Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378808.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 465024 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACTTATCTCGTATGCCGTC | 1409 | 0.3029951142306634 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACTTATCTCGTATGCC | 1314 | 0.28256606110652355 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 609 | 0.13096098265895953 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 125 | 0.0 | 37.79666 | 43 |
| ATGCCGT | 130 | 0.0 | 36.342937 | 44 |
| AATCGCC | 25 | 0.0021056235 | 36.000687 | 39 |
| GATCGCG | 25 | 0.002106735 | 35.99682 | 43 |
| TGCCGTC | 135 | 0.0 | 34.996906 | 45 |
| CGAATTG | 35 | 2.815718E-4 | 32.146927 | 3 |
| CGCCACA | 30 | 0.0051463675 | 29.99735 | 42 |
| AGATCGG | 130 | 0.0 | 29.423637 | 25 |
| TCGGAAG | 145 | 0.0 | 27.931568 | 28 |
| GATCGGA | 150 | 0.0 | 27.000515 | 26 |
| ACTGCGT | 50 | 7.153694E-5 | 26.997614 | 42 |
| ATCGGAA | 175 | 0.0 | 23.143301 | 27 |
| AAACGAA | 50 | 0.0022637604 | 22.49801 | 10 |
| ATGCCGA | 400 | 0.0 | 21.93792 | 19 |
| GAGATCG | 175 | 0.0 | 21.857561 | 24 |
| CTCGTAT | 220 | 0.0 | 21.477684 | 39 |
| CGTGACT | 220 | 0.0 | 21.477684 | 29 |
| CCGTGAC | 220 | 0.0 | 21.477684 | 28 |
| GAGACCG | 220 | 0.0 | 21.477684 | 24 |
| TGCCGAG | 410 | 0.0 | 21.400547 | 20 |