Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378865.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1062545 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3903 | 0.36732561915024775 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTATTATCTCGTATGCCGTC | 2858 | 0.2689768433336941 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTATTATCTCGTATGCC | 2657 | 0.25005999745893115 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 330 | 0.0 | 36.815483 | 43 |
| ATGCCGT | 360 | 0.0 | 34.372482 | 44 |
| TGCCGTC | 355 | 0.0 | 34.222843 | 45 |
| GATCGGA | 600 | 0.0 | 33.742764 | 26 |
| TCGGAAG | 645 | 0.0 | 33.13243 | 28 |
| ATCGGAA | 625 | 0.0 | 32.75298 | 27 |
| AGATCGG | 645 | 0.0 | 31.73738 | 25 |
| AATGCCG | 1280 | 0.0 | 26.010048 | 18 |
| ATGCCGA | 1320 | 0.0 | 25.221865 | 19 |
| CCGAGAT | 815 | 0.0 | 25.117313 | 22 |
| TGCCGAG | 1370 | 0.0 | 24.30136 | 20 |
| CGAGATC | 845 | 0.0 | 24.225574 | 23 |
| GAATGCC | 1405 | 0.0 | 23.695988 | 17 |
| GAGATCG | 870 | 0.0 | 23.529438 | 24 |
| CGGAAGA | 940 | 0.0 | 22.255865 | 29 |
| GGAATGC | 1510 | 0.0 | 21.899277 | 16 |
| GCCGAGA | 1530 | 0.0 | 21.465984 | 21 |
| CTCGTAT | 590 | 0.0 | 21.354368 | 42 |
| TCTCGTA | 595 | 0.0 | 21.174921 | 41 |
| TCGTATG | 595 | 0.0 | 21.174921 | 43 |