Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379206.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 394641 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACGTTATCTCGTATGCC | 1766 | 0.4474953185300058 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTTATC | 195 | 0.0 | 44.998604 | 36 |
| CGTACGT | 195 | 0.0 | 44.998604 | 32 |
| CCGTACG | 200 | 0.0 | 43.873642 | 31 |
| GTACGTT | 200 | 0.0 | 43.873642 | 33 |
| CGTATGC | 195 | 0.0 | 43.844795 | 44 |
| TCTCGTA | 205 | 0.0 | 42.803555 | 41 |
| ATGCCGA | 205 | 0.0 | 42.803555 | 22 |
| CTCGTAT | 200 | 0.0 | 42.748676 | 42 |
| GACCGTA | 200 | 0.0 | 42.748676 | 29 |
| TGCCGAG | 200 | 0.0 | 42.748676 | 23 |
| ACGTTAT | 210 | 0.0 | 41.78442 | 35 |
| ACCGTAC | 210 | 0.0 | 41.78442 | 30 |
| TACGTTA | 210 | 0.0 | 41.78442 | 34 |
| CGGAAGA | 205 | 0.0 | 41.721886 | 1 |
| ATCTCGT | 205 | 0.0 | 41.706028 | 40 |
| GCGGTTC | 205 | 0.0 | 41.706028 | 8 |
| CGGTTCA | 205 | 0.0 | 41.706028 | 9 |
| AGACCGT | 205 | 0.0 | 41.706028 | 28 |
| TCGTATG | 205 | 0.0 | 41.706028 | 43 |
| AGAGCGG | 215 | 0.0 | 40.823032 | 5 |