Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378875.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 997026 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3824 | 0.38354064989278114 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACGTTATCTCGTATGCCGTC | 2611 | 0.26187882763338166 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACGTTATCTCGTATGCC | 2147 | 0.21534042241626597 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 315 | 0.0 | 39.279583 | 43 |
| ATGCCGT | 355 | 0.0 | 34.853714 | 44 |
| GATCGGA | 475 | 0.0 | 34.571815 | 26 |
| ATCGGAA | 490 | 0.0 | 33.513496 | 27 |
| TGCCGTC | 380 | 0.0 | 33.15272 | 45 |
| TCGGAAG | 525 | 0.0 | 31.70934 | 28 |
| AGATCGG | 520 | 0.0 | 31.581612 | 25 |
| TGCCGAG | 1125 | 0.0 | 26.595848 | 20 |
| ATGCCGA | 1135 | 0.0 | 26.361526 | 19 |
| AATGCCG | 1140 | 0.0 | 26.244589 | 18 |
| CCGAGAT | 645 | 0.0 | 25.809925 | 22 |
| CGAGATC | 645 | 0.0 | 25.809925 | 23 |
| CGTACGT | 535 | 0.0 | 23.547728 | 29 |
| CCGTACG | 545 | 0.0 | 23.528439 | 28 |
| GACCGTA | 545 | 0.0 | 23.527258 | 26 |
| GCCGAGA | 1260 | 0.0 | 23.389208 | 21 |
| GAATGCC | 1300 | 0.0 | 23.360567 | 17 |
| CGTATGC | 530 | 0.0 | 23.345413 | 41 |
| ACCGTAC | 545 | 0.0 | 23.114498 | 27 |
| TCGTATG | 550 | 0.0 | 22.905516 | 40 |