Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390758.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 617318 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 1773 | 0.28721015748771295 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGCAGATCTCGTATGCC | 954 | 0.15453947560252576 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGATGCA | 155 | 0.0 | 31.926746 | 32 |
| TCTCGTA | 155 | 0.0 | 31.92416 | 41 |
| CGTATGC | 160 | 0.0 | 30.926529 | 44 |
| CTCGTAT | 160 | 0.0 | 30.926529 | 42 |
| GACCGAT | 165 | 0.0 | 29.99179 | 29 |
| ACCGATG | 165 | 0.0 | 29.99179 | 30 |
| TCGTATG | 165 | 0.0 | 29.989363 | 43 |
| AGATCGG | 350 | 0.0 | 29.563337 | 17 |
| GATCGGA | 360 | 0.0 | 28.742132 | 18 |
| ATCGGAA | 360 | 0.0 | 28.742132 | 19 |
| CCGATGC | 175 | 0.0 | 28.277975 | 31 |
| CCGAGAT | 385 | 0.0 | 28.044273 | 14 |
| CGAGATC | 385 | 0.0 | 28.044273 | 15 |
| CCGAGAC | 415 | 0.0 | 26.556845 | 45 |
| ATCTCGT | 190 | 0.0 | 26.045502 | 40 |
| AGACCGA | 190 | 0.0 | 26.045502 | 28 |
| TCGGAAG | 390 | 0.0 | 25.952332 | 20 |
| GAGACCG | 200 | 0.0 | 25.867922 | 27 |
| GAGATCG | 425 | 0.0 | 24.346277 | 16 |
| GTATGCC | 210 | 0.0 | 23.56307 | 45 |