FastQCFastQC Report
Mon 6 Jun 2016
ERR1379393.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379393.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences673168
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCC15710.23337413543127422Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGAGT2000.042.7491530
CGAGTGT1950.041.5376432
TCTCGTA1950.041.5376441
AGACCGA2100.039.6420728
CGTATGC2050.039.51141444
CTCGTAT2050.039.51141442
GACCGAG2300.036.1949429
AATGCCG2250.035.99928721
TCGTATG2250.035.99928743
GAGACCG2350.035.4248327
ATCTCGT2300.035.21669440
CCGAGAC2250.034.99930625
AGCGGTT2400.034.6868137
ATGCCGA2400.034.68681322
CGGAAGA2350.034.4725231
CCGAGTG2350.034.46740331
GAGCGGT2500.033.3042876
AGAGCGG2500.033.3042875
GCGGTTC2500.033.299348
TGCCGAG2500.032.3993623