FastQCFastQC Report
Mon 6 Jun 2016
ERR1390725.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390725.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences644856
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG700.038.560417
GATCGGA803.6379788E-1233.7403518
ATCGGAA803.6379788E-1233.7403519
TCGGAAG855.456968E-1231.75315720
ACTTCGG300.00515475929.98909234
AGCGGTT1053.6379788E-1227.84701527
AGAGCGG1058.54925E-1125.70493725
GAGCGGT1101.5279511E-1024.5365326
CCGAGAC1101.5279511E-1024.5365345
CGGTTCA1152.6557245E-1023.46972529
CGTATGC500.00226832722.49182144
GCGGTTC1204.5292836E-1022.4918228
AAGAGCG1257.548806E-1021.59214624
CCTTCGT1008.8467823E-720.2961441
GAGATCG1452.1827873E-1020.16664316
GAGCCGA908.267967E-619.9927340
CGGAAGA1403.094101E-919.27870421
ATGCCGA1454.782123E-918.6139211
CGGCATT750.001111636917.9948517
CGAGATC1651.2314558E-917.72220215