Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379011.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1095565 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 7137 | 0.6514446883571491 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGATGATCTCGTATGCCGTC | 4376 | 0.3994286053314956 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGATGATCTCGTATGCC | 1370 | 0.12504963192507976 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 545 | 0.0 | 36.746178 | 44 |
| TATGCCG | 535 | 0.0 | 36.59183 | 43 |
| GATCGGA | 1030 | 0.0 | 35.16801 | 26 |
| ATCGGAA | 1030 | 0.0 | 35.16801 | 27 |
| TGCCGTC | 570 | 0.0 | 34.34496 | 45 |
| AGATCGG | 1080 | 0.0 | 33.748184 | 25 |
| TCGGAAG | 1120 | 0.0 | 33.14554 | 28 |
| AATGCCG | 1810 | 0.0 | 31.075676 | 18 |
| ACCGGTG | 640 | 0.0 | 30.935835 | 27 |
| GACCGGT | 640 | 0.0 | 30.935835 | 26 |
| CCGAGAT | 1190 | 0.0 | 30.628607 | 22 |
| ATGCCGA | 1845 | 0.0 | 30.486164 | 19 |
| CTCGTAT | 645 | 0.0 | 30.349977 | 39 |
| TGCCGAG | 1870 | 0.0 | 30.319225 | 20 |
| TCTCGTA | 655 | 0.0 | 29.886618 | 38 |
| GAGATCG | 1230 | 0.0 | 29.815472 | 24 |
| AGACCGG | 665 | 0.0 | 29.772835 | 25 |
| CGGAAGA | 1250 | 0.0 | 29.698402 | 29 |
| TCGTATG | 660 | 0.0 | 29.660204 | 40 |
| CGTATGC | 665 | 0.0 | 29.437195 | 41 |