Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379205.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 389821 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTCTAATCTCGTATGCC | 2581 | 0.6620987581479705 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 335 | 0.0 | 43.655968 | 42 |
| GACCGGT | 335 | 0.0 | 43.655968 | 29 |
| TCTCGTA | 340 | 0.0 | 43.01397 | 41 |
| TCGTATG | 350 | 0.0 | 42.427845 | 43 |
| ATCTCGT | 345 | 0.0 | 42.39058 | 40 |
| ACCGGTT | 345 | 0.0 | 42.39058 | 30 |
| CGTATGC | 345 | 0.0 | 42.39058 | 44 |
| CGGTTCT | 345 | 0.0 | 42.39058 | 32 |
| AGACCGG | 345 | 0.0 | 42.39058 | 28 |
| CCGGTTC | 350 | 0.0 | 41.785 | 31 |
| GAGACCG | 360 | 0.0 | 40.624302 | 27 |
| GGTTCTA | 365 | 0.0 | 40.067806 | 33 |
| AATCTCG | 375 | 0.0 | 39.599323 | 39 |
| GTATGCC | 370 | 0.0 | 39.526352 | 45 |
| CCGAGAC | 370 | 0.0 | 38.918255 | 25 |
| GCGGTTC | 400 | 0.0 | 37.124367 | 8 |
| CGGTTCA | 400 | 0.0 | 37.124367 | 9 |
| GTTCTAA | 395 | 0.0 | 37.024685 | 34 |
| AGAGCGG | 415 | 0.0 | 36.32934 | 5 |
| GAGCGGT | 415 | 0.0 | 36.32468 | 6 |