Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378839.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 951944 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2614 | 0.2745959846377518 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGCATATCTCGTATGCC | 2350 | 0.24686326086408444 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGCATATCTCGTATGCCGTC | 2196 | 0.23068583866277848 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 315 | 0.0 | 37.854446 | 43 |
| ATGCCGT | 320 | 0.0 | 36.5599 | 44 |
| TGCCGTC | 345 | 0.0 | 33.91063 | 45 |
| GATCGGA | 440 | 0.0 | 31.697292 | 26 |
| TCGGAAG | 455 | 0.0 | 30.657156 | 28 |
| ATCGGAA | 455 | 0.0 | 30.652325 | 27 |
| AGATCGG | 460 | 0.0 | 30.320742 | 25 |
| CCGAGAT | 565 | 0.0 | 25.482233 | 22 |
| GAGATCG | 575 | 0.0 | 24.64783 | 24 |
| CGAGATC | 600 | 0.0 | 23.995771 | 23 |
| ATGCCGA | 1100 | 0.0 | 23.518583 | 19 |
| TGCCGAG | 1110 | 0.0 | 23.306702 | 20 |
| AATGCCG | 1110 | 0.0 | 23.102821 | 18 |
| AGACCGT | 665 | 0.0 | 22.329237 | 28 |
| CGTATGC | 645 | 0.0 | 22.323992 | 44 |
| GACCGTT | 645 | 0.0 | 22.323992 | 29 |
| TCGTATG | 655 | 0.0 | 21.983166 | 43 |
| CTCGTAT | 645 | 0.0 | 21.97518 | 42 |
| CCGTTGC | 665 | 0.0 | 21.65373 | 31 |
| ACCGTTG | 665 | 0.0 | 21.652594 | 30 |