Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378842.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 818591 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2473 | 0.30210446975351546 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTCATATCTCGTATGCCGTC | 1838 | 0.22453215341971755 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTCATATCTCGTATGCC | 1677 | 0.20486421179807743 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 245 | 0.0 | 35.813606 | 43 |
| TGCCGTC | 265 | 0.0 | 33.110687 | 45 |
| ATGCCGT | 275 | 0.0 | 32.724785 | 44 |
| GATCGGA | 360 | 0.0 | 31.243807 | 26 |
| ATCGGAA | 370 | 0.0 | 30.39938 | 27 |
| TCGGAAG | 415 | 0.0 | 28.731 | 28 |
| AGATCGG | 400 | 0.0 | 26.996298 | 25 |
| CCGAGAT | 400 | 0.0 | 26.996298 | 22 |
| AATGCCG | 805 | 0.0 | 25.429743 | 18 |
| CGAGATC | 445 | 0.0 | 24.771885 | 23 |
| TGCCGAG | 850 | 0.0 | 24.084932 | 20 |
| ATGCCGA | 855 | 0.0 | 23.944086 | 19 |
| GAGATCG | 475 | 0.0 | 22.733725 | 24 |
| CGGAAGA | 535 | 0.0 | 22.286663 | 29 |
| GAGCGGT | 1000 | 0.0 | 21.61817 | 3 |
| GAATGCC | 950 | 0.0 | 21.54836 | 17 |
| GCCGAGA | 925 | 0.0 | 21.402468 | 21 |
| GACCGGT | 410 | 0.0 | 21.398197 | 26 |
| GCGGTTC | 990 | 0.0 | 21.377682 | 5 |
| AGCGGTT | 1005 | 0.0 | 21.286545 | 4 |