Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378998.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 770745 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 5829 | 0.7562812603390227 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCAGTATCTCGTATGCCGTC | 3106 | 0.40298672064041935 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCAGTATCTCGTATGCC | 1921 | 0.24923937229563603 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGGAAG | 805 | 0.0 | 36.613113 | 28 |
| ATCGGAA | 780 | 0.0 | 36.34437 | 27 |
| AGATCGG | 805 | 0.0 | 35.774643 | 25 |
| GATCGGA | 805 | 0.0 | 35.774643 | 26 |
| TATGCCG | 385 | 0.0 | 35.647602 | 43 |
| TGCCGTC | 400 | 0.0 | 33.748344 | 45 |
| ATGCCGT | 410 | 0.0 | 32.925213 | 44 |
| CCGAGAT | 885 | 0.0 | 32.540775 | 22 |
| CGAGATC | 925 | 0.0 | 31.133612 | 23 |
| GAGATCG | 935 | 0.0 | 30.800632 | 24 |
| ATGCCGA | 1435 | 0.0 | 30.730202 | 19 |
| TGCCGAG | 1445 | 0.0 | 30.517536 | 20 |
| AATGCCG | 1455 | 0.0 | 30.307795 | 18 |
| CGGAAGA | 1025 | 0.0 | 28.754686 | 29 |
| GAATGCC | 1530 | 0.0 | 28.675064 | 17 |
| GCCGAGA | 1530 | 0.0 | 27.939806 | 21 |
| GGAATGC | 1650 | 0.0 | 26.998676 | 16 |
| AGGAATG | 1715 | 0.0 | 25.713026 | 15 |
| GAAGAGC | 1180 | 0.0 | 24.97759 | 31 |
| TCGTATG | 545 | 0.0 | 24.769428 | 40 |