Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379339.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1116030 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGATAATCTCGTATGCC | 1386 | 0.12419020994059299 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGACCGT | 110 | 0.0 | 36.817924 | 28 |
| CGTAGAT | 105 | 0.0 | 36.428318 | 32 |
| GACCGTA | 115 | 0.0 | 35.217148 | 29 |
| CCGTAGA | 135 | 0.0 | 31.666445 | 31 |
| ACCGTAG | 130 | 0.0 | 31.15363 | 30 |
| TCTCGTA | 140 | 0.0 | 27.32124 | 41 |
| CGGAAGA | 150 | 0.0 | 27.002232 | 1 |
| CTCGTAT | 145 | 0.0 | 26.379126 | 42 |
| AGAGCGG | 155 | 0.0 | 26.130022 | 5 |
| CGGTTCA | 155 | 0.0 | 26.12885 | 9 |
| GCGGTTC | 165 | 0.0 | 25.90891 | 8 |
| CGTATGC | 150 | 0.0 | 25.49982 | 44 |
| TCGTATG | 150 | 0.0 | 25.49982 | 43 |
| GAGCGGT | 170 | 0.0 | 23.82443 | 6 |
| ATCTCGT | 165 | 0.0 | 23.181658 | 40 |
| AAGAGCG | 175 | 0.0 | 23.143732 | 4 |
| AGCGGTT | 185 | 0.0 | 21.891739 | 7 |
| CCGAGAC | 175 | 0.0 | 21.85699 | 25 |
| AATCTCG | 240 | 0.0 | 19.687363 | 39 |
| GAGACCG | 195 | 0.0 | 19.615248 | 27 |