FastQCFastQC Report
Mon 6 Jun 2016
ERR1379028.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379028.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences983967
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC504.879803E-835.9982928
TCTCGTA651.4037141E-831.15236741
ATGCCGA602.4193832E-729.99857722
CAACGAT406.167218E-428.12366736
CTCGTAT755.6399585E-826.9987242
GACCGCA755.6399585E-826.9987229
CGTATGC709.309115E-725.71306644
CGGTTCA801.05395884E-725.31139
GCGGCGC450.001226768124.99881634
ACCGCAA751.6979338E-623.99886130
AATGCCG751.6979338E-623.99886121
TCGTATG851.8939318E-723.822443
CCGAGAC952.1156666E-823.68308625
GCGGTTC802.9726325E-622.5012198
GAGACCG802.9752573E-622.49893427
AATCTCG602.4679507E-422.49893218
TGCCGAG855.03306E-621.17546723
GGCGCAA550.003937222520.45357513
CGGAAGA1009.0254434E-720.2562451
AGAGCGG908.234541E-620.0041355