FastQCFastQC Report
Mon 6 Jun 2016
ERR1378773.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378773.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1103243
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATGTAATCTCGTATGCCGTC13500.12236651399555674Illumina Paired End PCR Primer 2 (96% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1950.041.5352443
ATGCCGT2050.038.41165544
TGCCGTC2050.038.41165545
AGACCGA2550.030.88135525
GACCGAA2600.030.28748526
TCGTATG2600.030.28611440
CTCGTAT2700.029.16572839
TCTCGTA2700.029.16572838
ATCTCGT2900.027.93013437
ACCGAAT2850.027.63068827
GAGACCG2900.027.15429724
CGTATGC2900.027.15306741
CGGTTCA4000.027.0089236
CCGAATG2950.026.69405428
CGAATGT3050.026.5565229
GCGGTTC4250.025.4201645
AGCGGTT4400.025.06514
CCGAGAC3150.024.99806222
ATGCCGA4050.024.99806219
AATCTCG3350.024.84994736