Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379398.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1558689 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAAGATATCTCGTATGCC | 1809 | 0.11605907272072877 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGTA | 260 | 0.0 | 39.806812 | 29 |
| CTCGTAT | 255 | 0.0 | 39.705006 | 42 |
| TCTCGTA | 260 | 0.0 | 38.941444 | 41 |
| CGTATGC | 275 | 0.0 | 36.817368 | 44 |
| CCGTAAG | 290 | 0.0 | 36.46471 | 31 |
| ACCGTAA | 290 | 0.0 | 35.688866 | 30 |
| TATCTCG | 290 | 0.0 | 34.91302 | 39 |
| AGACCGT | 300 | 0.0 | 34.499237 | 28 |
| GAGACCG | 320 | 0.0 | 32.343037 | 27 |
| CGTAAGA | 335 | 0.0 | 32.23809 | 32 |
| TCGTATG | 315 | 0.0 | 32.142147 | 43 |
| GAGCGGT | 335 | 0.0 | 30.897812 | 6 |
| GCGGTTC | 340 | 0.0 | 30.440506 | 8 |
| AGCGGTT | 340 | 0.0 | 30.440506 | 7 |
| AGAGCGG | 350 | 0.0 | 30.217495 | 5 |
| CCGAGAC | 350 | 0.0 | 29.570776 | 25 |
| AATGCCG | 375 | 0.0 | 29.39935 | 21 |
| ATCTCGT | 345 | 0.0 | 29.34718 | 40 |
| CGGTTCA | 355 | 0.0 | 29.154285 | 9 |
| GTATGCC | 365 | 0.0 | 28.355537 | 45 |