Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378773.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1103243 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATGTAATCTCGTATGCCGTC | 1350 | 0.12236651399555674 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 195 | 0.0 | 41.53524 | 43 |
| ATGCCGT | 205 | 0.0 | 38.411655 | 44 |
| TGCCGTC | 205 | 0.0 | 38.411655 | 45 |
| AGACCGA | 255 | 0.0 | 30.881355 | 25 |
| GACCGAA | 260 | 0.0 | 30.287485 | 26 |
| TCGTATG | 260 | 0.0 | 30.286114 | 40 |
| CTCGTAT | 270 | 0.0 | 29.165728 | 39 |
| TCTCGTA | 270 | 0.0 | 29.165728 | 38 |
| ATCTCGT | 290 | 0.0 | 27.930134 | 37 |
| ACCGAAT | 285 | 0.0 | 27.630688 | 27 |
| GAGACCG | 290 | 0.0 | 27.154297 | 24 |
| CGTATGC | 290 | 0.0 | 27.153067 | 41 |
| CGGTTCA | 400 | 0.0 | 27.008923 | 6 |
| CCGAATG | 295 | 0.0 | 26.694054 | 28 |
| CGAATGT | 305 | 0.0 | 26.55652 | 29 |
| GCGGTTC | 425 | 0.0 | 25.420164 | 5 |
| AGCGGTT | 440 | 0.0 | 25.0651 | 4 |
| CCGAGAC | 315 | 0.0 | 24.998062 | 22 |
| ATGCCGA | 405 | 0.0 | 24.998062 | 19 |
| AATCTCG | 335 | 0.0 | 24.849947 | 36 |