FastQCFastQC Report
Mon 6 Jun 2016
ERR1378765.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378765.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences772326
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTA601.546141E-1037.49946229
CCGTAAG708.1308826E-1032.14239531
ACCGTAA708.1308826E-1032.14239530
CGTATGC651.4024408E-831.15339944
CTTCGCT300.005143328630.0034563
AGACCGT751.7025741E-929.9995728
CTCGTAT702.8840077E-828.92815442
GCGGTTC702.8840077E-828.9281548
AGCGGTT702.8840077E-828.9281547
CGTAAGA755.6348654E-826.99961332
CGGTTCA856.4756023E-926.4702079
TCTCGTA801.0529948E-725.31213641
GAGCGGT851.8910578E-723.8247286
TATCTCG851.8922401E-723.82318739
CGGAAGA903.2783646E-722.5040471
AGAGCGG903.2824573E-722.5011335
AATGCCG903.2844946E-722.49967621
CCGAGAC903.2844946E-722.49967625
TCGTATG903.2844946E-722.49967643
AAGAGCG1056.09798E-821.429654