FastQCFastQC Report
Mon 6 Jun 2016
ERR1378997.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378997.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1222701
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT56480.4619281410581982Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTCTATCTCGTATGCCGTC32920.26923998590006876Illumina Paired End PCR Primer 2 (97% over 35bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTCTATCTCGTATGCC14180.11597275212827994Illumina Paired End PCR Primer 2 (97% over 38bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA7700.035.94087227
GATCGGA7650.035.88166826
TATGCCG4400.034.26771543
TCGGAAG8400.033.74797428
AGATCGG8150.033.6803425
AATGCCG14350.030.41629418
ATGCCGT5000.030.15559244
ATGCCGA14600.029.89546619
TGCCGTC5100.029.56430645
TGCCGAG15250.028.91629820
GAGATCG9700.028.29842824
CCGAGAT9900.028.1812822
CGGAAGA10200.027.35130129
CGAGATC10050.027.3129123
GAATGCC16400.027.02581817
GCCGAGA16350.026.28390321
TCGTATG5750.026.21796440
CCGCTCT5750.026.21581828
GACCGCT5800.025.99088326
CGTATGC5900.025.55349341