FastQCFastQC Report
Mon 6 Jun 2016
ERR1378942.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378942.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1290312
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACAAACATCTCGTATGCC71780.5562995616564056Illumina Paired End PCR Primer 2 (97% over 34bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC35600.2759022623985517Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGACAA10300.037.35404631
CTCGTAT10050.036.9399842
TCTCGTA10200.036.39674441
TCGTATG10200.036.39674443
CGTATGC10350.036.3040344
GACCGAC10550.036.04234729
CGACAAA10700.035.53707532
AGACCGA10800.035.41636328
GAGACCG10900.035.09144227
ACCGACA10850.035.0457830
GTATGCC10800.034.79136745
ATCTCGT10700.034.6959640
CATCTCG10850.034.42366839
AGATCGG5700.031.18394517
CGAGACC12500.030.95973226
GATCGGA5850.030.38435618
ATCGGAA6000.029.62474419
TCGGAAG6150.028.9021920
GACAAAC13400.028.88034833
ACATCTC13700.027.2625438