Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390686.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 521105 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 609 | 0.11686704215081414 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 45 | 8.7204717E-7 | 34.983208 | 44 |
| CTCGTAT | 45 | 8.7204717E-7 | 34.983208 | 42 |
| CGATTAC | 50 | 1.9862946E-6 | 31.484888 | 32 |
| CCGATTA | 60 | 8.210853E-6 | 26.237408 | 31 |
| GTATGCC | 60 | 8.210853E-6 | 26.237408 | 45 |
| TCGTATG | 60 | 8.210853E-6 | 26.237408 | 43 |
| TCTCGTA | 65 | 1.5273401E-5 | 24.219145 | 41 |
| CATCTCG | 70 | 2.705341E-5 | 22.493523 | 39 |
| GACCGAT | 70 | 2.7093558E-5 | 22.489206 | 29 |
| AGACCGA | 70 | 2.7093558E-5 | 22.489206 | 28 |
| ACGGGAT | 85 | 5.0402286E-6 | 21.168343 | 13 |
| ACCGATT | 75 | 4.6134628E-5 | 20.989923 | 30 |
| CTTCGTA | 65 | 4.231201E-4 | 20.771225 | 7 |
| AGATCGG | 65 | 4.2449305E-4 | 20.76126 | 17 |
| GATCGGA | 55 | 0.0039424514 | 20.446693 | 13 |
| GAACCCG | 55 | 0.0039446433 | 20.444733 | 21 |
| ATCTCGT | 80 | 7.569602E-5 | 19.681831 | 40 |
| CGTTGGA | 105 | 1.4057423E-6 | 19.337692 | 5 |
| CCTTCGT | 70 | 6.877874E-4 | 19.32653 | 1 |
| AACCCGG | 60 | 0.0065238774 | 18.741005 | 22 |