FastQCFastQC Report
Mon 6 Jun 2016
ERR1390729.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390729.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517694
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG302.1667965E-644.98908643
GACCGGG401.5615073E-533.74181429
ACCGGGA352.822264E-432.13506330
CGTATGC352.822264E-432.13506344
CTCGTAT352.822264E-432.13506342
GATCGGA406.1702763E-428.1181818
TCTCGTA406.1702763E-428.1181841
ATCTCGT450.001227378324.99393740
TATCTCG450.001227378324.99393739
CCGCTCT500.002266133222.49454342
ATCGGAA500.002266133222.49454319
AGATCGG550.00393919120.44958317
CCGGGAC550.00393919120.44958331
GAGACCG550.00393919120.44958327
CGGGACA550.00393919120.44958332
AAAAGCG600.00650762818.74907510
TCGGAAG600.006514891518.74545320
GTATGCC600.006514891518.74545345
AGACCGG600.006514891518.74545328
CCGAGAC600.006514891518.74545325