FastQCFastQC Report
Mon 6 Jun 2016
ERR1379007.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379007.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences626429
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT52890.8443095705977852Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCTGAATCTCGTATGCCGTC29450.4701251059577382Illumina Paired End PCR Primer 2 (97% over 34bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCTGAATCTCGTATGCC17460.27872272835389167Illumina Paired End PCR Primer 2 (97% over 37bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC6590.10519947192738521Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC3800.034.93743545
ATGCCGT3850.034.483744
TATGCCG4000.033.19056343
TCGGAAG6550.031.25743528
AGATCGG6850.030.21694225
GATCGGA6900.029.99797826
ATCGGAA6650.029.77242927
CCGAGAT7300.029.27884722
GAGATCG7550.027.41537324
CGAGATC7650.027.35109523
AATGCCG12750.026.9981818
TGCCGAG13000.026.6520520
ATGCCGA13150.026.1769419
GAATGCC13700.025.12604317
GCCGAGA13800.024.7809421
CGGAAGA8350.024.24986329
GGAATGC14850.023.63477116
AGGAATG15000.023.39842215
CTCGTAT5700.022.89502139
TCTCGTA5750.022.69593438