Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378607.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 701846 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3506 | 0.4995397850810577 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2604 | 0.37102156313493273 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 385 | 0.0 | 43.244152 | 13 |
| CGATGAC | 400 | 0.0 | 41.622498 | 18 |
| AAGCCGA | 405 | 0.0 | 41.10864 | 14 |
| GACGTCA | 415 | 0.0 | 40.11807 | 22 |
| CGTCATA | 420 | 0.0 | 39.640472 | 24 |
| GCCGATG | 425 | 0.0 | 39.17411 | 16 |
| CCGATGA | 435 | 0.0 | 38.79077 | 17 |
| TTCGGTA | 350 | 0.0 | 38.569107 | 22 |
| TTCCTCG | 300 | 0.0 | 38.2477 | 10 |
| ATTCGGT | 355 | 0.0 | 38.025883 | 21 |
| CGGTATT | 350 | 0.0 | 37.92629 | 24 |
| TCGGTAT | 350 | 0.0 | 37.92629 | 23 |
| AGCCGAT | 445 | 0.0 | 37.919067 | 15 |
| TGACGTC | 440 | 0.0 | 37.838634 | 21 |
| ATGACGT | 440 | 0.0 | 37.838634 | 20 |
| AATTCGG | 360 | 0.0 | 37.497746 | 20 |
| ACGTCAT | 450 | 0.0 | 37.49774 | 23 |
| GGCGGTC | 365 | 0.0 | 36.984077 | 35 |
| GATGACG | 455 | 0.0 | 36.591206 | 19 |
| AGGCGGT | 385 | 0.0 | 35.062824 | 34 |