Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379019.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1364166 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6151 | 0.45089820447071693 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATGAAATCTCGTATGCCGTC | 3814 | 0.2795847426193 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 535 | 0.0 | 37.854446 | 43 |
| ATGCCGT | 545 | 0.0 | 36.74698 | 44 |
| TGCCGTC | 550 | 0.0 | 36.414253 | 45 |
| TCGGAAG | 880 | 0.0 | 33.74736 | 28 |
| ATCGGAA | 855 | 0.0 | 33.681576 | 27 |
| GATCGGA | 865 | 0.0 | 33.552288 | 26 |
| GACCGTA | 655 | 0.0 | 30.913612 | 26 |
| CCGTATG | 650 | 0.0 | 30.805283 | 28 |
| AGATCGG | 935 | 0.0 | 30.79973 | 25 |
| AATGCCG | 1650 | 0.0 | 30.406713 | 18 |
| TAGCGCC | 30 | 0.005144026 | 30.004253 | 7 |
| CTCGTAT | 690 | 0.0 | 30.000952 | 39 |
| AGACCGT | 675 | 0.0 | 29.997654 | 25 |
| CGTATGA | 670 | 0.0 | 29.885723 | 29 |
| ATGCCGA | 1685 | 0.0 | 29.775118 | 19 |
| CGTATGC | 685 | 0.0 | 29.562983 | 41 |
| TCGTATG | 685 | 0.0 | 29.562983 | 40 |
| TGCCGAG | 1690 | 0.0 | 29.553904 | 20 |
| ACCGTAT | 695 | 0.0 | 28.810698 | 27 |
| GTATGCC | 705 | 0.0 | 28.724318 | 42 |