FastQCFastQC Report
Mon 6 Jun 2016
ERR1378757.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378757.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences846527
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCCCG550.003936591620.4537412
CGCCCGG807.5622826E-519.68672413
AGCGCTC706.983239E-419.2849547
CCGGCTA952.819101E-416.57829516
CGCCACC1501.4191937E-716.5022755
CGTTGGA1257.61143E-616.2022325
GCGCTCC850.002565089415.8817278
GCGCCAC1004.161057E-415.7521714
CCACGCC1602.9615876E-715.46814110
AAGCGCT1209.7358716E-515.00206856
CGGCTAA900.003753815814.9994117
TCGTTGG1251.3781554E-414.4019854
CACCACG2203.5652192E-914.3176188
ACCTCCG950.005375869614.20996735
CGGGATT950.005375869614.20996714
ACCACGC1656.907052E-613.6358279
AAAGCGC1000.007541978313.5018615
CCTTCGT1200.001651120313.1299121
GCACTCC2309.82709E-812.7168916
CGGAGGT1250.00225133612.599503533