Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378774.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 878812 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTACACATCTCGTATGCC | 1224 | 0.13927893565404204 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTACACATCTCGTATGCCGTC | 1116 | 0.1269896178022148 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 160 | 0.0 | 36.56019 | 43 |
| ATGCCGT | 165 | 0.0 | 35.4523 | 44 |
| TGCCGTC | 165 | 0.0 | 35.4523 | 45 |
| ACCGTTA | 275 | 0.0 | 21.271383 | 27 |
| CCGGCTA | 75 | 4.6032925E-5 | 20.998672 | 16 |
| GACCGTT | 280 | 0.0 | 20.891535 | 26 |
| GAGACCG | 280 | 0.0 | 20.891535 | 24 |
| CGTATGC | 295 | 0.0 | 20.591917 | 41 |
| AGACCGT | 285 | 0.0 | 20.525019 | 25 |
| CGGAAGA | 325 | 0.0 | 20.087082 | 1 |
| CTCGTAT | 295 | 0.0 | 19.829254 | 39 |
| CGTTACA | 295 | 0.0 | 19.829254 | 29 |
| TCGTATG | 295 | 0.0 | 19.829254 | 40 |
| TCTCGTA | 300 | 0.0 | 19.498766 | 38 |
| ACGCCCG | 70 | 6.984651E-4 | 19.284494 | 12 |
| CCGTTAC | 310 | 0.0 | 18.869774 | 28 |
| CGCCCGG | 110 | 2.2561126E-6 | 18.407927 | 13 |
| GCGGTTC | 455 | 0.0 | 18.302835 | 5 |
| ATCTCGT | 320 | 0.0 | 18.280094 | 37 |
| GTATGCC | 320 | 0.0 | 18.280094 | 42 |