Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378911.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 806891 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCTGGATCTCGTATGCC | 8311 | 1.0300028132672194 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 4518 | 0.5599269294117794 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 916 | 0.11352214859256082 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 1015 | 0.0 | 38.126926 | 41 |
| CCGTGCT | 1070 | 0.0 | 37.428772 | 31 |
| CGTGCTG | 1070 | 0.0 | 37.2185 | 32 |
| CTCGTAT | 1050 | 0.0 | 37.070305 | 42 |
| ATCTCGT | 1050 | 0.0 | 36.856026 | 40 |
| CGTATGC | 1075 | 0.0 | 36.626797 | 44 |
| TCGTATG | 1065 | 0.0 | 36.54819 | 43 |
| GAGACCG | 1110 | 0.0 | 36.28268 | 27 |
| AGACCGT | 1110 | 0.0 | 36.28268 | 28 |
| GACCGTG | 1110 | 0.0 | 36.079987 | 29 |
| GTATGCC | 1105 | 0.0 | 35.42879 | 45 |
| TGGATCT | 1145 | 0.0 | 34.387604 | 37 |
| ACCGTGC | 1165 | 0.0 | 34.37664 | 30 |
| GGATCTC | 1145 | 0.0 | 33.798103 | 38 |
| AGATCGG | 620 | 0.0 | 33.74898 | 17 |
| GATCTCG | 1150 | 0.0 | 33.651154 | 39 |
| GCTGGAT | 1175 | 0.0 | 33.31814 | 35 |
| CGAGACC | 1250 | 0.0 | 32.399017 | 26 |
| CTGGATC | 1220 | 0.0 | 32.273613 | 36 |
| TCGGAAG | 650 | 0.0 | 32.191334 | 20 |