Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378804.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1186089 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTATTATCTCGTATGCCGTC | 1549 | 0.13059728232872914 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 210 | 0.0 | 34.28356 | 43 |
| ATGCCGT | 225 | 0.0 | 31.997993 | 44 |
| GCGGTAC | 30 | 0.0051489035 | 29.998117 | 17 |
| CAACCGG | 30 | 0.0051489035 | 29.998117 | 39 |
| CGGTACT | 30 | 0.0051489035 | 29.998117 | 18 |
| TGCCGTC | 265 | 0.0 | 28.866114 | 45 |
| ACGCCCG | 50 | 7.161648E-5 | 26.998304 | 12 |
| CTCGTAT | 270 | 0.0 | 26.664993 | 39 |
| TCTCGTA | 285 | 0.0 | 26.050997 | 38 |
| ACCGCGC | 70 | 9.3096423E-7 | 25.713755 | 9 |
| TCGTATG | 280 | 0.0 | 25.712671 | 40 |
| CGGCTAT | 285 | 0.0 | 25.262638 | 29 |
| CGTATGC | 285 | 0.0 | 25.261572 | 41 |
| GACCGGC | 285 | 0.0 | 25.261572 | 26 |
| TATCTCG | 290 | 0.0 | 24.826029 | 36 |
| ACCGGCT | 300 | 0.0 | 23.998493 | 27 |
| ATGCCGA | 460 | 0.0 | 23.965887 | 19 |
| ATCTCGT | 305 | 0.0 | 23.605076 | 37 |
| AGACCGG | 305 | 0.0 | 23.605076 | 25 |
| AATGCCG | 470 | 0.0 | 23.455975 | 18 |