FastQCFastQC Report
Mon 6 Jun 2016
ERR1390721.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390721.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences672821
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG802.9782823E-622.49427817
GTGTGCG550.00394236620.44782331
GATCGGA908.261042E-619.99491318
ATCGGAA908.261042E-619.99491319
CCTTCGT951.2939365E-518.982051
CTTCGTT851.18673895E-418.563332
CCGAGAC1002.0503749E-517.99408545
TCGGAAG1053.1181065E-517.13722220
GAGCCGA1205.1828683E-616.86945540
GCCACCG1156.662256E-515.6831616
GAACCCG1451.8108021E-615.51329315
AACCCGG1502.5764566E-614.99618516
ACCCGGG1502.5764566E-614.99618517
CGGGATT900.00375812114.99618414
AGCCGAG1502.5784484E-614.99507141
CGGAAGA1209.769923E-514.9950721
AGCGGTT1209.769923E-514.9950727
TGAGCCG1453.1102067E-513.96092839
GCGGTTC1301.929632E-413.84160428
GACCCAC1000.007563164513.495563523