FastQCFastQC Report
Mon 6 Jun 2016
ERR1378945.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378945.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1218909
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGAGAAATCTCGTATGCC104990.8613440379880697Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC52880.4338305812821137Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCGAG14650.036.39861731
CGCGAGA14650.036.24503732
ACCGCGA14750.036.1518530
GACCGCG14850.035.90840529
CGTATGC14800.035.87769344
GCGAGAA14900.035.48589733
CTCGTAT15000.035.39932342
TCTCGTA15000.035.39932341
AGACCGC15050.035.28171528
ATCTCGT15100.035.0158940
TCGTATG15200.034.9335443
GAGACCG15500.034.25741227
CGAGAAA15500.033.96709434
AATCTCG15800.033.4645539
GTATGCC15950.033.29089745
AGATCGG8050.033.2602317
GATCGGA8350.032.06525418
ATCGGAA8550.031.31519119
TCGGAAG8750.030.8565520
CGAGACC17750.030.42195326