Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390636.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 720071 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1053 | 0.14623557954701688 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GTCGACA | 20 | 7.0421235E-4 | 44.986248 | 16 |
| TCGACAC | 20 | 7.0421235E-4 | 44.986248 | 17 |
| CGTATGC | 80 | 3.6379788E-12 | 33.737343 | 44 |
| TCTCGTA | 85 | 5.456968E-12 | 31.752796 | 41 |
| CCGGTAT | 85 | 5.456968E-12 | 31.752796 | 31 |
| CTCGTAT | 90 | 1.2732926E-11 | 29.988752 | 42 |
| GATCGGA | 220 | 0.0 | 28.627613 | 18 |
| AGATCGG | 225 | 0.0 | 27.991444 | 17 |
| ATCTCGT | 105 | 3.6379788E-12 | 27.846697 | 40 |
| GACCGGT | 100 | 4.5474735E-11 | 26.99175 | 29 |
| AGACCGG | 100 | 4.5474735E-11 | 26.99175 | 28 |
| ACCGGTA | 100 | 4.5474735E-11 | 26.989876 | 30 |
| TCGTATG | 100 | 4.5474735E-11 | 26.989876 | 43 |
| CGGTATG | 100 | 4.5474735E-11 | 26.989876 | 32 |
| CCGAGAC | 240 | 0.0 | 26.240156 | 45 |
| ATCGGAA | 240 | 0.0 | 26.240156 | 19 |
| TCGGAAG | 245 | 0.0 | 25.704641 | 20 |
| GAGACCG | 115 | 2.6557245E-10 | 23.471088 | 27 |
| GGATCTC | 130 | 5.0931703E-11 | 22.494688 | 38 |
| CCGAGAT | 280 | 0.0 | 22.493124 | 14 |