FastQCFastQC Report
Mon 6 Jun 2016
ERR1379242.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379242.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1056587
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGACG602.467766E-422.49940920
GACGGAA855.0327217E-621.17591323
GCCGAAG600.006511145718.74950644
AGCGATT850.002565431915.88193422
CGGGGTT2151.5279511E-1015.701721
CCGGCTA1108.5892447E-414.31780516
ACGGAAG1504.2709235E-513.49964424
CGGCTAA1352.6522175E-413.33298317
GCCGAGA1800.0029541669.99973842
ACCACGC2606.681601E-59.5189819
AGCCGAG1900.00461887859.47343541
CTCCCGG1900.00461887859.47343543
GAGCCGA1900.00461887859.47343540
CCACGCC2658.228257E-59.33937710
GTTAGCC1950.00572077149.23052615
ACTAGAC3552.6705711E-68.87300619
CACCACG2606.9972494E-48.6536198
TCGCTTG3003.1618745E-48.24978315
GCGTGGT2550.00563960157.9428474
GGCGTGG2850.00173243397.8963983