Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390731.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 680451 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1458 | 0.21426965350921667 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGGCATATCTCGTATGCC | 783 | 0.11507073984754229 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AACGGGT | 40 | 1.5627236E-5 | 33.740246 | 12 |
| CGTATGC | 125 | 0.0 | 32.390636 | 44 |
| CACGCTC | 30 | 0.005153077 | 29.991331 | 11 |
| ATCTCGT | 135 | 0.0 | 29.99133 | 40 |
| CTCGTAT | 135 | 0.0 | 29.99133 | 42 |
| TATCTCG | 145 | 0.0 | 29.474236 | 39 |
| TCTCGTA | 155 | 0.0 | 26.12148 | 41 |
| AGATCGG | 245 | 0.0 | 24.788752 | 17 |
| GAGATCG | 245 | 0.0 | 24.788752 | 16 |
| GATCGGA | 255 | 0.0 | 23.816643 | 18 |
| CGAGGCA | 170 | 0.0 | 23.816643 | 32 |
| TCGTATG | 170 | 0.0 | 23.816643 | 43 |
| ATCGGAA | 255 | 0.0 | 23.816643 | 19 |
| GACCGAG | 175 | 0.0 | 23.13617 | 29 |
| AGACCGA | 175 | 0.0 | 23.13617 | 28 |
| ACCGAGG | 180 | 0.0 | 22.493498 | 30 |
| GTATGCC | 180 | 0.0 | 22.493498 | 45 |
| CCGAGGC | 180 | 0.0 | 22.493498 | 31 |
| CTTCGTA | 80 | 2.9792627E-6 | 22.493496 | 7 |
| CGAGATC | 285 | 0.0 | 22.098875 | 15 |