FastQCFastQC Report
Mon 6 Jun 2016
ERR1378935.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378935.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences705411
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTATATCTCGTATGCC117021.658891057837204Illumina Paired End PCR Primer 2 (97% over 37bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC62360.8840236401190228Illumina Paired End PCR Primer 2 (100% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT14900.21122437841201797Illumina Paired End PCR Primer 2 (96% over 30bp)
GGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTATATCTCGTATGCCG7580.1074550864673219Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT14750.037.22221842
TATCTCG14700.037.19575539
CGATCTA15050.036.92615532
ATCTCGT14850.036.82003840
TCTCGTA14850.036.82003841
CCGATCT15150.036.68241531
CGTATGC15100.036.50587544
TCGTATG15250.036.146843
GTATGCC15400.035.6486245
ACCGATC15600.035.6242730
GACCGAT15650.035.51045629
AGACCGA16000.034.87428728
CTATATC15850.034.78093336
GAGACCG16200.034.58262627
TGCCGTC1050.034.28501545
GATCTAT16350.034.12774333
CGAGACC17150.032.79816426
ATATCTC16750.032.7777738
TATATCT17050.032.06906537
TCTATAT17750.031.43597435