Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378835.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1167257 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2896 | 0.2481030312947363 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCAATATCTCGTATGCC | 2344 | 0.20081267450098822 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCAATATCTCGTATGCCGTC | 2232 | 0.1912175296442857 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 315 | 0.0 | 39.280254 | 43 |
| ATCGGAA | 490 | 0.0 | 33.512875 | 27 |
| GATCGGA | 495 | 0.0 | 33.174366 | 26 |
| ATGCCGT | 380 | 0.0 | 33.153286 | 44 |
| TCGGAAG | 535 | 0.0 | 31.955437 | 28 |
| TGCCGTC | 390 | 0.0 | 31.726362 | 45 |
| AGATCGG | 525 | 0.0 | 30.851532 | 25 |
| AATGCCG | 1090 | 0.0 | 27.03521 | 18 |
| ATGCCGA | 1150 | 0.0 | 25.625774 | 19 |
| TGCCGAG | 1170 | 0.0 | 25.187729 | 20 |
| CCGAGAT | 715 | 0.0 | 23.911736 | 22 |
| GAATGCC | 1300 | 0.0 | 23.01406 | 17 |
| GAGATCG | 740 | 0.0 | 22.19191 | 24 |
| TATCTCG | 595 | 0.0 | 21.929724 | 36 |
| CGAGATC | 750 | 0.0 | 21.896017 | 23 |
| CGGAAGA | 815 | 0.0 | 21.529827 | 29 |
| GGAATGC | 1440 | 0.0 | 20.932798 | 16 |
| TCTCGTA | 595 | 0.0 | 20.793648 | 38 |
| GCGGTTC | 1445 | 0.0 | 20.728664 | 5 |
| GCCGAGA | 1390 | 0.0 | 20.715656 | 21 |