Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390767.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 465695 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 836 | 0.17951663642512802 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACGTAGATCTCGTATGCC | 517 | 0.11101686726290813 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGACGT | 75 | 1.7025741E-9 | 29.991123 | 31 |
| ACCGACG | 70 | 2.8867362E-8 | 28.92001 | 30 |
| CGACGTA | 80 | 3.3942342E-9 | 28.116678 | 32 |
| AGATCGG | 155 | 0.0 | 26.121302 | 17 |
| CGTATAA | 80 | 1.0529038E-7 | 25.307728 | 10 |
| ATCTCGT | 80 | 1.0539952E-7 | 25.30501 | 40 |
| CGTATGC | 80 | 1.0539952E-7 | 25.30501 | 44 |
| CTCGTAT | 80 | 1.0539952E-7 | 25.30501 | 42 |
| TCTCGTA | 80 | 1.0539952E-7 | 25.30501 | 41 |
| CCGCGCC | 45 | 0.0012268065 | 24.995287 | 10 |
| CACCGCG | 45 | 0.0012268065 | 24.995287 | 8 |
| GACGTAG | 90 | 1.1908924E-8 | 24.992601 | 33 |
| GATCGGA | 165 | 0.0 | 24.538193 | 18 |
| ATCGGAA | 165 | 0.0 | 24.538193 | 19 |
| TCGGAAG | 170 | 0.0 | 23.81648 | 20 |
| AGACCGA | 85 | 1.8940227E-7 | 23.81648 | 28 |
| CGTAGAT | 95 | 2.1151209E-8 | 23.677202 | 35 |
| ACCGCGC | 50 | 0.002265082 | 22.495758 | 9 |
| TCGTATG | 90 | 3.287605E-7 | 22.493341 | 43 |
| GAGCCGA | 50 | 0.0022664962 | 22.493341 | 40 |