FastQCFastQC Report
Mon 6 Jun 2016
ERR1378644.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378644.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences929022
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA32770.35273653368811503No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA27920.3005310961419643No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG3550.041.82733513
CGGTATT3500.040.49864224
CGTCATA3800.039.66972424
TTCGGTA3600.039.37156322
TCGGTAT3600.039.37156323
GCGGTCT3500.039.2129736
AGCCGAT3850.038.5680615
GACGTCA4000.038.24666222
CGGGGAA3750.037.796715
ACGTCAT4000.037.68420823
ATGACGT3950.037.59165620
CGATGAC3950.037.59165618
AAGCCGA4050.036.66346414
GATGACG4050.036.66346419
GGCGGTC3750.036.59877435
CCGATGA4100.036.2163517
TGACGTC4100.036.2163521
AATTCGG3950.035.88294220
AGGCGGT3900.035.76803234
GAATTCG4050.034.99694419