Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378620.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 493080 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 1776 | 0.36018495984424437 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1268 | 0.25715908169059787 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 195 | 0.0 | 41.535 | 13 |
| CGTCATA | 200 | 0.0 | 40.496624 | 24 |
| GACGTCA | 210 | 0.0 | 38.56821 | 22 |
| TGACGTC | 210 | 0.0 | 38.56821 | 21 |
| ATGACGT | 210 | 0.0 | 38.56821 | 20 |
| CGATGAC | 220 | 0.0 | 37.837753 | 18 |
| AGCCGAT | 215 | 0.0 | 37.671276 | 15 |
| ACGTCAT | 215 | 0.0 | 37.671276 | 23 |
| AGATTCG | 30 | 1.1395356E-4 | 37.496876 | 10 |
| GATTCGG | 30 | 1.1395356E-4 | 37.496876 | 11 |
| CCGATGA | 220 | 0.0 | 36.815113 | 17 |
| GCCGATG | 220 | 0.0 | 36.815113 | 16 |
| TCGGTAT | 130 | 0.0 | 36.343124 | 23 |
| GATGACG | 235 | 0.0 | 35.42258 | 19 |
| TCGGGGA | 135 | 0.0 | 34.99708 | 14 |
| ATAAGCC | 240 | 0.0 | 33.74719 | 12 |
| TATGCCG | 40 | 1.559657E-5 | 33.747185 | 43 |
| AATTCGG | 140 | 0.0 | 33.747185 | 20 |
| TTCGGTA | 140 | 0.0 | 33.747185 | 22 |
| CGGTATT | 140 | 0.0 | 33.747185 | 24 |