Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379180.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 596368 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCAGTATCTCGTATGCC | 1154 | 0.19350468167306092 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGACCGT | 145 | 0.0 | 41.895695 | 28 |
| AGAGCGG | 150 | 0.0 | 40.502567 | 5 |
| TCTCGTA | 150 | 0.0 | 40.49917 | 41 |
| GAGCGGT | 155 | 0.0 | 39.196033 | 6 |
| ATCTCGT | 155 | 0.0 | 39.192745 | 40 |
| CTCGTAT | 155 | 0.0 | 39.192745 | 42 |
| GACCGTT | 155 | 0.0 | 39.192745 | 29 |
| GAGACCG | 155 | 0.0 | 39.192745 | 27 |
| ATGCCGA | 155 | 0.0 | 39.192745 | 22 |
| TGCCGAG | 155 | 0.0 | 39.192745 | 23 |
| CGTATGC | 160 | 0.0 | 37.96797 | 44 |
| AATGCCG | 160 | 0.0 | 37.96797 | 21 |
| GCGGTTC | 165 | 0.0 | 36.81743 | 8 |
| TATCTCG | 165 | 0.0 | 36.81743 | 39 |
| CGGAAGA | 175 | 0.0 | 36.008316 | 1 |
| CGTTCAG | 170 | 0.0 | 35.734562 | 32 |
| AGCGGTT | 170 | 0.0 | 35.734562 | 7 |
| CGGTTCA | 175 | 0.0 | 34.713573 | 9 |
| ACCGTTC | 175 | 0.0 | 34.713573 | 30 |
| GTATGCC | 185 | 0.0 | 34.053356 | 45 |