Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378786.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 817773 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTACTATCTCGTATGCCGTC | 1285 | 0.15713407021263848 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTACTATCTCGTATGCC | 945 | 0.11555774035092868 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 160 | 0.0 | 37.965298 | 43 |
| TGCCGTC | 165 | 0.0 | 36.81483 | 45 |
| ATGCCGT | 195 | 0.0 | 31.151012 | 44 |
| GACCGGT | 265 | 0.0 | 22.923841 | 26 |
| AGACCGG | 290 | 0.0 | 21.723488 | 25 |
| ACCGGTT | 280 | 0.0 | 21.69578 | 27 |
| CCGGTTA | 280 | 0.0 | 21.69578 | 28 |
| CGTATGC | 280 | 0.0 | 21.694454 | 41 |
| CGGTTAC | 285 | 0.0 | 21.315151 | 29 |
| CTCGTAT | 290 | 0.0 | 20.947649 | 39 |
| TCTCGTA | 290 | 0.0 | 20.947649 | 38 |
| TATCTCG | 295 | 0.0 | 20.592604 | 36 |
| CGGAAGA | 275 | 0.0 | 20.463945 | 1 |
| TCGTATG | 305 | 0.0 | 19.91622 | 40 |
| GTATGCC | 320 | 0.0 | 19.685709 | 42 |
| CCGAGAC | 310 | 0.0 | 19.59499 | 22 |
| GAGACCG | 340 | 0.0 | 18.528858 | 24 |
| TGCCGAG | 415 | 0.0 | 18.432056 | 20 |
| ATCTCGT | 330 | 0.0 | 18.40854 | 37 |
| GCGGTTC | 405 | 0.0 | 18.339514 | 5 |