Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379072.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 458435 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGAGCATCTCGTATGCC | 481 | 0.10492218089805534 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGATGAG | 95 | 0.0 | 37.89308 | 32 |
| TCTCGTA | 90 | 0.0 | 37.498363 | 41 |
| CGGAAGA | 100 | 0.0 | 36.018074 | 1 |
| GAGCGGT | 100 | 0.0 | 36.002357 | 6 |
| AGAGCGG | 100 | 0.0 | 36.002357 | 5 |
| GCGGTTC | 100 | 0.0 | 35.99843 | 8 |
| CGGTTCA | 100 | 0.0 | 35.99843 | 9 |
| ACCGATG | 105 | 0.0 | 34.284218 | 30 |
| AGCGGTT | 105 | 0.0 | 34.284218 | 7 |
| ATCTCGT | 100 | 0.0 | 33.748528 | 40 |
| GAGACCG | 100 | 0.0 | 33.748528 | 27 |
| GACCGAT | 110 | 0.0 | 32.725845 | 29 |
| AGACCGA | 110 | 0.0 | 32.725845 | 28 |
| CGTATGC | 105 | 0.0 | 32.141453 | 44 |
| CTCGTAT | 105 | 0.0 | 32.141453 | 42 |
| AATGCCG | 105 | 0.0 | 32.141453 | 21 |
| ATGCCGA | 105 | 0.0 | 32.141453 | 22 |
| AAGAGCG | 115 | 0.0 | 31.306398 | 4 |
| CCGATGA | 115 | 0.0 | 31.302984 | 31 |
| CCGAGAC | 110 | 0.0 | 30.68048 | 25 |