Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378838.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1254079 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3177 | 0.25333332270136094 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTACACATCTCGTATGCC | 2841 | 0.2265407522173643 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTACACATCTCGTATGCCGTC | 2461 | 0.19623963083665383 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 275 | 0.0 | 40.08526 | 43 |
| TGCCGTC | 345 | 0.0 | 31.299936 | 45 |
| ATGCCGT | 360 | 0.0 | 30.620687 | 44 |
| AGATCGG | 440 | 0.0 | 28.121038 | 25 |
| ATCGGAA | 445 | 0.0 | 26.79291 | 27 |
| GATCGGA | 465 | 0.0 | 26.608093 | 26 |
| TCGGAAG | 475 | 0.0 | 25.575344 | 28 |
| CCGTTAC | 570 | 0.0 | 22.498625 | 31 |
| CGTATGC | 570 | 0.0 | 22.49683 | 44 |
| CGTTACA | 575 | 0.0 | 22.302982 | 32 |
| TCTCGTA | 575 | 0.0 | 22.301207 | 41 |
| ACCGTTA | 580 | 0.0 | 22.108953 | 30 |
| ATGCCGA | 1065 | 0.0 | 21.968737 | 19 |
| AATGCCG | 1065 | 0.0 | 21.966984 | 18 |
| CTCGTAT | 590 | 0.0 | 21.734226 | 42 |
| TGCCGAG | 1080 | 0.0 | 21.663614 | 20 |
| TCGTATG | 595 | 0.0 | 21.551584 | 43 |
| GACCGTT | 600 | 0.0 | 21.371988 | 29 |
| CCGAGAT | 585 | 0.0 | 21.150866 | 22 |
| CGAGATC | 600 | 0.0 | 20.997042 | 23 |