Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378760.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 415295 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCC | 428 | 0.10305927112052879 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGTATG | 40 | 3.4511868E-7 | 39.374897 | 43 |
| CGTATGC | 45 | 8.6823275E-7 | 34.999905 | 44 |
| CTCGTAT | 45 | 8.6823275E-7 | 34.999905 | 42 |
| ACCGAGT | 45 | 8.6823275E-7 | 34.999905 | 30 |
| CGTGATT | 35 | 2.815349E-4 | 32.146645 | 1 |
| CGAGTGT | 50 | 1.9776326E-6 | 31.499916 | 32 |
| GACCGAG | 50 | 1.9776326E-6 | 31.499916 | 29 |
| TCTCGTA | 50 | 1.9776326E-6 | 31.499916 | 41 |
| CGGTTCA | 55 | 4.1566072E-6 | 28.636288 | 9 |
| ATCTCGT | 65 | 4.8608854E-7 | 27.692232 | 40 |
| GAGCGGT | 60 | 8.175259E-6 | 26.249931 | 6 |
| AGACCGA | 60 | 8.175259E-6 | 26.249931 | 28 |
| GCGGTTC | 65 | 1.52073935E-5 | 24.230703 | 8 |
| AAGAGCG | 65 | 1.52073935E-5 | 24.230703 | 4 |
| CGGAAGA | 60 | 2.461865E-4 | 22.50265 | 1 |
| GAGACCG | 70 | 2.6976808E-5 | 22.49994 | 27 |
| CCGAGTG | 70 | 2.6976808E-5 | 22.49994 | 31 |
| AGAGCGG | 70 | 2.6976808E-5 | 22.49994 | 5 |
| CGCCACC | 70 | 2.6976808E-5 | 22.49994 | 5 |
| AGCGGTT | 75 | 4.5936424E-5 | 20.999943 | 7 |