Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379367.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 691319 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACTAGATCTCGTATGCC | 1877 | 0.2715099686251933 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGACTA | 220 | 0.0 | 42.953995 | 32 |
| CTCGTAT | 225 | 0.0 | 42.002495 | 42 |
| TCTCGTA | 225 | 0.0 | 42.002495 | 41 |
| CGTATGC | 225 | 0.0 | 41.99946 | 44 |
| TCGTATG | 230 | 0.0 | 41.086426 | 43 |
| ACCGGAC | 230 | 0.0 | 40.108177 | 30 |
| CCGGACT | 235 | 0.0 | 39.254818 | 31 |
| GACCGGA | 240 | 0.0 | 38.437004 | 29 |
| AGACCGG | 245 | 0.0 | 37.65258 | 28 |
| ATCTCGT | 255 | 0.0 | 37.061028 | 40 |
| CCGAGAC | 255 | 0.0 | 36.176006 | 25 |
| GGACTAG | 265 | 0.0 | 34.810875 | 33 |
| GAGACCG | 265 | 0.0 | 34.810875 | 27 |
| GAGCGGT | 275 | 0.0 | 34.363194 | 6 |
| CGGTTCA | 285 | 0.0 | 33.157467 | 9 |
| GCGGTTC | 290 | 0.0 | 32.58579 | 8 |
| AAGAGCG | 290 | 0.0 | 32.58579 | 4 |
| GTATGCC | 285 | 0.0 | 32.368004 | 45 |
| AGCGGTT | 295 | 0.0 | 32.03349 | 7 |
| ACTAGAT | 305 | 0.0 | 31.720905 | 35 |