Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378841.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 900192 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2904 | 0.3225978457928975 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTCAAATCTCGTATGCC | 2584 | 0.2870498738046995 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTCAAATCTCGTATGCCGTC | 2220 | 0.24661405566812414 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 280 | 0.0 | 35.355663 | 43 |
| ATGCCGT | 300 | 0.0 | 32.998615 | 44 |
| TGCCGTC | 315 | 0.0 | 31.427252 | 45 |
| ATCGGAA | 395 | 0.0 | 29.615719 | 27 |
| GATCGGA | 410 | 0.0 | 29.080914 | 26 |
| AGATCGG | 425 | 0.0 | 27.525198 | 25 |
| TCGGAAG | 435 | 0.0 | 27.41112 | 28 |
| CCGAGAT | 450 | 0.0 | 25.996021 | 22 |
| AATGCCG | 900 | 0.0 | 23.996326 | 18 |
| GAGATCG | 490 | 0.0 | 23.873898 | 24 |
| TGCCGAG | 905 | 0.0 | 23.863749 | 20 |
| ATGCCGA | 960 | 0.0 | 22.496557 | 19 |
| CGAGATC | 530 | 0.0 | 22.072094 | 23 |
| GCCGAGA | 995 | 0.0 | 21.70522 | 21 |
| TCGTATG | 510 | 0.0 | 21.61674 | 43 |
| CTCGTAT | 525 | 0.0 | 20.999119 | 42 |
| CGTATGC | 520 | 0.0 | 20.768358 | 44 |
| GACCGCT | 520 | 0.0 | 20.767206 | 29 |
| TCTCGTA | 525 | 0.0 | 20.570566 | 41 |
| AGACCGC | 525 | 0.0 | 20.569424 | 28 |