Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379171.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 336978 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGACTATCTCGTATGCC | 1572 | 0.4664992966899917 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GAGACCG | 90 | 0.0 | 42.498737 | 27 |
| TCTCGTA | 100 | 0.0 | 40.4988 | 41 |
| TCGTATG | 100 | 0.0 | 40.4988 | 43 |
| CGTTGAC | 110 | 0.0 | 38.862484 | 32 |
| CCGTTGA | 110 | 0.0 | 38.862484 | 31 |
| CTCGTAT | 105 | 0.0 | 38.570282 | 42 |
| GACCGTT | 100 | 0.0 | 38.248863 | 29 |
| ATCTCGT | 110 | 0.0 | 36.81709 | 40 |
| CGTATGC | 110 | 0.0 | 36.81709 | 44 |
| AGACCGT | 105 | 0.0 | 36.42749 | 28 |
| CGGTTCA | 120 | 0.0 | 35.623943 | 9 |
| TATCTCG | 115 | 0.0 | 35.216347 | 39 |
| GTATGCC | 115 | 0.0 | 35.216347 | 45 |
| GCGGTTC | 130 | 0.0 | 32.888523 | 8 |
| ACCGTTG | 130 | 0.0 | 32.88364 | 30 |
| AGAGCGG | 135 | 0.0 | 31.670427 | 5 |
| GACTATC | 130 | 0.0 | 31.152922 | 36 |
| GAGCGGT | 140 | 0.0 | 30.539341 | 6 |
| GATCGGA | 45 | 3.484307E-5 | 29.99911 | 18 |
| TCGGAAG | 45 | 3.484307E-5 | 29.99911 | 20 |