Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378918.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 754684 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGCTGATCTCGTATGCC | 11425 | 1.513878656497289 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 5867 | 0.7774114728813649 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1211 | 0.16046451229918748 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GTATGCC | 1395 | 0.0 | 38.870564 | 45 |
| AGACCGC | 1410 | 0.0 | 38.776196 | 28 |
| TCTCGTA | 1385 | 0.0 | 38.663864 | 41 |
| CGTATGC | 1405 | 0.0 | 38.59391 | 44 |
| TCGTATG | 1400 | 0.0 | 38.571033 | 43 |
| ATCTCGT | 1380 | 0.0 | 38.477863 | 40 |
| CTCGTAT | 1405 | 0.0 | 38.43377 | 42 |
| GAGACCG | 1425 | 0.0 | 38.368023 | 27 |
| GACCGCT | 1435 | 0.0 | 38.100655 | 29 |
| CCGCTGC | 1445 | 0.0 | 37.992687 | 31 |
| ACCGCTG | 1440 | 0.0 | 37.96836 | 30 |
| CGCTGCT | 1470 | 0.0 | 37.499615 | 32 |
| GCTGATC | 1470 | 0.0 | 36.428196 | 36 |
| GATCTCG | 1500 | 0.0 | 35.399635 | 39 |
| CGAGACC | 1580 | 0.0 | 34.74648 | 26 |
| TGCTGAT | 1575 | 0.0 | 34.42822 | 35 |
| CTGATCT | 1605 | 0.0 | 33.223957 | 37 |
| CTGCTGA | 1685 | 0.0 | 32.714794 | 34 |
| AGATCGG | 920 | 0.0 | 31.304026 | 17 |
| GCTGCTG | 1795 | 0.0 | 30.835335 | 33 |