Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379192.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 476096 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGATTATCTCGTATGCC | 1169 | 0.2455387148810324 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGTCGA | 165 | 0.0 | 39.54499 | 31 |
| TATCTCG | 165 | 0.0 | 39.54499 | 39 |
| AGACCGT | 165 | 0.0 | 39.54499 | 28 |
| CGTCGAT | 165 | 0.0 | 39.54499 | 32 |
| CGTATGC | 170 | 0.0 | 38.381905 | 44 |
| CTCGTAT | 170 | 0.0 | 38.381905 | 42 |
| TCGTATG | 170 | 0.0 | 38.381905 | 43 |
| ACCGTCG | 170 | 0.0 | 38.381905 | 30 |
| TCTCGTA | 175 | 0.0 | 37.28528 | 41 |
| GCGGTTC | 170 | 0.0 | 37.05839 | 8 |
| GTCGATT | 185 | 0.0 | 36.48606 | 33 |
| CGATTAT | 185 | 0.0 | 36.48606 | 35 |
| ATCTCGT | 180 | 0.0 | 36.249577 | 40 |
| GACCGTC | 185 | 0.0 | 35.26986 | 29 |
| CGGTTCA | 185 | 0.0 | 35.26986 | 9 |
| GAGACCG | 185 | 0.0 | 35.26986 | 27 |
| TCGATTA | 195 | 0.0 | 34.614983 | 34 |
| CGGAAGA | 185 | 0.0 | 34.06081 | 1 |
| AAGAGCG | 190 | 0.0 | 33.16099 | 4 |
| GAGCGGT | 190 | 0.0 | 33.15751 | 6 |