Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379157.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 530830 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGCATATCTCGTATGCC | 998 | 0.1880074600154475 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGTT | 90 | 0.0 | 42.495995 | 29 |
| CTCGTAT | 95 | 0.0 | 40.259365 | 42 |
| TATCTCG | 95 | 0.0 | 40.259365 | 39 |
| TCTCGTA | 95 | 0.0 | 40.259365 | 41 |
| TCGTATG | 95 | 0.0 | 40.259365 | 43 |
| CCGTTGC | 95 | 0.0 | 40.259365 | 31 |
| CGTATGC | 100 | 0.0 | 38.246395 | 44 |
| AGACCGT | 100 | 0.0 | 38.246395 | 28 |
| GCGGTTC | 95 | 0.0 | 37.898308 | 8 |
| CGGTTCA | 95 | 0.0 | 37.89117 | 9 |
| ACCGTTG | 105 | 0.0 | 36.42514 | 30 |
| GAGCGGT | 100 | 0.0 | 36.010178 | 6 |
| AGCGGTT | 100 | 0.0 | 36.00339 | 7 |
| CGTTGCA | 115 | 0.0 | 35.21407 | 32 |
| ATCTCGT | 110 | 0.0 | 34.76945 | 40 |
| TGCCGAG | 110 | 0.0 | 34.76945 | 23 |
| AAGAGCG | 105 | 0.0 | 34.301872 | 4 |
| CCGAGAC | 115 | 0.0 | 33.257732 | 25 |
| ATGCCGA | 115 | 0.0 | 33.257732 | 22 |
| AGAGCGG | 110 | 0.0 | 32.73961 | 5 |