Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379149.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 578171 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAAGTAATCTCGTATGCC | 1171 | 0.20253523611526691 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 145 | 0.0 | 41.895428 | 41 |
| CGTATGC | 150 | 0.0 | 40.498913 | 44 |
| GACCGTA | 150 | 0.0 | 40.498913 | 29 |
| TCGTATG | 150 | 0.0 | 40.498913 | 43 |
| GAGACCG | 160 | 0.0 | 39.37394 | 27 |
| CTCGTAT | 155 | 0.0 | 39.192493 | 42 |
| CCGTAAG | 155 | 0.0 | 39.192493 | 31 |
| GCGGTTC | 160 | 0.0 | 37.967728 | 8 |
| CGGTTCA | 160 | 0.0 | 37.967728 | 9 |
| AATGCCG | 160 | 0.0 | 37.967728 | 21 |
| AGACCGT | 160 | 0.0 | 37.967728 | 28 |
| CCGAGAC | 160 | 0.0 | 37.967728 | 25 |
| CGGAAGA | 165 | 0.0 | 36.83312 | 1 |
| ACCGTAA | 165 | 0.0 | 36.817192 | 30 |
| GAGCGGT | 170 | 0.0 | 35.737423 | 6 |
| AGAGCGG | 170 | 0.0 | 35.737423 | 5 |
| ATCTCGT | 170 | 0.0 | 35.734333 | 40 |
| ATGCCGA | 170 | 0.0 | 35.734333 | 22 |
| AGCGGTT | 175 | 0.0 | 34.713352 | 7 |
| GTATGCC | 175 | 0.0 | 34.713352 | 45 |