Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379089.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 785546 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGTATATCTCGTATGCC | 4354 | 0.5542641678526783 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGTATATCTCGTATGCCGTC | 3504 | 0.44605917412856794 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 470 | 0.0 | 35.897346 | 43 |
| ATGCCGT | 520 | 0.0 | 32.878292 | 44 |
| TGCCGTC | 550 | 0.0 | 30.675915 | 45 |
| CGGAAGA | 705 | 0.0 | 25.249706 | 1 |
| TCTCGTA | 800 | 0.0 | 20.808495 | 38 |
| TATCTCG | 820 | 0.0 | 20.576618 | 36 |
| CTCGTAT | 810 | 0.0 | 20.551601 | 39 |
| GAAGAGC | 880 | 0.0 | 20.476679 | 3 |
| CGTATGC | 815 | 0.0 | 20.425518 | 41 |
| TCGTATG | 815 | 0.0 | 20.425518 | 40 |
| CGCTGTA | 840 | 0.0 | 20.353226 | 29 |
| ATCTCGT | 845 | 0.0 | 19.967842 | 37 |
| ACCGCTG | 860 | 0.0 | 19.879896 | 27 |
| CCGCTGT | 850 | 0.0 | 19.849123 | 28 |
| AGACCGC | 890 | 0.0 | 19.462547 | 25 |
| GTATGCC | 860 | 0.0 | 19.35674 | 42 |
| GACCGCT | 885 | 0.0 | 19.318317 | 26 |
| GAGACCG | 905 | 0.0 | 18.891392 | 24 |
| GTATATC | 915 | 0.0 | 18.440248 | 33 |
| CTGTATA | 940 | 0.0 | 18.189148 | 34 |