FastQCFastQC Report
Mon 6 Jun 2016
ERR1390691.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390691.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences942927
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGAT500.002233814422.552566
TGCCCCG706.9998275E-419.27848831
ACCACGC2300.017.6067669
CCACGCC2550.016.76286710
AGCGCTC1104.6404442E-516.3618437
CGTGAGC1602.8926297E-715.5007631
CACGCCC1754.875801E-815.42442611
CGCCACC1209.557186E-515.035045
CGGAGGT1209.780388E-514.99437933
CACCACG2601.0913936E-1114.7099278
AAAGCGC1402.1805601E-514.49807555
AGGCGGA1901.3370482E-714.20520130
GCGGAGG1200.001660703113.12008132
AAGCGCT1555.6819044E-513.0950356
GGAGGCG1902.068875E-613.02143428
GAGCCAC5250.012.4562794
TCGGCTC2207.949402E-712.26812822
GGCGGAG1651.0461701E-412.26812831
CGGCTCA2207.949402E-712.26812823
ACGCCCA1506.4674154E-411.99550212