FastQCFastQC Report
Mon 6 Jun 2016
ERR1379214.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379214.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449061
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAAGATCTCGTATGCC9520.21199792455813354Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT1100.044.99888642
CGTATGC1200.041.24897844
CGTGCAA1200.041.24897832
GACCGTG1200.041.24897829
CCGTGCA1200.041.24897831
GAGACCG1200.041.24897827
TCTCGTA1200.041.24897841
AGACCGT1250.039.5990228
TCGTATG1250.039.5990243
ATCTCGT1300.038.0759840
CGGTTCA1300.038.075989
CCGAGAC1350.036.6657625
AGCGGTT1400.035.3562667
GAGCGGT1500.034.4991466
GCGGTTC1450.034.137098
ACCGTGC1450.034.1370930
AGAGCGG1500.033.0028575
ATGCCGA1500.031.4992222
CGGAAGA1600.030.9470731
AATGCCG1550.030.48311821