FastQCFastQC Report
Mon 6 Jun 2016
ERR1390652.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390652.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences792299
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGCT352.8241205E-432.13406445
GTCGTTC300.00511513630.037293
CCGTGCC300.005153191729.99179610
CATCGTC300.005153191729.99179642
CGCACCC300.005153191729.99179611
GATCGGA1450.023.27390318
ATCGGAA1450.023.27243219
TCGGAAG1500.022.49384520
AGATCGG1401.364242E-1020.89109817
CGCCCGG550.00393739320.45282413
CCGAGAC1503.45608E-1019.49466545
CGGCTAA851.2046179E-418.52785317
CGTATAA851.206368E-418.52434510
CGGAAGA1608.1854523E-1018.2762521
AAAGCGC1153.4053264E-617.6305855
CCGGCTA901.8659537E-417.49852816
AAGCGCT1459.520227E-817.0901816
GCCACCG1205.108237E-616.8959756
ACCCGGC800.001711174116.8735814
GCGGTTC1752.6884663E-916.7128828