FastQCFastQC Report
Mon 6 Jun 2016
ERR1390594.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390594.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences576734
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCTT207.0343E-444.9948833
GACCGTA301.139979E-437.49573529
TATCTCG301.139979E-437.49573539
AGACCGT401.5604382E-533.74616228
CGTACAC352.8205264E-432.13920632
ACCGTAC352.8205264E-432.13920630
AGAGCGG406.147749E-428.1364365
AGCGGTT450.001226006524.9993237
ATCTCGT450.001226626624.99715840
CGTATGC450.001226626624.99715844
CCGTACA450.001226626624.99715831
GAGACCG551.3681033E-424.54266527
TCTCGTA500.002264747222.49744241
TCGTATG500.002264747222.49744243
GCGGTTC550.0039348120.4539958
ACGCCCA706.974889E-419.28686712
CGGTTCA600.00650766618.7494959
CTCGTAT600.006510924518.74786842
CGCCACC1002.0366226E-518.0073225
CGTGAGC1104.567183E-516.3901981