FastQCFastQC Report
Mon 6 Jun 2016
ERR1390668.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390668.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences973126
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA654.884132E-727.68449818
CGTATGC551.3710913E-424.53727144
ATCGGAA851.8981882E-723.81680919
TCGGAAG851.8991341E-723.81558620
GACCGAA500.002268753522.492529
TCTCGTA500.002268753522.492541
AGATCGG855.043208E-621.17049617
TCGTATA654.2412456E-420.7665759
CCGAAGA550.00394371920.44772531
TCTTCGT908.1054295E-620.0406996
CGGCTGA807.450127E-519.725531
ATCTTCG951.29263135E-518.9859245
TGGGCGA951.3192808E-518.9410527
TCGTATG600.00652233818.74374843
GGGCGAC851.2072827E-418.52323328
GGCGACA851.2072827E-418.52323329
TTCGTAT1002.0483623E-517.9976988
CCGAGAT1253.843088E-717.99492314
GCGGTTC1002.051988E-517.99428
CTTCGTA901.8671315E-417.497767