Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378925.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 892770 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCACTCAATCTCGTATGCC | 12196 | 1.366085329928201 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 6536 | 0.7321034532970417 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1363 | 0.15267090067990635 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 1605 | 0.0 | 36.307777 | 41 |
| CGTATGC | 1620 | 0.0 | 36.249367 | 44 |
| CCGCACT | 1645 | 0.0 | 36.245567 | 31 |
| CTCGTAT | 1610 | 0.0 | 36.195023 | 42 |
| CGCACTC | 1665 | 0.0 | 35.810184 | 32 |
| ATCTCGT | 1635 | 0.0 | 35.77919 | 40 |
| TCGTATG | 1635 | 0.0 | 35.77919 | 43 |
| GTATGCC | 1650 | 0.0 | 35.590286 | 45 |
| GACCGCA | 1705 | 0.0 | 34.8381 | 29 |
| AGACCGC | 1730 | 0.0 | 34.334663 | 28 |
| AATCTCG | 1715 | 0.0 | 34.241386 | 39 |
| ACCGCAC | 1745 | 0.0 | 34.16846 | 30 |
| GAGACCG | 1755 | 0.0 | 33.71736 | 27 |
| GCACTCA | 1820 | 0.0 | 32.76042 | 33 |
| AGATCGG | 935 | 0.0 | 32.7267 | 17 |
| ACTCAAT | 1850 | 0.0 | 32.47241 | 35 |
| TCAATCT | 1845 | 0.0 | 32.19456 | 37 |
| GCGCCCA | 35 | 2.820164E-4 | 32.1423 | 12 |
| CTCAATC | 1900 | 0.0 | 31.73629 | 36 |
| CACTCAA | 1890 | 0.0 | 31.666115 | 34 |