Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378787.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1767228 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACCTATCTCGTATGCCGTC | 2075 | 0.1174155230677649 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 305 | 0.0 | 33.932396 | 43 |
| ATGCCGT | 335 | 0.0 | 31.565277 | 44 |
| TGCCGTC | 335 | 0.0 | 31.565277 | 45 |
| CTCGTAT | 445 | 0.0 | 23.257036 | 39 |
| GACCGTA | 445 | 0.0 | 23.257036 | 26 |
| TATCTCG | 465 | 0.0 | 23.224419 | 36 |
| AGACCGT | 455 | 0.0 | 22.745892 | 25 |
| TCTCGTA | 460 | 0.0 | 22.498655 | 38 |
| CGTAACC | 475 | 0.0 | 22.261827 | 29 |
| ACCGTAA | 475 | 0.0 | 22.261827 | 27 |
| ATCTCGT | 470 | 0.0 | 22.01996 | 37 |
| GATCGGA | 205 | 0.0 | 21.94991 | 26 |
| AATGCCG | 695 | 0.0 | 21.689352 | 18 |
| CGTATGC | 480 | 0.0 | 21.561213 | 41 |
| CCGTAAC | 505 | 0.0 | 20.939344 | 28 |
| TGCCGAG | 715 | 0.0 | 20.767988 | 20 |
| ATGCCGA | 730 | 0.0 | 20.64945 | 19 |
| TCGTATG | 515 | 0.0 | 20.532755 | 40 |
| GAGACCG | 505 | 0.0 | 20.493826 | 24 |
| ATCGGAA | 225 | 0.0 | 19.998806 | 27 |