FastQCFastQC Report
Mon 6 Jun 2016
ERR1379211.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379211.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575282
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAATTCATCTCGTATGCC12850.2233687130833226Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC1600.042.18692844
GACCGCA1550.042.09620729
ACCGCAA1650.040.90853530
CATCTCG1650.040.90853539
CCGCAAT1650.040.90853531
AGACCGC1600.040.78069728
CTCGTAT1700.039.70534542
CGCAATT1700.039.70534532
CCGAGAC1650.039.54491825
CGGTTCA1800.038.7494749
GTATGCC1800.038.74947445
TCTCGTA1750.038.57090841
TCGTATG1750.038.57090843
GCGGTTC1850.037.705478
ATCTCGT1850.036.48599240
TGCCGAG1850.036.48599223
GAGACCG1800.036.24950827
AAGAGCG1950.035.7718544
AGCGGTT1950.035.7718547
GAGCGGT1950.035.7718546