Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379216.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 367498 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGAAGATCTCGTATGCC | 1048 | 0.28517161998160534 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCGGTTC | 150 | 0.0 | 45.0 | 8 |
| AGCGGTT | 150 | 0.0 | 45.0 | 7 |
| AATGCCG | 145 | 0.0 | 45.0 | 21 |
| GAGCGGT | 165 | 0.0 | 42.272728 | 6 |
| TCTCGTA | 155 | 0.0 | 42.096775 | 41 |
| TGCCGAG | 155 | 0.0 | 42.096775 | 23 |
| AGAGCGG | 165 | 0.0 | 40.90909 | 5 |
| CTCGTAT | 160 | 0.0 | 40.78125 | 42 |
| CCGAGAC | 160 | 0.0 | 40.78125 | 25 |
| CGGAAGA | 170 | 0.0 | 39.705883 | 1 |
| CGTATGC | 165 | 0.0 | 39.545452 | 44 |
| GACCGCT | 165 | 0.0 | 39.545452 | 29 |
| ATGCCGA | 165 | 0.0 | 39.545452 | 22 |
| AAGAGCG | 175 | 0.0 | 38.571426 | 4 |
| CGGTTCA | 175 | 0.0 | 38.571426 | 9 |
| AGACCGC | 175 | 0.0 | 38.571426 | 28 |
| ATCTCGT | 170 | 0.0 | 38.38235 | 40 |
| ACCGCTG | 170 | 0.0 | 38.38235 | 30 |
| CGCTGAA | 170 | 0.0 | 38.38235 | 32 |
| GAGACCG | 170 | 0.0 | 38.38235 | 27 |