FastQCFastQC Report
Mon 6 Jun 2016
ERR1378668.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378668.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1031964
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATTA552.752131E-936.8145731
TCTCGTA552.752131E-936.8145741
CGTATGC653.6743586E-1034.61199644
ACCGATT606.4374035E-933.74669330
CGATTAC606.4374035E-933.74669332
GACCGAT551.12848284E-732.72406429
AGCGGTT803.3978722E-928.1222467
AGCGACT406.169247E-428.12224614
CTCGTAT755.6434146E-826.99735542
GCGGTTC801.0545773E-725.3100228
AGACCGA751.698816E-623.99764828
CGGTTCA851.8950595E-723.8211969
ATCTCGT903.2878415E-722.49888440
GAGACCG802.9767962E-622.49779727
TCGTATG903.2893695E-722.49779543
CGGAAGA955.4895463E-721.3323081
AATGCCG1009.057385E-720.24899921
GAGCGGT1051.4392645E-619.2941076
ATGCCGA1051.445962E-619.28475822
AAGAGCG1102.2461627E-618.4171034