FastQCFastQC Report
Mon 6 Jun 2016
ERR1378689.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378689.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1029996
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACCTAATCTCGTATGCC11690.11349558639062676Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTACC1550.037.74030731
ACCGTAC1500.037.4983830
CGTATGC1550.036.29051644
GACCGTA1550.036.28875429
CGTACCT1650.034.08943632
ATCTCGT1750.033.42712840
GAGCGGT1900.033.1693466
AGACCGT1850.032.83642228
GCGGTTC1950.032.304738
TCTCGTA1750.032.14146841
GAGACCG1850.031.62025627
AATGCCG1900.030.7866521
CTCGTAT1850.030.40409342
TCGTATG1950.029.99870543
AGCGGTT2100.029.997257
ATGCCGA1950.029.99724822
CCGAGAC1900.029.60398725
AGAGCGG2150.029.3124475
CGGAAGA2300.028.3848761
CGGTTCA2150.028.2532239