Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378949.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 841267 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATTTTATCTCGTATGCC | 7315 | 0.8695218046113778 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 3387 | 0.4026070201255963 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATCTCG | 795 | 0.0 | 36.511074 | 39 |
| TCTCGTA | 800 | 0.0 | 36.28288 | 41 |
| CGCATTT | 855 | 0.0 | 36.05211 | 32 |
| CTCGTAT | 800 | 0.0 | 36.003757 | 42 |
| ATCTCGT | 810 | 0.0 | 35.83494 | 40 |
| GACCGCA | 850 | 0.0 | 35.734776 | 29 |
| AGACCGC | 850 | 0.0 | 35.734776 | 28 |
| GAGACCG | 860 | 0.0 | 35.58088 | 27 |
| CCGCATT | 875 | 0.0 | 34.97092 | 31 |
| TCGTATG | 825 | 0.0 | 34.91066 | 43 |
| ACCGCAT | 880 | 0.0 | 34.77222 | 30 |
| CGTATGC | 830 | 0.0 | 34.700356 | 44 |
| GTATGCC | 845 | 0.0 | 33.551804 | 45 |
| AGATCGG | 565 | 0.0 | 32.654392 | 17 |
| GATCGGA | 590 | 0.0 | 31.270733 | 18 |
| ATCGGAA | 585 | 0.0 | 31.153393 | 19 |
| CGAGATC | 610 | 0.0 | 30.983158 | 15 |
| TCGGAAG | 595 | 0.0 | 30.629807 | 20 |
| CGAGACC | 1035 | 0.0 | 29.564785 | 26 |
| GAGATCG | 640 | 0.0 | 29.179264 | 16 |