FastQCFastQC Report
Mon 6 Jun 2016
ERR1378609.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378609.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences625497
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA30760.4917689453346699No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA24600.3932872579724603No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG3350.042.3129113
TCGGTAT4100.040.60600723
AGCCGAT3500.040.49949615
CGTCATA3500.040.49949624
ATGACGT3500.040.49625820
TTCGGTA4150.040.11677622
TGACGTC3550.039.92588821
ACGTCAT3550.039.92588823
ATTCGGT4200.039.63919421
CCGATGA3600.039.3745117
GGCGGTC4250.039.17598335
CGGTATT4250.039.17598324
CGATGAC3650.038.83513318
TCGGGGA4350.038.79261814
CTCGGGG3850.037.9865413
CGGGGAA4500.037.4995315
AGGCGGT4450.037.41526834
GACGTCA3800.037.29918722
GAATTCG4500.036.9995419
AATTCGG4500.036.99658220