Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378587.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 758515 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2315 | 0.30520161104262933 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1886 | 0.24864373150168423 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGATGAC | 290 | 0.0 | 41.894585 | 18 |
| GATGACG | 300 | 0.0 | 41.248066 | 19 |
| TAAGCCG | 295 | 0.0 | 41.18451 | 13 |
| TTCGGTA | 245 | 0.0 | 40.40627 | 22 |
| CCGATGA | 305 | 0.0 | 39.834194 | 17 |
| CGGTATT | 245 | 0.0 | 39.487946 | 24 |
| AGCCGAT | 310 | 0.0 | 39.191708 | 15 |
| ATGACGT | 310 | 0.0 | 39.191708 | 20 |
| ACGTCAT | 310 | 0.0 | 39.191708 | 23 |
| CGTCATA | 310 | 0.0 | 39.191708 | 24 |
| AATTCGG | 255 | 0.0 | 38.82171 | 20 |
| GACGTCA | 315 | 0.0 | 38.56962 | 22 |
| GCGGTCT | 260 | 0.0 | 38.075138 | 36 |
| AGGCGGT | 260 | 0.0 | 38.075138 | 34 |
| TGACGTC | 320 | 0.0 | 37.96697 | 21 |
| GCCGATG | 320 | 0.0 | 37.96697 | 16 |
| AAGCCGA | 325 | 0.0 | 37.382862 | 14 |
| GGCGGTC | 280 | 0.0 | 36.96255 | 35 |
| ATTCGGT | 270 | 0.0 | 36.66495 | 21 |
| GAATTCG | 270 | 0.0 | 36.66495 | 19 |