FastQCFastQC Report
Mon 6 Jun 2016
ERR1379112.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379112.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1161489
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTAGATCTCGTATGCCGTC26980.23228803716608595Illumina Paired End PCR Primer 2 (96% over 32bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTAGATCTCGTATGCC24880.21420779706049736Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4700.036.37796843
ATGCCGT4850.035.7167344
TGCCGTC5550.031.21191445
CTCGTAT6750.024.99655539
TCTCGTA6900.024.45104638
CGTATGC6850.024.3032241
CGGTGTA7000.024.1038229
ACCGGTG7000.024.10174627
GACCGGT7050.023.61173226
TCGTATG7250.023.58295640
CCGGTGT7200.023.4332628
GAGACCG7700.021.91067724
ATCTCGT7750.021.77213337
GTATGCC7650.021.76170742
AATGCCG9750.021.68651818
GAGCGGT9950.021.2780883
CGGAAGA5750.021.1657961
GTAGATC8000.021.09265933
CGGTTCA10150.021.0789016
GCGGTTC10300.020.7719255