Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379185.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 426661 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTGTATCTCGTATGCC | 1386 | 0.3248480643883552 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATCTCG | 175 | 0.0 | 42.427242 | 39 |
| CGTATGC | 180 | 0.0 | 41.24871 | 44 |
| CTCGTAT | 185 | 0.0 | 40.13388 | 42 |
| ATCTCGT | 190 | 0.0 | 39.07773 | 40 |
| AGACCGT | 190 | 0.0 | 39.07773 | 28 |
| CGGTTCA | 200 | 0.0 | 38.248806 | 9 |
| AGCGGTT | 195 | 0.0 | 38.080196 | 7 |
| GAGCGGT | 195 | 0.0 | 38.080196 | 6 |
| GACCGTG | 195 | 0.0 | 38.075733 | 29 |
| GAGACCG | 195 | 0.0 | 38.075733 | 27 |
| CCGTGTT | 200 | 0.0 | 37.12384 | 31 |
| TCGTATG | 200 | 0.0 | 37.12384 | 43 |
| TCTCGTA | 205 | 0.0 | 36.21838 | 41 |
| ACCGCAC | 25 | 0.0021059497 | 35.998875 | 9 |
| AGAGCGG | 210 | 0.0 | 35.364326 | 5 |
| CCGAGAC | 210 | 0.0 | 35.356037 | 25 |
| CGTGTTG | 210 | 0.0 | 35.356037 | 32 |
| ACCGTGT | 210 | 0.0 | 35.356037 | 30 |
| GCGGTTC | 220 | 0.0 | 34.775715 | 8 |
| CGGAAGA | 215 | 0.0 | 34.537853 | 1 |