Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378622.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1097375 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3765 | 0.3430914682765691 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2668 | 0.24312564073356874 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGGTAT | 470 | 0.0 | 42.125103 | 23 |
| TAAGCCG | 445 | 0.0 | 41.965656 | 13 |
| CGTCATA | 445 | 0.0 | 41.965656 | 24 |
| GCGGTCT | 465 | 0.0 | 41.61227 | 36 |
| GGCGGTC | 470 | 0.0 | 41.169586 | 35 |
| CGGTATT | 490 | 0.0 | 40.866726 | 24 |
| AATTCGG | 485 | 0.0 | 40.82226 | 20 |
| TCGGGGA | 480 | 0.0 | 40.78063 | 14 |
| CCGATGA | 465 | 0.0 | 40.16068 | 17 |
| TTCGGTA | 495 | 0.0 | 39.997566 | 22 |
| AGGCGGT | 485 | 0.0 | 39.8963 | 34 |
| ATTCGGT | 505 | 0.0 | 39.205536 | 21 |
| TGACGTC | 485 | 0.0 | 38.9667 | 21 |
| AGCCGAT | 480 | 0.0 | 38.905655 | 15 |
| CGATGAC | 480 | 0.0 | 38.905655 | 18 |
| CGGGGAA | 505 | 0.0 | 38.761784 | 15 |
| AAGCCGA | 490 | 0.0 | 38.570843 | 14 |
| GAATTCG | 515 | 0.0 | 38.446022 | 19 |
| CGGTCTC | 525 | 0.0 | 38.142277 | 37 |
| TCCTCGG | 435 | 0.0 | 37.75633 | 11 |