Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379187.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 217844 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCACATTATCTCGTATGCC | 847 | 0.3888103413451828 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GTATGCC | 105 | 0.0 | 45.009186 | 45 |
| AATGCCG | 105 | 0.0 | 44.99885 | 21 |
| ACCGCAC | 110 | 0.0 | 42.95345 | 30 |
| GAGCGGT | 110 | 0.0 | 42.95345 | 6 |
| CGCACAT | 110 | 0.0 | 42.95345 | 32 |
| ATGCCGA | 110 | 0.0 | 42.95345 | 22 |
| CCGCACA | 110 | 0.0 | 42.95345 | 31 |
| GACCGCA | 105 | 0.0 | 42.856052 | 29 |
| AGACCGC | 105 | 0.0 | 42.856052 | 28 |
| CGTATGC | 115 | 0.0 | 41.09534 | 44 |
| CTCGTAT | 115 | 0.0 | 41.08591 | 42 |
| GCGGTTC | 115 | 0.0 | 41.08591 | 8 |
| AAGAGCG | 115 | 0.0 | 41.08591 | 4 |
| AGCGGTT | 115 | 0.0 | 41.08591 | 7 |
| TCTCGTA | 115 | 0.0 | 41.08591 | 41 |
| CGGAAGA | 110 | 0.0 | 40.91744 | 1 |
| CCGAGAC | 110 | 0.0 | 40.908047 | 25 |
| TGCCGAG | 110 | 0.0 | 40.908047 | 23 |
| CGGTTCA | 120 | 0.0 | 39.373993 | 9 |
| AGAGCGG | 120 | 0.0 | 39.373993 | 5 |