FastQCFastQC Report
Mon 6 Jun 2016
ERR1379195.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379195.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478399
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCTATAATCTCGTATGCC13500.2821912253161064Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG1350.041.6659943
CGTATGC1400.040.17791744
CCGCCTA1400.040.17791731
AAGAGCG1500.039.0034454
GAGCGGT1500.039.0034456
CGGTTCA1450.038.7924739
GACCGCC1450.038.79247329
GAGACCG1450.038.79247327
AGACCGC1450.038.79247328
GCGGTTC1550.037.7452668
CTCGTAT1500.037.49939342
CGCCTAT1500.037.49939332
TCTCGTA1500.037.49939341
ATCTCGT1550.036.2897340
CCGAGAC1550.036.2897325
CGGAAGA1700.035.7347151
AGAGCGG1650.035.4576765
AGCGGTT1700.034.4148037
ACCGCCT1650.034.0903630
AATGCCG1700.033.08769621