Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378832.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1175960 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACATAATCTCGTATGCC | 3870 | 0.32909282628660835 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3297 | 0.28036667913874624 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAACATAATCTCGTATGCCGTC | 2910 | 0.24745739651008536 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 365 | 0.0 | 40.066296 | 43 |
| TGCCGTC | 400 | 0.0 | 37.685436 | 45 |
| ATGCCGT | 405 | 0.0 | 36.664658 | 44 |
| GATCGGA | 420 | 0.0 | 31.06312 | 26 |
| AGATCGG | 455 | 0.0 | 29.666182 | 25 |
| ATCGGAA | 455 | 0.0 | 28.67365 | 27 |
| TCGGAAG | 480 | 0.0 | 28.588533 | 28 |
| CCGAGAT | 575 | 0.0 | 23.083729 | 22 |
| TCTCGTA | 820 | 0.0 | 23.047518 | 41 |
| CGTATGC | 830 | 0.0 | 23.040907 | 44 |
| CGAACAT | 835 | 0.0 | 22.901962 | 32 |
| CTCGTAT | 830 | 0.0 | 22.769836 | 42 |
| AATGCCG | 1255 | 0.0 | 22.762836 | 18 |
| ACCGAAC | 850 | 0.0 | 22.495895 | 30 |
| CCGAACA | 855 | 0.0 | 22.366245 | 31 |
| TCGTATG | 855 | 0.0 | 22.104053 | 43 |
| GACCGAA | 855 | 0.0 | 22.101233 | 29 |
| GTATGCC | 870 | 0.0 | 21.981552 | 45 |
| ATGCCGA | 1305 | 0.0 | 21.893492 | 19 |
| ATCTCGT | 865 | 0.0 | 21.848513 | 40 |