Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379112.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1161489 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTAGATCTCGTATGCCGTC | 2698 | 0.23228803716608595 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTAGATCTCGTATGCC | 2488 | 0.21420779706049736 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 470 | 0.0 | 36.377968 | 43 |
| ATGCCGT | 485 | 0.0 | 35.71673 | 44 |
| TGCCGTC | 555 | 0.0 | 31.211914 | 45 |
| CTCGTAT | 675 | 0.0 | 24.996555 | 39 |
| TCTCGTA | 690 | 0.0 | 24.451046 | 38 |
| CGTATGC | 685 | 0.0 | 24.30322 | 41 |
| CGGTGTA | 700 | 0.0 | 24.10382 | 29 |
| ACCGGTG | 700 | 0.0 | 24.101746 | 27 |
| GACCGGT | 705 | 0.0 | 23.611732 | 26 |
| TCGTATG | 725 | 0.0 | 23.582956 | 40 |
| CCGGTGT | 720 | 0.0 | 23.43326 | 28 |
| GAGACCG | 770 | 0.0 | 21.910677 | 24 |
| ATCTCGT | 775 | 0.0 | 21.772133 | 37 |
| GTATGCC | 765 | 0.0 | 21.761707 | 42 |
| AATGCCG | 975 | 0.0 | 21.686518 | 18 |
| GAGCGGT | 995 | 0.0 | 21.278088 | 3 |
| CGGAAGA | 575 | 0.0 | 21.165796 | 1 |
| GTAGATC | 800 | 0.0 | 21.092659 | 33 |
| CGGTTCA | 1015 | 0.0 | 21.078901 | 6 |
| GCGGTTC | 1030 | 0.0 | 20.771925 | 5 |