Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378906.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 896560 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGACTATCTCGTATGCC | 10259 | 1.1442625144998662 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 6174 | 0.688632104934416 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1122 | 0.12514499866155082 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ACCGAAG | 1415 | 0.0 | 37.36661 | 30 |
| GACCGAA | 1415 | 0.0 | 37.207603 | 29 |
| TCGTATG | 1405 | 0.0 | 37.154224 | 43 |
| TCTCGTA | 1400 | 0.0 | 37.126194 | 41 |
| TATCTCG | 1395 | 0.0 | 37.09797 | 39 |
| ATCTCGT | 1410 | 0.0 | 37.02247 | 40 |
| CTCGTAT | 1405 | 0.0 | 36.996136 | 42 |
| CCGAAGA | 1450 | 0.0 | 36.464657 | 31 |
| GAGACCG | 1445 | 0.0 | 36.435127 | 27 |
| GTATGCC | 1440 | 0.0 | 36.407425 | 45 |
| CGAAGAC | 1460 | 0.0 | 36.369007 | 32 |
| CGTATGC | 1455 | 0.0 | 36.341377 | 44 |
| AGACCGA | 1450 | 0.0 | 36.30949 | 28 |
| GACTATC | 1465 | 0.0 | 35.786137 | 36 |
| AGATCGG | 885 | 0.0 | 34.321228 | 17 |
| CGAGACC | 1580 | 0.0 | 33.4644 | 26 |
| GAAGACT | 1600 | 0.0 | 33.186718 | 33 |
| AGACTAT | 1595 | 0.0 | 33.14969 | 35 |
| AAGACTA | 1615 | 0.0 | 32.878483 | 34 |
| ACTATCT | 1585 | 0.0 | 32.650894 | 37 |