Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378869.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1256154 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3716 | 0.295823601246344 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAACCTTATCTCGTATGCCGTC | 2609 | 0.20769746384599339 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACCTTATCTCGTATGCC | 2146 | 0.17083892580049898 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 320 | 0.0 | 38.666534 | 43 |
| ATGCCGT | 365 | 0.0 | 34.515785 | 44 |
| GATCGGA | 505 | 0.0 | 33.40857 | 26 |
| TGCCGTC | 390 | 0.0 | 31.726389 | 45 |
| ATCGGAA | 555 | 0.0 | 30.398788 | 27 |
| TCGGAAG | 575 | 0.0 | 30.125078 | 28 |
| AGATCGG | 560 | 0.0 | 29.725672 | 25 |
| ATGCCGA | 1065 | 0.0 | 28.092478 | 19 |
| AATGCCG | 1065 | 0.0 | 27.881256 | 18 |
| TGCCGAG | 1095 | 0.0 | 27.117386 | 20 |
| CGTATGC | 490 | 0.0 | 25.251616 | 41 |
| CTCGTAT | 495 | 0.0 | 24.996552 | 39 |
| CCGAACC | 510 | 0.0 | 24.260391 | 28 |
| TCTCGTA | 510 | 0.0 | 24.259426 | 38 |
| CCGAGAT | 710 | 0.0 | 24.079266 | 22 |
| GAATGCC | 1285 | 0.0 | 23.808048 | 17 |
| TATCTCG | 520 | 0.0 | 23.796686 | 36 |
| TCGTATG | 525 | 0.0 | 23.568176 | 40 |
| GCCGAGA | 1255 | 0.0 | 23.480946 | 21 |
| ACCGAAC | 530 | 0.0 | 23.343977 | 27 |