FastQCFastQC Report
Mon 6 Jun 2016
ERR1379334.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379334.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences214676
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAGCGC300.005138046629.9999985
GGCCGAG406.149688E-428.12510
CCTCCCC901.8567743E-417.51
TTCTGCT1150.001196211213.69565129
GTGCAGT1800.002937201910.06
CTGGAGT2350.00268662638.6170221