Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378828.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 912980 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCACAAATCTCGTATGCCGTC | 1340 | 0.1467721089180486 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCACAAATCTCGTATGCC | 1123 | 0.12300378978728997 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGTATG | 25 | 0.0021070456 | 35.99943 | 45 |
| ATGCCGT | 140 | 0.0 | 35.356586 | 44 |
| TATGCCG | 145 | 0.0 | 34.137394 | 43 |
| TGCCGTC | 145 | 0.0 | 34.137394 | 45 |
| TCGTCGG | 45 | 0.0012264748 | 24.999605 | 26 |
| GCGGCCC | 45 | 0.0012264748 | 24.999605 | 33 |
| ATCGGAA | 215 | 0.0 | 23.022892 | 27 |
| AGATCGG | 225 | 0.0 | 21.999651 | 25 |
| GATCGGA | 230 | 0.0 | 21.521399 | 26 |
| CCTTCGT | 95 | 5.5212695E-7 | 21.318954 | 1 |
| TCGGAAG | 235 | 0.0 | 21.063498 | 28 |
| ACACCCG | 65 | 4.2377625E-4 | 20.768902 | 12 |
| CGCCACC | 190 | 0.0 | 20.133467 | 5 |
| CTCGTAT | 265 | 0.0 | 19.527992 | 42 |
| CGTATGC | 270 | 0.0 | 19.166365 | 44 |
| TCTCGTA | 275 | 0.0 | 18.817884 | 41 |
| CCGCCAC | 120 | 2.4927976E-7 | 18.751757 | 4 |
| ATGCCGA | 550 | 0.0 | 18.4088 | 19 |
| TCGTATG | 285 | 0.0 | 18.157608 | 43 |
| CTTCGTT | 125 | 3.8273174E-7 | 18.001688 | 2 |