Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378971.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1049455 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5483 | 0.5224616586704528 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTCTATCTCGTATGCCGTC | 2696 | 0.25689524562749233 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGTCTATCTCGTATGCC | 1262 | 0.12025289316835881 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 320 | 0.0 | 36.568657 | 43 |
| GATCGGA | 745 | 0.0 | 35.63509 | 26 |
| ATCGGAA | 765 | 0.0 | 34.40936 | 27 |
| ATGCCGT | 355 | 0.0 | 34.231113 | 44 |
| AGATCGG | 790 | 0.0 | 33.605247 | 25 |
| TCGGAAG | 820 | 0.0 | 33.1989 | 28 |
| TGCCGTC | 375 | 0.0 | 31.805353 | 45 |
| AATGCCG | 1275 | 0.0 | 30.880194 | 18 |
| CCGAGAT | 875 | 0.0 | 30.597862 | 22 |
| TGCCGAG | 1290 | 0.0 | 30.521124 | 20 |
| ATGCCGA | 1315 | 0.0 | 29.940874 | 19 |
| CGGAAGA | 915 | 0.0 | 29.75202 | 29 |
| GAGATCG | 915 | 0.0 | 29.014366 | 24 |
| CGAGATC | 920 | 0.0 | 28.856678 | 23 |
| GCCGAGA | 1385 | 0.0 | 27.6154 | 21 |
| TCTCGTA | 430 | 0.0 | 27.208696 | 38 |
| TCGTATG | 430 | 0.0 | 27.208696 | 40 |
| GAATGCC | 1470 | 0.0 | 26.936893 | 17 |
| GACCGTA | 430 | 0.0 | 26.684181 | 26 |
| CTCGTAT | 445 | 0.0 | 26.29155 | 39 |