Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378891.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1640638 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACCCCATCTCGTATGCC | 14693 | 0.8955662370370552 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 7586 | 0.46238109808501326 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1780 | 0.10849437840644921 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGAACC | 1910 | 0.0 | 36.9885 | 31 |
| ATCTCGT | 1865 | 0.0 | 36.557285 | 40 |
| CGAACCC | 1940 | 0.0 | 36.532494 | 32 |
| TCTCGTA | 1885 | 0.0 | 36.169415 | 41 |
| ACCGAAC | 1955 | 0.0 | 36.137104 | 30 |
| CTCGTAT | 1890 | 0.0 | 36.073727 | 42 |
| GACCGAA | 1975 | 0.0 | 35.771156 | 29 |
| CGTATGC | 1915 | 0.0 | 35.599533 | 44 |
| AGACCGA | 1990 | 0.0 | 35.501526 | 28 |
| GAGACCG | 1995 | 0.0 | 35.41255 | 27 |
| CATCTCG | 1935 | 0.0 | 35.118515 | 39 |
| TCGTATG | 1955 | 0.0 | 34.98624 | 43 |
| GTATGCC | 1980 | 0.0 | 34.544495 | 45 |
| AGATCGG | 1265 | 0.0 | 33.082085 | 17 |
| GAACCCC | 2170 | 0.0 | 32.764065 | 33 |
| GATCGGA | 1290 | 0.0 | 32.44096 | 18 |
| ATCGGAA | 1300 | 0.0 | 32.191414 | 19 |
| CGAGACC | 2235 | 0.0 | 31.811197 | 26 |
| TCGGAAG | 1320 | 0.0 | 31.703663 | 20 |
| CGAGATC | 1455 | 0.0 | 28.916723 | 15 |