Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378927.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 579410 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAAACCATCTCGTATGCC | 12186 | 2.103173918296198 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 6497 | 1.1213130598367305 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1391 | 0.2400717971729863 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGAAACCATCTCGTATGCCGTC | 600 | 0.10355361488410623 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGAAAC | 1605 | 0.0 | 36.027622 | 32 |
| CCGGAAA | 1600 | 0.0 | 35.999588 | 31 |
| GTATGCC | 1540 | 0.0 | 35.941143 | 45 |
| GACCGGA | 1615 | 0.0 | 35.665226 | 29 |
| TCTCGTA | 1560 | 0.0 | 35.62459 | 41 |
| CTCGTAT | 1560 | 0.0 | 35.480362 | 42 |
| ATCTCGT | 1575 | 0.0 | 35.428165 | 40 |
| GAGACCG | 1635 | 0.0 | 35.22895 | 27 |
| ACCGGAA | 1640 | 0.0 | 35.121548 | 30 |
| AGACCGG | 1640 | 0.0 | 35.121548 | 28 |
| CGTATGC | 1585 | 0.0 | 35.062687 | 44 |
| CATCTCG | 1600 | 0.0 | 34.73398 | 39 |
| TCGTATG | 1595 | 0.0 | 34.701794 | 43 |
| AGATCGG | 1060 | 0.0 | 34.386395 | 17 |
| GATCGGA | 1085 | 0.0 | 33.801456 | 18 |
| AACCATC | 1675 | 0.0 | 33.71603 | 36 |
| GAGATCG | 1075 | 0.0 | 33.697285 | 16 |
| CGAGACC | 1735 | 0.0 | 33.58751 | 26 |
| ACCATCT | 1695 | 0.0 | 33.450943 | 37 |
| TCGGAAG | 1085 | 0.0 | 33.386715 | 20 |