Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378939.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 879992 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTCCAATCTCGTATGCC | 9843 | 1.1185328957535978 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 6204 | 0.7050064091491741 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1398 | 0.15886508059164173 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATCTCGT | 1270 | 0.0 | 36.140636 | 40 |
| TCTCGTA | 1270 | 0.0 | 36.140636 | 41 |
| CCGGCTC | 1375 | 0.0 | 35.99891 | 31 |
| CGTATGC | 1305 | 0.0 | 35.6906 | 44 |
| CTCGTAT | 1290 | 0.0 | 35.58234 | 42 |
| GACCGGC | 1390 | 0.0 | 35.448566 | 29 |
| GTATGCC | 1315 | 0.0 | 35.41919 | 45 |
| CGGCTCC | 1405 | 0.0 | 35.230247 | 32 |
| AGACCGG | 1405 | 0.0 | 35.07011 | 28 |
| ACCGGCT | 1410 | 0.0 | 34.945747 | 30 |
| AATCTCG | 1315 | 0.0 | 34.903885 | 39 |
| TCGTATG | 1350 | 0.0 | 34.334244 | 43 |
| GAGACCG | 1425 | 0.0 | 34.26212 | 27 |
| CTCCAAT | 1500 | 0.0 | 32.849003 | 35 |
| CCAATCT | 1485 | 0.0 | 31.968727 | 37 |
| AGATCGG | 945 | 0.0 | 31.665709 | 17 |
| TCCAATC | 1500 | 0.0 | 31.64904 | 36 |
| CGAGACC | 1560 | 0.0 | 31.58558 | 26 |
| GCTCCAA | 1580 | 0.0 | 31.470564 | 34 |
| GGCTCCA | 1580 | 0.0 | 31.328163 | 33 |