FastQCFastQC Report
Mon 6 Jun 2016
ERR1379344.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379344.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2182383
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATCTCG957.4396667E-1026.05174339
AGACCGC1201.10703695E-820.62429628
TCGTATG1452.1827873E-1020.17311143
CTCGTAT1251.7687853E-819.80068642
GACCGCT1251.7702405E-819.79932629
CGCTGTA1251.7702405E-819.79932632
CGTATGC1354.2757165E-818.3339744
CCGAGAC1551.0919393E-817.41876225
CCGCTGT1459.683026E-817.06838231
TCTCGTA1459.683026E-817.06838241
ACCGCTG1752.6957423E-916.71371530
GCGGTTC1501.4249963E-716.4994378
AGCGGTT1654.2064312E-714.9994887
AATGCCG1654.2064312E-714.99948821
AGAGCGG1859.60481E-814.5971075
ATCTCGT1705.896927E-714.55832740
CGGTTCA1758.181396E-714.1423759
CGGAAGA1951.824992E-713.8501241
GAGCGGT1951.8306127E-713.8466336
ACGCCCG1656.9186462E-613.63589812