FastQCFastQC Report
Mon 6 Jun 2016
ERR1378758.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378758.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences605225
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACCG504.8734364E-835.99920727
CCCGGAT250.002106549535.99920745
AGACCGA606.4228516E-933.74925628
CATCTCG501.97991E-631.49930839
GACCGAG602.4162364E-729.99933829
CTCGTAT608.184577E-626.2494242
CGAGAGT709.2971277E-725.71371832
ACCGAGA801.0522854E-725.31194130
CGTATGC651.5224627E-524.23023644
TCGTATG651.5224627E-524.23023643
CCGAGAC751.6957583E-623.99947225
AGAGCGG802.969331E-622.5013645
GCGGTTC802.971463E-622.4995048
AATGCCG802.971463E-622.49950421
ATGCCGA802.971463E-622.49950422
ATCTCGT754.598791E-520.99953840
TCTCGTA754.598791E-520.99953841
AGCGGTT908.242223E-619.999567
TGCCGAG908.242223E-619.9995623
CGAGACC1251.7636921E-819.79956426