FastQCFastQC Report
Mon 6 Jun 2016
ERR1390744.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390744.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences844897
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA950.030.7841718
GTGCGCC406.1220233E-428.1584852
CCGAGAC1200.026.24392545
TCGGAAG1201.6370905E-1124.36935820
AGATCGG1252.910383E-1123.3959717
ATCGGAA1252.910383E-1123.3959719
CGGAAGA1252.910383E-1123.39458521
AGAGCGG1459.094947E-1221.72039625
GCGGTTC1501.4551915E-1120.99638228
CGGTTCA1501.4551915E-1120.9951429
CGAGTAG1008.936131E-720.2765125
CCGAGTA1008.9513924E-720.272914
CGAGATC1800.019.99655515
TCCCGAG1202.4636938E-718.7723242
AGCGGTT1801.0913936E-1118.7467727
GAGCGGT1709.276846E-1118.5262226
CCGAGAT1709.276846E-1118.5262214
GAGATCG1608.1672624E-1018.278116
CGCCACC901.8463691E-417.5229135
AAGAGCG1956.493792E-1016.15106224