FastQCFastQC Report
Mon 6 Jun 2016
ERR1379227.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379227.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences664150
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGA352.819685E-432.14172722
GACCGGG501.9804975E-631.49889429
TGCCGAG507.155638E-526.99905223
ACCGGGT450.001226260724.99912330
CGTATGC450.001226260724.99912344
GCGGTTC450.001226260724.9991238
AGACCGG450.001226260724.99912328
AATGCCG500.002264073422.49920821
GAGACCG500.002264073422.49920827
GAGCGGT602.4665744E-422.4992086
TCGTATG500.002264073422.49920843
CGGGTTA550.00393561620.45382732
CTCGTAT550.00393561620.45382742
CGGTTCA550.00393561620.4538279
AGCGGTT550.00393561620.4538277
AGAGCGG600.006506161318.7507535
ATCTCGT600.0065089918.74934240
TCTCGTA600.0065089918.74934241
AAGAGCG750.001107013618.0061454
CCGCCAC952.8097813E-416.5846064