FastQCFastQC Report
Mon 6 Jun 2016
ERR1379176.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379176.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401227
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATCCAATCTCGTATGCC12020.29958103517460194Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGT1350.044.9991328
CCGTATC1450.043.44743331
GACCGTA1400.043.39201729
ATCTCGT1500.041.99918440
CGTATGC1450.041.8957444
GAGACCG1450.041.8957427
AATCTCG1600.040.7804639
CGTATCC1550.040.6443732
CTCGTAT1500.040.49921442
TCGTATG1500.040.49921443
ACCGTAT1600.039.37423730
TCTCGTA1550.039.19278741
AGAGCGG1700.037.0627255
CGGAAGA1750.036.0082781
GCGGTTC1750.035.9993068
AGCGGTT1750.035.9993067
GTATGCC1700.035.734645
CCGAGAC1700.035.734625
ATGCCGA1850.034.05339422
GAGCGGT1900.033.1613856