCGG2200.028.6480465