Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379370.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 871466 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTGTAGATCTCGTATGCC | 1182 | 0.13563351869149226 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGGT | 165 | 0.0 | 42.272457 | 29 |
| CGGTGTA | 175 | 0.0 | 39.856888 | 32 |
| ACCGGTG | 180 | 0.0 | 38.749752 | 30 |
| CGTATGC | 180 | 0.0 | 38.749752 | 44 |
| CTCGTAT | 185 | 0.0 | 37.70246 | 42 |
| CCGGTGT | 185 | 0.0 | 37.70246 | 31 |
| TCGTATG | 190 | 0.0 | 36.71029 | 43 |
| TCTCGTA | 205 | 0.0 | 34.024174 | 41 |
| AGACCGG | 230 | 0.0 | 31.30415 | 28 |
| ATCTCGT | 225 | 0.0 | 30.9998 | 40 |
| CCGAGAC | 225 | 0.0 | 30.9998 | 25 |
| GAGCGGT | 250 | 0.0 | 30.599804 | 6 |
| GTATGCC | 230 | 0.0 | 30.325893 | 45 |
| GCGGTTC | 260 | 0.0 | 29.42289 | 8 |
| AAGAGCG | 255 | 0.0 | 29.119133 | 4 |
| GAGACCG | 240 | 0.0 | 29.062317 | 27 |
| GGTGTAG | 255 | 0.0 | 28.235117 | 33 |
| AGCGGTT | 265 | 0.0 | 28.01869 | 7 |
| CGGTTCA | 270 | 0.0 | 27.499825 | 9 |
| GTAGATC | 255 | 0.0 | 27.352768 | 36 |