FastQCFastQC Report
Mon 6 Jun 2016
ERR1378922.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378922.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504532
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGGACATCTCGTATGCC77901.5440051374342956Illumina Paired End PCR Primer 2 (97% over 34bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC40080.7943995623667082Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT8880.1760046934584922Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA9400.036.38506341
CTCGTAT9500.036.00206442
GCGTTCT250.002105398336.002061
GTATGCC9450.035.9508845
CCGAAGG9400.035.90275231
CGTATGC9650.035.4389344
TCGTATG9650.035.4389343
CGAAGGA9600.035.38914532
ATCTCGT9700.035.2597540
CATCTCG9750.035.07893439
GAGACCG9850.034.4909427
GACCGAA9950.034.14430229
AGACCGA9950.034.14430228
ACCGAAG9950.033.9181830
GGACATC10500.032.7875936
GAAGGAC10600.032.47505633
CGAGACC10750.032.0219226
ACATCTC10700.031.96444738
AGATCGG5500.031.9109217
GACATCT11150.030.87620737