Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379211.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 575282 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAATTCATCTCGTATGCC | 1285 | 0.2233687130833226 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 160 | 0.0 | 42.186928 | 44 |
| GACCGCA | 155 | 0.0 | 42.096207 | 29 |
| ACCGCAA | 165 | 0.0 | 40.908535 | 30 |
| CATCTCG | 165 | 0.0 | 40.908535 | 39 |
| CCGCAAT | 165 | 0.0 | 40.908535 | 31 |
| AGACCGC | 160 | 0.0 | 40.780697 | 28 |
| CTCGTAT | 170 | 0.0 | 39.705345 | 42 |
| CGCAATT | 170 | 0.0 | 39.705345 | 32 |
| CCGAGAC | 165 | 0.0 | 39.544918 | 25 |
| CGGTTCA | 180 | 0.0 | 38.749474 | 9 |
| GTATGCC | 180 | 0.0 | 38.749474 | 45 |
| TCTCGTA | 175 | 0.0 | 38.570908 | 41 |
| TCGTATG | 175 | 0.0 | 38.570908 | 43 |
| GCGGTTC | 185 | 0.0 | 37.70547 | 8 |
| ATCTCGT | 185 | 0.0 | 36.485992 | 40 |
| TGCCGAG | 185 | 0.0 | 36.485992 | 23 |
| GAGACCG | 180 | 0.0 | 36.249508 | 27 |
| AAGAGCG | 195 | 0.0 | 35.771854 | 4 |
| AGCGGTT | 195 | 0.0 | 35.771854 | 7 |
| GAGCGGT | 195 | 0.0 | 35.771854 | 6 |