FastQCFastQC Report
Mon 6 Jun 2016
ERR1379312.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379312.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences351150
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT253.8832193E-545.0039942
TCTCGTA253.8832193E-545.0039941
CGCAAGT253.8864873E-544.9975832
TCGTATG301.1377141E-437.50332343
GCGGTTC301.13866845E-437.4979828
AGACCGC301.13866845E-437.49798228
ATCTCGT352.81495E-432.14570640
ACCGCAA352.8173038E-432.1411330
GACCGCA352.8173038E-432.1411329
ATGCCGA352.8173038E-432.1411322
ACTGCGC300.00514380129.9983869
CGTATGC406.1543577E-428.12749144
AAGAGCG406.1543577E-428.1274914
AGCGGTT406.159487E-428.1234867
GAGACCG406.159487E-428.12348627
CCGAGAC406.159487E-428.12348625
CGCCACC709.281066E-725.7129025
CGGTTCA450.001225242524.9986579
AATGCCG500.002262208822.4987921
CCGCAAG500.002262208822.4987931