Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379095.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1265406 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTATCTATCTCGTATGCC | 3582 | 0.28307120402463715 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTATCTATCTCGTATGCCGTC | 3264 | 0.2579409296304901 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 365 | 0.0 | 35.75104 | 43 |
| TGCCGTC | 435 | 0.0 | 31.032412 | 45 |
| ATGCCGT | 475 | 0.0 | 28.419155 | 44 |
| CGGAAGA | 770 | 0.0 | 26.629128 | 1 |
| ACCGGTA | 760 | 0.0 | 26.047806 | 30 |
| CTCGTAT | 770 | 0.0 | 25.71257 | 42 |
| CCGGTAT | 780 | 0.0 | 25.38593 | 31 |
| CGGTATC | 795 | 0.0 | 25.189985 | 32 |
| CGTATGC | 800 | 0.0 | 25.029577 | 44 |
| TCTCGTA | 805 | 0.0 | 24.594631 | 41 |
| TCGTATG | 810 | 0.0 | 24.442812 | 43 |
| GACCGGT | 815 | 0.0 | 24.289978 | 29 |
| TATCTCG | 860 | 0.0 | 23.021719 | 39 |
| AGACCGG | 875 | 0.0 | 22.88057 | 28 |
| GTATGCC | 885 | 0.0 | 22.87983 | 45 |
| CCGAGAC | 870 | 0.0 | 22.753504 | 25 |
| CGGCTAG | 50 | 0.0022682168 | 22.494053 | 17 |
| ATCTCGT | 905 | 0.0 | 21.876993 | 40 |
| GAGACCG | 905 | 0.0 | 21.872671 | 27 |
| ATCTATC | 975 | 0.0 | 20.537903 | 36 |