Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378800.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 906534 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCATTATCTCGTATGCCGTC | 1113 | 0.12277531785901026 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCATTATCTCGTATGCC | 1038 | 0.11450204846150283 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 150 | 0.0 | 41.99583 | 43 |
| TGCCGTC | 185 | 0.0 | 31.618483 | 45 |
| ATGCCGT | 195 | 0.0 | 29.997023 | 44 |
| CTCGTAT | 265 | 0.0 | 22.073278 | 39 |
| TCGTATG | 270 | 0.0 | 21.664516 | 40 |
| ATGCCGA | 400 | 0.0 | 21.372877 | 19 |
| CGTATGC | 275 | 0.0 | 21.270615 | 41 |
| TATCTCG | 290 | 0.0 | 20.946196 | 36 |
| TCTCGTA | 280 | 0.0 | 20.890783 | 38 |
| CGTGCAT | 285 | 0.0 | 20.524277 | 29 |
| GACCGTG | 290 | 0.0 | 20.170412 | 26 |
| CCGTGCA | 290 | 0.0 | 20.170412 | 28 |
| GCGGTTC | 425 | 0.0 | 20.127863 | 5 |
| GATCGGA | 125 | 1.7680577E-8 | 19.798035 | 26 |
| AATGCCG | 435 | 0.0 | 19.653221 | 18 |
| ATCTCGT | 300 | 0.0 | 19.498064 | 37 |
| AGACCGT | 300 | 0.0 | 19.498064 | 25 |
| CCGAGAC | 300 | 0.0 | 19.498064 | 22 |
| AGCGGTT | 455 | 0.0 | 19.295507 | 4 |
| GAGCGGT | 445 | 0.0 | 19.226423 | 3 |