FastQCFastQC Report
Mon 6 Jun 2016
ERR1390603.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390603.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83375
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC910.10914542728635683Illumina Paired End PCR Primer 2 (100% over 35bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACACATCTCGTATGCC850.10194902548725637Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG253.860254E-544.998817
GATCGGA253.860254E-544.998818
TCGGAAG253.860254E-544.998820
ATCGGAA301.1310407E-437.49919
CCGAGAT352.798576E-432.14214
GCGGTTC406.118852E-428.12425228
GAGATCG507.081686E-526.99927916
AAGAGCG450.001217221824.99933224
CGGTTCA450.001217221824.99933229
AGCGGTT450.001217221824.99933227
CGAGATC450.001217221824.99933215
GGTTCAG450.001217221824.99933230
AGAGCGG450.001217221824.99933225
CGGAAGA500.00224751522.499421
GAGCGGT550.00390705820.45399926
ATCTTCA800.001693240316.8745525
AATATCT1004.1103628E-415.7495792
ATATCTT1004.1103628E-415.7495793
TATCTTC1004.1103628E-415.7495794
ATATCCA900.003715819414.9995993