Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378628.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 728269 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3716 | 0.5102510198841362 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2903 | 0.39861644529699874 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCCGATG | 375 | 0.0 | 43.196373 | 16 |
| CGTCATA | 370 | 0.0 | 43.172054 | 24 |
| AAGCCGA | 380 | 0.0 | 42.628002 | 14 |
| TAAGCCG | 380 | 0.0 | 42.628002 | 13 |
| CCGATGA | 390 | 0.0 | 42.11185 | 17 |
| CGATGAC | 400 | 0.0 | 40.4966 | 18 |
| TCGGTAT | 380 | 0.0 | 40.259777 | 23 |
| GCGGTCT | 370 | 0.0 | 40.131767 | 36 |
| TGACGTC | 400 | 0.0 | 39.93415 | 21 |
| ATGACGT | 400 | 0.0 | 39.93415 | 20 |
| ACGTCAT | 400 | 0.0 | 39.93415 | 23 |
| AGCCGAT | 410 | 0.0 | 39.50888 | 15 |
| GACGTCA | 405 | 0.0 | 39.44113 | 22 |
| CGGTATT | 395 | 0.0 | 38.730927 | 24 |
| TTCGGTA | 390 | 0.0 | 38.650604 | 22 |
| GGCGGTC | 385 | 0.0 | 38.56819 | 35 |
| CTCGGGG | 335 | 0.0 | 38.280373 | 13 |
| GATGACG | 425 | 0.0 | 38.11445 | 19 |
| AGGCGGT | 390 | 0.0 | 38.073727 | 34 |
| ATTCGGT | 400 | 0.0 | 37.684338 | 21 |