FastQCFastQC Report
Mon 6 Jun 2016
ERR1379144.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379144.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1212657
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATTAGATCTCGTATGCC36010.2969512401280824Illumina Paired End PCR Primer 2 (97% over 34bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATTAGATCTCGTATGCCGTC33630.2773249154542463Illumina Paired End PCR Primer 2 (96% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3800.037.29699343
ATGCCGT4300.032.43695444
TGCCGTC5050.027.61958545
CGGAAGA8150.025.437941
CGAATTA8200.025.24112932
CTCGTAT8050.025.15147642
TCTCGTA8050.025.15147641
CGTATGC8400.024.63913244
TCGTATG8450.024.49333843
CCGAATT8600.024.06712231
GACCGAA8600.024.06414429
ACCGAAT8800.023.77285430
GTATGCC8850.023.13209545
AGACCGA8950.023.12308928
ATCTCGT9050.022.37230740
GAGACCG9300.022.25286527
TTAGATC9650.021.21528436
CCGAGAC10250.020.19040125
TAGATCT10350.019.997837
GAATTAG10950.019.72385833