FastQCFastQC Report
Mon 6 Jun 2016
ERR1379236.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379236.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences701921
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC800.036.56493444
CGGTTCA751.8189894E-1235.999839
AGAGCGG850.034.4116025
GCGGTTC803.6379788E-1233.749848
TCTCGTA803.6379788E-1233.7498441
CTCGTAT855.456968E-1231.76455542
GACCGTG855.456968E-1231.76455529
CGTGTAG855.456968E-1231.76455532
TCGTATG950.030.78932843
ATCTCGT901.2732926E-1129.99985740
AGCGGTT901.2732926E-1129.9998577
AGACCGT901.2732926E-1129.99985728
CCGTGTA1004.5474735E-1126.99987231
ATGCCGA1004.5474735E-1126.99987222
AAGAGCG1058.367351E-1125.7141634
AATGCCG1058.367351E-1125.71416321
GAGCGGT1058.367351E-1125.7141636
TGCCGAG1058.367351E-1125.71416323
GAGACCG1101.5097612E-1024.54533827
CCGAGAC1101.5097612E-1024.54533825