FastQCFastQC Report
Mon 6 Jun 2016
ERR1379264.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379264.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences639475
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT451.9264917E-839.9988176
CTCGTAT501.9790496E-631.50153442
AATGCCG501.9802574E-631.49907121
GCGGTTC651.4018951E-831.1529258
AGAGCGG602.4134533E-730.0038055
AGCGGTT602.416764E-729.9991137
ATGCCGA554.162097E-628.63551722
CGTATGC608.18103E-626.25127844
GACCGGG709.2991104E-725.71352629
AGACCGG709.2991104E-725.71352628
TCTCGTA651.5218038E-524.23194941
TCGTATG651.5218038E-524.23194943
CGGAAGA702.6979244E-522.5028551
CCGGGAT702.7011865E-522.49933631
CCGAGAC702.7011865E-522.49933625
ACCGGGA754.5995803E-520.9993830
CGGTTCA908.243958E-619.9994099
ATCTCGT807.553473E-519.68845740
GAGACCG807.558015E-519.68691827
TGCCGAG807.558015E-519.68691823