FastQCFastQC Report
Mon 6 Jun 2016
ERR1379383.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379383.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences857505
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAGCATCTCGTATGCC12510.14588836216698445Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGAGAC2000.038.24915725
GCGGTTC2100.037.4991768
ACCGAGT2150.036.627130
CCGAGTA2150.036.627131
CTCGTAT2200.035.79466642
AGCGGTT2200.035.7946667
AGAGCGG2350.034.4733545
GACCGAG2350.034.46732729
GAGACCG2300.034.23837727
AGACCGA2300.034.23837728
GAGCGGT2400.033.7531936
CGGTTCA2350.033.50999
AAGAGCG2450.033.066284
ATCTCGT2400.032.81177540
CGTATGC2400.032.81177544
CGAGTAG2400.032.81177532
TCTCGTA2400.032.81177541
AATGCCG2350.032.55247521
TCGTATG2450.032.1421543
ATGCCGA2450.031.22380322