FastQCFastQC Report
Mon 6 Jun 2016
ERR1390591.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390591.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences317113
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATCTCG403.4512777E-739.3697639
CTCGTAT458.682564E-734.9953442
ACCGTCA458.682564E-734.9953430
CCGTCAC501.9776944E-631.49580831
ATCTCGT554.1567528E-628.63255140
GACCGTC554.1567528E-628.63255129
CGGTTCA554.1567528E-628.6325519
TCTCGTA554.1567528E-628.63255141
AGACCGT554.1567528E-628.63255128
AAGAGCG608.115683E-626.2713584
CGTATGC608.175575E-626.24650644
GAGACCG608.175575E-626.24650627
CGTCACA608.175575E-626.24650632
GAGCGGT702.6978016E-522.4970046
CGGAAGA754.5217595E-521.0403331
AGAGCGG754.5604604E-521.0170885
GCGGTTC754.59386E-520.9972048
CGAAATC550.00393338220.4518229
CCGAGAC807.548692E-519.6848825
TCGTATG807.548692E-519.6848843