FastQCFastQC Report
Mon 6 Jun 2016
ERR1379160.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379160.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences209690
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTCATATCTCGTATGCC10620.5064619199771091Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGGTT1550.043.5483867
AGAGCGG1550.043.5483865
CGTATGC1500.043.544
CTCGTAT1500.043.542
CCGGTTC1650.042.27272831
GAGCGGT1600.042.18756
ACCGGTT1550.042.0967730
GACCGGT1550.042.0967729
GAGACCG1550.042.0967727
TCTCGTA1550.042.0967741
CCGAGAC1550.042.0967725
GCGGTTC1650.040.909098
ATCTCGT1600.040.7812540
AATGCCG1600.040.7812521
CGGAAGA1700.039.7058831
AAGAGCG1700.039.7058834
TATCTCG1650.039.54545239
AGACCGG1650.039.54545228
CGAGACC1650.039.54545226
TCGTATG1700.038.3823543