Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379015.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 850299 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4337 | 0.510055874462983 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGTGATCTCGTATGCCGTC | 2446 | 0.28766351601025053 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGTGATCTCGTATGCC | 1504 | 0.17687895669640916 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 275 | 0.0 | 36.00259 | 43 |
| GATCGGA | 470 | 0.0 | 33.030403 | 26 |
| ATCGGAA | 465 | 0.0 | 32.41787 | 27 |
| ATGCCGT | 305 | 0.0 | 31.72359 | 44 |
| AGATCGG | 540 | 0.0 | 29.58198 | 25 |
| TCGGAAG | 510 | 0.0 | 29.557472 | 28 |
| TGCCGTC | 335 | 0.0 | 28.882675 | 45 |
| CCGAGAT | 580 | 0.0 | 27.541843 | 22 |
| AATGCCG | 960 | 0.0 | 26.483166 | 18 |
| TGCCGAG | 995 | 0.0 | 26.003838 | 20 |
| ATGCCGA | 990 | 0.0 | 25.680643 | 19 |
| GACCGGA | 400 | 0.0 | 25.311342 | 26 |
| GCCGAGA | 1025 | 0.0 | 25.023247 | 21 |
| ACCGGAT | 415 | 0.0 | 24.938618 | 27 |
| GAATGCC | 1040 | 0.0 | 24.87867 | 17 |
| CGAGATC | 650 | 0.0 | 24.575798 | 23 |
| AGACCGG | 415 | 0.0 | 23.85433 | 25 |
| CCGGATG | 425 | 0.0 | 23.82244 | 28 |
| CGGAAGA | 635 | 0.0 | 23.73907 | 29 |
| CTCGTAT | 430 | 0.0 | 23.54682 | 39 |