FastQCFastQC Report
Mon 6 Jun 2016
ERR1379044.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379044.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences934151
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAC451.9284926E-839.99790629
ACCGACG504.879621E-835.99811630
TACTGCG250.00210744835.99811639
CGACGAT458.701172E-734.9981732
CCGACGA458.701172E-734.9981731
GCGGTTC651.4037141E-831.1522188
CGGAAGA856.4483174E-926.4819581
GACGATA608.192728E-626.24862533
CCGAGAC801.0538861E-725.31117625
AGAGCGG751.6931135E-624.0064535
CGTATGC751.697852E-623.99874544
CGGTTCA751.697852E-623.9987459
ATGCCGA751.697852E-623.99874522
ACGATAA702.7033864E-522.49882334
TCGTATG855.0328254E-621.17536243
CGATAAT754.603304E-520.99890135
ATGCCCG654.2389077E-420.76814736
AATGCCG1109.984615E-820.45347421
AGACCGA908.252266E-619.99895328
TGCCGAG908.252266E-619.99895323