Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379161.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 377475 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTGATATCTCGTATGCC | 858 | 0.22729982118021064 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGCT | 95 | 0.0 | 42.629948 | 29 |
| GAGACCG | 95 | 0.0 | 42.629948 | 27 |
| TATCTCG | 105 | 0.0 | 40.71273 | 39 |
| AAGAGCG | 120 | 0.0 | 39.389145 | 4 |
| ATCTCGT | 110 | 0.0 | 38.862152 | 40 |
| CGTATGC | 110 | 0.0 | 38.862152 | 44 |
| CTCGTAT | 110 | 0.0 | 38.862152 | 42 |
| TCTCGTA | 110 | 0.0 | 38.862152 | 41 |
| AGAGCGG | 120 | 0.0 | 37.503532 | 5 |
| GCGGTTC | 120 | 0.0 | 37.498566 | 8 |
| TCGTATG | 115 | 0.0 | 37.17249 | 43 |
| AGACCGC | 110 | 0.0 | 36.816776 | 28 |
| CGGAAGA | 125 | 0.0 | 36.012936 | 1 |
| GAGCGGT | 125 | 0.0 | 35.998623 | 6 |
| CGGTTCA | 120 | 0.0 | 35.62364 | 9 |
| AGCGGTT | 130 | 0.0 | 34.614063 | 7 |
| ACCGCTT | 125 | 0.0 | 34.198692 | 30 |
| CCGAGAC | 125 | 0.0 | 32.39876 | 25 |
| CCGCTTG | 135 | 0.0 | 31.665455 | 31 |
| AATGCCG | 135 | 0.0 | 31.665455 | 21 |