Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379106.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1236384 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGACATCTCGTATGCCGTC | 3099 | 0.25065028340709683 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGACATCTCGTATGCC | 2844 | 0.23002562310738411 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 480 | 0.0 | 34.68139 | 43 |
| ATGCCGT | 530 | 0.0 | 31.834013 | 44 |
| TGCCGTC | 530 | 0.0 | 31.834013 | 45 |
| CGATTAA | 30 | 0.005149807 | 29.997143 | 8 |
| CGGAAGA | 555 | 0.0 | 26.795393 | 1 |
| CTCGTAT | 720 | 0.0 | 22.808483 | 39 |
| TCGTATG | 760 | 0.0 | 22.200035 | 40 |
| TCTCGTA | 745 | 0.0 | 22.042204 | 38 |
| CGTATGC | 765 | 0.0 | 21.76087 | 41 |
| ATCTCGT | 765 | 0.0 | 21.467672 | 37 |
| GTATGCC | 810 | 0.0 | 20.829662 | 42 |
| AGACCGG | 805 | 0.0 | 20.400131 | 25 |
| GACCGGA | 810 | 0.0 | 20.272566 | 26 |
| CGGTTCA | 930 | 0.0 | 20.09987 | 6 |
| ACCGGAT | 830 | 0.0 | 20.055086 | 27 |
| GAGCGGT | 955 | 0.0 | 19.57766 | 3 |
| GCGGTTC | 965 | 0.0 | 19.37086 | 5 |
| GAGACCG | 850 | 0.0 | 19.320126 | 24 |
| AGCGGTT | 970 | 0.0 | 19.274912 | 4 |
| CCGGATG | 865 | 0.0 | 19.245941 | 28 |