FastQCFastQC Report
Mon 6 Jun 2016
ERR1379228.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379228.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519328
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTC507.152327E-526.9992498
CGGTTCA507.152327E-526.9992499
GACCGAG507.152327E-526.99924929
GAGCGGT507.152327E-526.9992496
AGACCGA450.001225848224.99930428
AAGAGCG551.3661574E-424.5471344
AGAGCGG551.3661574E-424.5471345
TCGTATA602.4654472E-422.4993749
CGAGAAC500.002263317122.49937432
ATGCCGA602.4654472E-422.49937422
CGTATAA654.234716E-420.76865410
GAGACCG550.00393431120.45397827
CCGAGAC550.00393431120.45397825
AGCGGTT706.9777214E-419.2851777
TGCCGAG706.9777214E-419.28517723
TCTTCGT901.8635899E-417.4995126
TTCGTAT800.00170945916.874538
CTTCGTA850.002563102415.881917
CGGAAGA900.00374132415.0053621
ATCTTCG1056.025832E-415.0010275