Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379100.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 704863 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCC | 3872 | 0.5493266067306697 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCCGTC | 3630 | 0.5149936938100028 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 830 | 0.11775337902542764 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 515 | 0.0 | 36.69469 | 43 |
| ATGCCGT | 510 | 0.0 | 36.61332 | 44 |
| TGCCGTC | 575 | 0.0 | 32.474422 | 45 |
| TGAACCG | 65 | 1.5248972E-5 | 24.226185 | 10 |
| CGGAAGA | 730 | 0.0 | 24.074118 | 1 |
| GTATGCC | 860 | 0.0 | 21.71255 | 42 |
| CTCGTAT | 875 | 0.0 | 21.597448 | 39 |
| TCTCGTA | 880 | 0.0 | 21.47321 | 38 |
| CGTATGC | 875 | 0.0 | 21.340336 | 41 |
| AACCGCT | 75 | 4.6061003E-5 | 20.996027 | 12 |
| TCGTATG | 890 | 0.0 | 20.980665 | 40 |
| CGAGACA | 925 | 0.0 | 20.916445 | 29 |
| GAAGAGC | 840 | 0.0 | 20.90967 | 3 |
| AGACCGA | 930 | 0.0 | 20.560627 | 25 |
| ACCGAGA | 945 | 0.0 | 20.472317 | 27 |
| GACCGAG | 950 | 0.0 | 20.127771 | 26 |
| ATCTCGT | 945 | 0.0 | 19.999054 | 37 |
| GAGACCG | 970 | 0.0 | 19.712765 | 24 |
| CATCTCG | 980 | 0.0 | 19.514383 | 36 |
| CGGTTCA | 1235 | 0.0 | 19.142231 | 6 |