FastQCFastQC Report
Mon 6 Jun 2016
ERR1379269.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379269.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences621606
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGACTA302.164019E-644.999631
ATGCCGA504.8732545E-835.9996822
AGAGCGG458.6919863E-734.9996875
CGACTAA401.5595144E-533.74969532
AGTCCGG300.005145685729.99973320
TCGTATG453.4885063E-529.99973143
GACCGAC554.161182E-628.63610829
CTCGTAT406.1632565E-428.12474642
TCTCGTA406.1632565E-428.12474641
GAGCGGT654.8677066E-727.692066
ACGCCCG608.184206E-626.24976712
GCGGTTC608.184206E-626.2497678
AGCGGTT608.184206E-626.2497677
AAGAGCG709.2902155E-725.7161254
TGCCGAG801.052249E-725.31227323
ACCGACT551.3672985E-424.54523730
CCGAGAC551.3672985E-424.54523725
CGGAAGA651.5204983E-524.2344511
GAGACCG602.4658898E-422.499827
AATGCCG702.7006008E-522.49979821