Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379358.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 623854 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCC | 1965 | 0.3149775428225194 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 280 | 0.0 | 40.178497 | 44 |
| TCGTATG | 280 | 0.0 | 40.178497 | 43 |
| GCGGTTC | 275 | 0.0 | 40.090836 | 8 |
| CTCGTAT | 270 | 0.0 | 39.99993 | 42 |
| AGCGGTT | 290 | 0.0 | 38.793034 | 7 |
| TCTCGTA | 290 | 0.0 | 38.793034 | 41 |
| CGAGACA | 290 | 0.0 | 38.793034 | 32 |
| CGGAAGA | 305 | 0.0 | 38.363663 | 1 |
| GACCGAG | 305 | 0.0 | 38.360588 | 29 |
| CGGTTCA | 295 | 0.0 | 38.135525 | 9 |
| ACCGAGA | 295 | 0.0 | 38.135525 | 30 |
| GAGCGGT | 295 | 0.0 | 38.135525 | 6 |
| GAGACCG | 310 | 0.0 | 37.016064 | 27 |
| AGACCGA | 305 | 0.0 | 36.88518 | 28 |
| AATGCCG | 310 | 0.0 | 36.29026 | 21 |
| ATCTCGT | 300 | 0.0 | 35.999935 | 40 |
| AAGAGCG | 315 | 0.0 | 35.714222 | 4 |
| GTATGCC | 335 | 0.0 | 34.25367 | 45 |
| AGAGCGG | 330 | 0.0 | 34.090847 | 5 |
| ATGCCGA | 345 | 0.0 | 32.60864 | 22 |