Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378591.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1023646 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3960 | 0.38685248611336337 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2985 | 0.29160471491120954 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGACGTC | 415 | 0.0 | 41.744587 | 21 |
| TAAGCCG | 410 | 0.0 | 41.156166 | 13 |
| CGTCATA | 435 | 0.0 | 39.825294 | 24 |
| GACGTCA | 445 | 0.0 | 39.435932 | 22 |
| AGCCGAT | 430 | 0.0 | 39.24193 | 15 |
| AGGCGGT | 410 | 0.0 | 38.96117 | 34 |
| TTCGGTA | 410 | 0.0 | 38.96117 | 22 |
| AATTCGG | 415 | 0.0 | 37.949623 | 20 |
| GAATTCG | 415 | 0.0 | 37.949623 | 19 |
| GCCGATG | 460 | 0.0 | 37.171772 | 16 |
| CGATGAC | 460 | 0.0 | 37.171772 | 18 |
| GGCGGTC | 430 | 0.0 | 37.149025 | 35 |
| TCGGTAT | 430 | 0.0 | 37.149025 | 23 |
| ATTCGGT | 425 | 0.0 | 37.05669 | 21 |
| ATGACGT | 475 | 0.0 | 36.945244 | 20 |
| ACGTCAT | 475 | 0.0 | 36.945244 | 23 |
| TCGGGGA | 435 | 0.0 | 36.722027 | 14 |
| CGGTATT | 435 | 0.0 | 36.722027 | 24 |
| CCTCGGG | 370 | 0.0 | 36.484386 | 12 |
| GATGACG | 465 | 0.0 | 36.288235 | 19 |