FastQCFastQC Report
Mon 6 Jun 2016
ERR1379373.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379373.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences703759
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCC15310.21754606335407434Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGATA2400.041.2490931
CGGATAC2400.041.2490932
TACGATC2350.041.17222636
CTCGTAT2500.039.60193642
GATACGA2450.039.48892234
GGATACG2550.038.82267433
ACCGGAT2650.038.206730
ATCTCGT2600.038.07878540
TCTCGTA2600.038.07878541
CGTATGC2550.037.94573244
GACCGGA2650.037.35766229
TCGTATG2600.037.21335643
AGACCGG2800.036.15991628
ACGATCT2750.035.18353737
ATACGAT2750.035.18353735
CGGAAGA2800.034.5552641
GCGGTTC3000.032.999278
GAGCGGT3000.032.999276
AGAGCGG3000.032.999275
GAGACCG3200.032.34303727