Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378964.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1091719 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5532 | 0.5067237998056277 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACACTATCTCGTATGCCGTC | 3223 | 0.29522248857077693 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 390 | 0.0 | 38.083553 | 43 |
| ATGCCGT | 415 | 0.0 | 35.789364 | 44 |
| TGCCGTC | 425 | 0.0 | 34.94726 | 45 |
| ATCGGAA | 780 | 0.0 | 34.611897 | 27 |
| TCGGAAG | 810 | 0.0 | 34.163223 | 28 |
| AGATCGG | 795 | 0.0 | 33.95884 | 25 |
| GATCGGA | 795 | 0.0 | 33.95884 | 26 |
| GACCGTA | 480 | 0.0 | 30.934383 | 26 |
| CTCGTAT | 485 | 0.0 | 30.62108 | 39 |
| CGTACAC | 485 | 0.0 | 30.615469 | 29 |
| CCGTACA | 490 | 0.0 | 30.30307 | 28 |
| ACCGTAC | 490 | 0.0 | 30.30307 | 27 |
| AATGCCG | 1415 | 0.0 | 30.049974 | 18 |
| TCTCGTA | 500 | 0.0 | 29.70245 | 38 |
| CCGAGAT | 905 | 0.0 | 29.582655 | 22 |
| TGCCGAG | 1445 | 0.0 | 29.4261 | 20 |
| TATCTCG | 505 | 0.0 | 29.408365 | 36 |
| CGGAAGA | 955 | 0.0 | 28.976137 | 29 |
| ATGCCGA | 1470 | 0.0 | 28.925655 | 19 |
| TCGTATG | 515 | 0.0 | 28.83733 | 40 |