FastQCFastQC Report
Mon 6 Jun 2016
ERR1379338.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379338.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences964206
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATGAATCTCGTATGCC11340.11760972240371871Illumina Paired End PCR Primer 2 (97% over 37bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAT1700.037.0576329
CGTATGC1750.036.00257544
TCGTATG1850.034.05648443
CCGATAT1850.034.0529531
ACCGATA1850.034.0529530
CGATATG1850.034.0529532
CTCGTAT1950.032.3142
AGACCGA1950.032.3066528
GTATGCC2100.030.00214445
AAGAGCG2200.028.6398964
AGCGGTT2200.028.635447
TCTCGTA2200.028.6354441
GCGGTTC2250.027.99918
AATCTCG2250.027.999139
CCGAGAC2350.027.7650625
AGAGCGG2300.027.3946825
GAGCGGT2300.027.3932616
GAGACCG2300.027.3904227
CGGTTCA2400.027.1866239
CGGAAGA2500.026.1059281