Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378850.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 611100 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2778 | 0.45459008345606283 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAACCATCTCGTATGCCGTC | 2013 | 0.32940598919980363 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAACCATCTCGTATGCC | 1893 | 0.30976926853215514 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTACCG | 20 | 7.0337765E-4 | 44.99599 | 26 |
| TATGCCG | 270 | 0.0 | 39.996437 | 43 |
| GATCGGA | 465 | 0.0 | 32.900295 | 26 |
| ATCGGAA | 470 | 0.0 | 32.550293 | 27 |
| TGCCGTC | 340 | 0.0 | 32.42358 | 45 |
| ATGCCGT | 340 | 0.0 | 31.761873 | 44 |
| TCGGAAG | 490 | 0.0 | 31.683441 | 28 |
| AGATCGG | 525 | 0.0 | 29.568794 | 25 |
| CCGAGAT | 575 | 0.0 | 27.388865 | 22 |
| AATGCCG | 965 | 0.0 | 27.277363 | 18 |
| GAGATCG | 575 | 0.0 | 26.997595 | 24 |
| CGAGATC | 595 | 0.0 | 26.090113 | 23 |
| ATGCCGA | 1010 | 0.0 | 26.062035 | 19 |
| TGCCGAG | 1035 | 0.0 | 25.432518 | 20 |
| GAATGCC | 1075 | 0.0 | 24.48619 | 17 |
| GGAATGC | 1110 | 0.0 | 23.916788 | 16 |
| GCCGAGA | 1095 | 0.0 | 23.628033 | 21 |
| CTCGTAT | 465 | 0.0 | 23.22374 | 39 |
| CGTATGC | 470 | 0.0 | 22.976679 | 41 |
| TCTCGTA | 470 | 0.0 | 22.976679 | 38 |