Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379207.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 412250 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGTTATCTCGTATGCC | 1029 | 0.24960582171012735 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GATCGGA | 20 | 7.028391E-4 | 44.99951 | 18 |
| CGATCGT | 140 | 0.0 | 40.17814 | 32 |
| CGTATGC | 135 | 0.0 | 39.99957 | 44 |
| TCGTATG | 135 | 0.0 | 39.99957 | 43 |
| CGGTTCA | 145 | 0.0 | 38.792683 | 9 |
| CTCGTAT | 140 | 0.0 | 38.571014 | 42 |
| CCGATCG | 140 | 0.0 | 38.571014 | 31 |
| GACCGAT | 140 | 0.0 | 38.571014 | 29 |
| GAGACCG | 140 | 0.0 | 38.571014 | 27 |
| AGAGCGG | 155 | 0.0 | 37.74153 | 5 |
| GCGGTTC | 150 | 0.0 | 37.499596 | 8 |
| ACCGATC | 145 | 0.0 | 37.240974 | 30 |
| ATCGTTA | 145 | 0.0 | 37.240974 | 34 |
| TATCTCG | 145 | 0.0 | 37.240974 | 39 |
| AGACCGA | 145 | 0.0 | 37.240974 | 28 |
| CGGAAGA | 155 | 0.0 | 36.294334 | 1 |
| ATCTCGT | 150 | 0.0 | 35.99961 | 40 |
| TCGTTAT | 150 | 0.0 | 35.99961 | 35 |
| TCTCGTA | 150 | 0.0 | 35.99961 | 41 |
| CCGAGAC | 150 | 0.0 | 35.99961 | 25 |