Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378959.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 831943 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4972 | 0.5976370977338592 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTACATATCTCGTATGCCGTC | 2442 | 0.2935297249931786 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTACATATCTCGTATGCC | 1340 | 0.16106872706423397 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 255 | 0.0 | 37.94275 | 43 |
| AGATCGG | 770 | 0.0 | 37.39965 | 25 |
| GATCGGA | 775 | 0.0 | 37.15836 | 26 |
| ATCGGAA | 775 | 0.0 | 36.86806 | 27 |
| TCGGAAG | 785 | 0.0 | 36.398403 | 28 |
| TGCCGTC | 305 | 0.0 | 31.724531 | 45 |
| ATGCCGT | 310 | 0.0 | 31.21097 | 44 |
| GAGATCG | 925 | 0.0 | 31.132683 | 24 |
| CGGAAGA | 930 | 0.0 | 30.9653 | 29 |
| AATGCCG | 1260 | 0.0 | 30.890423 | 18 |
| TGCCGAG | 1280 | 0.0 | 30.583527 | 20 |
| ATGCCGA | 1290 | 0.0 | 30.520851 | 19 |
| CCGAGAT | 955 | 0.0 | 30.390278 | 22 |
| CGTTAAC | 30 | 0.005146922 | 29.99944 | 39 |
| CGAGATC | 960 | 0.0 | 29.997635 | 23 |
| GAATGCC | 1410 | 0.0 | 27.76377 | 17 |
| GCCGAGA | 1410 | 0.0 | 27.604208 | 21 |
| GGAATGC | 1465 | 0.0 | 26.567871 | 16 |
| CTCGTAT | 380 | 0.0 | 25.46005 | 39 |
| ACCGCTA | 395 | 0.0 | 25.061316 | 27 |