FastQCFastQC Report
Mon 6 Jun 2016
ERR1379039.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379039.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1063597
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC601.5643309E-1037.49913844
CCGGCAA504.879439E-835.99917631
GCGGTTC606.4301275E-933.750818
CTCGTAT651.4037141E-831.15313142
GAGCGGT702.8838258E-828.9306266
AGCGGTT755.637048E-827.0006487
AGACCGG709.3083145E-725.71369628
TCTCGTA801.0538679E-725.31191641
ACCGGCA751.6977883E-623.99944930
GACCGGC751.6977883E-623.99944929
AGAGCGG903.2842217E-722.5015985
CGGTTCA903.2871867E-722.4994839
CGGAAGA955.522161E-721.3193071
ATCTCGT955.532147E-721.31529840
CGGCAAG855.0326253E-621.17598332
GAGACCG855.0326253E-621.17598327
AATGCCG1051.44568E-619.2852721
TCGTATG1051.44568E-619.2852743
ATGCCGA1102.2561526E-618.40866922
CCGAGAC1153.4489312E-617.6082925