FastQCFastQC Report
Mon 6 Jun 2016
ERR1379274.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379274.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences673726
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGG356.2449326E-638.57098428
CCGCATA301.1394976E-437.4995715
GCGGTTC401.5597356E-533.7496078
ATGCCGA401.5597356E-533.74960722
CGCATAT300.005146053629.99965716
ATCTCGT453.4889974E-529.99965340
CGTATGC453.4889974E-529.99965344
GACCGGA453.4889974E-529.99965329
GCCGCAT406.163891E-428.12467414
TCGTATG507.154637E-526.99969143
CGGAAGA551.3654237E-424.5506361
CGGAAAG551.3674892E-424.5451732
GAGACCG551.3674892E-424.5451727
TCTCGTA551.3674892E-424.5451741
CTCGTAT651.5226713E-524.23048842
ACCGGAA602.466231E-422.49974330
CCGGAAA654.2360526E-420.7689931
CGCCCGG654.2360526E-420.7689913
TGCCGAG654.2360526E-420.7689923
AAGAGCG706.9764187E-419.2869244