FastQCFastQC Report
Mon 6 Jun 2016
ERR1378760.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378760.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415295
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCC4280.10305927112052879Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG403.4511868E-739.37489743
CGTATGC458.6823275E-734.99990544
CTCGTAT458.6823275E-734.99990542
ACCGAGT458.6823275E-734.99990530
CGTGATT352.815349E-432.1466451
CGAGTGT501.9776326E-631.49991632
GACCGAG501.9776326E-631.49991629
TCTCGTA501.9776326E-631.49991641
CGGTTCA554.1566072E-628.6362889
ATCTCGT654.8608854E-727.69223240
GAGCGGT608.175259E-626.2499316
AGACCGA608.175259E-626.24993128
GCGGTTC651.52073935E-524.2307038
AAGAGCG651.52073935E-524.2307034
CGGAAGA602.461865E-422.502651
GAGACCG702.6976808E-522.4999427
CCGAGTG702.6976808E-522.4999431
AGAGCGG702.6976808E-522.499945
CGCCACC702.6976808E-522.499945
AGCGGTT754.5936424E-520.9999437