FastQCFastQC Report
Mon 6 Jun 2016
ERR1390790.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390790.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences942629
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAACTA651.5267015E-524.22394232
CTCGTAT754.611505E-520.99408542
GATCGGA754.611505E-520.99408518
CTGCTCG550.00394244820.44878416
CCGCGCC807.568282E-519.68508510
CGTATGC807.577546E-519.68195344
CCGAACT951.3186207E-518.9420331
GTGCGAT600.006520244818.74471918
ACCGCGC851.20528166E-418.5271389
CACCGCG851.20528166E-418.5271388
ACCGAAC851.2067532E-418.5241930
ATCGGAA851.2067532E-418.5241919
CCGTGCC750.001097947518.0293583
TCTCGTA1002.0509655E-517.99492841
AGATCGG952.8247436E-416.57427817
TCGGAAG952.8247436E-416.57427820
TCGTATG952.8247436E-416.57427843
ATCTCGT1156.7967696E-515.64776440
CCGCCAC1351.5559828E-515.0252624
CCGGCTA1806.890332E-814.99577416