Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378626.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 642900 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2989 | 0.4649245605848499 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2374 | 0.3692642712708042 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GGCGGTC | 350 | 0.0 | 42.428425 | 35 |
| CGTCATA | 375 | 0.0 | 41.999855 | 24 |
| TAAGCCG | 370 | 0.0 | 41.959316 | 13 |
| TCGGTAT | 350 | 0.0 | 41.78557 | 23 |
| CGGTATT | 355 | 0.0 | 41.197037 | 24 |
| GCCGATG | 385 | 0.0 | 40.90895 | 16 |
| ATTCGGT | 360 | 0.0 | 40.62486 | 21 |
| AATTCGG | 360 | 0.0 | 40.62486 | 20 |
| TTCGGTA | 360 | 0.0 | 40.62486 | 22 |
| GACGTCA | 390 | 0.0 | 40.384476 | 22 |
| TGACGTC | 390 | 0.0 | 40.384476 | 21 |
| GAATTCG | 365 | 0.0 | 40.068356 | 19 |
| TCGGGGA | 360 | 0.0 | 39.99986 | 14 |
| CGATGAC | 400 | 0.0 | 39.93736 | 18 |
| AGCCGAT | 395 | 0.0 | 39.30366 | 15 |
| GCGGTCT | 380 | 0.0 | 39.07881 | 36 |
| AGGCGGT | 380 | 0.0 | 39.07881 | 34 |
| GATTCGG | 75 | 0.0 | 38.999863 | 11 |
| AAGCCGA | 400 | 0.0 | 38.812363 | 14 |
| TCCTCGG | 315 | 0.0 | 38.571293 | 11 |