Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378780.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 853762 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTTATATCTCGTATGCCGTC | 943 | 0.1104523274636257 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTTATATCTCGTATGCC | 928 | 0.10869539754638881 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 135 | 0.0 | 39.997032 | 43 |
| ATGCCGT | 155 | 0.0 | 36.287632 | 44 |
| TGCCGTC | 180 | 0.0 | 29.997774 | 45 |
| CTCGTAT | 225 | 0.0 | 23.99822 | 39 |
| ACCGGCT | 235 | 0.0 | 22.977018 | 27 |
| TCGTATG | 240 | 0.0 | 22.498331 | 40 |
| CGGCTTA | 240 | 0.0 | 22.498331 | 29 |
| CGTATGC | 245 | 0.0 | 22.039183 | 41 |
| TCTCGTA | 245 | 0.0 | 22.039183 | 38 |
| CCGGCTT | 255 | 0.0 | 21.1749 | 28 |
| TATCTCG | 255 | 0.0 | 21.1749 | 36 |
| GACCGGC | 260 | 0.0 | 20.767689 | 26 |
| GAGACCG | 260 | 0.0 | 20.767689 | 24 |
| ATCTCGT | 270 | 0.0 | 19.998516 | 37 |
| CCGGCTA | 80 | 7.564402E-5 | 19.686039 | 16 |
| CGGCTAA | 80 | 7.564402E-5 | 19.686039 | 17 |
| AGACCGG | 275 | 0.0 | 19.634907 | 25 |
| TGCCGAG | 395 | 0.0 | 19.365652 | 20 |
| AATGCCG | 410 | 0.0 | 19.205893 | 18 |
| ATGCCGA | 405 | 0.0 | 18.887487 | 19 |