FastQCFastQC Report
Mon 6 Jun 2016
ERR1379203.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379203.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences351761
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTCTTATCTCGTATGCC11330.3220936942981172Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT1700.042.35120442
TCTCGTA1750.041.14116741
TCGTATG1750.041.14116743
CGTATGC1800.039.99835644
GACCGAG1800.039.99835629
TATCTCG1900.039.07734339
GAGACCG1850.038.9173227
CCGAGTC1850.038.9173231
AGACCGA1850.038.9173228
CGGAAGA1900.037.9147381
ATCTCGT1900.037.8931840
CGAGTCT1900.037.8931832
CGGTTCA1900.037.893189
GCGGTTC1950.036.9215628
CCGAGAC1950.036.92156225
AGAGCGG2000.036.008765
ACCGAGT2000.035.99852430
AATGCCG2000.035.99852421
CGAGACC2000.035.99852426
AGCGGTT2050.035.1205067