Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379023.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1617836 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4593 | 0.2838977498337285 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAAGAATCTCGTATGCCGTC | 2670 | 0.1650352693350871 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CTAATCG | 25 | 0.0021076172 | 35.99911 | 38 |
| TATGCCG | 430 | 0.0 | 30.3509 | 43 |
| ATCGGAA | 690 | 0.0 | 29.672262 | 27 |
| GATCGGA | 700 | 0.0 | 29.569782 | 26 |
| AGATCGG | 710 | 0.0 | 29.470192 | 25 |
| TCGGAAG | 710 | 0.0 | 29.470192 | 28 |
| ATGCCGT | 460 | 0.0 | 28.371496 | 44 |
| TGCCGTC | 470 | 0.0 | 27.767847 | 45 |
| AATGCCG | 1290 | 0.0 | 26.684563 | 18 |
| ATGCCGA | 1365 | 0.0 | 25.383204 | 19 |
| TGCCGAG | 1360 | 0.0 | 25.311092 | 20 |
| GACCGTT | 525 | 0.0 | 24.855759 | 26 |
| ACCGTTA | 530 | 0.0 | 24.196766 | 27 |
| CGGAAGA | 910 | 0.0 | 22.993229 | 29 |
| CTCGTAT | 585 | 0.0 | 22.691746 | 39 |
| GAATGCC | 1560 | 0.0 | 22.498749 | 17 |
| CGTTAAG | 570 | 0.0 | 22.498749 | 29 |
| AGACCGT | 580 | 0.0 | 22.498747 | 25 |
| CCGTTAA | 580 | 0.0 | 22.498747 | 28 |
| TCTCGTA | 595 | 0.0 | 22.310373 | 38 |