FastQCFastQC Report
Mon 6 Jun 2016
ERR1379021.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379021.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1485044
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT55670.37487104759185585Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGACATAAATCTCGTATGCCGTC32660.2199261436024791Illumina Paired End PCR Primer 2 (96% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG7600.035.81861528
TATGCCG4100.035.6790143
ATCGGAA7700.035.6456227
AGATCGG7700.035.3534425
GATCGGA7850.034.67789526
AATGCCG12650.032.9016918
ATGCCGT4550.032.15031444
ATGCCGA13000.032.01587719
TGCCGAG13350.031.34503220
TGCCGTC4800.030.94467745
CGACATA5050.028.95736329
CGAGATC9600.028.35640323
CGGAAGA9850.028.32190729
GAATGCC14950.028.14086517
CCGAGAT9800.028.0072722
GCCGAGA15100.027.8613221
GAGATCG9850.027.636724
ACCGACA5450.026.83205427
GACCGAC5600.026.51507826
TCTCGTA5550.026.3521438