FastQCFastQC Report
Mon 6 Jun 2016
ERR1379169.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379169.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483456
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTACATCTCGTATGCC10030.20746458829759068Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT1250.043.19930342
GAGACCG1250.043.19930327
AGACCGT1300.041.53779228
CGTATGC1350.039.9993644
TCTCGTA1350.039.9993641
GCGGTTC1400.038.57488
GACCGTG1350.038.33271829
AGCGGTT1450.037.2446337
GAGCGGT1450.037.2446336
TCGTATG1450.037.24078443
CGTGTTA1400.036.96368832
ACCGTGT1550.036.28973830
ATGCCGA1550.036.28973822
ATCTCGT1500.035.9994240
CATCTCG1550.034.83814639
AATGCCG1550.034.83814621
CCGAGAC1550.034.83814625
AGAGCGG1600.033.752955
CGGAAGA1600.033.7494541
CGGTTCA1600.033.7494549