Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379163.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 374796 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCCTAAATCTCGTATGCC | 1552 | 0.4140919326780435 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGTTCA | 155 | 0.0 | 42.09677 | 9 |
| CGTATGC | 170 | 0.0 | 41.02941 | 44 |
| CTCGTAT | 170 | 0.0 | 41.02941 | 42 |
| GACCGTC | 165 | 0.0 | 40.909092 | 29 |
| CGTCCTA | 165 | 0.0 | 40.909092 | 32 |
| GCGGTTC | 160 | 0.0 | 40.78125 | 8 |
| TCGTATG | 175 | 0.0 | 39.857143 | 43 |
| AGAGCGG | 175 | 0.0 | 39.857143 | 5 |
| CGGAAGA | 185 | 0.0 | 38.91892 | 1 |
| GAGACCG | 180 | 0.0 | 38.75 | 27 |
| TCTCGTA | 180 | 0.0 | 38.75 | 41 |
| AATCTCG | 190 | 0.0 | 37.894737 | 39 |
| AAGAGCG | 180 | 0.0 | 37.5 | 4 |
| CCGAGAC | 180 | 0.0 | 37.5 | 25 |
| ACCGTCC | 180 | 0.0 | 37.5 | 30 |
| AGCGGTT | 175 | 0.0 | 37.285713 | 7 |
| ATCTCGT | 190 | 0.0 | 36.71053 | 40 |
| CCGTCCT | 185 | 0.0 | 36.486485 | 31 |
| AATGCCG | 185 | 0.0 | 36.486485 | 21 |
| GAGCGGT | 185 | 0.0 | 36.486485 | 6 |