FastQCFastQC Report
Mon 6 Jun 2016
ERR1379389.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379389.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences599002
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACATGATCTCGTATGCC10790.18013295448095332Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT1400.040.1780540
ACCGGAC1350.039.9994830
CCGGACA1350.039.9994831
CTCGTAT1400.038.57092742
GACCGGA1400.038.57092729
TCGTATG1400.038.57092743
CGGACAT1450.037.24089432
CGTATGC1450.037.24089444
AGACCGG1450.037.24089428
TGCGAAC250.002105576536.0025374
TCTCGTA1500.035.9995341
GAGACCG1650.032.7268527
GTATGCC1700.031.76429445
AATGCCG1750.030.8567421
CCGAGAC1750.030.8567425
CGGAAGA1800.030.0046181
AGGTCGT300.005145640629.99960928
AGAGCGG1950.028.8481865
AGCGGTT1950.027.6919487
TGCCGAG1950.027.69194823