Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378936.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1374383 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGGCGATCTCGTATGCC | 13284 | 0.9665428050259643 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 7324 | 0.5328936693774589 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1661 | 0.12085423058928989 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGGCGAT | 1755 | 0.0 | 37.30727 | 35 |
| GGCGATC | 1755 | 0.0 | 37.05086 | 36 |
| CTCGTAT | 1750 | 0.0 | 36.900925 | 42 |
| ATCTCGT | 1755 | 0.0 | 36.794456 | 40 |
| TCTCGTA | 1760 | 0.0 | 36.563416 | 41 |
| CCGCAGG | 1810 | 0.0 | 36.546547 | 31 |
| CGCAGGC | 1825 | 0.0 | 36.369453 | 32 |
| GTATGCC | 1760 | 0.0 | 36.307728 | 45 |
| CAGGCGA | 1810 | 0.0 | 36.29793 | 34 |
| CGTATGC | 1770 | 0.0 | 36.22972 | 44 |
| GCAGGCG | 1855 | 0.0 | 35.781265 | 33 |
| TCGTATG | 1800 | 0.0 | 35.750896 | 43 |
| AGACCGC | 1855 | 0.0 | 35.659973 | 28 |
| GACCGCA | 1875 | 0.0 | 35.279602 | 29 |
| GAGACCG | 1900 | 0.0 | 34.815395 | 27 |
| GCGATCT | 1865 | 0.0 | 34.50363 | 37 |
| ACCGCAG | 1930 | 0.0 | 34.274223 | 30 |
| GATCTCG | 1945 | 0.0 | 33.200138 | 39 |
| CGAGACC | 2065 | 0.0 | 32.251453 | 26 |
| AGATCGG | 1110 | 0.0 | 31.621264 | 17 |