Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378837.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1019393 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3153 | 0.30930171190110195 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCTAATATCTCGTATGCC | 2713 | 0.26613877081753556 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCTAATATCTCGTATGCCGTC | 2497 | 0.2449496906492393 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 355 | 0.0 | 38.0251 | 43 |
| ATGCCGT | 370 | 0.0 | 37.091602 | 44 |
| TGCCGTC | 430 | 0.0 | 32.439243 | 45 |
| AGATCGG | 465 | 0.0 | 28.06225 | 25 |
| GATCGGA | 480 | 0.0 | 26.713974 | 26 |
| ATCGGAA | 490 | 0.0 | 26.16879 | 27 |
| TCGGAAG | 530 | 0.0 | 25.470894 | 28 |
| ATGCCGA | 1115 | 0.0 | 24.213293 | 19 |
| AATGCCG | 1115 | 0.0 | 24.210917 | 18 |
| TGCCGAG | 1115 | 0.0 | 24.011515 | 20 |
| CGCCTAA | 605 | 0.0 | 22.686348 | 29 |
| CTCGTAT | 610 | 0.0 | 22.498186 | 39 |
| GAATGCC | 1225 | 0.0 | 22.220516 | 17 |
| CCGCCTA | 620 | 0.0 | 22.136396 | 28 |
| TCTCGTA | 635 | 0.0 | 21.966732 | 38 |
| TCGTATG | 635 | 0.0 | 21.966732 | 40 |
| CGTATGC | 615 | 0.0 | 21.949448 | 41 |
| CCGAGAT | 580 | 0.0 | 21.722385 | 22 |
| GCCGAGA | 1240 | 0.0 | 21.228127 | 21 |
| ATCTCGT | 660 | 0.0 | 21.135695 | 37 |