Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379374.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 793156 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGCGATCTCGTATGCC | 1834 | 0.23122815688212658 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGAT | 175 | 0.0 | 42.426315 | 29 |
| ACCGATA | 180 | 0.0 | 41.247803 | 30 |
| CCGATAG | 185 | 0.0 | 40.133 | 31 |
| TAGCGAT | 185 | 0.0 | 40.133 | 35 |
| TCTCGTA | 190 | 0.0 | 37.895107 | 41 |
| ATAGCGA | 200 | 0.0 | 37.123024 | 34 |
| TCGTATG | 200 | 0.0 | 37.123024 | 43 |
| CTCGTAT | 195 | 0.0 | 36.92344 | 42 |
| CGTATGC | 205 | 0.0 | 36.217583 | 44 |
| AGACCGA | 205 | 0.0 | 36.217583 | 28 |
| CGATAGC | 205 | 0.0 | 36.217583 | 32 |
| GAGACCG | 225 | 0.0 | 33.99819 | 27 |
| GCGGTTC | 220 | 0.0 | 33.748203 | 8 |
| GATAGCG | 220 | 0.0 | 33.748203 | 33 |
| AGAGCGG | 225 | 0.0 | 33.008648 | 5 |
| AGCGGTT | 225 | 0.0 | 32.998245 | 7 |
| CGGTTCA | 240 | 0.0 | 31.873302 | 9 |
| CGGAAGA | 235 | 0.0 | 31.610003 | 1 |
| AAGAGCG | 235 | 0.0 | 31.604023 | 4 |
| GAGCGGT | 235 | 0.0 | 31.598045 | 6 |