Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378857.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1072022 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4327 | 0.40362977625459184 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGTGTATCTCGTATGCCGTC | 3125 | 0.2915052116467759 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGTGTATCTCGTATGCC | 2904 | 0.2708899630791159 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 355 | 0.0 | 38.022453 | 43 |
| ATGCCGT | 365 | 0.0 | 37.597088 | 44 |
| TGCCGTC | 400 | 0.0 | 33.744926 | 45 |
| ATCGGAA | 625 | 0.0 | 32.393616 | 27 |
| TCGGAAG | 660 | 0.0 | 31.35746 | 28 |
| GATCGGA | 670 | 0.0 | 30.553682 | 26 |
| AGATCGG | 675 | 0.0 | 30.32736 | 25 |
| GAGATCG | 770 | 0.0 | 26.585674 | 24 |
| CCGAGAT | 810 | 0.0 | 26.383692 | 22 |
| AATGCCG | 1385 | 0.0 | 25.662813 | 18 |
| ATGCCGA | 1390 | 0.0 | 25.408665 | 19 |
| CGAGATC | 835 | 0.0 | 25.054945 | 23 |
| TGCCGAG | 1405 | 0.0 | 24.977287 | 20 |
| GCCGAGA | 1530 | 0.0 | 22.642597 | 21 |
| GAATGCC | 1575 | 0.0 | 22.424154 | 17 |
| AACACGG | 95 | 5.5414966E-7 | 21.311592 | 21 |
| TAACACG | 85 | 5.0402778E-6 | 21.1723 | 20 |
| CGGAAGA | 995 | 0.0 | 21.02699 | 29 |
| GGAATGC | 1670 | 0.0 | 21.013824 | 16 |
| CCGTTGT | 665 | 0.0 | 20.97429 | 31 |