FastQCFastQC Report
Mon 6 Jun 2016
ERR1378595.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378595.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1556833
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA29650.19045074198709816No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA22930.14728618933437307No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG3800.039.66884213
CGTCATA3950.038.16365424
AATTCGG3200.037.96663720
TCGGTAT3200.037.96663723
AGCCGAT3950.037.59284215
TCGGGGA3250.037.38253414
ATGACGT4050.037.2201520
CCGATGA4100.036.76624717
AAGCCGA4150.036.3232814
TTCGGTA3350.036.26663622
TGACGTC4300.036.10264221
GGCGGTC3400.035.73445535
GACGTCA4350.035.17045622
GCCGATG4300.034.53296316
ACGTCAT4400.034.25945723
CGGTATT3550.034.22454524
CGATGAC4350.034.13603218
GCGGTCT3600.033.74920736
GAATTCG3650.033.28581619
ATTCGGT3800.031.97190321