Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379191.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 511130 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCATGATCTCGTATGCC | 1304 | 0.25512100639758967 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 165 | 0.0 | 42.272087 | 44 |
| CTCGTAT | 165 | 0.0 | 42.272087 | 42 |
| GACCGTT | 175 | 0.0 | 41.14223 | 29 |
| AGACCGT | 180 | 0.0 | 39.99939 | 28 |
| ACCGTTC | 180 | 0.0 | 39.99939 | 30 |
| CGTTCAT | 175 | 0.0 | 39.856537 | 32 |
| GAGACCG | 175 | 0.0 | 39.856537 | 27 |
| CCGAGAC | 175 | 0.0 | 39.856537 | 25 |
| AATGCCG | 170 | 0.0 | 39.705276 | 21 |
| TCGTATG | 180 | 0.0 | 38.74941 | 43 |
| ATGCCGA | 175 | 0.0 | 38.570843 | 22 |
| GCGGTTC | 190 | 0.0 | 37.89416 | 8 |
| GAGCGGT | 190 | 0.0 | 37.89416 | 6 |
| TCTCGTA | 190 | 0.0 | 36.70997 | 41 |
| TGCCGAG | 190 | 0.0 | 36.70997 | 23 |
| CGGAAGA | 200 | 0.0 | 36.006496 | 1 |
| AGAGCGG | 200 | 0.0 | 36.002975 | 5 |
| GTATGCC | 195 | 0.0 | 35.768684 | 45 |
| CCGTTCA | 195 | 0.0 | 35.768684 | 31 |
| CGGTTCA | 205 | 0.0 | 35.121418 | 9 |