FastQCFastQC Report
Mon 6 Jun 2016
ERR1379024.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379024.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences963375
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT552.748493E-936.81699442
CGTATGC606.4319465E-933.74891344
TCTCGTA702.8861905E-828.92763741
ACCGGAT803.3942342E-928.12409230
TCGTATG755.638867E-826.99912843
GACCGGA957.421477E-1026.0517929
GAGCGGT901.1888915E-825.0030846
CCGGATC952.1153028E-823.68344731
AGAGCGG1003.6379788E-822.5027775
AGCGGTT1003.6419806E-822.5004437
GAGACCG1056.107257E-821.4278827
ATGCCGA955.5315286E-721.31510222
AGACCGG1201.1050361E-820.62433428
ACACCGG550.0039332720.457075
GCGGTTC1109.9778845E-820.4549478
CGGTTCA1109.9833414E-820.4538849
CGGAAGC807.563252E-519.68686525
ATCTCGT1151.5952173E-719.56458740
AATGCCG1051.4455181E-619.28509121
CCGAGAC1051.4455181E-619.28509125