Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378854.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 931906 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2736 | 0.2935918429541177 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAATCTATCTCGTATGCC | 2211 | 0.23725568887849202 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAATCTATCTCGTATGCCGTC | 1993 | 0.21386277156708938 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 215 | 0.0 | 38.71687 | 43 |
| TGCCGTC | 250 | 0.0 | 33.29651 | 45 |
| TCGGAAG | 475 | 0.0 | 33.154415 | 28 |
| ATCGGAA | 455 | 0.0 | 32.136036 | 27 |
| AGATCGG | 450 | 0.0 | 31.996643 | 25 |
| GATCGGA | 475 | 0.0 | 30.78294 | 26 |
| ATGCCGT | 275 | 0.0 | 30.26955 | 44 |
| AATGCCG | 915 | 0.0 | 25.568344 | 18 |
| ATGCCGA | 935 | 0.0 | 25.024113 | 19 |
| TGCCGAG | 940 | 0.0 | 24.891003 | 20 |
| CGAGATC | 580 | 0.0 | 24.824982 | 23 |
| CGTATGC | 460 | 0.0 | 24.453957 | 44 |
| TCTCGTA | 470 | 0.0 | 24.41233 | 41 |
| CCGAGAT | 595 | 0.0 | 24.19914 | 22 |
| AGACCGC | 495 | 0.0 | 24.08838 | 28 |
| CTCGTAT | 480 | 0.0 | 23.903744 | 42 |
| GAGATCG | 615 | 0.0 | 23.777992 | 24 |
| GACCGCA | 515 | 0.0 | 23.592289 | 29 |
| TATCTCG | 505 | 0.0 | 23.165886 | 39 |
| CCGCAAT | 520 | 0.0 | 22.932745 | 31 |