Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379013.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 914290 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6830 | 0.7470277483074298 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGAGTCATCTCGTATGCCGTC | 4617 | 0.504982007896838 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGAGTCATCTCGTATGCC | 1589 | 0.1737960603309672 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 972 | 0.1063120016624922 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 565 | 0.0 | 39.831383 | 43 |
| TGCCGTC | 610 | 0.0 | 36.893005 | 45 |
| ATGCCGT | 615 | 0.0 | 36.227127 | 44 |
| GATCGGA | 930 | 0.0 | 36.04611 | 26 |
| ATCGGAA | 945 | 0.0 | 35.47395 | 27 |
| TCGGAAG | 995 | 0.0 | 34.595806 | 28 |
| AGATCGG | 970 | 0.0 | 34.55967 | 25 |
| AATGCCG | 1880 | 0.0 | 30.63636 | 18 |
| CCGAGAT | 1110 | 0.0 | 30.606173 | 22 |
| CGAGATC | 1105 | 0.0 | 30.541058 | 23 |
| ATGCCGA | 1940 | 0.0 | 29.572872 | 19 |
| GAGATCG | 1145 | 0.0 | 29.47412 | 24 |
| TGCCGAG | 1965 | 0.0 | 29.19663 | 20 |
| TCGTATG | 760 | 0.0 | 29.014498 | 40 |
| CTCGTAT | 770 | 0.0 | 28.929909 | 39 |
| GAATGCC | 2005 | 0.0 | 28.727934 | 17 |
| CGTATGC | 775 | 0.0 | 28.452927 | 41 |
| CGGAAGA | 1220 | 0.0 | 28.031015 | 29 |
| GCCGAGA | 2015 | 0.0 | 28.025524 | 21 |
| TCTCGTA | 790 | 0.0 | 27.912682 | 38 |