Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379084.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 757607 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATATGAATCTCGTATGCCGTC | 3783 | 0.4993354074077985 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATGAATCTCGTATGCC | 3361 | 0.4436337045460245 | Illumina Paired End PCR Primer 2 (97% over 37bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 870 | 0.11483526419370466 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 530 | 0.0 | 40.325104 | 43 |
| ATGCCGT | 590 | 0.0 | 36.224243 | 44 |
| TGCCGTC | 655 | 0.0 | 33.316406 | 45 |
| TCGTATG | 905 | 0.0 | 23.864393 | 40 |
| CGTATGC | 900 | 0.0 | 23.747002 | 41 |
| CGATATG | 915 | 0.0 | 23.60358 | 29 |
| ACCGATA | 915 | 0.0 | 23.602022 | 27 |
| CTCGTAT | 925 | 0.0 | 23.59162 | 39 |
| CCGATAT | 920 | 0.0 | 23.473751 | 28 |
| TCTCGTA | 920 | 0.0 | 23.473751 | 38 |
| GACCGAT | 955 | 0.0 | 23.084568 | 26 |
| GAGACCG | 940 | 0.0 | 22.974308 | 24 |
| AGACCGA | 945 | 0.0 | 22.85275 | 25 |
| GTATGCC | 950 | 0.0 | 22.733974 | 42 |
| AATCTCG | 965 | 0.0 | 22.61373 | 36 |
| CGGAAGA | 740 | 0.0 | 22.528387 | 1 |
| CTTCGTA | 70 | 2.7026763E-5 | 22.498648 | 7 |
| ATCTCGT | 965 | 0.0 | 22.380598 | 37 |
| AATGCCG | 1285 | 0.0 | 21.882954 | 18 |
| AGCGGTT | 1330 | 0.0 | 21.504963 | 4 |