FastQCFastQC Report
Mon 6 Jun 2016
ERR1378716.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378716.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences791641
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGGTA453.8380676E-1045.00012630
CCGGTAT501.0804797E-940.49755531
GACCGGT552.746674E-936.81828729
AGACCGG606.4264896E-933.75009528
ATCTCGT651.4024408E-831.1539340
CGGTATC651.4031684E-831.15196432
GCGGTTC702.8838258E-828.9286548
GAGACCG702.8838258E-828.92865427
CGTATGC702.8854629E-828.92682644
AGCGGTT755.6343197E-827.0000767
TATCTCG755.6343197E-827.00007639
CTCGTAT755.6377758E-826.9983742
CGGTTCA801.0535405E-725.3109729
TCTCGTA801.0535405E-725.31097241
GAGCGGT851.8897481E-723.8266096
CCGAGAC851.89204E-723.82359725
TTCACGC500.002264785822.49864214
TCGTATG903.286168E-722.49864243
ATGCCGA955.5304554E-721.31450322
AATGCCG1009.0528556E-720.24877721