Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379152.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 613817 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGTTAATCTCGTATGCC | 1078 | 0.17562237605019085 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCGGTTC | 135 | 0.0 | 41.667645 | 8 |
| TCGTATG | 125 | 0.0 | 41.397606 | 43 |
| AATGCCG | 135 | 0.0 | 39.99768 | 21 |
| CTCGTAT | 130 | 0.0 | 39.805386 | 42 |
| CGAAGTT | 130 | 0.0 | 39.805386 | 32 |
| GAGCGGT | 145 | 0.0 | 38.8035 | 6 |
| AGAGCGG | 145 | 0.0 | 38.8035 | 5 |
| CGGTTCA | 145 | 0.0 | 38.790855 | 9 |
| CCGAAGT | 140 | 0.0 | 38.56919 | 31 |
| ATGCCGA | 140 | 0.0 | 38.56919 | 22 |
| GACCGAA | 135 | 0.0 | 38.331112 | 29 |
| TCTCGTA | 135 | 0.0 | 38.331112 | 41 |
| CGTATGC | 145 | 0.0 | 37.239223 | 44 |
| GAGACCG | 140 | 0.0 | 36.962143 | 27 |
| AGACCGA | 140 | 0.0 | 36.962143 | 28 |
| CCGAGAC | 140 | 0.0 | 36.962143 | 25 |
| TGCCGAG | 140 | 0.0 | 36.962143 | 23 |
| CGGAAGA | 155 | 0.0 | 36.305965 | 1 |
| AGCGGTT | 155 | 0.0 | 36.291176 | 7 |
| ACCGAAG | 155 | 0.0 | 34.836693 | 30 |