FastQCFastQC Report
Mon 6 Jun 2016
ERR1378641.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378641.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences899060
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA31510.35047716503904075No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA22080.24558983827553224No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG3800.042.62741513
GATGACG3950.041.00865619
TTCGGTA3050.040.5698122
CGTCATA4000.040.498324
AAGCCGA4050.039.99609414
ATGACGT4200.039.63898520
TGACGTC4150.039.5744521
ACGTCAT4150.039.5744523
GCCGATG4100.039.5083416
GAATTCG3150.039.2818819
CGATGAC4200.039.10332518
GACGTCA4150.039.03233322
TCGGTAT3200.038.66810223
CCGATGA4350.038.27212517
GCGGTCT3300.038.18021436
AATTCGG3300.038.1780920
AGCCGAT4250.038.11392615
ATTCGGT3350.037.6082721
AGGCGGT3450.035.8680634
CGGTATT3450.035.8680624