Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379021.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1485044 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5567 | 0.37487104759185585 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACATAAATCTCGTATGCCGTC | 3266 | 0.2199261436024791 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGGAAG | 760 | 0.0 | 35.818615 | 28 |
| TATGCCG | 410 | 0.0 | 35.67901 | 43 |
| ATCGGAA | 770 | 0.0 | 35.64562 | 27 |
| AGATCGG | 770 | 0.0 | 35.35344 | 25 |
| GATCGGA | 785 | 0.0 | 34.677895 | 26 |
| AATGCCG | 1265 | 0.0 | 32.90169 | 18 |
| ATGCCGT | 455 | 0.0 | 32.150314 | 44 |
| ATGCCGA | 1300 | 0.0 | 32.015877 | 19 |
| TGCCGAG | 1335 | 0.0 | 31.345032 | 20 |
| TGCCGTC | 480 | 0.0 | 30.944677 | 45 |
| CGACATA | 505 | 0.0 | 28.957363 | 29 |
| CGAGATC | 960 | 0.0 | 28.356403 | 23 |
| CGGAAGA | 985 | 0.0 | 28.321907 | 29 |
| GAATGCC | 1495 | 0.0 | 28.140865 | 17 |
| CCGAGAT | 980 | 0.0 | 28.00727 | 22 |
| GCCGAGA | 1510 | 0.0 | 27.86132 | 21 |
| GAGATCG | 985 | 0.0 | 27.6367 | 24 |
| ACCGACA | 545 | 0.0 | 26.832054 | 27 |
| GACCGAC | 560 | 0.0 | 26.515078 | 26 |
| TCTCGTA | 555 | 0.0 | 26.35214 | 38 |