Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379184.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 470578 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATTGCATCTCGTATGCC | 1777 | 0.3776207132505132 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATTG | 225 | 0.0 | 42.99939 | 32 |
| GACCGTA | 225 | 0.0 | 41.999405 | 29 |
| CCGTATT | 225 | 0.0 | 41.999405 | 31 |
| TCTCGTA | 225 | 0.0 | 41.999405 | 41 |
| AGACCGT | 225 | 0.0 | 41.999405 | 28 |
| CGTATGC | 230 | 0.0 | 41.086376 | 44 |
| CTCGTAT | 235 | 0.0 | 40.212196 | 42 |
| TCGTATG | 235 | 0.0 | 40.212196 | 43 |
| ACCGTAT | 235 | 0.0 | 40.212196 | 30 |
| CATCTCG | 240 | 0.0 | 39.374443 | 39 |
| GAGACCG | 240 | 0.0 | 39.374443 | 27 |
| GCGGTTC | 255 | 0.0 | 37.058296 | 8 |
| AGCGGTT | 255 | 0.0 | 37.058296 | 7 |
| CCGAGAC | 250 | 0.0 | 36.89948 | 25 |
| CGGTTCA | 260 | 0.0 | 36.34564 | 9 |
| GTATGCC | 260 | 0.0 | 36.34564 | 45 |
| GAGCGGT | 265 | 0.0 | 35.66366 | 6 |
| AGAGCGG | 265 | 0.0 | 35.66366 | 5 |
| ATCTCGT | 265 | 0.0 | 35.65987 | 40 |
| GTATTGC | 265 | 0.0 | 35.65987 | 33 |