Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378870.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 738009 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3247 | 0.4399675342712623 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACCTAATCTCGTATGCCGTC | 2103 | 0.28495587452185545 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACCTAATCTCGTATGCC | 1651 | 0.22371000895653032 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 265 | 0.0 | 37.359276 | 43 |
| GATCGGA | 455 | 0.0 | 34.11235 | 26 |
| ATGCCGT | 305 | 0.0 | 33.197422 | 44 |
| ATCGGAA | 470 | 0.0 | 33.023655 | 27 |
| TCGGAAG | 505 | 0.0 | 32.966522 | 28 |
| TGCCGTC | 305 | 0.0 | 32.4597 | 45 |
| AGATCGG | 505 | 0.0 | 30.73489 | 25 |
| TTACGCC | 30 | 0.005152371 | 29.992504 | 23 |
| AATGCCG | 945 | 0.0 | 28.326254 | 18 |
| ATGCCGA | 955 | 0.0 | 27.7941 | 19 |
| CCGAGAT | 560 | 0.0 | 27.716284 | 22 |
| TGCCGAG | 975 | 0.0 | 27.223965 | 20 |
| GAGATCG | 580 | 0.0 | 26.760553 | 24 |
| CGAGATC | 595 | 0.0 | 26.085915 | 23 |
| GAATGCC | 1025 | 0.0 | 25.895966 | 17 |
| ACCGTAC | 410 | 0.0 | 24.68895 | 27 |
| CGTACCT | 415 | 0.0 | 24.394796 | 29 |
| GCCGAGA | 1055 | 0.0 | 24.306719 | 21 |
| CCGTACC | 420 | 0.0 | 24.104383 | 28 |
| CGGAAGA | 695 | 0.0 | 23.954092 | 29 |