FastQCFastQC Report
Mon 6 Jun 2016
ERR1379354.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379354.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1162727
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG1250.039.5993243
TCTCGTA1350.034.999441
CGTATGC1400.033.7494244
AGACCGT1400.033.7494228
CTCGTAT1500.031.49945842
AGCGGTT1650.029.9994857
GACCGTC1600.029.53074329
GAGCGGT1700.029.1196526
GAGACCG1650.028.63587227
CCGTCAC1600.028.12451631
CCGAGAC1600.028.12451625
GCGGTTC1850.027.9724928
CGGTTCA1900.027.2363729
CGTCACT1750.026.99953732
ATCTCGT1800.026.2495540
AATGCCG1900.026.05218321
ACCGTCA1750.025.71384430
AGAGCGG2000.024.7527685
CGGAAGA1950.024.234521
AAGAGCG2100.023.5740644