FastQCFastQC Report
Mon 6 Jun 2016
ERR1390677.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390677.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1007268
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC850.037.046644
TCGTATG850.037.046643
CCGTTGT1000.033.74054331
TCTCGTA1000.031.4896141
GATCGGA1750.029.56754718
CTCGTAT1100.028.62691742
ACCGTTG1150.027.38362930
AGATCGG1900.027.23326717
GACCGTT1200.026.24264529
TCGGAAG2000.025.86646720
ATCTCGT1251.8189894E-1225.1941940
CGTTGTA1350.024.99299432
ACGCCCG450.001228810224.99175512
ATCGGAA2150.024.06660719
AGAGCGG2350.022.01510625
CATCTCG1459.094947E-1221.7191339
GAGACCG1459.094947E-1221.7191327
AGACCGT1459.094947E-1221.7191328
GCGGTTC2450.021.11757928
CCGAGAC2450.021.11548245