FastQCFastQC Report
Mon 6 Jun 2016
ERR1379361.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379361.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1734949
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTTCA2050.034.024119
GCGGTTC2100.033.214018
CGTATGC2200.032.72794344
TCGTATG2200.031.70519443
TATCTCG2100.031.0711739
TCTCGTA2200.030.68156241
GAGCGGT2300.030.3267086
CTCGTAT2300.029.34842742
ATCTCGT2300.029.34758240
AGAGCGG2400.029.0630975
GACCGGC2400.029.06225829
AAGAGCG2550.028.2358744
AGACCGG2550.027.35271528
AGCGGTT2650.027.1695867
CGGAAGA2900.025.6061881
CGGCAGA2700.024.99979232
AATGCCG2700.024.99979221
CCGAGAC2900.024.8273825
ACCGGCA2800.024.10694130
GTATGCC3200.023.203645