Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379111.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1044270 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTAGATCTCGTATGCC | 4025 | 0.3854367165579783 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTAGATCTCGTATGCCGTC | 3381 | 0.32376684190870175 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 470 | 0.0 | 40.207672 | 43 |
| TGCCGTC | 540 | 0.0 | 35.41218 | 45 |
| ATGCCGT | 535 | 0.0 | 34.902122 | 44 |
| CGGAAGA | 720 | 0.0 | 24.415173 | 1 |
| CTCGTAT | 865 | 0.0 | 21.846945 | 39 |
| CGCAGTA | 860 | 0.0 | 21.450771 | 29 |
| TCTCGTA | 890 | 0.0 | 21.231232 | 38 |
| TCGTATG | 885 | 0.0 | 21.099024 | 40 |
| GTATGCC | 905 | 0.0 | 20.632746 | 42 |
| CGTATGC | 910 | 0.0 | 20.519379 | 41 |
| CCGCAGT | 910 | 0.0 | 20.518396 | 28 |
| ACCGCAG | 910 | 0.0 | 20.517416 | 27 |
| AGACCGC | 935 | 0.0 | 19.96882 | 25 |
| GACCGCA | 940 | 0.0 | 19.862602 | 26 |
| ATCTCGT | 945 | 0.0 | 19.759401 | 37 |
| GAAGAGC | 975 | 0.0 | 19.633583 | 3 |
| GAGACCG | 970 | 0.0 | 19.248297 | 24 |
| AATGCCG | 1170 | 0.0 | 19.226492 | 18 |
| CCGAGAC | 995 | 0.0 | 18.990751 | 22 |
| GTAGATC | 1005 | 0.0 | 18.581516 | 33 |