FastQCFastQC Report
Mon 6 Jun 2016
ERR1379319.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379319.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467066
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGGAT250.00210583136.031
ATCTCGT300.005144166830.00000240
AACCCGG850.002562108715.88235322
CGTTGGA850.002562108715.8823535
TTCGTTG1000.007542202713.53
GCCACCA3002.669749E-710.56
GGCTAAT2504.3314747E-59.90000118
GCACTCC1900.00460974369.47368416
GCTTGAA3104.595069E-69.43548417
GGAGGTT2000.0070299579.034
CTACTAA2300.00222060538.8043487
TGAGGCA3206.8287656E-58.43752
GCTCACT3003.1511506E-48.2511
ACTGCAA2500.00471884348.115
TTGAACC3401.3838444E-47.941176419
GCTAATT3755.0527437E-57.819
CACACCT2650.007958737.641509516
GCCTGGG3000.00286554667.524
CCACCAC3000.00286554667.57
CTTGAAC4252.9584657E-57.41176518