Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1390786.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 404567 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 616 | 0.15226155371051026 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GCGCAAG | 25 | 0.0021081967 | 35.99061 | 39 |
| CACCCGG | 25 | 0.0021081967 | 35.99061 | 13 |
| AGATCGG | 105 | 0.0 | 29.992172 | 17 |
| CGTATGC | 30 | 0.005149929 | 29.992172 | 44 |
| ACCCGGC | 30 | 0.005149929 | 29.992172 | 14 |
| CGCAAGA | 30 | 0.005149929 | 29.992172 | 40 |
| TCGGAAG | 100 | 1.8189894E-12 | 29.242369 | 20 |
| ATCGGAA | 100 | 1.8189894E-12 | 29.242369 | 19 |
| GATCGGA | 110 | 5.456968E-12 | 26.583971 | 18 |
| GAGATCG | 120 | 1.6370905E-11 | 24.368639 | 16 |
| CGAGATC | 130 | 5.0931703E-11 | 22.494131 | 15 |
| CCTTCGT | 75 | 4.5413824E-5 | 21.030912 | 1 |
| CGTGAGC | 75 | 4.5413824E-5 | 21.030912 | 1 |
| CGGTTCA | 140 | 1.364242E-10 | 20.887405 | 29 |
| CCGAGAT | 140 | 1.364242E-10 | 20.887405 | 14 |
| CCCGGCC | 55 | 0.0039381445 | 20.44921 | 15 |
| GCGGTTC | 145 | 2.1827873E-10 | 20.167149 | 28 |
| CCGAGAC | 145 | 2.1827873E-10 | 20.167149 | 45 |
| CGGAAGA | 150 | 3.43789E-10 | 19.494911 | 21 |
| AGCGGTT | 155 | 5.329639E-10 | 18.866045 | 27 |