FastQCFastQC Report
Mon 6 Jun 2016
ERR1378605.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378605.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences658742
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA34260.5200822173172501No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA24800.37647516022964983No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG3350.042.31143613
CTCGGGG3200.041.48241413
ACGTCAT3500.041.14091523
GACGTCA3350.040.96821622
CCGATGA3450.040.43287317
CGTCATA3450.040.43287324
GCCGATG3400.040.36573816
TCGGGGA3750.039.59813314
GCGGTCT3900.039.22891636
AGCCGAT3650.038.83378215
TGACGTC3550.038.66014521
TTCGGTA3900.038.6520222
CGGTATT3900.038.6520224
CGATGAC3650.038.21737318
ATTCGGT3950.038.16275421
GGCGGTC3950.038.16275435
CGGGGAA3900.038.07512315
AATTCGG4000.037.68572220
TCGGTAT4000.037.68572223
GAATTCG3950.037.59316319