Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378836.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1048507 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3349 | 0.3194065466420348 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGAAGATCTCGTATGCCGTC | 2487 | 0.23719441071924172 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGAAGATCTCGTATGCC | 2065 | 0.1969467061259486 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 330 | 0.0 | 36.13763 | 43 |
| TCGGAAG | 415 | 0.0 | 35.235474 | 28 |
| ATCGGAA | 400 | 0.0 | 34.869568 | 27 |
| ATGCCGT | 375 | 0.0 | 32.401134 | 44 |
| AGATCGG | 440 | 0.0 | 31.699606 | 25 |
| TGCCGTC | 380 | 0.0 | 31.382677 | 45 |
| GATCGGA | 445 | 0.0 | 31.34343 | 26 |
| AATGCCG | 965 | 0.0 | 27.275541 | 18 |
| ATGCCGA | 1000 | 0.0 | 26.320902 | 19 |
| TGCCGAG | 1040 | 0.0 | 25.308556 | 20 |
| CCGAGAT | 545 | 0.0 | 24.766785 | 22 |
| CGAGATC | 590 | 0.0 | 23.25909 | 23 |
| GCCGAGA | 1100 | 0.0 | 23.110037 | 21 |
| GAATGCC | 1130 | 0.0 | 23.093748 | 17 |
| TCTCGTA | 530 | 0.0 | 22.920958 | 38 |
| CTCGTAT | 525 | 0.0 | 22.71508 | 39 |
| TCGTATG | 535 | 0.0 | 22.290499 | 40 |
| CGTATGC | 545 | 0.0 | 21.8815 | 41 |
| GAGATCG | 640 | 0.0 | 21.79348 | 24 |
| GACCGAA | 550 | 0.0 | 21.269415 | 26 |