Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378975.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 989329 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 7561 | 0.7642553690430585 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACTAATCTCGTATGCCGTC | 4255 | 0.43008948489329635 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACTAATCTCGTATGCC | 1320 | 0.13342376499627526 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 495 | 0.0 | 37.73431 | 43 |
| GATCGGA | 900 | 0.0 | 37.49562 | 26 |
| TCGGAAG | 955 | 0.0 | 36.985207 | 28 |
| AGATCGG | 920 | 0.0 | 36.6805 | 25 |
| ATCGGAA | 930 | 0.0 | 36.286083 | 27 |
| ATGCCGT | 525 | 0.0 | 36.006714 | 44 |
| TGCCGTC | 545 | 0.0 | 34.685368 | 45 |
| AATGCCG | 1660 | 0.0 | 32.797375 | 18 |
| CGGAAGA | 1065 | 0.0 | 32.742653 | 29 |
| ATGCCGA | 1685 | 0.0 | 32.577793 | 19 |
| GAGATCG | 1050 | 0.0 | 32.353367 | 24 |
| TGCCGAG | 1670 | 0.0 | 32.33155 | 20 |
| CGAGATC | 1070 | 0.0 | 31.748627 | 23 |
| CCGAGAT | 1090 | 0.0 | 31.166084 | 22 |
| GACCGTC | 615 | 0.0 | 31.09393 | 26 |
| CGTATGC | 610 | 0.0 | 30.618916 | 41 |
| CTCGTAT | 620 | 0.0 | 30.125065 | 39 |
| ACCGTCA | 635 | 0.0 | 30.114592 | 27 |
| GTCGGAA | 45 | 3.493142E-5 | 29.996494 | 27 |
| TCTCGTA | 625 | 0.0 | 29.884062 | 38 |