Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378638.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 811374 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3336 | 0.4111544121453239 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2340 | 0.2883996775839502 | No Hit |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGATGATCTCGTATGCCGTC | 1189 | 0.1465415455757764 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCGGTCT | 350 | 0.0 | 41.14055 | 36 |
| TAAGCCG | 355 | 0.0 | 40.5611 | 13 |
| CGGTATT | 360 | 0.0 | 39.997753 | 24 |
| TCGGTAT | 365 | 0.0 | 39.44984 | 23 |
| GGCGGTC | 385 | 0.0 | 38.569263 | 35 |
| ATTCGGT | 375 | 0.0 | 38.397842 | 21 |
| CCGATGA | 380 | 0.0 | 37.89261 | 17 |
| AGGCGGT | 380 | 0.0 | 37.89261 | 34 |
| TTCGGTA | 380 | 0.0 | 37.89261 | 22 |
| CGTCATA | 380 | 0.0 | 37.89261 | 24 |
| AGATTCG | 90 | 0.0 | 37.497894 | 10 |
| TCGGGGA | 385 | 0.0 | 37.400497 | 14 |
| AAGCCGA | 395 | 0.0 | 37.02324 | 14 |
| CGATGAC | 390 | 0.0 | 36.921 | 18 |
| AATTCGG | 395 | 0.0 | 36.45365 | 20 |
| ACGTCAT | 395 | 0.0 | 36.45365 | 23 |
| TTCCTCG | 310 | 0.0 | 36.288284 | 10 |
| CTCGGGG | 305 | 0.0 | 36.14551 | 13 |
| GCCGATG | 405 | 0.0 | 36.10908 | 16 |
| GAATTCG | 405 | 0.0 | 36.10908 | 19 |