FastQCFastQC Report
Mon 6 Jun 2016
ERR1379255.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379255.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences686075
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA501.9793533E-631.50147841
GCGGTTC602.4171277E-729.9992248
TCGTATG554.160198E-628.63770943
ATCTCGT554.162559E-628.63562240
CGTATGC654.866579E-727.69360744
CTCGTAT608.182271E-626.25123442
CGAAGCT608.186904E-626.24932132
CTTCGTA551.367658E-424.5448197
AGCGGTT651.5228941E-524.230147
ATCTTCG602.4641023E-422.5026975
GACCGAA702.7014828E-522.49941629
GAGCGGT702.7014828E-522.4994166
ATGCCGA855.028456E-621.17592222
AGAGCGG754.5949142E-521.0025185
CGGGATT908.245135E-619.99948314
CGGAAGA807.546134E-519.6912961
ACCGAAG807.55883E-519.68698930
CCGAAGC807.55883E-519.68698931
CGCCCGG951.3148623E-518.94687813
TCGTTGG1202.489869E-718.7522474