Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379348.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 788652 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATCAATCTCGTATGCC | 1151 | 0.14594523313197708 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 135 | 0.0 | 36.66636 | 41 |
| CTCGTAT | 140 | 0.0 | 35.356842 | 42 |
| CGTATGC | 160 | 0.0 | 32.343475 | 44 |
| CCGAGAC | 160 | 0.0 | 32.343475 | 25 |
| TCGTATG | 155 | 0.0 | 31.935215 | 43 |
| ACCGTCA | 170 | 0.0 | 31.764437 | 30 |
| ATCTCGT | 165 | 0.0 | 31.363373 | 40 |
| CCGTCAT | 175 | 0.0 | 29.571178 | 31 |
| AATGCCG | 175 | 0.0 | 29.571178 | 21 |
| GAGACCG | 175 | 0.0 | 29.571178 | 27 |
| ATGCCGA | 175 | 0.0 | 29.571178 | 22 |
| GACCGTC | 180 | 0.0 | 28.749758 | 29 |
| CGGTTCA | 180 | 0.0 | 28.749758 | 9 |
| AGACCGT | 180 | 0.0 | 28.749758 | 28 |
| CGTCATC | 180 | 0.0 | 28.749758 | 32 |
| AAGAGCG | 185 | 0.0 | 27.974512 | 4 |
| GCGGTTC | 185 | 0.0 | 27.972738 | 8 |
| AGCGGTT | 185 | 0.0 | 27.972738 | 7 |
| GAGCGGT | 195 | 0.0 | 26.539919 | 6 |
| GTATGCC | 195 | 0.0 | 26.538237 | 45 |