FastQCFastQC Report
Mon 6 Jun 2016
ERR1390672.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390672.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences870759
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGTCGA352.8231152E-432.1364617
AGATCGG651.4055331E-831.14764417
GCGGTTC803.4015102E-928.11778528
GATCGGA755.6466888E-826.99462518
ATCGGAA755.6466888E-826.99462519
AGAGCGG755.649963E-826.99307425
GAGCGGT856.495611E-926.46379926
AGCGGTT1003.6516212E-822.49422827
CGGTTCA955.542206E-721.31032229
CCGAGAC1009.072046E-720.24480645
AAGAGCG1051.4482994E-619.28076724
CGGAAGA1102.2602362E-618.4043721
TCGGAAG1102.2602362E-618.4043720
CGGGATT1209.764385E-514.99701414
GCCACCG1108.4831496E-414.3408616
ATGCCGA1453.106797E-513.96353811
CCGGCTA1352.655259E-413.33067916
CGAGATC1709.415842E-613.23265915
ACTAGAC3251.8189894E-1213.15122719
TGCCGAG1607.836645E-512.65300412