FastQCFastQC Report
Mon 6 Jun 2016
ERR1379038.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379038.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences749538
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA302.1652395E-644.9977341
ATTACGA250.002107162735.9981889
CCGCTAT401.560384E-533.74829531
CTCGTAT501.9811814E-631.49841342
ACCGCTA453.4904406E-529.9984930
AGACCGC453.4904406E-529.9984928
TCGTATG453.4904406E-529.9984943
GACCGCT507.1575865E-526.9986429
CGCTATA507.1575865E-526.9986432
ATCTCGT551.3680503E-424.54421840
CATCTCG602.4672403E-422.49886539
CGTATGC706.982737E-419.28474244
AGCGGTT706.982737E-419.2847427
AATGCCG851.20419674E-418.52847721
CCTTCGT1102.2434579E-618.4179941
GCGGTTC750.001110108817.9990948
CCGGCTA750.001110108817.99909416
GAGACCG750.001110108817.99909427
AAGAGCG800.001707620216.8786534
GAGCGGT800.001707620216.8786536