Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378883.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1004536 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2940 | 0.2926724378220392 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACAACATCTCGTATGCC | 2645 | 0.2633056455915965 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGACAACATCTCGTATGCCGTC | 1960 | 0.19511495854802616 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATCGGAA | 515 | 0.0 | 33.19716 | 27 |
| GATCGGA | 525 | 0.0 | 32.564835 | 26 |
| TATGCCG | 265 | 0.0 | 32.260834 | 43 |
| AGATCGG | 525 | 0.0 | 32.13635 | 25 |
| TCGGAAG | 545 | 0.0 | 31.782557 | 28 |
| ATGCCGT | 305 | 0.0 | 28.029903 | 44 |
| CTCGTAT | 575 | 0.0 | 27.779753 | 42 |
| TCTCGTA | 575 | 0.0 | 27.779753 | 41 |
| GAGATCG | 610 | 0.0 | 27.658335 | 24 |
| TGCCGTC | 310 | 0.0 | 27.577806 | 45 |
| ATCTCGT | 605 | 0.0 | 26.774105 | 40 |
| CGTATGC | 605 | 0.0 | 26.402243 | 44 |
| ACCGGAC | 605 | 0.0 | 26.399612 | 30 |
| GACCGGA | 605 | 0.0 | 26.399612 | 29 |
| CGGACAA | 610 | 0.0 | 26.189741 | 32 |
| CGAGATC | 655 | 0.0 | 26.101585 | 23 |
| GTATGCC | 630 | 0.0 | 26.068748 | 45 |
| CCGGACA | 615 | 0.0 | 25.976818 | 31 |
| CCGAGAT | 660 | 0.0 | 25.903845 | 22 |
| AGACCGG | 630 | 0.0 | 25.709084 | 28 |