Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378624.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 783735 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3770 | 0.48102993996695315 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2857 | 0.3645364823569191 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACGTCA | 380 | 0.0 | 43.22172 | 22 |
| CGTCATA | 380 | 0.0 | 43.22172 | 24 |
| TGACGTC | 385 | 0.0 | 42.6604 | 21 |
| ACGTCAT | 385 | 0.0 | 42.6604 | 23 |
| CCGATGA | 390 | 0.0 | 42.113476 | 17 |
| TAAGCCG | 395 | 0.0 | 41.58039 | 13 |
| GCCGATG | 400 | 0.0 | 41.06064 | 16 |
| CGATGAC | 405 | 0.0 | 40.553715 | 18 |
| TTCGGTA | 390 | 0.0 | 40.382786 | 22 |
| CGGTATT | 390 | 0.0 | 40.382786 | 24 |
| GATGACG | 410 | 0.0 | 40.05916 | 19 |
| AATTCGG | 400 | 0.0 | 39.373215 | 20 |
| GAATTCG | 400 | 0.0 | 39.373215 | 19 |
| AGCCGAT | 420 | 0.0 | 39.10537 | 15 |
| CCTCGGG | 370 | 0.0 | 38.917152 | 12 |
| ATTCGGT | 405 | 0.0 | 38.887123 | 21 |
| AAGCCGA | 425 | 0.0 | 38.645306 | 14 |
| ATGACGT | 425 | 0.0 | 38.645306 | 20 |
| GCGGTCT | 420 | 0.0 | 38.56968 | 36 |
| TCGGTAT | 410 | 0.0 | 38.41289 | 23 |