FastQCFastQC Report
Mon 6 Jun 2016
ERR1379207.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379207.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412250
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGTTATCTCGTATGCC10290.24960582171012735Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA207.028391E-444.9995118
CGATCGT1400.040.1781432
CGTATGC1350.039.9995744
TCGTATG1350.039.9995743
CGGTTCA1450.038.7926839
CTCGTAT1400.038.57101442
CCGATCG1400.038.57101431
GACCGAT1400.038.57101429
GAGACCG1400.038.57101427
AGAGCGG1550.037.741535
GCGGTTC1500.037.4995968
ACCGATC1450.037.24097430
ATCGTTA1450.037.24097434
TATCTCG1450.037.24097439
AGACCGA1450.037.24097428
CGGAAGA1550.036.2943341
ATCTCGT1500.035.9996140
TCGTTAT1500.035.9996135
TCTCGTA1500.035.9996141
CCGAGAC1500.035.9996125