FastQCFastQC Report
Mon 6 Jun 2016
ERR1379310.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379310.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences245345
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGGAATCATCTCGTATGCC2510.10230491756506145Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTTCA253.8823266E-544.998989
AATGCCG302.1588348E-644.9989821
GCGGTTC301.1374576E-437.4991538
TGCCGAG301.1374576E-437.49915323
ATGCCGA401.5558275E-533.74923722
CGGAAGA352.8076014E-432.155241
ATCTCGT352.8143296E-432.14212840
CGTATGC352.8143296E-432.14212844
CTCGTAT352.8143296E-432.14212842
AGCGGTT352.8143296E-432.1421287
GAGACCG352.8143296E-432.14212827
TCTCGTA352.8143296E-432.14212841
CCGAGAC352.8143296E-432.14212825
TCGTATG352.8143296E-432.14212843
GACCGGG406.153027E-428.12436529
GAGCGGT406.153027E-428.1243656
AGACCGG406.153027E-428.12436528
AAGAGCG450.001222512725.004534
CATCTCG450.001223967124.99943439
GTATGCC450.001223967124.99943445