Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378908.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 835335 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAATTATCTCGTATGCC | 9983 | 1.1950893952725554 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 5439 | 0.6511160193215896 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1307 | 0.15646417305631874 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATCTCG | 1200 | 0.0 | 38.0622 | 39 |
| CGATAAT | 1225 | 0.0 | 37.836433 | 32 |
| ATCTCGT | 1215 | 0.0 | 37.592293 | 40 |
| CCGATAA | 1235 | 0.0 | 37.530064 | 31 |
| CGTATGC | 1230 | 0.0 | 37.499702 | 44 |
| TCTCGTA | 1220 | 0.0 | 37.438225 | 41 |
| CTCGTAT | 1230 | 0.0 | 37.316776 | 42 |
| TCGTATG | 1230 | 0.0 | 37.316776 | 43 |
| ACCGATA | 1245 | 0.0 | 37.22862 | 30 |
| GACCGAT | 1245 | 0.0 | 37.047897 | 29 |
| GAGACCG | 1265 | 0.0 | 36.817886 | 27 |
| AGACCGA | 1260 | 0.0 | 36.78542 | 28 |
| GTATGCC | 1245 | 0.0 | 36.686455 | 45 |
| CGAGACC | 1420 | 0.0 | 32.95748 | 26 |
| CGAGATC | 845 | 0.0 | 31.419868 | 15 |
| GATAATT | 1515 | 0.0 | 31.18787 | 33 |
| AGATCGG | 845 | 0.0 | 30.88733 | 17 |
| CCGAGAT | 860 | 0.0 | 30.871847 | 14 |
| ATCGGAA | 860 | 0.0 | 30.348595 | 19 |
| GATCGGA | 870 | 0.0 | 29.99976 | 18 |