FastQCFastQC Report
Mon 6 Jun 2016
ERR1378585.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378585.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences884170
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA28030.3170204824863997No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA21470.2428266057432394No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG3250.042.2283313
CGTCATA3250.042.2283324
AGCCGAT3450.039.78030815
GATGACG3600.039.37272319
CGATGAC3550.039.29350318
GACGTCA3500.039.2120222
ACGTCAT3550.038.65973723
TTCGGTA3550.038.65973722
AATTCGG3600.038.12279520
TATGCCG950.037.89254843
ATGACGT3650.037.60056720
CGGTATT3650.037.60056724
TCGGTAT3650.037.60056723
TGACGTC3750.036.5978821
GCCGATG3750.036.5978816
GAATTCG3750.036.5978819
TCCTCGG3350.036.2665611
GCGGTCT3800.036.11633336
AAGCCGA3800.036.11633314
CCGATGA3850.035.6472917