FastQCFastQC Report
Mon 6 Jun 2016
ERR1379154.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379154.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551568
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCAACATCTCGTATGCC9460.1715110376236475Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT1050.040.7139642
TCTCGTA1050.040.7139641
ACCGTTC1000.040.49967230
GAGCGGT1100.038.863326
TCGTATG1100.038.8633243
GACCGTT1050.038.57111729
CGGTTCA1200.037.49979
ATCTCGT1150.037.17361540
GAGACCG1150.037.17361527
CCGAGAC1150.037.17361525
AGAGCGG1150.037.1736155
CATCTCG1100.036.81788339
AGCGGTT1250.035.999717
CTACGCT250.002106243735.9997126
CCGTTCA1250.035.9997131
GCGGTTC1200.035.6247148
AGACCGT1300.034.61510528
AAGAGCG1250.034.2028244
ATGCCGA1250.034.19972222
AGACGGG401.5591873E-533.7497342