FastQCFastQC Report
Mon 6 Jun 2016
ERR1390747.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390747.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences857829
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTATC352.8237305E-432.13519732
CTATCCG300.005151072529.99459826
CTCGTAG300.00515254129.9928543
TCGTACC300.00515254129.9928535
GCGAGTG406.1713543E-428.1199369
CCGGTAT450.00122800624.99404331
CGTATGC551.370022E-424.53960644
GACCGGT500.002267283422.49463829
AGCGGTG654.198967E-420.7970123
CTCGTAT654.243844E-420.76428242
TTGCGTA550.003939842320.45086326
CTTCGTA1151.5971818E-719.5616937
ATCTCGT706.992698E-419.28111840
TCTCGTA706.992698E-419.28111841
ACCGGTA600.006518144618.74553130
ACTAGAC2800.018.47989319
TCGTATA1002.0488229E-517.996769
ATCTTCG1153.4029272E-617.6322485
TATCTCG800.001713097416.87097739
TCGTATG800.001713097416.87097743