Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378946.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 780552 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACGGAATCTCGTATGCC | 8350 | 1.069755762588527 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 4260 | 0.545767610614027 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 874 | 0.11197204029968535 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGGACGG | 1045 | 0.0 | 38.108856 | 32 |
| CCGGACG | 1050 | 0.0 | 37.927383 | 31 |
| GGACGGA | 1060 | 0.0 | 37.781837 | 33 |
| ACCGGAC | 1060 | 0.0 | 37.56958 | 30 |
| GACGGAA | 1060 | 0.0 | 37.56958 | 34 |
| TCGTATG | 1055 | 0.0 | 37.321106 | 43 |
| TCTCGTA | 1065 | 0.0 | 36.970673 | 41 |
| ATCTCGT | 1060 | 0.0 | 36.932808 | 40 |
| AGACCGG | 1085 | 0.0 | 36.911285 | 28 |
| GACCGGA | 1080 | 0.0 | 36.873844 | 29 |
| CGGAATC | 1070 | 0.0 | 36.797913 | 36 |
| CGTATGC | 1075 | 0.0 | 36.62676 | 44 |
| GAGACCG | 1105 | 0.0 | 36.446823 | 27 |
| CTCGTAT | 1085 | 0.0 | 36.289185 | 42 |
| AATCTCG | 1085 | 0.0 | 35.87445 | 39 |
| GTATGCC | 1095 | 0.0 | 35.752308 | 45 |
| CGAGACC | 1155 | 0.0 | 35.063835 | 26 |
| ACGGAAT | 1170 | 0.0 | 33.845093 | 35 |
| GAATCTC | 1205 | 0.0 | 32.30189 | 38 |
| AGATCGG | 610 | 0.0 | 30.244953 | 17 |