FastQCFastQC Report
Mon 6 Jun 2016
ERR1378873.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378873.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences898700
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT38750.43117836875486815Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTCTAATCTCGTATGCC28430.3163458328697007Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTCTAATCTCGTATGCCGTC28040.31200623122287746Illumina Paired End PCR Primer 2 (96% over 32bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2850.038.68081343
ATCGGAA6050.035.32354427
ATGCCGT3350.034.25072544
GATCGGA6350.033.6547226
AGATCGG6400.033.04213725
TCGGAAG6950.031.72206928
CCGAGAT7000.030.53133422
TGCCGTC3750.029.99736645
CGAGATC7550.028.30719823
GAGATCG7800.027.39991624
AATGCCG12500.026.27476918
ATGCCGA13000.025.26560619
TGCCGAG13250.024.95868320
GAATGCC13600.024.14960317
GCCGAGA13750.023.39664521
CGGAAGA9800.022.4967729
GGAATGC14550.022.41821916
CTCGTAT5700.022.10332342
TCGTATG5700.022.10332343
CGTATGC5900.021.7353844