Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378943.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 945701 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGAGCATCTCGTATGCC | 9460 | 1.0003161675836232 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 5034 | 0.532303550487945 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1164 | 0.12308330011282637 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGATGAG | 1275 | 0.0 | 38.47009 | 32 |
| ATCTCGT | 1225 | 0.0 | 38.387257 | 40 |
| CGTATGC | 1245 | 0.0 | 38.31478 | 44 |
| GACCGAT | 1285 | 0.0 | 38.170715 | 29 |
| CTCGTAT | 1245 | 0.0 | 38.134052 | 42 |
| TCTCGTA | 1235 | 0.0 | 38.07844 | 41 |
| CCGATGA | 1295 | 0.0 | 37.875957 | 31 |
| TCGTATG | 1260 | 0.0 | 37.858654 | 43 |
| CATCTCG | 1250 | 0.0 | 37.619514 | 39 |
| ACCGATG | 1310 | 0.0 | 37.442265 | 30 |
| AGACCGA | 1320 | 0.0 | 37.15861 | 28 |
| GAGACCG | 1335 | 0.0 | 36.7411 | 27 |
| GTATGCC | 1305 | 0.0 | 36.553185 | 45 |
| GATGAGC | 1385 | 0.0 | 35.577156 | 33 |
| CGAGACC | 1435 | 0.0 | 34.494328 | 26 |
| GAGCATC | 1410 | 0.0 | 33.988922 | 36 |
| AGATCGG | 720 | 0.0 | 32.812073 | 17 |
| GCATCTC | 1450 | 0.0 | 32.430614 | 38 |
| ATGAGCA | 1535 | 0.0 | 32.100563 | 34 |
| GATCGGA | 755 | 0.0 | 31.588995 | 18 |