Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378972.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 851661 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5581 | 0.6553076869787392 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTAGTATCTCGTATGCCGTC | 2744 | 0.32219392457797175 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTAGTATCTCGTATGCC | 1402 | 0.16461949061891998 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGCCGTC | 305 | 0.0 | 40.572765 | 45 |
| TATGCCG | 310 | 0.0 | 39.192577 | 43 |
| ATGCCGT | 310 | 0.0 | 39.192577 | 44 |
| GTCGGAA | 30 | 1.140234E-4 | 37.49687 | 27 |
| ATCGGAA | 785 | 0.0 | 35.825035 | 27 |
| GATCGGA | 790 | 0.0 | 35.598293 | 26 |
| AGATCGG | 800 | 0.0 | 35.43454 | 25 |
| TCGGAAG | 830 | 0.0 | 34.96696 | 28 |
| CGAGATC | 890 | 0.0 | 31.851273 | 23 |
| CCGAGAT | 885 | 0.0 | 31.777008 | 22 |
| GAGATCG | 945 | 0.0 | 30.23557 | 24 |
| CAAGTCG | 30 | 0.005148621 | 29.997494 | 17 |
| AATGCCG | 1405 | 0.0 | 29.783989 | 18 |
| ATGCCGA | 1440 | 0.0 | 28.903835 | 19 |
| TGCCGAG | 1480 | 0.0 | 27.970636 | 20 |
| CGGAAGA | 1040 | 0.0 | 27.906324 | 29 |
| GAATGCC | 1560 | 0.0 | 26.824682 | 17 |
| GCCGAGA | 1495 | 0.0 | 26.787062 | 21 |
| GGAATGC | 1655 | 0.0 | 25.692717 | 16 |
| CGTATGC | 520 | 0.0 | 23.79609 | 41 |