FastQCFastQC Report
Mon 6 Jun 2016
ERR1379407.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379407.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1039239
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTAGAATCTCGTATGCC85960.8271437080402101Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATTAG10700.043.1069732
GACCGAT10650.042.8868229
CGTATGC10800.042.499544
CCGATTA10750.042.48787331
ACCGATT10800.042.2911730
TCTCGTA11000.041.7267841
ATCTCGT11050.041.5379740
CTCGTAT11050.041.5379742
TCGTATG11050.041.5379743
AGACCGA11100.041.14816728
GTATGCC11200.040.7807745
GAGACCG11350.040.44005227
AATCTCG12050.038.4642839
CCGAGAC12000.038.06205425
CGGTTCA12200.037.806939
CGGAAGA12050.037.534291
GCGGTTC12300.037.4995578
GATTAGA12350.037.34773633
GAGCGGT12400.037.1989336
AGCGGTT12500.036.8995677