FastQCFastQC Report
Mon 6 Jun 2016
ERR1379282.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379282.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498708
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTC453.488249E-529.998338
TGGCGCG300.005145899529.9983312
GAGCGGT453.488249E-529.998336
ACCGGCT450.00122597924.99860830
CGTATGC450.00122597924.99860844
GACCGGC450.00122597924.99860829
AGACCGG450.00122597924.99860828
TCGTATG450.00122597924.99860843
CGGTTCA551.3672031E-424.5440869
AGCGGTT654.2351882E-420.7680727
TCTCGTA550.00393244620.45545841
CGGAAGA706.964382E-419.2904421
AAGAGCG706.97379E-419.2865754
AGAGCGG706.97379E-419.2865755
ATGCCGA706.9784984E-419.2846422
CCGGCTG600.00650754218.74895531
GTATGCC600.00650754218.74895545
AATGCCG750.001109439917.99899921
TGCCGAG800.001709649316.8740623
CCGAGAC1056.0309184E-414.99916525