FastQCFastQC Report
Mon 6 Jun 2016
ERR1390622.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390622.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences255195
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACGCAC250.002099099636.0172541
CCCCGTC300.00513765230.00261319
ATCGGAA300.00513765230.00261319
GCGGTTC300.005142579329.99673328
TCGGAAG300.005142579329.99673320
CCGAGAC300.005142579329.99673345
ACTAGAC900.003745983414.99836620
TATCTTC1454.814153E-412.4173085
GCACTCC1650.00142503210.91004116
CAGCTAC1450.006785707510.8651453
AGCTACT1450.006785707510.8651454
ATTCTCA2402.7540904E-510.31137733
TGCACTC1750.002325920610.28661115
CTAGACA1850.0036922649.72867120
CAGAAAC2403.120731E-49.37581638
GAAATAT2250.00180471779.0043131
GGCAGGA2000.00701799348.9990222
GACAGAA2350.00269286968.61608323
CCTCAGC2350.00269286968.61608332
TTCTCAG2600.0066967747.787613434