Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378942.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1290312 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACAAACATCTCGTATGCC | 7178 | 0.5562995616564056 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 3560 | 0.2759022623985517 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGACAA | 1030 | 0.0 | 37.354046 | 31 |
| CTCGTAT | 1005 | 0.0 | 36.93998 | 42 |
| TCTCGTA | 1020 | 0.0 | 36.396744 | 41 |
| TCGTATG | 1020 | 0.0 | 36.396744 | 43 |
| CGTATGC | 1035 | 0.0 | 36.30403 | 44 |
| GACCGAC | 1055 | 0.0 | 36.042347 | 29 |
| CGACAAA | 1070 | 0.0 | 35.537075 | 32 |
| AGACCGA | 1080 | 0.0 | 35.416363 | 28 |
| GAGACCG | 1090 | 0.0 | 35.091442 | 27 |
| ACCGACA | 1085 | 0.0 | 35.04578 | 30 |
| GTATGCC | 1080 | 0.0 | 34.791367 | 45 |
| ATCTCGT | 1070 | 0.0 | 34.69596 | 40 |
| CATCTCG | 1085 | 0.0 | 34.423668 | 39 |
| AGATCGG | 570 | 0.0 | 31.183945 | 17 |
| CGAGACC | 1250 | 0.0 | 30.959732 | 26 |
| GATCGGA | 585 | 0.0 | 30.384356 | 18 |
| ATCGGAA | 600 | 0.0 | 29.624744 | 19 |
| TCGGAAG | 615 | 0.0 | 28.90219 | 20 |
| GACAAAC | 1340 | 0.0 | 28.880348 | 33 |
| ACATCTC | 1370 | 0.0 | 27.26254 | 38 |