FastQCFastQC Report
Mon 6 Jun 2016
ERR1378875.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378875.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences997026
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT38240.38354064989278114Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACGTTATCTCGTATGCCGTC26110.26187882763338166Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACGTTATCTCGTATGCC21470.21534042241626597Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3150.039.27958343
ATGCCGT3550.034.85371444
GATCGGA4750.034.57181526
ATCGGAA4900.033.51349627
TGCCGTC3800.033.1527245
TCGGAAG5250.031.7093428
AGATCGG5200.031.58161225
TGCCGAG11250.026.59584820
ATGCCGA11350.026.36152619
AATGCCG11400.026.24458918
CCGAGAT6450.025.80992522
CGAGATC6450.025.80992523
CGTACGT5350.023.54772829
CCGTACG5450.023.52843928
GACCGTA5450.023.52725826
GCCGAGA12600.023.38920821
GAATGCC13000.023.36056717
CGTATGC5300.023.34541341
ACCGTAC5450.023.11449827
TCGTATG5500.022.90551640