FastQCFastQC Report
Mon 6 Jun 2016
ERR1378962.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378962.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1211410
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT75530.6234883317786711Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCCGTC39680.3275521912482149Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCC31960.26382479920093116Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4750.036.95747443
GATCGGA11200.034.95192726
ATCGGAA11150.034.90688727
AGATCGG11350.034.49000525
TCGGAAG11700.034.2274128
TGCCGTC5300.033.1222645
ATGCCGT5400.032.50888444
CCGAGAT13150.029.94002722
CGAGATC13150.029.94002723
GAGATCG13150.029.76894224
TGCCGAG21300.027.3564720
ATGCCGA21300.027.25084519
AATGCCG21450.027.16516518
CGGAAGA15650.025.73229829
GCCGAGA22750.025.11841421
GAATGCC23550.024.83832617
GGAATGC24650.024.09516
GAAGAGC18100.022.6220931
AGGAATG27650.021.15524715
CGTCGTA8300.021.14250429