FastQCFastQC Report
Mon 6 Jun 2016
ERR1379121.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379121.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences914199
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACGAGTATCTCGTATGCC38190.4177427452884985Illumina Paired End PCR Primer 2 (97% over 34bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGACGAGTATCTCGTATGCCGTC29830.3262965721905187Illumina Paired End PCR Primer 2 (96% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3400.039.04079443
ATGCCGT3950.033.60473344
TGCCGTC4750.028.41863445
CGGAAGA7550.027.1555211
CGTATGC7950.025.46953244
CTCGTAT8000.025.31034742
ACGAGTA8200.025.24175534
CGAGTAT8250.025.08877635
TCTCGTA8200.024.6930241
TCGTATG8200.024.6930243
GACGAGT8400.024.64075933
GACCGAC8650.024.18869229
AGACCGA8700.024.04836328
TATCTCG8450.023.96245839
ACCGACG8650.023.928630
ATCTCGT8800.023.77638640
GTATGCC8600.023.54450645
GAGTATC9100.022.74407436
GAGACCG9450.022.37659827
CCGACGA9400.022.01940231