Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378952.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 989435 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTACCATCTCGTATGCC | 8873 | 0.8967744217659575 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 4279 | 0.4324690353585632 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCTAC | 1110 | 0.0 | 36.68824 | 32 |
| CCGTCTA | 1115 | 0.0 | 36.52372 | 31 |
| GACCGTC | 1105 | 0.0 | 36.44702 | 29 |
| AGACCGT | 1120 | 0.0 | 35.958893 | 28 |
| CTCGTAT | 1060 | 0.0 | 35.873528 | 42 |
| CATCTCG | 1075 | 0.0 | 35.37297 | 39 |
| ACCGTCT | 1145 | 0.0 | 35.370262 | 30 |
| CGTATGC | 1090 | 0.0 | 35.297253 | 44 |
| ATCTCGT | 1080 | 0.0 | 35.2092 | 40 |
| GAGACCG | 1145 | 0.0 | 35.17376 | 27 |
| TCGTATG | 1090 | 0.0 | 35.090836 | 43 |
| TCTCGTA | 1090 | 0.0 | 34.886185 | 41 |
| GTATGCC | 1105 | 0.0 | 34.818104 | 45 |
| GTCTACC | 1195 | 0.0 | 34.078617 | 33 |
| TACCATC | 1190 | 0.0 | 33.089054 | 36 |
| CTACCAT | 1275 | 0.0 | 31.763884 | 35 |
| CGAGACC | 1330 | 0.0 | 30.61951 | 26 |
| ACCATCT | 1305 | 0.0 | 29.828323 | 37 |
| TCTACCA | 1385 | 0.0 | 29.403572 | 34 |
| AGATCGG | 620 | 0.0 | 29.394403 | 17 |