Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379123.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1185819 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAGAATCTCGTATGCCGTC | 2754 | 0.23224454996926175 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAGAATCTCGTATGCC | 2186 | 0.18434516566187586 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 360 | 0.0 | 35.619125 | 43 |
| ATGCCGT | 415 | 0.0 | 30.356438 | 44 |
| TGCCGTC | 445 | 0.0 | 28.309938 | 45 |
| TCGTATG | 560 | 0.0 | 23.299726 | 40 |
| CGGCTAG | 580 | 0.0 | 22.884157 | 29 |
| ACTAACG | 50 | 0.0022668228 | 22.49629 | 11 |
| CTCGTAT | 590 | 0.0 | 22.114994 | 39 |
| CGTATGC | 595 | 0.0 | 21.929157 | 41 |
| TCTCGTA | 600 | 0.0 | 21.746412 | 38 |
| CGGAAGA | 530 | 0.0 | 21.25159 | 1 |
| AGACCGG | 650 | 0.0 | 20.419708 | 25 |
| ATCTCGT | 665 | 0.0 | 19.96164 | 37 |
| GAGCGGT | 815 | 0.0 | 19.61619 | 3 |
| GCGGTTC | 805 | 0.0 | 19.580154 | 5 |
| AGCGGTT | 825 | 0.0 | 19.378418 | 4 |
| GTATGCC | 675 | 0.0 | 19.330145 | 42 |
| AAGAGCG | 840 | 0.0 | 19.308586 | 1 |
| AGAGCGG | 835 | 0.0 | 19.15281 | 2 |
| ACCGGCT | 695 | 0.0 | 19.097569 | 27 |
| CGGTTCA | 815 | 0.0 | 19.062817 | 6 |