Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378860.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 722709 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2269 | 0.3139576233311056 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCAATTATCTCGTATGCC | 1677 | 0.2320436026118396 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGCCAATTATCTCGTATGCCGTC | 1616 | 0.22360313763907744 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 240 | 0.0 | 38.435074 | 43 |
| ATGCCGT | 250 | 0.0 | 35.99773 | 44 |
| TGCCGTC | 250 | 0.0 | 35.99773 | 45 |
| AGATCGG | 400 | 0.0 | 34.305588 | 25 |
| GATCGGA | 400 | 0.0 | 34.305588 | 26 |
| ATCGGAA | 400 | 0.0 | 34.305588 | 27 |
| TCGGAAG | 405 | 0.0 | 33.88206 | 28 |
| CCGAGAT | 460 | 0.0 | 29.830946 | 22 |
| AATGCCG | 770 | 0.0 | 29.799192 | 18 |
| TGCCGAG | 810 | 0.0 | 28.605347 | 20 |
| ATGCCGA | 820 | 0.0 | 28.256504 | 19 |
| GGAATGC | 840 | 0.0 | 27.048122 | 16 |
| GAATGCC | 870 | 0.0 | 25.85686 | 17 |
| GCCGAGA | 900 | 0.0 | 25.744814 | 21 |
| CGAGATC | 560 | 0.0 | 24.503994 | 23 |
| GAGATCG | 575 | 0.0 | 23.864758 | 24 |
| TCTCGTA | 400 | 0.0 | 23.057856 | 38 |
| CGGAAGA | 590 | 0.0 | 22.876747 | 29 |
| CTCGTAT | 395 | 0.0 | 22.783373 | 39 |
| TATCTCG | 395 | 0.0 | 22.781797 | 36 |