FastQCFastQC Report
Mon 6 Jun 2016
ERR1378778.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378778.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences649978
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCATATATCTCGTATGCCGTC13270.20416075621021018Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCATATATCTCGTATGCC9980.15354365840074588Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1500.035.99796743
TGCCGTC1650.034.08898545
ATGCCGT1700.031.76291344
GACCGCC2250.024.9985926
CCGCCAT2250.024.9985928
CGCCATA2250.024.9985929
TCTCGTA2200.024.54407138
ACCGCCA2300.024.4551427
AGACCGC2350.023.9348225
ATCTCGT2350.022.97742837
CTCGTAT2400.022.49873239
TATCTCG2450.022.03957436
GAGACCG2600.021.63339624
CGTATGC2650.021.22521641
CGGGGTT855.005697E-621.1866861
GAGCGGT3850.021.045873
AAGAGCG3900.020.779251
AATGCCG3800.020.72251518
AGAGCGG3950.020.5130622
CGGTTCA3950.020.5114826