Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379156.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 345238 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTAACATCTCGTATGCC | 1356 | 0.39277252214414404 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGTATG | 95 | 0.0 | 44.99884 | 43 |
| ACCGCTT | 105 | 0.0 | 42.85604 | 30 |
| CGTATGC | 100 | 0.0 | 42.7489 | 44 |
| CTCGTAT | 100 | 0.0 | 42.7489 | 42 |
| CCGCTTA | 100 | 0.0 | 42.7489 | 31 |
| TCTCGTA | 100 | 0.0 | 42.7489 | 41 |
| GACCGCT | 105 | 0.0 | 40.713238 | 29 |
| CGCTTAA | 105 | 0.0 | 40.713238 | 32 |
| GTATGCC | 110 | 0.0 | 38.862637 | 45 |
| AGACCGC | 110 | 0.0 | 38.862637 | 28 |
| ATCTCGT | 115 | 0.0 | 37.17296 | 40 |
| GAGACCG | 115 | 0.0 | 37.17296 | 27 |
| AGCGGTT | 130 | 0.0 | 34.614494 | 7 |
| GCGGTTC | 135 | 0.0 | 33.332474 | 8 |
| GAGCGGT | 135 | 0.0 | 33.332474 | 6 |
| CCGAGAC | 130 | 0.0 | 32.88377 | 25 |
| CGGTTCA | 140 | 0.0 | 32.142033 | 9 |
| CATCTCG | 140 | 0.0 | 30.53493 | 39 |
| AATGCCG | 150 | 0.0 | 29.999228 | 21 |
| AGAGCGG | 150 | 0.0 | 29.999228 | 5 |