FastQCFastQC Report
Mon 6 Jun 2016
ERR1378867.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378867.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences920976
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT26120.2836121679609458Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACTTATCTCGTATGCCGTC20000.2171609249318115Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACTTATCTCGTATGCC19880.2158579593822206Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2550.033.528443
GATCGGA3250.033.2261626
AGATCGG3400.032.42197425
ATGCCGT2600.032.01826544
ATCGGAA3400.031.760327
TCGGAAG3650.031.43399428
TGCCGTC2850.029.99909445
AATGCCG7700.026.87938718
ATGCCGA8050.025.99018319
CCGAGAT4600.025.43125522
TGCCGAG8800.023.51946320
GCCGAGA9050.022.37258521
GAATGCC9500.022.26006717
CGAGATC5400.021.24705323
GAGATCG5200.021.1989824
TCTCGTA4100.020.85076538
TATCTCG4250.020.64643736
AGCGGTT10150.020.6263394
GAGCGGT10150.020.6263393
AGAGCGG10100.020.5111372