FastQCFastQC Report
Mon 6 Jun 2016
ERR1378934.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378934.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences810978
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGAAGAATCTCGTATGCC78580.9689535351143927Illumina Paired End PCR Primer 2 (97% over 34bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC40210.4958210950235395Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT8620.1062914160433452Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT10100.035.420542
TCTCGTA10150.035.24601741
CGTATGC10100.035.19773544
GAGACCG10350.034.9997127
TCGTATG10250.034.90215343
CCGAGAA10450.034.88009631
CGAGAAG10550.034.7627532
ATCTCGT10300.034.73272340
AGACCGA10500.034.49971428
AATCTCG10450.034.4494839
GACCGAG10600.034.3865129
ACCGAGA10750.033.90669630
GTATGCC10500.033.42829545
CGAGACC11500.031.4997426
AGATCGG5200.030.2882117
GATCGGA5400.029.16642618
TCGGAAG5550.028.37814520
ATCGGAA5550.028.37814519
GAATCTC12650.028.280438
AAGAATC13400.027.0333636