Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378683.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1159636 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCATGATCTCGTATGCC | 1215 | 0.10477425674953174 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGCTTAG | 25 | 0.0021014134 | 36.019882 | 6 |
| GACCGTT | 125 | 0.0 | 32.396927 | 29 |
| AGACCGT | 145 | 0.0 | 29.47996 | 28 |
| CGTATGC | 140 | 0.0 | 28.927074 | 44 |
| TCTCGTA | 140 | 0.0 | 28.927074 | 41 |
| TCGTATG | 140 | 0.0 | 28.925827 | 43 |
| ACCGTTC | 145 | 0.0 | 27.928383 | 30 |
| CGTTCAT | 155 | 0.0 | 27.579218 | 32 |
| CCGTTCA | 155 | 0.0 | 27.579218 | 31 |
| CGGTTCA | 150 | 0.0 | 26.996275 | 9 |
| CTCGTAT | 155 | 0.0 | 26.12768 | 42 |
| GCGGTTC | 155 | 0.0 | 26.12543 | 8 |
| GAGACCG | 160 | 0.0 | 25.310099 | 27 |
| AGCGGTT | 165 | 0.0 | 24.542067 | 7 |
| GAGCGGT | 175 | 0.0 | 23.15564 | 6 |
| ATCTCGT | 175 | 0.0 | 23.14166 | 40 |
| AGAGCGG | 180 | 0.0 | 22.512424 | 5 |
| GATCGGA | 60 | 2.469833E-4 | 22.496897 | 18 |
| ATGCCGA | 190 | 0.0 | 22.496895 | 22 |
| CCGAGAC | 185 | 0.0 | 21.889814 | 25 |