FastQCFastQC Report
Mon 6 Jun 2016
ERR1379290.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379290.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences640099
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCTTCTATCTCGTATGCC12600.19684455060857775Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG1450.040.3432943
CGTATGC1500.038.9985144
CTCGTAT1500.037.49856642
TCTCGTA1600.035.15490741
TATCTCG1700.033.08955839
GTATGCC1950.029.99885645
ATCTCGT1950.028.84505340
AGAGCGG2150.028.2569435
AAGAGCG2150.027.2146424
CGGAAGA2250.027.0074061
GAGCGGT2200.026.591976
GAGACCG2250.025.99900427
CGGTTCA2350.025.8500759
AGCGGTT2300.025.4338117
AATGCCG2300.025.43381121
CCGAGAC2500.022.49914225
AGACCGC2700.021.6658428
TGCCGAG2650.021.22560323
GTTCAGC3300.020.45376411
ACCGCCT3000.020.24922630