FastQCFastQC Report
Mon 6 Jun 2016
ERR1379219.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379219.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395972
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGGACATATCTCGTATGCC15920.40204862970108995Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGGGA1950.041.53729630
GACCGGG1900.041.44620529
CCGGGAC1850.041.3501931
CGGGACA1850.041.3501932
TCTCGTA2000.040.49886341
CGTATGC2050.039.51108644
CTCGTAT2050.039.51108642
GCGGTTC2050.039.5110868
TCGTATG2050.039.51108643
AGACCGG2000.039.37389828
TATCTCG2100.038.57034339
AAGAGCG2250.038.0085334
AGCGGTT2200.037.839857
GAGCGGT2200.037.839856
CGGAAGA2200.036.826451
ATCTCGT2200.036.8171540
CGGTTCA2200.036.817159
AGAGCGG2300.036.203785
AATGCCG2250.035.9989921
GAGACCG2200.035.79445327