FastQCFastQC Report
Mon 6 Jun 2016
ERR1378627.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378627.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences862043
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA35940.4169165575267127No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA25330.29383685036593304No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATGAC3350.040.29632618
TTCGGTA3400.039.7037322
ATTCGGT3350.039.6247221
GCCGATG3500.038.5693416
CGTCATA3500.038.5693424
TTCCTCG3150.038.5693410
AGCCGAT3550.038.0261115
CCGATGA3550.038.0261117
ACGTCAT3600.037.49796723
CGGTATT3550.037.3923424
GACGTCA3650.036.984322
ATGACGT3650.036.984320
GATGACG3650.036.984319
TAAGCCG3650.036.984313
CTCGGGG3300.036.8161913
GCGGTCT3700.036.4845136
TGACGTC3700.036.4845121
GGCGGTC3700.036.4845135
TCGGTAT3700.036.4845123
TCCTCGG3400.036.3950911