FastQCFastQC Report
Mon 6 Jun 2016
ERR1379249.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379249.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences586142
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA601.546141E-1037.49900441
CGGAAGA552.73576E-936.8297731
ATGCCGA708.1308826E-1032.14200222
CTCGTAT751.7007551E-929.99920342
GAGACCG751.7007551E-929.99920327
AGACCGT751.7007551E-929.99920328
CCGAGAC751.7007551E-929.99920325
TCGTATG751.7007551E-929.99920343
ATCTCGT803.3887773E-928.12425240
GCGGTTC803.3887773E-928.1242528
GACCGTG803.3887773E-928.12425229
GAGCGGT803.3887773E-928.1242526
AAGAGCG755.6166755E-827.0061954
AGCGGTT856.4701453E-926.4698857
CGTATGC957.403287E-1026.05193944
AGAGCGG801.0513577E-725.3139865
ACCGTGG901.1888915E-824.99933630
CGGTTCA952.1114829E-823.6835829
GACTCCG602.4616814E-422.5051633
AATGCCG1003.637615E-822.49940321