FastQCFastQC Report
Mon 6 Jun 2016
ERR1379272.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379272.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467723
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT356.240447E-638.57133540
CTCGTAT356.240447E-638.57133542
TCTCGTA356.240447E-638.57133541
GAGACCG458.68542E-734.99991627
GACCGAA401.558621E-533.7499229
AGACCGA401.558621E-533.7499228
CCGAGAC551.1252996E-732.72719625
CGTATGC453.486521E-529.99992844
CACGGTA300.005144234329.99992817
ACCGAAA453.486521E-529.99992830
GCGGTTC507.149592E-526.9999378
CGGTTCA507.149592E-526.9999379
AATGCCG551.3665308E-424.54539721
ATGCCGA551.3665308E-424.54539722
CGAAAGA602.464515E-422.49994732
AGCGGTT602.464515E-422.4999477
GAGCGGT602.464515E-422.4999476
GATCTCG754.5952267E-520.99994939
TCGTATG654.233122E-420.7691843
CCGAAAG654.233122E-420.7691831