Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379363.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 516277 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATGAGATCTCGTATGCC | 1166 | 0.22584775227252038 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 145 | 0.0 | 40.34335 | 41 |
| CGTATGC | 150 | 0.0 | 38.998573 | 44 |
| AGACCGC | 160 | 0.0 | 37.967358 | 28 |
| TCGTATG | 160 | 0.0 | 36.56116 | 43 |
| GACCGCA | 170 | 0.0 | 35.733986 | 29 |
| CTCGTAT | 165 | 0.0 | 35.453247 | 42 |
| ACCGCAT | 165 | 0.0 | 35.453247 | 30 |
| CGCATGA | 165 | 0.0 | 35.453247 | 32 |
| GAGACCG | 165 | 0.0 | 35.453247 | 27 |
| ATCTCGT | 170 | 0.0 | 34.410503 | 40 |
| GCGGTTC | 175 | 0.0 | 33.427345 | 8 |
| CGGTTCA | 180 | 0.0 | 32.49881 | 9 |
| GTATGCC | 175 | 0.0 | 32.141678 | 45 |
| AGCGGTT | 185 | 0.0 | 31.620464 | 7 |
| TGCCGAG | 200 | 0.0 | 31.498846 | 23 |
| GAGCGGT | 190 | 0.0 | 30.79133 | 6 |
| CCGAGAC | 190 | 0.0 | 30.788345 | 25 |
| CCGCATG | 190 | 0.0 | 30.788345 | 31 |
| AATGCCG | 195 | 0.0 | 29.998901 | 21 |
| CGGAAGA | 200 | 0.0 | 29.260265 | 1 |