Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379009.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1018046 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4852 | 0.4765992892266165 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTGAATCTCGTATGCCGTC | 2851 | 0.280046284745483 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTGAATCTCGTATGCC | 1357 | 0.1332945662573204 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 380 | 0.0 | 34.9394 | 43 |
| ATCGGAA | 725 | 0.0 | 33.51399 | 27 |
| GATCGGA | 745 | 0.0 | 32.916264 | 26 |
| ATGCCGT | 410 | 0.0 | 32.38286 | 44 |
| AGATCGG | 765 | 0.0 | 32.3498 | 25 |
| TCGGAAG | 765 | 0.0 | 32.05571 | 28 |
| TGCCGTC | 415 | 0.0 | 31.9927 | 45 |
| AATGCCG | 1350 | 0.0 | 28.663883 | 18 |
| GAGATCG | 885 | 0.0 | 27.963385 | 24 |
| ATGCCGA | 1385 | 0.0 | 27.614645 | 19 |
| CGAGATC | 915 | 0.0 | 27.292429 | 23 |
| TGCCGAG | 1410 | 0.0 | 27.284584 | 20 |
| CGGAAGA | 925 | 0.0 | 26.510939 | 29 |
| CCGAGAT | 950 | 0.0 | 26.28692 | 22 |
| CTCGTAT | 515 | 0.0 | 25.777992 | 39 |
| GAATGCC | 1530 | 0.0 | 25.144617 | 17 |
| CCGGTGT | 520 | 0.0 | 25.093718 | 28 |
| GACCGGT | 530 | 0.0 | 24.620249 | 26 |
| ATCTCGT | 540 | 0.0 | 24.584568 | 37 |
| TCGTATG | 540 | 0.0 | 24.584568 | 40 |