Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378941.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1044959 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGAAAATCTCGTATGCC | 11916 | 1.1403318216312792 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 7129 | 0.6822277237671526 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1572 | 0.15043652430382434 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 1435 | 0.0 | 33.240704 | 41 |
| CCGGTGA | 1475 | 0.0 | 33.100395 | 31 |
| ATCGGAA | 1065 | 0.0 | 32.74519 | 19 |
| CTCGTAT | 1465 | 0.0 | 32.71359 | 42 |
| GTATGCC | 1470 | 0.0 | 32.603878 | 45 |
| ATCTCGT | 1465 | 0.0 | 32.560005 | 40 |
| AGATCGG | 1075 | 0.0 | 32.440586 | 17 |
| TCGGAAG | 1090 | 0.0 | 32.406982 | 20 |
| CGTATGC | 1480 | 0.0 | 32.383583 | 44 |
| GACCGGT | 1510 | 0.0 | 32.333164 | 29 |
| TCGTATG | 1485 | 0.0 | 32.274548 | 43 |
| ACCGGTG | 1515 | 0.0 | 32.226456 | 30 |
| CGGTGAA | 1530 | 0.0 | 32.05756 | 32 |
| GATCGGA | 1090 | 0.0 | 31.994154 | 18 |
| AGACCGG | 1530 | 0.0 | 31.763456 | 28 |
| GAGACCG | 1555 | 0.0 | 31.397478 | 27 |
| AATCTCG | 1550 | 0.0 | 30.774456 | 39 |
| CGAGATC | 1140 | 0.0 | 30.393541 | 15 |
| CCGAGAT | 1160 | 0.0 | 29.869513 | 14 |
| CGAGACC | 1655 | 0.0 | 29.50035 | 26 |