FastQCFastQC Report
Mon 6 Jun 2016
ERR1379049.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379049.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences827770
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGT507.15628E-526.99985528
CCCGCCA952.104207E-823.6941033
CGCCCGC500.002259384122.5080381
GACCGTG500.002264148822.4998829
CGGTTCA500.002264943722.4985229
TCTCGTA500.002264943722.49852241
CTCGTAT550.003937121520.453242
CCGCCAC1305.75983E-717.312834
GCCCGCC952.809197E-416.5858732
AGAAACG1056.037343E-414.99901339
TCGTATA1056.037343E-414.9990139
CGGGATT1251.3804852E-414.39905314
GAAACGG1951.8281935E-713.84524310
ATCTTCG1150.001198592513.6997165
AGAGCGG1000.00753386813.5040065
CCACCGC1000.007548937613.49992757
GTTAGCC1504.2703206E-513.49911113
ACGGGAT1200.001656546413.12413713
GAGCCGA1200.001656546413.12413740
CTTCGTA1555.80626E-513.06444557