Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379190.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 459314 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTCATTATCTCGTATGCC | 904 | 0.19681525056932733 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGTATG | 95 | 0.0 | 42.630238 | 43 |
| ACCGGTC | 90 | 0.0 | 42.498665 | 30 |
| GACCGGT | 90 | 0.0 | 42.498665 | 29 |
| CTCGTAT | 95 | 0.0 | 40.261894 | 42 |
| GCGGTTC | 95 | 0.0 | 40.261894 | 8 |
| AGCGGTT | 95 | 0.0 | 40.261894 | 7 |
| AGAGCGG | 100 | 0.0 | 38.252964 | 5 |
| CGTATGC | 100 | 0.0 | 38.2488 | 44 |
| CGGTTCA | 100 | 0.0 | 38.2488 | 9 |
| TATCTCG | 100 | 0.0 | 38.2488 | 39 |
| CCGAGAC | 110 | 0.0 | 36.817024 | 25 |
| CCGGTCA | 110 | 0.0 | 36.817024 | 31 |
| CGGTCAT | 110 | 0.0 | 36.817024 | 32 |
| ATCTCGT | 105 | 0.0 | 36.427425 | 40 |
| GAGACCG | 105 | 0.0 | 36.427425 | 27 |
| GAGCGGT | 105 | 0.0 | 36.427425 | 6 |
| AGACCGG | 105 | 0.0 | 36.427425 | 28 |
| AAGAGCG | 110 | 0.0 | 34.782993 | 4 |
| TCTCGTA | 110 | 0.0 | 34.771633 | 41 |
| CGGAAGA | 115 | 0.0 | 33.270687 | 1 |