Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378639.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 695108 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2277 | 0.32757499554026137 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1618 | 0.23276958400708955 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 200 | 0.0 | 41.620605 | 13 |
| GCGGTCT | 240 | 0.0 | 40.30825 | 36 |
| GATGACG | 205 | 0.0 | 39.508026 | 19 |
| TTCGGTA | 245 | 0.0 | 39.48563 | 22 |
| TCGGTAT | 245 | 0.0 | 39.48563 | 23 |
| CGGGGAA | 250 | 0.0 | 38.695915 | 15 |
| CGTCATA | 210 | 0.0 | 38.56736 | 24 |
| AATTCGG | 255 | 0.0 | 37.937176 | 20 |
| ATGACGT | 215 | 0.0 | 37.670444 | 20 |
| CGGTATT | 260 | 0.0 | 37.207615 | 24 |
| AGCCGAT | 225 | 0.0 | 36.996098 | 15 |
| TCGGGGA | 265 | 0.0 | 36.50558 | 14 |
| GAATTCG | 265 | 0.0 | 36.50558 | 19 |
| AAGCCGA | 230 | 0.0 | 36.191833 | 14 |
| CTCGGGG | 230 | 0.0 | 36.191833 | 13 |
| TTCCTCG | 235 | 0.0 | 35.421795 | 10 |
| CGATGAC | 230 | 0.0 | 35.213676 | 18 |
| GGCGGTC | 270 | 0.0 | 34.996307 | 35 |
| CCTCGGG | 245 | 0.0 | 34.894276 | 12 |
| ATTCGGT | 280 | 0.0 | 34.549927 | 21 |