FastQCFastQC Report
Mon 6 Jun 2016
ERR1378636.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378636.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences788577
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA38520.48847480968884455No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA28780.3649611895857982No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCATA4150.042.2856424
TAAGCCG4200.041.7822413
CCGATGA4300.040.81056217
AGCCGAT4350.040.34147315
TCGGTAT3750.040.1966623
GACGTCA4450.039.940522
TGACGTC4450.039.940521
ATGACGT4400.039.8830520
ACGTCAT4400.039.8830523
GCCGATG4350.039.82427616
CGATGAC4450.039.43492518
TTCGGTA3850.039.15258822
AAGCCGA4500.038.49679614
GATGACG4650.037.73879619
GCGGTCT4000.037.6843736
ATTCGGT4100.036.76523621
GGCGGTC4100.036.76523635
CTCGGGG3700.036.4834513
CGGTATT4150.036.3222824
TCCTCGG3750.035.9970111