FastQCFastQC Report
Mon 6 Jun 2016
ERR1379129.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379129.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1280640
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACTGATCTCGTATGCCGTC34140.2665854572713643Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACTGATCTCGTATGCC27880.21770364817591203Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG5350.036.5849443
ATGCCGT5950.032.89570244
TGCCGTC6250.031.31671145
CGTATGC7950.024.62005441
TCGTATG8000.024.46618340
TCTCGTA7850.024.35764538
CTCGTAT7900.024.20631839
CGGAAGA6350.022.7111431
AGACCGA8650.022.62591625
ATCTCGT8850.021.60874437
GTATGCC9100.021.50873242
CGAGACT9150.021.3886929
GACCGAG9150.021.14284326
ACCGAGA9350.020.9311827
GAGACCG9400.020.82065424
AGCGGTT10850.020.3410974
GAGCGGT10750.020.3208243
GACTGAT9550.020.26044332
AATGCCG10900.020.22486518
GCGGTTC10800.020.2235855