FastQCFastQC Report
Mon 6 Jun 2016
ERR1378593.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378593.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences623646
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA25190.40391504154600527No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA19360.3104325210135237No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACGTCA2450.041.32292622
TGACGTC2450.041.32292621
TAAGCCG2450.041.32292613
CGTCATA2500.040.49646824
CTCGTAT451.9274012E-839.9965139
AGCCGAT2550.039.70241515
GATGACG2550.039.70241519
ATGACGT2600.038.93890820
ACGTCAT2600.038.93890823
ATTCGGT2450.038.5680621
CGGTATT2550.037.93786624
TCGGTAT2550.037.93786623
GAATTCG2500.037.796719
GCCGATG2700.037.49672716
AAGCCGA2700.037.49672714
CTCGGGG2300.037.1706713
TTCCTCG2300.037.1706710
TTCGGTA2550.037.05558822
CGTGTAC552.746674E-936.8149729
CCGATGA2800.036.1575617