Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378901.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 658337 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCAAGGATCTCGTATGCC | 7936 | 1.2054616404668126 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 4430 | 0.6729076445650176 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1025 | 0.1556953353677524 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGCAAG | 1035 | 0.0 | 35.65187 | 32 |
| AGATCGG | 650 | 0.0 | 35.307392 | 17 |
| CCGGCAA | 1050 | 0.0 | 35.14256 | 31 |
| GACCGGC | 1070 | 0.0 | 34.69597 | 29 |
| AGACCGG | 1075 | 0.0 | 34.32529 | 28 |
| TCGTATG | 1045 | 0.0 | 34.23416 | 43 |
| ACCGGCA | 1080 | 0.0 | 34.166378 | 30 |
| ATCTCGT | 1050 | 0.0 | 34.07114 | 40 |
| TCTCGTA | 1055 | 0.0 | 33.909664 | 41 |
| CGTATGC | 1050 | 0.0 | 33.856857 | 44 |
| GTATGCC | 1050 | 0.0 | 33.856857 | 45 |
| CGAGATC | 685 | 0.0 | 33.50337 | 15 |
| CTCGTAT | 1070 | 0.0 | 33.434296 | 42 |
| GAGACCG | 1105 | 0.0 | 33.393383 | 27 |
| TCGGAAG | 700 | 0.0 | 32.78544 | 20 |
| GATCTCG | 1110 | 0.0 | 32.63486 | 39 |
| ATCGGAA | 705 | 0.0 | 32.552914 | 19 |
| GATCGGA | 710 | 0.0 | 32.32367 | 18 |
| GAGATCG | 710 | 0.0 | 32.32367 | 16 |
| GGATCTC | 1125 | 0.0 | 31.99973 | 38 |