Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378914.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1280449 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTGTAATCTCGTATGCC | 7964 | 0.621969324822777 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 4282 | 0.3344139438587558 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 930 | 0.0 | 35.324696 | 44 |
| CTCGTAT | 925 | 0.0 | 35.272385 | 42 |
| AGATCGG | 600 | 0.0 | 35.249355 | 17 |
| CCGCTTG | 960 | 0.0 | 35.15561 | 31 |
| ACCGCTT | 955 | 0.0 | 34.868477 | 30 |
| TCTCGTA | 935 | 0.0 | 34.65177 | 41 |
| TCGTATG | 950 | 0.0 | 34.58102 | 43 |
| CGCTTGT | 970 | 0.0 | 34.561226 | 32 |
| ATCTCGT | 940 | 0.0 | 34.467457 | 40 |
| GACCGCT | 970 | 0.0 | 34.329273 | 29 |
| AGACCGC | 975 | 0.0 | 34.153225 | 28 |
| TCGGAAG | 655 | 0.0 | 33.320004 | 20 |
| AATCTCG | 980 | 0.0 | 33.06062 | 39 |
| GTATGCC | 1015 | 0.0 | 32.36647 | 45 |
| GAGACCG | 1035 | 0.0 | 32.17333 | 27 |
| GATCGGA | 665 | 0.0 | 32.142273 | 18 |
| ATCGGAA | 685 | 0.0 | 31.532272 | 19 |
| GTAATCT | 1100 | 0.0 | 30.067635 | 37 |
| GCTTGTA | 1125 | 0.0 | 29.999454 | 33 |
| GAGATCG | 725 | 0.0 | 29.171885 | 16 |