Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378818.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 736548 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGGTTATCTCGTATGCCGTC | 1107 | 0.1502957037423223 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGGTTATCTCGTATGCC | 940 | 0.12762236812807853 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 145 | 0.0 | 38.787952 | 43 |
| TGCCGTC | 165 | 0.0 | 35.44984 | 45 |
| ATGCCGT | 160 | 0.0 | 35.15158 | 44 |
| TTGCTCG | 50 | 0.0022655905 | 22.497013 | 45 |
| TCGGAAG | 165 | 0.0 | 21.816767 | 28 |
| TCTCGTA | 260 | 0.0 | 21.633211 | 38 |
| TCGTATG | 260 | 0.0 | 21.633211 | 40 |
| ACCGTTG | 260 | 0.0 | 21.631742 | 27 |
| CGTATGC | 265 | 0.0 | 21.223597 | 41 |
| GATCGGA | 170 | 0.0 | 21.173658 | 26 |
| GACCGTT | 270 | 0.0 | 20.830568 | 26 |
| ATCTTCG | 65 | 4.218711E-4 | 20.781992 | 5 |
| AGATCGG | 175 | 0.0 | 20.568699 | 25 |
| ATGCCGA | 460 | 0.0 | 20.54075 | 19 |
| AATGCCG | 450 | 0.0 | 20.497278 | 18 |
| TGCCGAG | 450 | 0.0 | 20.497278 | 20 |
| TATCTCG | 275 | 0.0 | 20.453217 | 36 |
| CCGTTGG | 280 | 0.0 | 20.087982 | 28 |
| ATCTCGT | 285 | 0.0 | 19.735561 | 37 |
| CTCGTAT | 285 | 0.0 | 19.735561 | 39 |