FastQCFastQC Report
Mon 6 Jun 2016
ERR1379216.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379216.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences367498
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGAAGATCTCGTATGCC10480.28517161998160534Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTC1500.045.08
AGCGGTT1500.045.07
AATGCCG1450.045.021
GAGCGGT1650.042.2727286
TCTCGTA1550.042.09677541
TGCCGAG1550.042.09677523
AGAGCGG1650.040.909095
CTCGTAT1600.040.7812542
CCGAGAC1600.040.7812525
CGGAAGA1700.039.7058831
CGTATGC1650.039.54545244
GACCGCT1650.039.54545229
ATGCCGA1650.039.54545222
AAGAGCG1750.038.5714264
CGGTTCA1750.038.5714269
AGACCGC1750.038.57142628
ATCTCGT1700.038.3823540
ACCGCTG1700.038.3823530
CGCTGAA1700.038.3823532
GAGACCG1700.038.3823527