Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378593.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 623646 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2519 | 0.40391504154600527 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1936 | 0.3104325210135237 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACGTCA | 245 | 0.0 | 41.322926 | 22 |
| TGACGTC | 245 | 0.0 | 41.322926 | 21 |
| TAAGCCG | 245 | 0.0 | 41.322926 | 13 |
| CGTCATA | 250 | 0.0 | 40.496468 | 24 |
| CTCGTAT | 45 | 1.9274012E-8 | 39.99651 | 39 |
| AGCCGAT | 255 | 0.0 | 39.702415 | 15 |
| GATGACG | 255 | 0.0 | 39.702415 | 19 |
| ATGACGT | 260 | 0.0 | 38.938908 | 20 |
| ACGTCAT | 260 | 0.0 | 38.938908 | 23 |
| ATTCGGT | 245 | 0.0 | 38.56806 | 21 |
| CGGTATT | 255 | 0.0 | 37.937866 | 24 |
| TCGGTAT | 255 | 0.0 | 37.937866 | 23 |
| GAATTCG | 250 | 0.0 | 37.7967 | 19 |
| GCCGATG | 270 | 0.0 | 37.496727 | 16 |
| AAGCCGA | 270 | 0.0 | 37.496727 | 14 |
| CTCGGGG | 230 | 0.0 | 37.17067 | 13 |
| TTCCTCG | 230 | 0.0 | 37.17067 | 10 |
| TTCGGTA | 255 | 0.0 | 37.055588 | 22 |
| CGTGTAC | 55 | 2.746674E-9 | 36.81497 | 29 |
| CCGATGA | 280 | 0.0 | 36.15756 | 17 |