FastQCFastQC Report
Mon 6 Jun 2016
ERR1378769.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378769.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences889494
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAT352.8200133E-432.14257429
TTCGCCA500.002264325322.4998049
AGACCGA550.003936048620.45436728
GCGGTTC706.982183E-419.2855458
TTTCGCC600.006509694318.7498368
CCGTGTG600.006509694318.74983625
CCGAGTA750.001110020317.9998424
CGAGTAG800.001710534416.8748535
CGGTTCA800.001710534416.8748539
AGAGCGG800.001710534416.8748535
CGGAAGA850.002561817915.8848941
AGCGGTT850.002564702415.8822157
GAGCGGT850.002564702415.8822156
CCTTCGT1156.770486E-515.6546771
AGTGGCG1056.035357E-414.99986910
AGCGCTC1351.5808833E-514.9998687
TCGTTGG1402.2290293E-514.4641594
TGCCGAG950.005375061614.21040223
CGTTGGA1453.103058E-513.9653955
CGCTCCA1150.001201483113.6955329