FastQCFastQC Report
Mon 6 Jun 2016
ERR1379096.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379096.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1321656
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTATGATCTCGTATGCCGTC25570.19346940504942284Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTATGATCTCGTATGCC23860.18053109129758424Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3300.032.7265343
ATGCCGT3750.029.39933244
CTCGTAT5350.021.44810942
TGCCGTC5200.021.20144345
TCGTATG5600.020.89238443
TCGGAAG3100.020.3213528
TCTCGTA5650.020.30927541
CGTCTAT5800.020.17348332
CCGTCTA5950.020.0430831
CGTATGC5750.019.56477444
CGGAAGA6700.019.4993061
ACCGTCT6100.019.17989330
AGACCGT6050.018.96579228
GACCGTC6200.018.87053929
ATCGGAA3450.018.2563127
GTATGCC6550.018.20569445
GAGCGGT9900.018.1972433
AGCGGTT9800.018.1531414
TGCCGAG9750.017.76479320
CGGTTCA10050.017.6982216