FastQCFastQC Report
Mon 6 Jun 2016
ERR1378832.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378832.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1175960
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACATAATCTCGTATGCC38700.32909282628660835Illumina Paired End PCR Primer 2 (97% over 36bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT32970.28036667913874624Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAACATAATCTCGTATGCCGTC29100.24745739651008536Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3650.040.06629643
TGCCGTC4000.037.68543645
ATGCCGT4050.036.66465844
GATCGGA4200.031.0631226
AGATCGG4550.029.66618225
ATCGGAA4550.028.6736527
TCGGAAG4800.028.58853328
CCGAGAT5750.023.08372922
TCTCGTA8200.023.04751841
CGTATGC8300.023.04090744
CGAACAT8350.022.90196232
CTCGTAT8300.022.76983642
AATGCCG12550.022.76283618
ACCGAAC8500.022.49589530
CCGAACA8550.022.36624531
TCGTATG8550.022.10405343
GACCGAA8550.022.10123329
GTATGCC8700.021.98155245
ATGCCGA13050.021.89349219
ATCTCGT8650.021.84851340