Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378634.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 893923 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3374 | 0.3774374302932132 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2667 | 0.2983478442774154 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGGTAT | 380 | 0.0 | 40.852623 | 23 |
| CGGTATT | 385 | 0.0 | 40.32207 | 24 |
| GACGTCA | 365 | 0.0 | 40.065903 | 22 |
| TAAGCCG | 365 | 0.0 | 40.065903 | 13 |
| CGTCATA | 375 | 0.0 | 39.59744 | 24 |
| ACGTCAT | 370 | 0.0 | 39.524475 | 23 |
| GGCGGTC | 420 | 0.0 | 39.104614 | 35 |
| ATGACGT | 380 | 0.0 | 39.076424 | 20 |
| AGCCGAT | 375 | 0.0 | 38.99748 | 15 |
| TGACGTC | 375 | 0.0 | 38.99748 | 21 |
| GCCGATG | 375 | 0.0 | 38.99748 | 16 |
| AGGCGGT | 410 | 0.0 | 38.963074 | 34 |
| TATGCCG | 140 | 0.0 | 38.568935 | 43 |
| AAGCCGA | 380 | 0.0 | 38.484356 | 14 |
| CGATGAC | 380 | 0.0 | 38.484356 | 18 |
| GCGGTCT | 420 | 0.0 | 38.033253 | 36 |
| TTCGGTA | 410 | 0.0 | 37.863407 | 22 |
| TTCCTCG | 345 | 0.0 | 37.823643 | 10 |
| GATGACG | 390 | 0.0 | 37.497574 | 19 |
| AATTCGG | 425 | 0.0 | 37.056427 | 20 |