FastQCFastQC Report
Mon 6 Jun 2016
ERR1379148.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379148.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402606
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACATAATCTCGTATGCC7700.19125398031822674Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAA1150.041.0860529
GAGACCG1150.041.0860527
AGACCGA1150.041.0860528
CTCGTAT1100.040.90818842
CGAACAT1250.039.5991332
ACCGAAC1250.037.79916830
CCGAACA1250.037.79916831
CGTATGC1200.037.49917244
AGATCGG250.002105714335.99920717
TCTCGTA1250.035.99920741
TCGTATG1250.035.99920743
GCGGTTC1400.035.3563588
GAGCGGT1400.035.3563586
AGAGCGG1400.035.3563585
ATCTCGT1350.034.99922640
CGGAAGA1450.034.145661
CGAGACC1400.033.74925226
AGCGGTT1500.032.999277
AAGAGCG1550.031.9427134
CCGAGAC1500.031.49930425