FastQCFastQC Report
Mon 6 Jun 2016
ERR1378635.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378635.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537951
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA40280.7487670810166726No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA29610.5504218785725837No Hit
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA5640.10484226258525405No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCATA4650.044.99804324
TAAGCCG4750.044.0507213
CCGATGA4850.043.14245617
ACGTCAT4850.043.14245623
CGATGAC4850.043.14245618
GATGACG5000.042.29816419
AGCCGAT5000.041.84818315
TGACGTC5000.041.84818321
ATGACGT5000.041.84818320
GACGTCA5050.041.4338522
GCCGATG5050.041.4338516
CGGGGAA4400.040.9073215
TTCGGTA4450.039.9420922
CGGTATT4450.039.9420924
AAGCCGA5250.039.85541514
AGGCGGT4550.039.55872734
GGCGGTC4500.039.49828735
GTCATAA5400.039.1649725
TTCCTCG3800.039.07725510
GCGGTCT4600.038.6396336