Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378969.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1118326 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6160 | 0.5508232840871088 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTATCAATCTCGTATGCCGTC | 2923 | 0.2613728018484771 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTATCAATCTCGTATGCC | 1339 | 0.11973252879750627 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATCGGAA | 880 | 0.0 | 36.55945 | 27 |
| TATGCCG | 380 | 0.0 | 36.125095 | 43 |
| GATCGGA | 895 | 0.0 | 35.94672 | 26 |
| AGATCGG | 890 | 0.0 | 35.895878 | 25 |
| TCGGAAG | 945 | 0.0 | 34.759007 | 28 |
| ATGCCGT | 415 | 0.0 | 33.62067 | 44 |
| TGCCGTC | 420 | 0.0 | 32.684612 | 45 |
| CCGAGAT | 980 | 0.0 | 32.599323 | 22 |
| AATGCCG | 1455 | 0.0 | 31.698387 | 18 |
| TGCCGAG | 1475 | 0.0 | 31.421106 | 20 |
| ATGCCGA | 1480 | 0.0 | 31.16294 | 19 |
| CGAGATC | 1055 | 0.0 | 30.495087 | 23 |
| CGGAAGA | 1115 | 0.0 | 29.661203 | 29 |
| GCCGAGA | 1545 | 0.0 | 29.269403 | 21 |
| GAGATCG | 1095 | 0.0 | 29.175646 | 24 |
| GAATGCC | 1670 | 0.0 | 27.886894 | 17 |
| GGAATGC | 1710 | 0.0 | 27.497704 | 16 |
| CTCGTAT | 505 | 0.0 | 27.177164 | 39 |
| ACCGCTA | 515 | 0.0 | 26.648262 | 27 |
| CGCTATC | 515 | 0.0 | 26.648262 | 29 |