Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378586.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1138252 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3694 | 0.3245327045329154 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2998 | 0.26338631515692484 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 385 | 0.0 | 41.490063 | 13 |
| CGATGAC | 395 | 0.0 | 40.439682 | 18 |
| CCGATGA | 400 | 0.0 | 39.93419 | 17 |
| CGTCATA | 405 | 0.0 | 39.441174 | 24 |
| TTCGGTA | 400 | 0.0 | 39.371735 | 22 |
| TCGGTAT | 400 | 0.0 | 39.371735 | 23 |
| TGACGTC | 410 | 0.0 | 38.96018 | 21 |
| ATGACGT | 410 | 0.0 | 38.96018 | 20 |
| TCGGGGA | 415 | 0.0 | 38.49078 | 14 |
| GCCGATG | 415 | 0.0 | 38.49078 | 16 |
| GATGACG | 425 | 0.0 | 38.114487 | 19 |
| AGCCGAT | 420 | 0.0 | 38.03256 | 15 |
| ACGTCAT | 420 | 0.0 | 38.03256 | 23 |
| GGCGGTC | 430 | 0.0 | 37.67129 | 35 |
| GACGTCA | 425 | 0.0 | 37.585117 | 22 |
| AGGCGGT | 440 | 0.0 | 37.326447 | 34 |
| GAATTCG | 430 | 0.0 | 37.148083 | 19 |
| GCGGTCT | 435 | 0.0 | 36.72109 | 36 |
| CGGTATT | 430 | 0.0 | 36.62487 | 24 |
| TTCCTCG | 390 | 0.0 | 36.343136 | 10 |