Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378999.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1049333 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5080 | 0.48411705340440064 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAGAATCTCGTATGCCGTC | 2392 | 0.227954329083332 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAGAATCTCGTATGCC | 1604 | 0.15285900662611393 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 350 | 0.0 | 37.929214 | 43 |
| GATCGGA | 700 | 0.0 | 34.3918 | 26 |
| AGATCGG | 730 | 0.0 | 33.286648 | 25 |
| ATCGGAA | 725 | 0.0 | 33.205875 | 27 |
| ATGCCGT | 405 | 0.0 | 32.77833 | 44 |
| TGCCGTC | 405 | 0.0 | 32.77833 | 45 |
| TCGGAAG | 760 | 0.0 | 32.56479 | 28 |
| CCGAGAT | 835 | 0.0 | 29.639809 | 22 |
| CGAGATC | 820 | 0.0 | 29.633238 | 23 |
| AATGCCG | 1340 | 0.0 | 28.87971 | 18 |
| ATGCCGA | 1345 | 0.0 | 28.77235 | 19 |
| TGCCGAG | 1355 | 0.0 | 28.726053 | 20 |
| GAGATCG | 860 | 0.0 | 27.993326 | 24 |
| CGGAAGA | 920 | 0.0 | 26.65679 | 29 |
| GCCGAGA | 1445 | 0.0 | 26.469774 | 21 |
| GAATGCC | 1485 | 0.0 | 26.059805 | 17 |
| CCGTGCA | 535 | 0.0 | 25.23287 | 28 |
| CGTATGC | 530 | 0.0 | 25.047594 | 41 |
| TCGTATG | 530 | 0.0 | 25.047594 | 40 |
| AGACCGT | 545 | 0.0 | 24.76988 | 25 |