Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379172.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 558292 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTACCATCTCGTATGCC | 1426 | 0.255421893919311 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTCGTAT | 170 | 0.0 | 41.02827 | 42 |
| TCTCGTA | 170 | 0.0 | 41.02827 | 41 |
| GCGGTTC | 185 | 0.0 | 40.13761 | 8 |
| GAGCGGT | 185 | 0.0 | 40.13761 | 6 |
| ATCTCGT | 175 | 0.0 | 39.856033 | 40 |
| CGTATGC | 175 | 0.0 | 39.856033 | 44 |
| GACCGAT | 175 | 0.0 | 39.856033 | 29 |
| ACCGATT | 180 | 0.0 | 38.74892 | 30 |
| CGATTAC | 180 | 0.0 | 38.74892 | 32 |
| GAGACCG | 175 | 0.0 | 38.570354 | 27 |
| TCGTATG | 185 | 0.0 | 37.701653 | 43 |
| AGAGCGG | 200 | 0.0 | 37.127293 | 5 |
| CGGTTCA | 195 | 0.0 | 36.92205 | 9 |
| CCGATTA | 190 | 0.0 | 36.709503 | 31 |
| CCGAGAC | 185 | 0.0 | 36.48547 | 25 |
| AGCGGTT | 205 | 0.0 | 36.22175 | 7 |
| AGACCGA | 195 | 0.0 | 35.768238 | 28 |
| AATGCCG | 200 | 0.0 | 34.87403 | 21 |
| ATGCCGA | 200 | 0.0 | 34.87403 | 22 |
| CATCTCG | 205 | 0.0 | 34.02344 | 39 |