FastQCFastQC Report
Mon 6 Jun 2016
ERR1378898.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378898.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1208292
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACTTGATCTCGTATGCC91050.7535430177473658Illumina Paired End PCR Primer 2 (97% over 37bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC54680.45253961790692976Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT12500.035.46081542
CGTATGC12500.035.2793544
ATCTCGT12750.034.76550740
TCTCGTA12700.034.7252141
TCGTATG12700.034.72377443
AGATCGG7850.034.6808917
CCGAACT12850.034.66862531
CGAACTT13000.034.6147532
ACCGAAC13000.034.268630
GATCGGA8150.033.68036318
GACCGAA13350.033.5387129
ATCGGAA8150.033.40429319
AGACCGA13400.033.0777528
GTATGCC13350.032.86456745
CGAGATC8400.032.6779715
TCGGAAG8350.032.6041920
GAGACCG13650.032.47192827
GAGATCG8650.031.4734116
GATCTCG14150.031.0077839
CGAGACC14500.030.10289626