FastQCFastQC Report
Mon 6 Jun 2016
ERR1378984.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378984.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1169178
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT38210.32681080211909563Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCAGATATCTCGTATGCCGTC22830.19526539158280434Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3100.032.67178743
GCGCAAC352.819337E-432.14493612
TGCCGTC3100.031.94574545
CTCGTAT3250.031.1558639
ATCGGAA5000.031.04669427
TCGGAAG5150.030.57926828
ATGCCGT3250.030.47132744
GATCGGA5100.030.43793726
TCTCGTA3350.030.22583438
CGTATGC3450.028.69996541
AATGCCG9200.028.61108618
TATCTCG3650.028.35799636
TCGTATG3500.028.28754440
AGATCGG5700.027.6286425
ATGCCGA9650.027.27688819
TGCCGAG9600.027.18460720
CGGAAGA5900.027.0733929
AGACCGG3750.026.99712625
ACCGGCA3850.026.88025727
GAGACCG3850.026.29590224