Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379355.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1035447 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACTCATCTCGTATGCC | 1228 | 0.11859612322021311 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGATAC | 130 | 0.0 | 39.80701 | 31 |
| GACCGAT | 140 | 0.0 | 35.356537 | 29 |
| CGATACT | 150 | 0.0 | 34.499405 | 32 |
| ACCGATA | 145 | 0.0 | 34.137344 | 30 |
| TCGTATG | 160 | 0.0 | 32.344757 | 43 |
| AGCGGTT | 160 | 0.0 | 32.343193 | 7 |
| CGTATGC | 170 | 0.0 | 30.442122 | 44 |
| GCGGTTC | 175 | 0.0 | 29.570923 | 8 |
| CTCGTAT | 180 | 0.0 | 28.750895 | 42 |
| TCTCGTA | 180 | 0.0 | 28.749506 | 41 |
| CGGTTCA | 190 | 0.0 | 27.236372 | 9 |
| GAGACCG | 190 | 0.0 | 27.236372 | 27 |
| AATGCCG | 185 | 0.0 | 26.756296 | 21 |
| AAGAGCG | 195 | 0.0 | 26.54057 | 4 |
| GAGCGGT | 195 | 0.0 | 26.54057 | 6 |
| AGAGCGG | 195 | 0.0 | 26.54057 | 5 |
| CGGAAGA | 200 | 0.0 | 25.877054 | 1 |
| AGACCGA | 195 | 0.0 | 25.38418 | 28 |
| ATGCCGA | 205 | 0.0 | 25.243467 | 22 |
| ATCTCGT | 220 | 0.0 | 23.522324 | 40 |