Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378632.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 509388 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2686 | 0.5272994259778401 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1828 | 0.3588620069573684 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 370 | 0.0 | 42.566452 | 13 |
| CGTCATA | 370 | 0.0 | 42.566452 | 24 |
| GACGTCA | 385 | 0.0 | 40.908016 | 22 |
| ATGACGT | 385 | 0.0 | 40.908016 | 20 |
| GATGACG | 385 | 0.0 | 40.908016 | 19 |
| AGCCGAT | 390 | 0.0 | 40.38356 | 15 |
| TGACGTC | 390 | 0.0 | 40.38356 | 21 |
| ACGTCAT | 390 | 0.0 | 40.38356 | 23 |
| CCGATGA | 395 | 0.0 | 39.872375 | 17 |
| CGATGAC | 395 | 0.0 | 39.872375 | 18 |
| AGATTCG | 75 | 0.0 | 38.99898 | 10 |
| AAGCCGA | 405 | 0.0 | 38.88787 | 14 |
| GCGGTCT | 305 | 0.0 | 38.35965 | 36 |
| GTCATAA | 415 | 0.0 | 37.950813 | 25 |
| TTCGGTA | 310 | 0.0 | 37.740948 | 22 |
| CGGTATT | 315 | 0.0 | 37.141884 | 24 |
| TATGCCG | 85 | 0.0 | 37.057854 | 43 |
| GCCGATG | 425 | 0.0 | 37.057854 | 16 |
| GAATTCG | 315 | 0.0 | 36.427616 | 19 |
| AGGCGGT | 325 | 0.0 | 35.999058 | 34 |