Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379127.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 675046 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTGAATCTCGTATGCCGTC | 2154 | 0.3190893657617407 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTGAATCTCGTATGCC | 2079 | 0.30797901180067727 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 235 | 0.0 | 36.3819 | 43 |
| ATGCCGT | 295 | 0.0 | 28.219503 | 44 |
| CGGAAGA | 440 | 0.0 | 26.631557 | 1 |
| TGCCGTC | 330 | 0.0 | 25.226526 | 45 |
| CTCGTAT | 475 | 0.0 | 23.68351 | 42 |
| TCGTATG | 470 | 0.0 | 23.45675 | 43 |
| TCTCGTA | 480 | 0.0 | 23.436804 | 41 |
| ACCGGTG | 485 | 0.0 | 23.191751 | 30 |
| GACCGGT | 485 | 0.0 | 23.191751 | 29 |
| CGTATGC | 480 | 0.0 | 22.96807 | 44 |
| CCGGTGT | 510 | 0.0 | 22.059803 | 31 |
| AGACCGG | 510 | 0.0 | 22.054901 | 28 |
| GTATGCC | 500 | 0.0 | 22.049347 | 45 |
| ATCGGAA | 145 | 9.094947E-12 | 21.718668 | 27 |
| CGGTGTG | 545 | 0.0 | 21.468845 | 32 |
| ATCTCGT | 525 | 0.0 | 21.427935 | 40 |
| AATCTCG | 525 | 0.0 | 21.427935 | 39 |
| GAAGAGC | 550 | 0.0 | 21.28945 | 3 |
| GATCGGA | 150 | 1.4551915E-11 | 20.99471 | 26 |
| CCGAGAC | 550 | 0.0 | 20.449394 | 25 |