FastQCFastQC Report
Mon 6 Jun 2016
ERR1378651.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378651.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1505614
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACATAATCTCGTATGCC19400.1288510866663036Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACCGCG207.036491E-444.99674235
ACCGAAC2400.040.3095830
TCGTATG2500.039.59713743
CGTATGC2600.038.0741744
GACCGAA2550.037.9384329
GAGCGGT2950.036.6233336
CTCGTAT2750.035.997442
AGCGGTT3000.035.247457
CCGAACA2750.035.17927631
AGACCGA2850.033.94491228
AGAGCGG3200.033.7621355
ATGCCGA3100.033.3846822
AATGCCG3100.032.65892821
TCTCGTA3050.032.4566741
CGGTTCA3250.031.843859
CGAACAT3050.031.71901732
CGGAAGA3350.031.5911081
GCGGTTC3300.031.3613668
CCGAGAC3100.030.48166525
TGCCGAG3250.030.45933523