FastQCFastQC Report
Mon 6 Jun 2016
ERR1390631.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390631.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences615085
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG250.0021096235.9886243
CCTTCGT1251.720764E-819.842131
ATCGGAA1151.5976366E-719.55903227
CTTCGTT1202.4368637E-718.7898982
GATCGGA1202.5002555E-718.74407226
CCGTGCC600.006519022418.74407210
ACCGTGC600.006519022418.7440729
AGATCGG1253.838777E-717.9943125
TCGGAAG1253.838777E-717.9943128
CGAGATC1406.484879E-817.67298323
CCGAGAC1205.180793E-616.86966545
ATGCCGA2101.07320375E-1016.06634719
TCGTATG850.00256876115.87733140
CCGAGAT1602.9670628E-715.463860522
GCGGTTC2252.9467628E-1015.0282445
TTCGTTG1502.519033E-615.0282443
CGTATGC900.003759177914.99525841
GAGATCG1502.5772424E-614.99525724
TGCCGAG2304.2382453E-1014.66927420
AATGCCG2408.039933E-1014.05805518