Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378887.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 899126 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3732 | 0.41506974550841597 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAAGATCTCGTATGCCGTC | 2229 | 0.247907412309287 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAAGATCTCGTATGCC | 2183 | 0.24279133291663238 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 195 | 0.0 | 38.0733 | 43 |
| AGATCGG | 600 | 0.0 | 33.36811 | 25 |
| ATCGGAA | 630 | 0.0 | 31.779152 | 27 |
| GATCGGA | 640 | 0.0 | 31.282606 | 26 |
| TCGGAAG | 665 | 0.0 | 31.121393 | 28 |
| ATGCCGT | 235 | 0.0 | 30.635382 | 44 |
| CCGAGAT | 720 | 0.0 | 27.80676 | 22 |
| GAGATCG | 755 | 0.0 | 26.219753 | 24 |
| TGCCGTC | 275 | 0.0 | 26.179327 | 45 |
| CGAGATC | 770 | 0.0 | 25.708979 | 23 |
| AATGCCG | 1135 | 0.0 | 24.37823 | 18 |
| TGCCGAG | 1175 | 0.0 | 23.739782 | 20 |
| TCTCGTA | 455 | 0.0 | 23.734005 | 41 |
| ATGCCGA | 1175 | 0.0 | 23.548332 | 19 |
| CTCGTAT | 460 | 0.0 | 23.476025 | 42 |
| CGTATGC | 465 | 0.0 | 23.223597 | 44 |
| TCGTATG | 465 | 0.0 | 23.223597 | 43 |
| CGGAAGA | 905 | 0.0 | 22.86948 | 29 |
| ACCGGCT | 465 | 0.0 | 22.25471 | 30 |
| GAATGCC | 1265 | 0.0 | 22.228615 | 17 |