Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379145.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1517019 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAAGAATCTCGTATGCC | 5080 | 0.3348672627040268 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAAGAATCTCGTATGCCGTC | 4791 | 0.3158167432312977 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 645 | 0.0 | 41.855347 | 43 |
| ATGCCGT | 725 | 0.0 | 36.926517 | 44 |
| TGCCGTC | 785 | 0.0 | 34.104107 | 45 |
| CTCGTAT | 1150 | 0.0 | 23.475388 | 39 |
| ACCGTTA | 1160 | 0.0 | 23.466183 | 27 |
| CGTTAAG | 1165 | 0.0 | 23.36624 | 29 |
| CCGTTAA | 1175 | 0.0 | 23.358843 | 28 |
| GACCGTT | 1175 | 0.0 | 23.166615 | 26 |
| CGGAAGA | 935 | 0.0 | 23.130037 | 1 |
| CGTATGC | 1185 | 0.0 | 22.971874 | 41 |
| AGACCGT | 1225 | 0.0 | 22.588327 | 25 |
| TCGTATG | 1205 | 0.0 | 22.403898 | 40 |
| GTATGCC | 1240 | 0.0 | 22.315817 | 42 |
| TCTCGTA | 1220 | 0.0 | 22.127712 | 38 |
| ATCTCGT | 1250 | 0.0 | 21.59807 | 37 |
| AATCTCG | 1265 | 0.0 | 21.519817 | 36 |
| GAGACCG | 1280 | 0.0 | 21.266228 | 24 |
| CCGAGAC | 1320 | 0.0 | 20.792227 | 22 |
| GCGGTTC | 1495 | 0.0 | 20.03144 | 5 |
| CGGTTCA | 1485 | 0.0 | 20.014046 | 6 |