FastQCFastQC Report
Mon 6 Jun 2016
ERR1378797.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378797.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences953228
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCAATTATCTCGTATGCC9700.10175949510505355Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCAATTATCTCGTATGCCGTC9610.10081533484119225Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1500.035.9985343
CCGCGAT250.002107350235.9985336
ATGCCGT1650.032.7259444
TGCCGTC2000.026.998945
CGGAAGC754.6030204E-520.99914425
CTCGTAT2600.020.76838339
GACCGCC2650.020.37652826
TCTCGTA2650.020.37652838
CGCCAAT2700.019.99918629
CGTATGC2750.019.63556341
ACCGCCA2750.019.63556327
TCGTATG2750.019.63556340
GCGGTTC4500.019.004215
TATCTCG2850.018.94659436
AGACCGC2850.018.94659425
GAGCGGT4600.018.5910743
ATGCCGA4250.018.52865619
CCGCCAA2950.018.30433828
AGAGCGG4550.018.3007562
CGGTTCA4800.018.284346