FastQCFastQC Report
Mon 6 Jun 2016
ERR1390707.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390707.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences699026
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG500.00226699422.4944217
CGGAAGC654.2450876E-420.76259425
GATCGGA550.003940675420.44947218
ATGCCCG550.003942308520.4480112
ATCGGAA600.00651732918.7453519
TGCCCGG800.00171277916.87081513
ACGGAAG800.001713599116.8696124
CGGCTAA952.8227066E-416.57483717
CCGGCTA1004.1719928E-415.74609316
ACGGGAT900.003758155714.99628113
AACGGAA950.005384626314.20598623
CGCCACC1150.001183842913.7217035
CGAGTAG1000.007452840513.5256795
CCGAGTA1000.00746699113.5218024
CGGGATT1000.007559519713.49665214
TCCCGAG1200.001633518113.1480812
CCCGAGT1200.001635282613.1461953
GGGTGAC1250.002255397412.59597428
GCCCGGC1454.8544476E-412.41071414
GAGACGG2054.8354013E-612.06931327