FastQCFastQC Report
Mon 6 Jun 2016
ERR1379030.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379030.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1567556
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGGAT352.8220506E-432.14051430
TCGCGCA300.00514003230.0092956
GCGGTTC602.4676867E-422.500518
CGGATGC602.4692854E-422.49835832
TCTCGTA500.002265935822.49835841
TAATTCG654.241267E-420.76771535
GACCGGA550.003938833720.4530529
AGACCGG550.003938833720.4530528
CCGGATG600.00651427618.7486331
GGGCGAC1205.179121E-616.87376828
AGCGGTT952.8196877E-416.5793257
GAGCGGT900.00374700115.0046486
CGTATGC900.003756556414.99890444
GGCGACA1351.5833735E-514.99890429
CCGAGAC950.005379772314.20948925
CGCCACT1605.0327653E-614.0614749
GCGACAG1453.1079104E-513.96449830
GAGACCG1000.00755627413.49901427
AACGCAC1250.002253385512.5990811
CGTGAGC1953.827182E-511.5438791