FastQCFastQC Report
Mon 6 Jun 2016
ERR1379178.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379178.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences338348
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATATCCATCTCGTATGCC10610.31358246539066287Illumina Paired End PCR Primer 2 (97% over 38bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC1250.043.244
ACCGATA1200.043.12500430
GACCGAT1150.043.0434829
CTCGTAT1300.041.5384642
AGCGGTT1300.041.538467
TCTCGTA1300.041.5384641
TCGTATG1300.041.5384643
CCGATAT1250.041.431
AGACCGA1200.041.25000428
CCGAGAC1200.041.25000425
GCGGTTC1350.040.08
AGAGCGG1350.040.05
CGGTTCA1400.038.5714269
GAGCGGT1400.038.5714266
CGATATC1400.038.57142632
AAGAGCG1450.037.241384
ATGCCGA1450.037.2413822
TGCCGAG1400.036.96428323
CGGAAGA1500.036.01
ATCTCGT1500.036.040