Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379371.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 732131 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGACAATCTCGTATGCC | 1021 | 0.13945591704216867 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 160 | 0.0 | 39.374283 | 41 |
| CTCGTAT | 175 | 0.0 | 37.285034 | 42 |
| CGTATGC | 170 | 0.0 | 37.058147 | 44 |
| GACCGCA | 185 | 0.0 | 34.053432 | 29 |
| CGCAGAC | 185 | 0.0 | 34.053432 | 32 |
| GAGACCG | 200 | 0.0 | 31.499428 | 27 |
| CCGCAGA | 200 | 0.0 | 31.499428 | 31 |
| TCGTATG | 210 | 0.0 | 31.070864 | 43 |
| AGACCGC | 215 | 0.0 | 30.348286 | 28 |
| ATCTCGT | 215 | 0.0 | 29.301794 | 40 |
| GACAATC | 225 | 0.0 | 28.999472 | 36 |
| GCGGTTC | 220 | 0.0 | 28.635841 | 8 |
| ACCGCAG | 220 | 0.0 | 28.635841 | 30 |
| AATCTCG | 240 | 0.0 | 28.124487 | 39 |
| CGGTTCA | 225 | 0.0 | 27.999489 | 9 |
| AGAGCGG | 230 | 0.0 | 27.394545 | 5 |
| GTATGCC | 230 | 0.0 | 27.390804 | 45 |
| AAGAGCG | 240 | 0.0 | 26.253105 | 4 |
| CCGAGAC | 235 | 0.0 | 25.850595 | 25 |
| GAGCGGT | 260 | 0.0 | 24.233639 | 6 |