FastQCFastQC Report
Mon 6 Jun 2016
ERR1379327.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379327.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433809
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGGA501.0786607E-940.4986529
AGACCGG501.0786607E-940.4986528
CTCGTAT451.9221261E-840.00327742
TCTCGTA451.9221261E-840.00327741
GAGACCG552.741217E-936.81695627
CCGGAAA552.744855E-936.81271431
CGTATGC504.863432E-836.0029544
TCGTATG504.863432E-836.0029543
GAGCGGT653.6561687E-1034.6142356
AGAGCGG606.4082997E-933.7527665
GCGGTTC606.4210326E-933.7449878
CGGAAGA651.3887984E-831.1779671
AAGAGCG651.394983E-831.1635864
ACCGGAA651.39971235E-831.1528130
CGGTTCA651.4013494E-831.1492189
TGCCGAG651.4013494E-831.14921823
TATCTCG602.4113615E-730.0024639
CGGAAAT751.7007551E-929.99554432
CCGAGAC702.8783688E-828.92760725
AGCGGTT755.6239514E-826.9991027