Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378886.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1034344 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2092 | 0.2022537956424555 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGAAGATCTCGTATGCC | 1446 | 0.13979875167255768 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGAAGATCTCGTATGCCGTC | 1388 | 0.13419133286411486 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 185 | 0.0 | 31.618698 | 43 |
| AGATCGG | 360 | 0.0 | 28.744564 | 25 |
| GATCGGA | 350 | 0.0 | 28.280365 | 26 |
| ATCGGAA | 365 | 0.0 | 27.734482 | 27 |
| TCGGAAG | 415 | 0.0 | 26.019175 | 28 |
| TGCCGTC | 225 | 0.0 | 25.997599 | 45 |
| ATGCCGT | 230 | 0.0 | 25.432432 | 44 |
| CTCGTAT | 360 | 0.0 | 22.497921 | 42 |
| AATGCCG | 775 | 0.0 | 21.770075 | 18 |
| CGTATGC | 365 | 0.0 | 21.57335 | 44 |
| TCGTATG | 365 | 0.0 | 21.57335 | 43 |
| ATGCCGA | 785 | 0.0 | 21.49275 | 19 |
| TGCCGAG | 790 | 0.0 | 20.502453 | 20 |
| TCTCGTA | 385 | 0.0 | 20.452656 | 41 |
| AGACCGC | 415 | 0.0 | 20.056448 | 28 |
| CGCTGAA | 405 | 0.0 | 19.998154 | 32 |
| ATCTCGT | 400 | 0.0 | 19.68568 | 40 |
| CGAGATC | 530 | 0.0 | 19.10016 | 23 |
| CCGAGAT | 520 | 0.0 | 19.03486 | 22 |
| CGGTGAA | 95 | 1.31777E-5 | 18.943787 | 25 |