FastQCFastQC Report
Mon 6 Jun 2016
ERR1390661.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390661.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1086605
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA501.9847776E-631.49330118
GCGGTTC702.7082247E-522.49417928
CGATCCC550.003942304320.44925330
GGGTGCG851.1906709E-418.5570663
AGATCGG851.2063297E-418.5254717
ATCGGAA851.2063297E-418.5254719
AGCGGTT1002.0510271E-517.99534427
GAGCGGT901.8692526E-417.49547426
CGGGATT1752.6975613E-916.7107314
AGTGGCG1652.3637767E-816.36015510
AAGAGCG1104.6474233E-516.35940424
ACCACGC1951.1295924E-814.996819
CCGAGAC1351.5852678E-514.99611945
ATCTTCG1251.3624105E-414.4221555
ACGCCCA1108.604643E-414.31447812
TCGGAAG1108.604643E-414.31447820
ACGGGAT1605.0366325E-614.05950713
CCTTCGT1453.05809E-513.987651
TTCGTTG2306.528353E-913.7160923
CGCCTCG1000.00756129613.49712937