Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378957.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1311746 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4165 | 0.31751573856524057 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGTAATCTCGTATGCCGTC | 2301 | 0.17541505748826372 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GATCGGA | 515 | 0.0 | 36.69729 | 26 |
| ATCGGAA | 515 | 0.0 | 36.69729 | 27 |
| AGATCGG | 540 | 0.0 | 35.414986 | 25 |
| TCGGAAG | 540 | 0.0 | 34.997005 | 28 |
| TATGCCG | 325 | 0.0 | 34.624302 | 43 |
| ATGCCGT | 350 | 0.0 | 33.437183 | 44 |
| AATGCCG | 945 | 0.0 | 31.902033 | 18 |
| CCGATAG | 370 | 0.0 | 31.010859 | 28 |
| ATGCCGA | 990 | 0.0 | 30.679192 | 19 |
| GACCGAT | 375 | 0.0 | 30.598547 | 26 |
| TGCCGAG | 1010 | 0.0 | 30.294437 | 20 |
| CGATAGT | 380 | 0.0 | 30.194784 | 29 |
| TGCCGTC | 375 | 0.0 | 30.007727 | 45 |
| CGGAAGA | 650 | 0.0 | 29.074436 | 29 |
| ACCGATA | 405 | 0.0 | 28.33199 | 27 |
| CTCGTAT | 410 | 0.0 | 27.440863 | 39 |
| GCCGAGA | 1145 | 0.0 | 26.723623 | 21 |
| AGACCGA | 430 | 0.0 | 26.68478 | 25 |
| TCTCGTA | 425 | 0.0 | 26.472359 | 38 |
| GAATGCC | 1160 | 0.0 | 26.183104 | 17 |