Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379107.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1176575 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCC | 1808 | 0.1536663621103627 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCCGTC | 1621 | 0.13777277266642585 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 200 | 0.0 | 30.37345 | 43 |
| ATGCCGT | 260 | 0.0 | 23.364193 | 44 |
| CTCGTAT | 330 | 0.0 | 21.81707 | 42 |
| CGGAAGA | 375 | 0.0 | 21.024843 | 1 |
| TCGTATG | 360 | 0.0 | 20.623947 | 43 |
| CGTATGC | 355 | 0.0 | 20.280657 | 44 |
| TCTCGTA | 355 | 0.0 | 20.280657 | 41 |
| TGCCGTC | 315 | 0.0 | 19.28473 | 45 |
| ATCTCGT | 420 | 0.0 | 18.213358 | 40 |
| ACCGAGT | 400 | 0.0 | 17.997551 | 30 |
| AGACCGA | 400 | 0.0 | 17.997551 | 28 |
| CGAGTGA | 405 | 0.0 | 17.778381 | 32 |
| GTATGCC | 450 | 0.0 | 16.499159 | 45 |
| CATCTCG | 465 | 0.0 | 16.450773 | 39 |
| CCGAGTG | 445 | 0.0 | 16.180326 | 31 |
| GAGACCG | 445 | 0.0 | 16.1762 | 27 |
| GACCGAG | 460 | 0.0 | 16.139109 | 29 |
| CGGTTCA | 490 | 0.0 | 15.161955 | 6 |
| CCGAGAC | 500 | 0.0 | 14.84735 | 25 |
| GAGCGGT | 520 | 0.0 | 14.720172 | 6 |