FastQCFastQC Report
Mon 6 Jun 2016
ERR1378790.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378790.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences633322
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTCAATCTCGTATGCCGTC16610.26226785110891454Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTCAATCTCGTATGCC14370.2268987971363698Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1750.039.85441643
ATCCGTA250.002107103835.99753633
ATGCCGT2000.034.87261244
TGCCGTC2200.031.70237745
CGGAAGA3200.023.2143671
CGTGTTC3300.021.13491629
AGATCGG1401.364242E-1020.89142825
TCGGAAG1401.364242E-1020.89142828
CGTATGC3350.020.81947141
TCGTATG3400.020.51330240
AATGCCG4850.020.41097518
ATGCCGA4850.020.41097519
ATCGGAA1452.1827873E-1020.17103427
GACCGTG3600.019.99863226
AGACCGT3500.019.92720825
CTCGTAT3400.019.85158339
TGCCGAG5050.019.6026220
TCTCGTA3450.019.56387938
GATCGGA1503.43789E-1019.49866526
GAGACCG3600.019.37367424