Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378788.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 731363 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAATCTATCTCGTATGCC | 1234 | 0.16872606352796082 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAATCTATCTCGTATGCCGTC | 1180 | 0.161342589111016 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 180 | 0.0 | 39.995625 | 44 |
| TATGCCG | 185 | 0.0 | 38.91466 | 43 |
| TGCCGTC | 190 | 0.0 | 37.89059 | 45 |
| CGGAAGA | 260 | 0.0 | 24.243036 | 1 |
| GACTCCG | 60 | 2.4590213E-4 | 22.50985 | 3 |
| GACGTTC | 50 | 0.0022643676 | 22.499079 | 37 |
| CCGCAAT | 345 | 0.0 | 22.173004 | 28 |
| CTCGTAT | 335 | 0.0 | 22.16327 | 39 |
| TATCTCG | 330 | 0.0 | 21.817286 | 36 |
| TCTCGTA | 345 | 0.0 | 21.520857 | 38 |
| CGCAATC | 345 | 0.0 | 21.520857 | 29 |
| TCGTATG | 335 | 0.0 | 21.491657 | 40 |
| CGTATGC | 335 | 0.0 | 21.490187 | 41 |
| GCGGTTC | 430 | 0.0 | 20.936533 | 5 |
| GACCGCA | 345 | 0.0 | 20.86871 | 26 |
| AGACCGC | 345 | 0.0 | 20.86871 | 25 |
| AGCGCTC | 65 | 4.2295567E-4 | 20.774061 | 7 |
| GAGACCG | 350 | 0.0 | 20.570585 | 24 |
| TGCCGAG | 430 | 0.0 | 20.404745 | 20 |
| ATCTCGT | 355 | 0.0 | 20.280859 | 37 |