FastQCFastQC Report
Mon 6 Jun 2016
ERR1390705.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390705.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences644521
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTTCG206.9695985E-445.0801544
GATCGGA551.12953785E-732.7168918
GACCGTT352.8242634E-432.1326629
CATCGAG300.005153589429.99048244
AGACCGT406.174627E-428.1160828
ACCGTTG406.174627E-428.1160830
ATCGGAA608.204439E-626.24167319
AGATCGG709.3226663E-725.7061317
TCGGAAG651.5261474E-524.22308220
TCTCGTA500.002267715522.49286341
GAGACCG550.003941927620.44805527
TCGTATG550.003941927620.44805543
GCGGTTC807.574864E-519.68125528
CGGAAGA951.3179673E-518.94135921
CGGAAGC600.00651939618.74405125
AGCGGTT851.2063296E-418.52353527
CGGTTCA901.8686007E-417.49444829
AGAGCGG901.8686007E-417.49444825
CCCGCCA800.001690381116.9037443
CCGGCTA1205.181624E-616.86964616