Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379372.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 844225 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCC | 1116 | 0.13219224732743048 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTAGAC | 125 | 0.0 | 39.597916 | 32 |
| TCTCGTA | 115 | 0.0 | 39.13069 | 41 |
| CCGTAGA | 130 | 0.0 | 38.074917 | 31 |
| GTAGACG | 130 | 0.0 | 36.34424 | 33 |
| CTCGTAT | 125 | 0.0 | 36.000237 | 42 |
| CGTATGC | 125 | 0.0 | 35.998104 | 44 |
| GACCGTA | 130 | 0.0 | 34.613564 | 29 |
| AGACGAT | 130 | 0.0 | 34.613564 | 35 |
| TCGTATG | 135 | 0.0 | 33.33158 | 43 |
| GACGATC | 140 | 0.0 | 32.14307 | 36 |
| TAGACGA | 155 | 0.0 | 29.03073 | 34 |
| ACCGTAG | 155 | 0.0 | 29.03073 | 30 |
| GCGGTTC | 160 | 0.0 | 28.123522 | 8 |
| GAGACCG | 160 | 0.0 | 28.123522 | 27 |
| AGACCGT | 160 | 0.0 | 28.123522 | 28 |
| GTATGCC | 170 | 0.0 | 27.792654 | 45 |
| ATCTCGT | 170 | 0.0 | 26.470762 | 40 |
| AGAGCGG | 175 | 0.0 | 25.722073 | 5 |
| GAGCGGT | 175 | 0.0 | 25.717503 | 6 |
| CGGAAGA | 190 | 0.0 | 24.875952 | 1 |