FastQCFastQC Report
Mon 6 Jun 2016
ERR1378865.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378865.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1062545
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT39030.36732561915024775Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTATTATCTCGTATGCCGTC28580.2689768433336941Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTATTATCTCGTATGCC26570.25005999745893115Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3300.036.81548343
ATGCCGT3600.034.37248244
TGCCGTC3550.034.22284345
GATCGGA6000.033.74276426
TCGGAAG6450.033.1324328
ATCGGAA6250.032.7529827
AGATCGG6450.031.7373825
AATGCCG12800.026.01004818
ATGCCGA13200.025.22186519
CCGAGAT8150.025.11731322
TGCCGAG13700.024.3013620
CGAGATC8450.024.22557423
GAATGCC14050.023.69598817
GAGATCG8700.023.52943824
CGGAAGA9400.022.25586529
GGAATGC15100.021.89927716
GCCGAGA15300.021.46598421
CTCGTAT5900.021.35436842
TCTCGTA5950.021.17492141
TCGTATG5950.021.17492143