FastQCFastQC Report
Mon 6 Jun 2016
ERR1378808.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378808.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465024
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACTTATCTCGTATGCCGTC14090.3029951142306634Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACTTATCTCGTATGCC13140.28256606110652355Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT6090.13096098265895953Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1250.037.7966643
ATGCCGT1300.036.34293744
AATCGCC250.002105623536.00068739
GATCGCG250.00210673535.9968243
TGCCGTC1350.034.99690645
CGAATTG352.815718E-432.1469273
CGCCACA300.005146367529.9973542
AGATCGG1300.029.42363725
TCGGAAG1450.027.93156828
GATCGGA1500.027.00051526
ACTGCGT507.153694E-526.99761442
ATCGGAA1750.023.14330127
AAACGAA500.002263760422.4980110
ATGCCGA4000.021.9379219
GAGATCG1750.021.85756124
CTCGTAT2200.021.47768439
CGTGACT2200.021.47768429
CCGTGAC2200.021.47768428
GAGACCG2200.021.47768424
TGCCGAG4100.021.40054720