FastQCFastQC Report
Mon 6 Jun 2016
ERR1379188.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379188.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527446
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACCATTATCTCGTATGCC11850.22466754890548035Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATCTCG1800.041.24991239
ACCGACC1750.041.14277330
CGACCAT1750.041.14277332
TCGTATG1750.041.14277343
TCTCGTA1850.040.1350541
GACCGAC1800.039.99991629
ATCTCGT1900.039.07886540
CTCGTAT1900.039.07886542
GCGGTTC1900.039.0788658
CGGTTCA1900.039.0788659
AGCGGTT1900.039.0788657
AGACCGA1850.038.9188428
CCGACCA1850.038.9188431
GAGCGGT1950.038.0768436
AGAGCGG1950.038.0768435
CGGCTAA301.1390987E-437.4999217
CGTATGC1950.036.92344
GAGACCG1950.036.92327
CCGAGAC1900.036.7104525
ATGCCGA1900.036.7104522