FastQCFastQC Report
Mon 6 Jun 2016
ERR1378675.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378675.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1348512
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT900.034.99870342
GCGGTTC1100.030.6784068
CGTATGC1050.029.99888644
ACCGCTT1100.028.6342430
CCGCTTA1200.026.24902731
TCGTATG1251.8189894E-1225.19906443
CGCTTAG1251.8189894E-1225.19906432
GACCGCT1251.8189894E-1225.19813229
AGACCGC1350.024.99814628
TCTCGTA1301.8189894E-1224.22987241
TATCTCG1353.6379788E-1223.33246839
AGAGCGG1459.094947E-1221.7330045
AGCGGTT1459.094947E-1221.7217227
TGCCGAG1501.4551915E-1120.99844423
GAGCGGT1656.002665E-1119.0986986
CGGTTCA1656.002665E-1119.0887859
ATGCCGA1656.002665E-1119.08878522
ACGCCCG951.3173709E-518.94526112
ATCTCGT1709.276846E-1118.52872540
AATGCCG1709.276846E-1118.52735121