FastQCFastQC Report
Mon 6 Jun 2016
ERR1378955.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378955.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences967717
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT57700.596248696674751Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGATAATCTCGTATGCCGTC28910.29874436431312046Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGATAATCTCGTATGCC13110.13547349070027703Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3950.037.605343
TCGGAAG8450.035.67740228
ATCGGAA8500.034.67348527
TGCCGTC4400.033.75930445
GATCGGA8800.033.49143626
AGATCGG8900.032.8623425
ATGCCGT4600.032.78077344
CCGAGAT9700.031.54367422
AATGCCG15050.030.49571418
ATGCCGA15100.030.39473219
TGCCGAG15400.029.94871920
GACCGTA5000.029.69744326
CGGAAGA10100.029.62616229
GAGATCG10000.029.47246224
CGTAGAT5050.029.40340829
ACCGTAG5050.029.40340827
GCCGAGA15600.028.98788821
CGAGATC10450.028.63389823
CCGTAGA5200.028.55523128
CTCGTAT5150.028.39854839