Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390713.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 749028 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 883 | 0.11788611373673615 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGTATG | 70 | 2.1827873E-11 | 35.345604 | 43 |
| CGTATGC | 75 | 4.7293724E-11 | 32.98923 | 44 |
| CCGGTTC | 75 | 4.7293724E-11 | 32.98923 | 31 |
| CGGTTCT | 85 | 2.0372681E-10 | 29.108145 | 32 |
| GACCGGT | 85 | 2.0372681E-10 | 29.108145 | 29 |
| ATCTCGT | 80 | 3.4033292E-9 | 28.11582 | 40 |
| CTCGTAT | 80 | 3.4033292E-9 | 28.11582 | 42 |
| TCTCGTA | 80 | 3.4033292E-9 | 28.11582 | 41 |
| ACCGGTT | 90 | 3.965397E-10 | 27.491026 | 30 |
| AGATCGG | 135 | 0.0 | 26.657963 | 17 |
| AGACCGG | 95 | 7.4396667E-10 | 26.044128 | 28 |
| GATCGGA | 125 | 1.8189894E-12 | 25.191774 | 18 |
| GTCCGCC | 45 | 0.001227535 | 24.995178 | 7 |
| TAACACG | 65 | 1.5266847E-5 | 24.222862 | 25 |
| ACGCAGA | 50 | 0.0022681768 | 22.492657 | 31 |
| ATCGGAA | 145 | 9.094947E-12 | 21.717049 | 19 |
| GAGACCG | 115 | 6.7848305E-9 | 21.514715 | 27 |
| TCGGAAG | 155 | 2.3646862E-11 | 20.315948 | 20 |
| CGCTCCA | 100 | 9.063042E-7 | 20.246094 | 9 |
| CCGAGAT | 180 | 2.0736479E-10 | 17.49429 | 14 |