Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390603.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 83375 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 91 | 0.10914542728635683 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCC | 85 | 0.10194902548725637 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGATCGG | 25 | 3.860254E-5 | 44.9988 | 17 |
| GATCGGA | 25 | 3.860254E-5 | 44.9988 | 18 |
| TCGGAAG | 25 | 3.860254E-5 | 44.9988 | 20 |
| ATCGGAA | 30 | 1.1310407E-4 | 37.499 | 19 |
| CCGAGAT | 35 | 2.798576E-4 | 32.142 | 14 |
| GCGGTTC | 40 | 6.118852E-4 | 28.124252 | 28 |
| GAGATCG | 50 | 7.081686E-5 | 26.999279 | 16 |
| AAGAGCG | 45 | 0.0012172218 | 24.999332 | 24 |
| CGGTTCA | 45 | 0.0012172218 | 24.999332 | 29 |
| AGCGGTT | 45 | 0.0012172218 | 24.999332 | 27 |
| CGAGATC | 45 | 0.0012172218 | 24.999332 | 15 |
| GGTTCAG | 45 | 0.0012172218 | 24.999332 | 30 |
| AGAGCGG | 45 | 0.0012172218 | 24.999332 | 25 |
| CGGAAGA | 50 | 0.002247515 | 22.4994 | 21 |
| GAGCGGT | 55 | 0.003907058 | 20.453999 | 26 |
| ATCTTCA | 80 | 0.0016932403 | 16.874552 | 5 |
| AATATCT | 100 | 4.1103628E-4 | 15.749579 | 2 |
| ATATCTT | 100 | 4.1103628E-4 | 15.749579 | 3 |
| TATCTTC | 100 | 4.1103628E-4 | 15.749579 | 4 |
| ATATCCA | 90 | 0.0037158194 | 14.999599 | 3 |