Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378873.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 898700 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3875 | 0.43117836875486815 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTCTAATCTCGTATGCC | 2843 | 0.3163458328697007 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTCTAATCTCGTATGCCGTC | 2804 | 0.31200623122287746 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 285 | 0.0 | 38.680813 | 43 |
| ATCGGAA | 605 | 0.0 | 35.323544 | 27 |
| ATGCCGT | 335 | 0.0 | 34.250725 | 44 |
| GATCGGA | 635 | 0.0 | 33.65472 | 26 |
| AGATCGG | 640 | 0.0 | 33.042137 | 25 |
| TCGGAAG | 695 | 0.0 | 31.722069 | 28 |
| CCGAGAT | 700 | 0.0 | 30.531334 | 22 |
| TGCCGTC | 375 | 0.0 | 29.997366 | 45 |
| CGAGATC | 755 | 0.0 | 28.307198 | 23 |
| GAGATCG | 780 | 0.0 | 27.399916 | 24 |
| AATGCCG | 1250 | 0.0 | 26.274769 | 18 |
| ATGCCGA | 1300 | 0.0 | 25.265606 | 19 |
| TGCCGAG | 1325 | 0.0 | 24.958683 | 20 |
| GAATGCC | 1360 | 0.0 | 24.149603 | 17 |
| GCCGAGA | 1375 | 0.0 | 23.396645 | 21 |
| CGGAAGA | 980 | 0.0 | 22.49677 | 29 |
| GGAATGC | 1455 | 0.0 | 22.418219 | 16 |
| CTCGTAT | 570 | 0.0 | 22.103323 | 42 |
| TCGTATG | 570 | 0.0 | 22.103323 | 43 |
| CGTATGC | 590 | 0.0 | 21.73538 | 44 |