Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379337.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1001328 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATAGAATCTCGTATGCC | 1357 | 0.13552002940095553 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 160 | 0.0 | 42.188717 | 44 |
| ACCGTAT | 165 | 0.0 | 40.90823 | 30 |
| CGTATAG | 170 | 0.0 | 39.705044 | 32 |
| CTCGTAT | 175 | 0.0 | 38.572544 | 42 |
| GACCGTA | 175 | 0.0 | 38.570614 | 29 |
| CCGTATA | 175 | 0.0 | 38.570614 | 31 |
| GACGATA | 25 | 0.0021071974 | 35.99924 | 18 |
| TCTCGTA | 190 | 0.0 | 35.52557 | 41 |
| TCGTATG | 205 | 0.0 | 32.92778 | 43 |
| GCGGTTC | 220 | 0.0 | 30.681171 | 8 |
| AGACCGT | 220 | 0.0 | 30.681171 | 28 |
| CGGAAGA | 230 | 0.0 | 30.331505 | 1 |
| AGCGGTT | 245 | 0.0 | 30.305483 | 7 |
| AGAGCGG | 225 | 0.0 | 30.002363 | 5 |
| GAGCGGT | 235 | 0.0 | 29.681707 | 6 |
| ATCTCGT | 235 | 0.0 | 29.680227 | 40 |
| CCGAGAC | 235 | 0.0 | 29.680227 | 25 |
| CGGTTCA | 250 | 0.0 | 28.799393 | 9 |
| ATGCCGA | 235 | 0.0 | 28.722801 | 22 |
| AATGCCG | 240 | 0.0 | 28.124407 | 21 |