FastQCFastQC Report
Mon 6 Jun 2016
ERR1378880.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378880.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1030059
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT39820.3865797978562393Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCATTAATCTCGTATGCCGTC28350.275226953019196Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCATTAATCTCGTATGCC19890.19309573529283275Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3550.036.75925443
ATCGGAA5950.035.16169427
GATCGGA6050.034.95234326
TCGGAAG6100.034.66921228
ATGCCGT3800.034.3408844
AGATCGG6200.034.10672425
TGCCGTC3900.033.4603545
ATGCCGA11800.029.74037219
AATGCCG11750.029.67547418
CCGAGAT7350.029.38243122
GAGATCG7350.029.07636324
TGCCGAG12300.028.3485220
CGAGATC7700.027.75470723
GAATGCC12850.026.96009417
GCCGAGA12800.026.88965621
CGGAAGA8300.025.47978429
CTCGTAT5200.025.09525939
TCTCGTA5300.024.61937538
TCGTATG5350.024.39165540
GGAATGC14600.023.88265816