Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379380.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 685695 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACGAGTATCTCGTATGCC | 1844 | 0.26892423016063993 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 225 | 0.0 | 40.999603 | 42 |
| CCGACGA | 240 | 0.0 | 38.437126 | 31 |
| GAGACCG | 255 | 0.0 | 37.940807 | 27 |
| CGTATGC | 245 | 0.0 | 37.652695 | 44 |
| GACCGAC | 245 | 0.0 | 37.652695 | 29 |
| ACCGACG | 245 | 0.0 | 37.652695 | 30 |
| GACGAGT | 245 | 0.0 | 37.652695 | 33 |
| TCGTATG | 250 | 0.0 | 36.899643 | 43 |
| ACGAGTA | 250 | 0.0 | 36.899643 | 34 |
| CGAGTAT | 255 | 0.0 | 36.176117 | 35 |
| CGACGAG | 255 | 0.0 | 36.176117 | 32 |
| AGACCGA | 255 | 0.0 | 36.176117 | 28 |
| CGGTTCA | 270 | 0.0 | 34.999657 | 9 |
| TATCTCG | 265 | 0.0 | 34.81098 | 39 |
| TGCCGAG | 275 | 0.0 | 34.3633 | 23 |
| CGGAAGA | 270 | 0.0 | 34.168827 | 1 |
| TCTCGTA | 270 | 0.0 | 34.166332 | 41 |
| AGCGGTT | 280 | 0.0 | 33.749672 | 7 |
| GAGCGGT | 290 | 0.0 | 33.364178 | 6 |
| AGAGCGG | 285 | 0.0 | 33.15999 | 5 |