Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378613.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 561806 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3357 | 0.5975372281534908 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2288 | 0.4072580214522451 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCCGTC | 638 | 0.11356233290495295 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 475 | 0.0 | 43.10177 | 15 |
| ATGACGT | 485 | 0.0 | 42.213074 | 20 |
| CCGATGA | 490 | 0.0 | 41.782326 | 17 |
| AAGCCGA | 490 | 0.0 | 41.782326 | 14 |
| TAAGCCG | 490 | 0.0 | 41.782326 | 13 |
| TCGGTAT | 295 | 0.0 | 41.1831 | 23 |
| CGATGAC | 505 | 0.0 | 40.986774 | 18 |
| TGACGTC | 500 | 0.0 | 40.946682 | 21 |
| GATGACG | 500 | 0.0 | 40.946682 | 19 |
| CGTCATA | 500 | 0.0 | 40.946682 | 24 |
| ACGTCAT | 510 | 0.0 | 40.143803 | 23 |
| CGGTATT | 310 | 0.0 | 39.916115 | 24 |
| GCGGTCT | 305 | 0.0 | 39.832832 | 36 |
| GACGTCA | 515 | 0.0 | 39.75406 | 22 |
| CTCGGGG | 240 | 0.0 | 39.371807 | 13 |
| GAATTCG | 315 | 0.0 | 39.282528 | 19 |
| TCGGGGA | 310 | 0.0 | 39.190365 | 14 |
| GGCGGTC | 310 | 0.0 | 39.190365 | 35 |
| TTCGGTA | 310 | 0.0 | 39.190365 | 22 |
| GCCGATG | 530 | 0.0 | 39.053436 | 16 |