FastQCFastQC Report
Mon 6 Jun 2016
ERR1378834.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378834.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1343830
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT25050.18640750690191468Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGTTAATCTCGTATGCCGTC17700.1317130887091373Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGTTAATCTCGTATGCC16410.1221136602099968Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2050.034.02163343
TCGGAAG3700.026.14555728
GATCGGA3450.026.08290126
CGTATTG450.001227242224.99797445
ATGCCGT2900.024.04977444
ATCGGAA3750.023.9962727
TGCCGTC2950.023.64215345
AGATCGG3950.022.7812725
AATGCCG7700.021.62001618
CCGAGAT4350.021.20359822
TGCCGAG8000.021.09047120
ATGCCGA8200.020.85041819
CTCGTAT3500.019.92695639
AGAGCGG9000.019.02042
TCTCGTA3800.018.94442238
AGCGGTT8900.018.7216744
GAGCGGT8900.018.7216743
TCGTATG3750.018.59849240
ACCGAAG3750.018.59710927
CCGAAGT3900.018.45935628