FastQCFastQC Report
Mon 6 Jun 2016
ERR1378826.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378826.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences760298
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGGAACATCTCGTATGCCGTC11650.15322939163328064Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGGAACATCTCGTATGCC11360.14941509776429768Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC1350.038.3290245
GTCCGAC250.002107144335.99831836
TATGCCG1500.034.4961243
ATGCCGT1850.027.96982644
CGGAAGA2700.020.8446981
CGCCCGG550.003936397420.45358813
TCTCGTA2650.020.37506541
AGAGCGG4000.019.1316552
GCGGTTC4050.018.8929775
AGACCGT2750.018.8185425
GAGACCG3000.018.75035727
CGGTTCA4100.018.6625756
CATCTCG2900.018.6198239
AATGCCG4000.018.56163218
ATGCCGA4000.018.56163219
GAGCGGT4250.018.535863
CTCGTAT2800.018.48127739
CGTATGC2950.018.30302441
AAGAGCG4250.018.0098191
ATCTCGT3000.017.99915940