Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378996.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 685655 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 7508 | 1.0950113395220629 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGCGATCTCGTATGCCGTC | 4850 | 0.7073528232128402 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGCGATCTCGTATGCC | 1736 | 0.2531885569273177 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1160 | 0.16918129379935973 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 550 | 0.0 | 38.874912 | 44 |
| TGCCGTC | 555 | 0.0 | 38.119164 | 45 |
| TATGCCG | 570 | 0.0 | 37.116028 | 43 |
| ATCGGAA | 920 | 0.0 | 36.4375 | 27 |
| ACGGGTG | 25 | 0.0021072882 | 35.997314 | 31 |
| AGATCGG | 945 | 0.0 | 35.711624 | 25 |
| GATCGGA | 945 | 0.0 | 35.473545 | 26 |
| TCGGAAG | 945 | 0.0 | 35.473545 | 28 |
| CCGAGAT | 1055 | 0.0 | 32.414646 | 22 |
| CGAGATC | 1050 | 0.0 | 32.35473 | 23 |
| GAGATCG | 1045 | 0.0 | 32.294243 | 24 |
| ATGCCGA | 1735 | 0.0 | 32.15899 | 19 |
| TGCCGAG | 1760 | 0.0 | 31.702183 | 20 |
| AATGCCG | 1775 | 0.0 | 31.561026 | 18 |
| CCGATAG | 695 | 0.0 | 30.753103 | 28 |
| GAATGCC | 1820 | 0.0 | 30.657055 | 17 |
| TAGCGAT | 700 | 0.0 | 30.53344 | 32 |
| GCCGAGA | 1825 | 0.0 | 30.449787 | 21 |
| ACCGATA | 715 | 0.0 | 30.207537 | 27 |
| CTCGTAT | 710 | 0.0 | 30.10778 | 39 |