Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379176.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 401227 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 38 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATCCAATCTCGTATGCC | 1202 | 0.29958103517460194 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGACCGT | 135 | 0.0 | 44.99913 | 28 |
| CCGTATC | 145 | 0.0 | 43.447433 | 31 |
| GACCGTA | 140 | 0.0 | 43.392017 | 29 |
| ATCTCGT | 150 | 0.0 | 41.999184 | 40 |
| CGTATGC | 145 | 0.0 | 41.89574 | 44 |
| GAGACCG | 145 | 0.0 | 41.89574 | 27 |
| AATCTCG | 160 | 0.0 | 40.78046 | 39 |
| CGTATCC | 155 | 0.0 | 40.64437 | 32 |
| CTCGTAT | 150 | 0.0 | 40.499214 | 42 |
| TCGTATG | 150 | 0.0 | 40.499214 | 43 |
| ACCGTAT | 160 | 0.0 | 39.374237 | 30 |
| TCTCGTA | 155 | 0.0 | 39.192787 | 41 |
| AGAGCGG | 170 | 0.0 | 37.062725 | 5 |
| CGGAAGA | 175 | 0.0 | 36.008278 | 1 |
| GCGGTTC | 175 | 0.0 | 35.999306 | 8 |
| AGCGGTT | 175 | 0.0 | 35.999306 | 7 |
| GTATGCC | 170 | 0.0 | 35.7346 | 45 |
| CCGAGAC | 170 | 0.0 | 35.7346 | 25 |
| ATGCCGA | 185 | 0.0 | 34.053394 | 22 |
| GAGCGGT | 190 | 0.0 | 33.161385 | 6 |