FastQCFastQC Report
Mon 6 Jun 2016
ERR1390635.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390635.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1385010
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTAGCG352.8241417E-432.13612739
TTAGCGA406.1782583E-428.11606640
CCGCAAT1159.094947E-1225.426731
GACCGGG450.001215053725.0408765
ACGACAC551.3700107E-424.541236
CGCAATG1252.910383E-1123.3934132
AGACCGC1305.0931703E-1122.49528928
TCTCGTA1405.456968E-1222.49285141
CGTATGC1305.0931703E-1122.4920444
CTCGTAT1358.367351E-1121.65942
AGATCGG1201.1097654E-820.61844817
GTACTCG550.003945014420.4473144
TCGTATG1452.2009772E-1020.16527743
GACCGCA1703.6379788E-1219.84878329
GATCGGA1251.774606E-819.7937118
ATCTCGT1603.8198777E-1119.68124640
GAGACCG1503.45608E-1019.49591427
CACCGCG706.9977075E-419.2802838
ACTCTCG600.006521750718.7447222
TGCGCCT600.006521750718.7447216