Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379175.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 254824 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACCTATCTCGTATGCC | 1048 | 0.41126424512604776 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GAGACCG | 160 | 0.0 | 43.59166 | 27 |
| AGACCGT | 160 | 0.0 | 43.59166 | 28 |
| CGTAACC | 160 | 0.0 | 43.59166 | 32 |
| CTCGTAT | 165 | 0.0 | 42.270702 | 42 |
| GACCGTA | 165 | 0.0 | 42.270702 | 29 |
| TATCTCG | 165 | 0.0 | 42.270702 | 39 |
| ACCGTAA | 165 | 0.0 | 42.270702 | 30 |
| ATCTCGT | 170 | 0.0 | 41.027443 | 40 |
| CGTATGC | 170 | 0.0 | 41.027443 | 44 |
| CCGTAAC | 170 | 0.0 | 41.027443 | 31 |
| TCTCGTA | 170 | 0.0 | 41.027443 | 41 |
| GTATGCC | 175 | 0.0 | 39.85523 | 45 |
| GCGGTTC | 185 | 0.0 | 38.917053 | 8 |
| AATGCCG | 180 | 0.0 | 38.748142 | 21 |
| ATGCCGA | 180 | 0.0 | 38.748142 | 22 |
| TGCCGAG | 180 | 0.0 | 38.748142 | 23 |
| CCGAGAC | 175 | 0.0 | 38.569576 | 25 |
| AAGAGCG | 190 | 0.0 | 37.907795 | 4 |
| AGAGCGG | 190 | 0.0 | 37.907795 | 5 |
| GAGCGGT | 190 | 0.0 | 37.900356 | 6 |