FastQCFastQC Report
Mon 6 Jun 2016
ERR1379102.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379102.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546536
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGCATATCTCGTATGCC24190.44260579357992885Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGCATATCTCGTATGCCGTC22450.41076891549687483Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT5720.10465916243394763Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3400.037.0544543
ATGCCGT3350.036.2643844
TGCCGTC3400.035.7310845
CGTGTCG300.0051478929.99646628
CGGAAGA4050.027.248931
GAAGAGC4750.023.2269153
ACCGGAG5650.022.29825627
TCGTATG5600.022.09560840
CGTATGC5650.021.90007441
CCGGAGC5800.021.72157528
TCTCGTA5700.021.70796638
AGACCGG5850.021.53592325
CTCGTAT5750.021.51920139
TATCTCG5750.021.51920136
GACCGGA5900.021.35341526
CGGAGCA5900.021.35341529
GCATATC5850.021.15135233
ATCTCGT5950.020.79586637
GAGACCG6100.020.28449224
GTATGCC6100.020.28449242