Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379008.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 720052 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6342 | 0.8807697221867309 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTGAATCTCGTATGCCGTC | 3174 | 0.44080149766961274 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTGAATCTCGTATGCC | 1750 | 0.2430380028109081 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 817 | 0.11346402759800682 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 485 | 0.0 | 37.116898 | 43 |
| GATCGGA | 845 | 0.0 | 35.14636 | 26 |
| TCGGAAG | 855 | 0.0 | 34.998436 | 28 |
| ATCGGAA | 850 | 0.0 | 34.939613 | 27 |
| TGCCGTC | 525 | 0.0 | 34.717552 | 45 |
| AGATCGG | 860 | 0.0 | 34.271725 | 25 |
| ATGCCGT | 550 | 0.0 | 33.139484 | 44 |
| CCGAGAT | 915 | 0.0 | 32.949345 | 22 |
| CGAGATC | 910 | 0.0 | 32.883144 | 23 |
| GAGATCG | 940 | 0.0 | 31.594332 | 24 |
| ATGCCGA | 1570 | 0.0 | 30.667418 | 19 |
| AATGCCG | 1580 | 0.0 | 30.330921 | 18 |
| CCGCTAA | 30 | 0.0051471232 | 29.998657 | 11 |
| TGCCGAG | 1635 | 0.0 | 29.72344 | 20 |
| GCCGAGA | 1625 | 0.0 | 29.490988 | 21 |
| GAATGCC | 1670 | 0.0 | 28.831047 | 17 |
| GGAATGC | 1680 | 0.0 | 28.52551 | 16 |
| GACCGCA | 660 | 0.0 | 27.271507 | 26 |
| CCGCAGT | 660 | 0.0 | 27.271507 | 28 |
| CGGAAGA | 1105 | 0.0 | 27.080236 | 29 |