FastQCFastQC Report
Mon 6 Jun 2016
ERR1379081.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379081.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences699605
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACACCG250.002106742735.9993179
ATCTCGT855.456968E-1231.76410140
CGTATGC855.456968E-1231.76410144
TCTCGTA855.456968E-1231.76410141
CTCGTAT901.2732926E-1129.9994342
GAGCGGT1001.8189894E-1229.2515356
CGGGCCT852.0372681E-1029.11709232
ACCGGGC903.947207E-1027.49947730
AGCGGTT1105.456968E-1226.5904037
GACCGGG957.403287E-1026.05213529
CGGTTCA1058.367351E-1125.7137979
TCGTATG1058.367351E-1125.71379743
AGACCGG1001.3424142E-924.7495328
AAGAGCG1101.5097612E-1024.5467414
AGAGCGG1101.5097612E-1024.5467415
GCGGTTC1101.5097612E-1024.5449898
ATGCCGA1152.6557245E-1023.47781422
TGCCGAG1305.0931703E-1122.49957323
AATGCCG1257.512426E-1021.59958821
GAGACCG1257.512426E-1021.59958827