Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379364.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 817441 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCC | 2305 | 0.2819775372167532 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 250 | 0.0 | 43.19865 | 44 |
| TCTCGTA | 255 | 0.0 | 42.351612 | 41 |
| CTCGTAT | 265 | 0.0 | 40.75344 | 42 |
| TCGTATG | 275 | 0.0 | 39.2715 | 43 |
| CGAGTGA | 285 | 0.0 | 37.89355 | 32 |
| ACCGAGT | 290 | 0.0 | 36.464375 | 30 |
| AGAGCGG | 315 | 0.0 | 36.436348 | 5 |
| GAGACCG | 310 | 0.0 | 34.83762 | 27 |
| AAGAGCG | 325 | 0.0 | 34.622772 | 4 |
| CATCTCG | 320 | 0.0 | 34.452045 | 39 |
| ATCTCGT | 315 | 0.0 | 34.28464 | 40 |
| CCGAGTG | 310 | 0.0 | 34.111835 | 31 |
| CGGTTCA | 340 | 0.0 | 33.748943 | 9 |
| GAGCGGT | 340 | 0.0 | 33.089226 | 6 |
| GCGGTTC | 340 | 0.0 | 33.0872 | 8 |
| AGACCGA | 325 | 0.0 | 32.53744 | 28 |
| GTATGCC | 335 | 0.0 | 32.237797 | 45 |
| AGCGGTT | 345 | 0.0 | 31.955524 | 7 |
| GATCGGA | 50 | 1.981176E-6 | 31.499016 | 18 |
| CGGAAGA | 360 | 0.0 | 31.258581 | 1 |