FastQCFastQC Report
Mon 6 Jun 2016
ERR1379358.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379358.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences623854
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCC19650.3149775428225194Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC2800.040.17849744
TCGTATG2800.040.17849743
GCGGTTC2750.040.0908368
CTCGTAT2700.039.9999342
AGCGGTT2900.038.7930347
TCTCGTA2900.038.79303441
CGAGACA2900.038.79303432
CGGAAGA3050.038.3636631
GACCGAG3050.038.36058829
CGGTTCA2950.038.1355259
ACCGAGA2950.038.13552530
GAGCGGT2950.038.1355256
GAGACCG3100.037.01606427
AGACCGA3050.036.8851828
AATGCCG3100.036.2902621
ATCTCGT3000.035.99993540
AAGAGCG3150.035.7142224
GTATGCC3350.034.2536745
AGAGCGG3300.034.0908475
ATGCCGA3450.032.6086422