FastQCFastQC Report
Mon 6 Jun 2016
ERR1379369.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379369.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences639493
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGTACATCTCGTATGCC10930.17091664803211296Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC1450.038.795644
CGGAGTA1450.038.79256432
GAGCGGT1550.037.7414136
TCGTATG1550.037.74141343
TCTCGTA1500.037.49947741
ACCGGAG1550.036.28981830
CTCGTAT1600.035.1557642
ATCTCGT1650.034.09043540
GACCGGA1650.034.09043529
AGACCGG1650.034.09043528
CCGGAGT1700.033.08777631
AGCGGTT1700.033.0877767
GTATGCC1750.032.14492445
GCGGTTC1750.032.142418
CGGAAGA1900.030.7938611
CGGTTCA1950.028.8457539
AGAGCGG2000.028.1268085
CCGAGAC2000.028.12460925
GAGACCG2050.027.43864327
GTACATC2100.026.78534336