Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378905.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1150022 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGGCTACATCTCGTATGCC | 8453 | 0.7350294168285476 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 5074 | 0.4412089507852894 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 1215 | 0.0 | 35.554317 | 44 |
| CTCGTAT | 1210 | 0.0 | 35.515293 | 42 |
| CGGGCTA | 1235 | 0.0 | 35.3429 | 32 |
| AGATCGG | 830 | 0.0 | 35.23974 | 17 |
| TCTCGTA | 1230 | 0.0 | 34.754887 | 41 |
| TCGTATG | 1245 | 0.0 | 34.697586 | 43 |
| AGACCGG | 1260 | 0.0 | 34.64165 | 28 |
| GACCGGG | 1275 | 0.0 | 34.234104 | 29 |
| ACCGGGC | 1285 | 0.0 | 33.967693 | 30 |
| CATCTCG | 1255 | 0.0 | 33.88328 | 39 |
| ATCTCGT | 1265 | 0.0 | 33.793293 | 40 |
| GTATGCC | 1280 | 0.0 | 33.74883 | 45 |
| GAGACCG | 1305 | 0.0 | 33.61952 | 27 |
| GGGCTAC | 1305 | 0.0 | 33.447113 | 33 |
| GATCGGA | 885 | 0.0 | 33.305374 | 18 |
| CCGGGCT | 1330 | 0.0 | 32.818405 | 31 |
| GCTACAT | 1355 | 0.0 | 31.88081 | 35 |
| ATCGGAA | 920 | 0.0 | 31.793755 | 19 |
| GGCTACA | 1395 | 0.0 | 31.289234 | 34 |
| TCGGAAG | 940 | 0.0 | 31.11729 | 20 |