FastQCFastQC Report
Mon 6 Jun 2016
ERR1378672.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378672.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1300066
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCGAC250.00210813835.9967716
CTCGTAT1400.035.3553342
CGTATCC1400.035.3553332
CGTATGC1450.034.13749344
GACCGTA1450.034.1348729
TCTCGTA1550.031.93384441
ACCGTAT1550.031.93261730
CGGTTCA1750.030.8543749
TCGTATG1700.030.43961543
ATGCCGA1850.030.40267622
CCGTATC1650.029.99846331
GCGGTTC1800.029.9973078
AATGCCG1900.029.60260821
AGAGCGG1850.029.2000475
AGCGGTT1900.028.4185037
ATCTCGT1850.027.97153940
CCGAGAC1800.027.4975325
TGCCGAG2100.026.78331223
GAGCGGT2050.026.351266
GAGACCG1950.025.38233827