FastQCFastQC Report
Mon 6 Jun 2016
ERR1378825.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378825.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences992745
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAAGATCTCGTATGCC11380.11463165263990249Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAAGATCTCGTATGCCGTC10420.10496149565094762Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGACG250.00210779235.9971422
TATGCCG1600.033.7473243
TGCCGTC1750.030.8546945
ATGCCGT1900.028.41879344
GATCGGA901.1910743E-824.99927326
ATCGGAA1003.6423444E-822.50047927
CGGAAGA2600.021.6405261
ATGCCGA3600.021.24831219
AGATCGG1151.5952901E-719.56464825
TGCCGAG3800.019.5379220
TCTCGTA2900.019.39598838
TGCGGCA600.006509086618.75039932
GAGTGCG600.0065109818.74945441
AATGCCG4150.018.4322718
GCGGTTC4400.018.414125
AAGAGCG4300.018.3189561
CGGTTCA4300.018.3189566
AGAGCGG4300.018.3189562
CCGTGCA2850.018.15828128
TCGTATG3100.018.14463240