FastQCFastQC Report
Mon 6 Jun 2016
ERR1378876.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378876.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences902391
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT33280.3687980044127213Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGTTATCTCGTATGCCGTC23830.26407621529913305Illumina Paired End PCR Primer 2 (96% over 33bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGTTATCTCGTATGCC20080.2225199497778679Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2900.038.78350443
ATGCCGT2900.038.0078344
TGCCGTC3250.034.60681545
TTTACGC300.005150119329.995932
GATCGGA4650.029.50882526
ATCGGAA4650.029.50882527
TCGGAAG4750.028.41559428
AGATCGG5000.027.44472925
AATGCCG10550.024.51999718
ATGCCGA10900.023.73397319
TGCCGAG11050.023.41179320
CCGAGAT6100.023.2332422
CGTATGC4850.023.19013641
ATCGTTA5100.022.9380431
CGATCGT5150.022.7140829
ACCGATC5150.022.71282227
TCTCGTA5150.022.71282238
CGAGATC6150.022.67856823
GCCGAGA11400.022.4956821
CGTTATC5250.022.2826733