FastQCFastQC Report
Mon 6 Jun 2016
ERR1379365.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379365.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences756880
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTGAGATCTCGTATGCC18370.24270690201881406Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT2250.039.99870742
TCGTATG2350.039.2540543
TCTCGTA2300.039.12917341
CGTATGC2350.038.29663544
CCGTGTG2500.036.8988131
GACCGTG2450.036.7335129
GAGACCG2500.035.9988427
AAGAGCG2550.035.2999734
AGACCGT2550.035.29297628
CGTGTGA2600.034.61426532
GCGGTTC2650.033.9611668
CGGAAGA2800.032.956251
AGCGGTT2800.032.9453627
GAGCGGT2750.032.7327046
ATCTCGT2750.032.72621540
GTATGCC2800.032.1418245
CCGAGAC2800.032.1418225
CGGTTCA2850.031.5779299
ACCGTGT2850.031.57792930
AGAGCGG2900.031.0396335