FastQCFastQC Report
Mon 6 Jun 2016
ERR1378686.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378686.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences763941
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCTAT601.546141E-1037.4985832
CGTATGC653.6743586E-1034.61407544
AGACCGG651.4028046E-831.15266828
CTCGTAT801.0004442E-1030.93632942
TCTCGTA852.0372681E-1029.11654741
GCGGTTC803.3960532E-928.1220958
TCGTATG856.4774213E-926.46958743
AGCGGTT856.4810592E-926.4678557
ATGCCGA957.421477E-1026.04994222
AATGCCG901.1910743E-824.99741721
TATCTCG1001.3442332E-924.74906339
TGCCGAG1001.3442332E-924.74744223
ACCGGCT851.8926039E-723.82262830
GACCGGC851.8926039E-723.82262829
ATCTCGT1052.3646862E-923.57053640
CGGTTCA1052.3665052E-923.5689939
GAGACCG903.287223E-722.49767727
CCGAGAC1109.984069E-820.45243325
AAGAGCG1151.5876321E-719.5721664
GAGCGGT1151.5876321E-719.5721666