Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378609.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 625497 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3076 | 0.4917689453346699 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2460 | 0.3932872579724603 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 335 | 0.0 | 42.31291 | 13 |
| TCGGTAT | 410 | 0.0 | 40.606007 | 23 |
| AGCCGAT | 350 | 0.0 | 40.499496 | 15 |
| CGTCATA | 350 | 0.0 | 40.499496 | 24 |
| ATGACGT | 350 | 0.0 | 40.496258 | 20 |
| TTCGGTA | 415 | 0.0 | 40.116776 | 22 |
| TGACGTC | 355 | 0.0 | 39.925888 | 21 |
| ACGTCAT | 355 | 0.0 | 39.925888 | 23 |
| ATTCGGT | 420 | 0.0 | 39.639194 | 21 |
| CCGATGA | 360 | 0.0 | 39.37451 | 17 |
| GGCGGTC | 425 | 0.0 | 39.175983 | 35 |
| CGGTATT | 425 | 0.0 | 39.175983 | 24 |
| CGATGAC | 365 | 0.0 | 38.835133 | 18 |
| TCGGGGA | 435 | 0.0 | 38.792618 | 14 |
| CTCGGGG | 385 | 0.0 | 37.98654 | 13 |
| CGGGGAA | 450 | 0.0 | 37.49953 | 15 |
| AGGCGGT | 445 | 0.0 | 37.415268 | 34 |
| GACGTCA | 380 | 0.0 | 37.299187 | 22 |
| GAATTCG | 450 | 0.0 | 36.99954 | 19 |
| AATTCGG | 450 | 0.0 | 36.996582 | 20 |