FastQCFastQC Report
Mon 6 Jun 2016
ERR1379173.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379173.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513873
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTACAATCTCGTATGCC10690.20802805362414448Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCTTAC1300.043.2670832
CGTATGC1300.041.53639644
CCGCTTA1300.041.53639631
GACCGCT1250.041.3979429
ACCGCTT1350.039.99801330
ATCTCGT1300.039.8057140
CTCGTAT1300.039.8057142
GAGACCG1350.038.3314327
AGCGGTT1500.037.5090877
AGACCGC1400.036.9624528
CGGTTCA1550.036.2885179
GCGGTTC1500.036.0087248
GAGCGGT1500.036.0087246
TCTCGTA1450.035.68787841
AAGAGCG1600.033.7581754
AGAGCGG1600.033.7581755
GTATGCC1600.033.7483245
TCGTATG1650.032.72564343
AATCTCG1600.032.3421439
ATGCCGA1750.030.85560822