Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378592.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 505714 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2378 | 0.4702262543651155 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1607 | 0.3177685411121701 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 200 | 0.0 | 43.873074 | 13 |
| CCGATGA | 210 | 0.0 | 42.85526 | 17 |
| AGCCGAT | 215 | 0.0 | 40.81216 | 15 |
| ACGTCAT | 215 | 0.0 | 40.81216 | 23 |
| CGTCATA | 215 | 0.0 | 40.81216 | 24 |
| GATGACG | 225 | 0.0 | 39.99824 | 19 |
| ATGACGT | 230 | 0.0 | 39.128716 | 20 |
| GACGTCA | 225 | 0.0 | 38.998283 | 22 |
| CGATGAC | 225 | 0.0 | 38.998283 | 18 |
| TGACGTC | 230 | 0.0 | 38.150497 | 21 |
| GCCGATG | 230 | 0.0 | 38.150497 | 16 |
| AAGCCGA | 230 | 0.0 | 38.150497 | 14 |
| TCGGTAT | 195 | 0.0 | 36.921455 | 23 |
| CGGTATT | 200 | 0.0 | 35.998417 | 24 |
| CTAGGCG | 25 | 0.0021064496 | 35.998417 | 30 |
| GCGGTCT | 205 | 0.0 | 35.120407 | 36 |
| CGGGGAA | 205 | 0.0 | 35.120407 | 15 |
| AATTCGG | 205 | 0.0 | 35.120407 | 20 |
| CTCGTAT | 45 | 8.690113E-7 | 34.998463 | 39 |
| TATGCCG | 45 | 8.690113E-7 | 34.998463 | 43 |