Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378968.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1230451 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5001 | 0.4064363391959534 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGATCTATCTCGTATGCCGTC | 3078 | 0.2501521799730343 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 350 | 0.0 | 41.143753 | 43 |
| ATGCCGT | 400 | 0.0 | 36.563293 | 44 |
| ATCGGAA | 685 | 0.0 | 34.81544 | 27 |
| TGCCGTC | 425 | 0.0 | 34.41251 | 45 |
| TCGGAAG | 705 | 0.0 | 33.82777 | 28 |
| AGATCGG | 735 | 0.0 | 32.75315 | 25 |
| GATCGGA | 730 | 0.0 | 32.669285 | 26 |
| CGTATGC | 445 | 0.0 | 32.35894 | 41 |
| AATGCCG | 1245 | 0.0 | 30.721062 | 18 |
| TCTCGTA | 470 | 0.0 | 30.637714 | 38 |
| ACCGTGA | 480 | 0.0 | 30.466934 | 27 |
| ATGCCGA | 1260 | 0.0 | 30.355333 | 19 |
| CTCGTAT | 475 | 0.0 | 30.315214 | 39 |
| TGCCGAG | 1280 | 0.0 | 30.0568 | 20 |
| CGGAAGA | 825 | 0.0 | 29.180079 | 29 |
| TATCTCG | 510 | 0.0 | 28.675928 | 36 |
| TCGTATG | 520 | 0.0 | 28.55715 | 40 |
| CCGAGAT | 860 | 0.0 | 28.515743 | 22 |
| GACCGTG | 505 | 0.0 | 28.513151 | 26 |
| ATCTCGT | 510 | 0.0 | 28.23476 | 37 |