Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378953.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1110590 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTCAAATCTCGTATGCC | 8964 | 0.8071385479790022 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 3988 | 0.3590884124654463 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGAGTCA | 1315 | 0.0 | 37.299667 | 32 |
| CCGAGTC | 1315 | 0.0 | 37.299667 | 31 |
| TCTCGTA | 1255 | 0.0 | 37.290127 | 41 |
| ATCTCGT | 1265 | 0.0 | 37.17321 | 40 |
| CTCGTAT | 1275 | 0.0 | 37.05812 | 42 |
| CGTATGC | 1305 | 0.0 | 36.37862 | 44 |
| TCGTATG | 1310 | 0.0 | 36.23977 | 43 |
| GAGACCG | 1355 | 0.0 | 36.032524 | 27 |
| GACCGAG | 1360 | 0.0 | 35.90005 | 29 |
| AGACCGA | 1360 | 0.0 | 35.90005 | 28 |
| ACCGAGT | 1370 | 0.0 | 35.80224 | 30 |
| AATCTCG | 1350 | 0.0 | 34.999336 | 39 |
| GTATGCC | 1340 | 0.0 | 34.92471 | 45 |
| CGAGACC | 1460 | 0.0 | 33.903465 | 26 |
| GAGTCAA | 1530 | 0.0 | 32.205273 | 33 |
| CGTTTCG | 30 | 0.0051419996 | 30.006186 | 1 |
| CGGAAGA | 1755 | 0.0 | 28.980331 | 1 |
| CCGAGAC | 1720 | 0.0 | 28.5169 | 25 |
| GTCAAAT | 1715 | 0.0 | 28.07527 | 35 |
| AGTCAAA | 1750 | 0.0 | 28.02804 | 34 |