Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378603.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 591320 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3547 | 0.599844415883109 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2549 | 0.43106947169045523 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TAAGCCG | 335 | 0.0 | 43.652287 | 13 |
| TCGGTAT | 305 | 0.0 | 42.782543 | 23 |
| AGCCGAT | 350 | 0.0 | 41.781475 | 15 |
| ATTCGGT | 320 | 0.0 | 41.480167 | 21 |
| ATGACGT | 360 | 0.0 | 41.245815 | 20 |
| AAGCCGA | 355 | 0.0 | 41.193005 | 14 |
| GCGGTCT | 320 | 0.0 | 40.777115 | 36 |
| CGGTATT | 320 | 0.0 | 40.777115 | 24 |
| CGTCATA | 365 | 0.0 | 40.6808 | 24 |
| GGCGGTC | 325 | 0.0 | 40.149773 | 35 |
| CCTCGGG | 300 | 0.0 | 39.745964 | 12 |
| ACGTCAT | 375 | 0.0 | 39.59598 | 23 |
| CTCGGGG | 290 | 0.0 | 39.56495 | 13 |
| TTCGGTA | 330 | 0.0 | 39.541443 | 22 |
| CGTATCT | 80 | 0.0 | 39.371006 | 29 |
| TGACGTC | 380 | 0.0 | 39.07498 | 21 |
| AGGCGGT | 335 | 0.0 | 38.95127 | 34 |
| AATTCGG | 340 | 0.0 | 38.378456 | 20 |
| CCGATGA | 390 | 0.0 | 38.07306 | 17 |
| CGATGAC | 390 | 0.0 | 38.07306 | 18 |