FastQCFastQC Report
Mon 6 Jun 2016
ERR1379349.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379349.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences818092
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTATCAATCTCGTATGCC16700.20413352043535446Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCTAT1950.043.84484531
CTCGTAT2050.041.70862242
ACCGCTA2100.040.7130730
TCTCGTA2100.040.7130741
GACCGCT2150.039.76625429
CGTATGC2200.038.8648544
TCGTATG2300.038.15336243
CGCTATC2250.037.99886332
AGACCGC2400.035.62393628
ATCTCGT2550.034.41073640
CCGAGAC2550.034.41073625
AGCGGTT2500.034.198987
CGGAAGA2550.033.5386621
GCGGTTC2550.033.528418
GAGACCG2650.032.26318427
GAGCGGT2650.032.2631846
CGGTTCA2800.030.5348039
AATGCCG2900.030.25771921
AGAGCGG2850.030.0046065
AAGAGCG3000.029.254494