Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378980.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 811507 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 7054 | 0.8692469689109275 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACAGATCTCGTATGCCGTC | 4209 | 0.5186646572364749 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACAGATCTCGTATGCC | 1986 | 0.24472986677872158 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 872 | 0.10745440273466525 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 525 | 0.0 | 38.148182 | 43 |
| ATGCCGT | 530 | 0.0 | 37.36371 | 44 |
| TCGGAAG | 1020 | 0.0 | 35.29035 | 28 |
| AGATCGG | 1020 | 0.0 | 35.069786 | 25 |
| TGCCGTC | 565 | 0.0 | 35.049145 | 45 |
| GATCGGA | 1010 | 0.0 | 34.97151 | 26 |
| ATCGGAA | 1015 | 0.0 | 34.577583 | 27 |
| CCGAGAT | 1055 | 0.0 | 33.693085 | 22 |
| GAGATCG | 1065 | 0.0 | 33.376717 | 24 |
| CGAGATC | 1090 | 0.0 | 32.404793 | 23 |
| AATGCCG | 1890 | 0.0 | 29.996798 | 18 |
| TGCCGAG | 1945 | 0.0 | 28.917221 | 20 |
| ATGCCGA | 1965 | 0.0 | 28.85188 | 19 |
| GCCGAGA | 1955 | 0.0 | 28.424076 | 21 |
| GAATGCC | 2010 | 0.0 | 28.205944 | 17 |
| CGGAAGA | 1285 | 0.0 | 28.012573 | 29 |
| GGAATGC | 2045 | 0.0 | 27.723202 | 16 |
| GACCGTG | 750 | 0.0 | 26.697147 | 26 |
| CTCGTAT | 765 | 0.0 | 26.472654 | 39 |
| CGTATGC | 770 | 0.0 | 26.300755 | 41 |