FastQCFastQC Report
Mon 6 Jun 2016
ERR1390611.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390611.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences263006
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCAACG301.1286695E-437.5498245
CCCGGCT250.002106169535.99300415
CGGCTAA300.00514501429.9941717
ACGAAGG300.00514501429.994179
CGTTTCC551.343324E-424.6014881
GTCAGGC500.002262557622.4956266
AACGAAG500.002262557622.4956268
CCAACGA500.002262557622.4956266
CAACGAA600.006504756418.7463557
CCACGCC600.006504756418.74635510
ACTAGAC1108.569953E-414.315419
GGCTAAT1150.001199225713.69299118
GCACTCC1250.002246816212.59755116
ATATCTT2552.737579E-812.3693533
TGCACTC1701.3725004E-411.9094515
GCTAATT1802.3352691E-411.24781319
TACTAAA1450.00681078310.8599599
TATCTTC2751.1208793E-59.8312264
AATATCT3104.479398E-69.449822
AAATATC3907.9505844E-57.51712041