Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379132.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1328545 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGTGATCTCGTATGCCGTC | 2371 | 0.17846591571982884 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGTGATCTCGTATGCC | 2361 | 0.17771321257465875 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 375 | 0.0 | 35.393784 | 43 |
| ATGCCGT | 425 | 0.0 | 30.700489 | 44 |
| TGCCGTC | 465 | 0.0 | 27.575802 | 45 |
| CGGAAGA | 570 | 0.0 | 22.926094 | 1 |
| CTCGTAT | 620 | 0.0 | 20.68185 | 42 |
| ACCGGAT | 630 | 0.0 | 20.3551 | 30 |
| CGTATGC | 635 | 0.0 | 20.193304 | 44 |
| CGGATGT | 660 | 0.0 | 19.771486 | 32 |
| TCGTATG | 650 | 0.0 | 19.727304 | 43 |
| TCTCGTA | 655 | 0.0 | 19.576714 | 41 |
| AGACCGG | 670 | 0.0 | 19.139149 | 28 |
| GACCGGA | 675 | 0.0 | 18.998093 | 29 |
| GAGACCG | 675 | 0.0 | 18.995949 | 27 |
| ATCTCGT | 705 | 0.0 | 18.507387 | 40 |
| GAGCGGT | 850 | 0.0 | 18.28352 | 3 |
| CGGTTCA | 850 | 0.0 | 18.279387 | 6 |
| AGAGCGG | 880 | 0.0 | 18.176218 | 2 |
| CCGGATG | 710 | 0.0 | 18.062246 | 31 |
| AGCGGTT | 870 | 0.0 | 17.863207 | 4 |
| GCGGTTC | 875 | 0.0 | 17.757788 | 5 |