Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379109.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1105825 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATAGATCTCGTATGCC | 2336 | 0.21124499807835778 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATAGATCTCGTATGCCGTC | 2139 | 0.19343024438767437 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 275 | 0.0 | 35.996674 | 43 |
| ATGCCGT | 310 | 0.0 | 31.93253 | 44 |
| TGCCGTC | 325 | 0.0 | 29.76648 | 45 |
| CGGCATA | 545 | 0.0 | 22.703297 | 32 |
| CGTATGC | 525 | 0.0 | 21.855124 | 44 |
| CTCGTAT | 535 | 0.0 | 21.446615 | 42 |
| CGGAAGA | 580 | 0.0 | 21.365154 | 1 |
| TCGTATG | 545 | 0.0 | 21.0531 | 43 |
| TCTCGTA | 550 | 0.0 | 20.861708 | 41 |
| GTATGCC | 585 | 0.0 | 19.99815 | 45 |
| ACCGGCA | 625 | 0.0 | 19.79638 | 30 |
| AGACCGG | 615 | 0.0 | 19.752485 | 28 |
| ATCTCGT | 575 | 0.0 | 19.563408 | 40 |
| CCGGCAT | 670 | 0.0 | 18.803383 | 31 |
| GTCCGTG | 60 | 0.006517221 | 18.74657 | 23 |
| GGCATAG | 675 | 0.0 | 18.664097 | 33 |
| GAGACCG | 660 | 0.0 | 18.405724 | 27 |
| ATAGATC | 685 | 0.0 | 18.39163 | 36 |
| CCGAGAC | 695 | 0.0 | 17.478817 | 25 |
| GACCGGC | 710 | 0.0 | 17.42639 | 29 |