Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378799.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 989459 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGACCATTATCTCGTATGCCGTC | 1446 | 0.1461404666590531 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACCATTATCTCGTATGCC | 1236 | 0.12491674743470926 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 180 | 0.0 | 36.246784 | 43 |
| ATGCCGT | 215 | 0.0 | 30.346146 | 44 |
| TGCCGTC | 225 | 0.0 | 28.997429 | 45 |
| CGTAGCA | 40 | 6.168732E-4 | 28.122505 | 10 |
| CGGAAGA | 335 | 0.0 | 20.16173 | 1 |
| CGTATGC | 340 | 0.0 | 19.85118 | 44 |
| ACCGACC | 345 | 0.0 | 19.56348 | 30 |
| CGACCAT | 345 | 0.0 | 19.56348 | 32 |
| CCGACCA | 345 | 0.0 | 19.56348 | 31 |
| GACCGAC | 350 | 0.0 | 19.284002 | 29 |
| TCGTATG | 350 | 0.0 | 19.284002 | 43 |
| CTCGTAT | 365 | 0.0 | 19.107895 | 42 |
| TCTCGTA | 355 | 0.0 | 19.012398 | 41 |
| AGACCGA | 355 | 0.0 | 19.012398 | 28 |
| ATCTCGT | 360 | 0.0 | 18.748337 | 37 |
| CGGCTAA | 120 | 2.498109E-7 | 18.748337 | 17 |
| GTATGCC | 370 | 0.0 | 17.633572 | 42 |
| TATCTCG | 390 | 0.0 | 17.306156 | 39 |
| GAGACCG | 395 | 0.0 | 17.087091 | 24 |
| GCGGTTC | 505 | 0.0 | 16.938606 | 5 |