FastQCFastQC Report
Mon 6 Jun 2016
ERR1379278.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379278.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484774
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGAAA403.453133E-739.3743734
CCGACCG403.453133E-739.3743731
CGTATGC458.6872205E-734.9994444
CTCGTAT458.6872205E-734.9994442
GACCGAA458.6872205E-734.9994433
CGACCGA458.6872205E-734.9994432
TCGTATG458.6872205E-734.9994443
GACCGAC501.9787421E-631.49949329
GAGCGGT501.9787421E-631.4994936
TCTCGTA501.9787421E-631.49949341
AGACCGA501.9787421E-631.49949328
GCGGTTC602.4144356E-729.999528
AGCGGTT602.4144356E-729.999527
ACCGACC554.1589283E-628.63590430
CCGAAAT608.179801E-626.24957835
AGAGCGG608.179801E-626.2495785
AATGCCG651.5215794E-524.23038121
CCGAGAC651.5215794E-524.23038125
CGGTTCA754.596152E-520.9996629
TGCCGAG754.596152E-520.99966223