FastQCFastQC Report
Mon 6 Jun 2016
ERR1390730.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390730.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences786031
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC8870.11284542212711712Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG1650.032.72051617
GATCGGA1700.031.75814818
CTAACGC300.00515307929.991944
TCGGAAG1800.029.991920
GCCGAAG300.00515307929.991929
GCGGTTC1900.029.5972728
AGCGGTT1950.028.83836627
GAGCGGT2050.027.43161626
ATCGGAA2000.026.99442719
ACCGGAC507.168732E-526.9927130
CCGGACC507.168732E-526.9927131
CCGAGAC2100.026.77848245
CGGAAGA2100.025.70734221
ATCTCGT551.3701738E-424.53882840
CGGACCA551.3701738E-424.53882832
AGAGCGG2400.023.43117125
CGAGATC2450.022.95444515
AAGAGCG2450.022.95298424
CGGTTCA2450.022.95298429
AGACCGG602.471058E-422.49392528