Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378894.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 880139 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGCTATCTCGTATGCC | 9046 | 1.027792201004614 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 4231 | 0.4807195227117535 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 940 | 0.10680131206548056 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 1345 | 0.0 | 38.311066 | 42 |
| CCGGATG | 1360 | 0.0 | 38.04965 | 31 |
| CGGATGC | 1360 | 0.0 | 38.04965 | 32 |
| ATCTCGT | 1365 | 0.0 | 37.91027 | 40 |
| TCTCGTA | 1365 | 0.0 | 37.91027 | 41 |
| CGTATGC | 1370 | 0.0 | 37.776203 | 44 |
| ACCGGAT | 1370 | 0.0 | 37.77191 | 30 |
| TATCTCG | 1375 | 0.0 | 37.63456 | 39 |
| GACCGGA | 1390 | 0.0 | 37.55216 | 29 |
| TCGTATG | 1380 | 0.0 | 37.50246 | 43 |
| GTATGCC | 1385 | 0.0 | 37.042145 | 45 |
| AGACCGG | 1415 | 0.0 | 36.888687 | 28 |
| GAGACCG | 1420 | 0.0 | 36.7588 | 27 |
| CGAGACC | 1525 | 0.0 | 34.522934 | 26 |
| GCTATCT | 1500 | 0.0 | 34.498344 | 37 |
| GGATGCT | 1520 | 0.0 | 34.04442 | 33 |
| GATGCTA | 1525 | 0.0 | 33.9328 | 34 |
| AGATCGG | 745 | 0.0 | 33.82388 | 17 |
| TGCTATC | 1555 | 0.0 | 33.133457 | 36 |
| GATCGGA | 765 | 0.0 | 32.939594 | 18 |