FastQCFastQC Report
Mon 6 Jun 2016
ERR1390674.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390674.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences845283
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGAGAC807.576491E-519.6819145
CACGCCC706.989164E-419.2825211
AAAGCGC1153.3939214E-617.6370815
AAGCGCT1205.0911603E-616.9022056
AGCGCTC1004.1669115E-415.7492557
CGCCACC1758.0140853E-714.1656555
CGGGGTT1801.1040265E-613.7689011
CCCGCCA1504.213131E-513.5185583
CAAAGCG1200.001637272413.1446014
CCGCCAC1555.7255405E-513.0840254
TTCACCG1250.00225146512.5994037
CGCTCCA1250.00225146512.5994039
GCGCCTG1300.003026792812.11194416
GACAGTA1350.00401231611.66404440
CCACGCC1751.8041776E-411.5708810
ACCACGC1650.001432568110.9085759
ACCCGGG1650.00143469210.90663940
CGTTTCC1700.001815684510.6027911
GAACCCG1800.0029579869.99775238
TAGTCCC2709.258118E-69.99775223