Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378647.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1273826 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3500 | 0.27476280119890784 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2874 | 0.22561951161304605 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AGCCGAT | 350 | 0.0 | 43.06711 | 15 |
| TCGGTAT | 450 | 0.0 | 40.99589 | 23 |
| GCGGTCT | 455 | 0.0 | 40.54538 | 36 |
| TTCGGTA | 455 | 0.0 | 40.54538 | 22 |
| CGTCATA | 380 | 0.0 | 40.25912 | 24 |
| ATTCGGT | 465 | 0.0 | 39.67344 | 21 |
| CGGTATT | 465 | 0.0 | 39.67344 | 24 |
| AGGCGGT | 480 | 0.0 | 38.433643 | 34 |
| ACGTCAT | 400 | 0.0 | 38.24616 | 23 |
| GACGTCA | 395 | 0.0 | 38.16073 | 22 |
| TGACGTC | 395 | 0.0 | 38.16073 | 21 |
| TAAGCCG | 390 | 0.0 | 38.0731 | 13 |
| TCGGGGA | 485 | 0.0 | 38.037422 | 14 |
| GGCGGTC | 485 | 0.0 | 38.037422 | 35 |
| CGGTCTC | 485 | 0.0 | 38.037422 | 37 |
| CGGGGAA | 495 | 0.0 | 37.268986 | 15 |
| AAGCCGA | 415 | 0.0 | 36.86377 | 14 |
| ATGACGT | 415 | 0.0 | 36.86377 | 20 |
| AATTCGG | 505 | 0.0 | 36.530987 | 20 |
| GAATTCG | 505 | 0.0 | 36.530987 | 19 |