Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378825.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 992745 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAAGATCTCGTATGCC | 1138 | 0.11463165263990249 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAAGATCTCGTATGCCGTC | 1042 | 0.10496149565094762 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCCGACG | 25 | 0.002107792 | 35.99714 | 22 |
| TATGCCG | 160 | 0.0 | 33.74732 | 43 |
| TGCCGTC | 175 | 0.0 | 30.85469 | 45 |
| ATGCCGT | 190 | 0.0 | 28.418793 | 44 |
| GATCGGA | 90 | 1.1910743E-8 | 24.999273 | 26 |
| ATCGGAA | 100 | 3.6423444E-8 | 22.500479 | 27 |
| CGGAAGA | 260 | 0.0 | 21.640526 | 1 |
| ATGCCGA | 360 | 0.0 | 21.248312 | 19 |
| AGATCGG | 115 | 1.5952901E-7 | 19.564648 | 25 |
| TGCCGAG | 380 | 0.0 | 19.53792 | 20 |
| TCTCGTA | 290 | 0.0 | 19.395988 | 38 |
| TGCGGCA | 60 | 0.0065090866 | 18.750399 | 32 |
| GAGTGCG | 60 | 0.00651098 | 18.749454 | 41 |
| AATGCCG | 415 | 0.0 | 18.43227 | 18 |
| GCGGTTC | 440 | 0.0 | 18.41412 | 5 |
| AAGAGCG | 430 | 0.0 | 18.318956 | 1 |
| CGGTTCA | 430 | 0.0 | 18.318956 | 6 |
| AGAGCGG | 430 | 0.0 | 18.318956 | 2 |
| CCGTGCA | 285 | 0.0 | 18.158281 | 28 |
| TCGTATG | 310 | 0.0 | 18.144632 | 40 |