Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378861.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 955335 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2840 | 0.29727791821716987 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCACATTATCTCGTATGCC | 2018 | 0.2112348024514961 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCACATTATCTCGTATGCCGTC | 1908 | 0.19972051688674652 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 235 | 0.0 | 38.297073 | 43 |
| ATCGGAA | 465 | 0.0 | 31.44437 | 27 |
| ATGCCGT | 290 | 0.0 | 31.033833 | 44 |
| TCGGAAG | 495 | 0.0 | 30.903591 | 28 |
| GATCGGA | 485 | 0.0 | 30.147694 | 26 |
| TGCCGTC | 315 | 0.0 | 29.999369 | 45 |
| AGATCGG | 510 | 0.0 | 28.672867 | 25 |
| AATGCCG | 920 | 0.0 | 26.651468 | 18 |
| ATGCCGA | 940 | 0.0 | 26.087147 | 19 |
| CCGAGAT | 570 | 0.0 | 25.654673 | 22 |
| TGCCGAG | 965 | 0.0 | 25.178185 | 20 |
| CGAGATC | 595 | 0.0 | 24.576746 | 23 |
| GAGATCG | 605 | 0.0 | 24.170515 | 24 |
| CGGAAGA | 670 | 0.0 | 22.831757 | 29 |
| TATCTCG | 410 | 0.0 | 22.49953 | 36 |
| TCTCGTA | 410 | 0.0 | 22.49482 | 38 |
| GAATGCC | 1090 | 0.0 | 22.494818 | 17 |
| ATCTCGT | 420 | 0.0 | 21.963825 | 37 |
| GCCGAGA | 1080 | 0.0 | 21.87225 | 21 |
| CTCGTAT | 425 | 0.0 | 21.70543 | 39 |