Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379093.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 873947 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATCAATCTCGTATGCC | 3251 | 0.3719905211643269 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATCAATCTCGTATGCCGTC | 3187 | 0.3646674226240264 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 290 | 0.0 | 41.11619 | 43 |
| ATGCCGT | 350 | 0.0 | 34.710487 | 44 |
| TGCCGTC | 370 | 0.0 | 32.834248 | 45 |
| TCTCGTA | 685 | 0.0 | 23.975481 | 41 |
| CTCGTAT | 690 | 0.0 | 23.801744 | 42 |
| GTATGCC | 715 | 0.0 | 23.598818 | 45 |
| TCGTATG | 710 | 0.0 | 23.131273 | 43 |
| AGACCGT | 710 | 0.0 | 23.129948 | 28 |
| CCGTCAT | 720 | 0.0 | 22.812616 | 31 |
| CGTATGC | 720 | 0.0 | 22.810005 | 44 |
| ACCGTCA | 740 | 0.0 | 22.49754 | 30 |
| GACCGTC | 760 | 0.0 | 21.905499 | 29 |
| CGGAAGA | 780 | 0.0 | 21.659515 | 1 |
| AATCTCG | 775 | 0.0 | 21.48152 | 39 |
| GAGACCG | 775 | 0.0 | 21.479063 | 27 |
| CGTCATC | 765 | 0.0 | 21.470697 | 32 |
| ATCTCGT | 805 | 0.0 | 20.401495 | 40 |
| ATCAATC | 835 | 0.0 | 19.93794 | 36 |
| CCGAGAC | 860 | 0.0 | 19.356133 | 25 |
| TCAATCT | 920 | 0.0 | 18.829464 | 37 |