FastQCFastQC Report
Mon 6 Jun 2016
ERR1390597.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390597.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437394
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCTAT300.00514841729.9945131
TCGGAAG450.001226647324.99542620
ACCCCGT754.6007448E-520.99615932
CGTGAGC851.18197306E-418.5706081
AACCCCG851.2039642E-418.52602231
ATCTTCG952.7913498E-416.5967865
CCCCGTC850.002564887515.87944833
CCACGCC850.002564887515.87944810
ACTTGCC900.003753536414.9972558
ACTAGAC2304.2200554E-1014.67290619
GCCCGGC1301.9229548E-413.84520314
TGAGCCG1150.001201352213.69314845
TCTTCGT1000.007550323413.4975316
TTCGTAT1000.007550323413.4975318
ACCACGC1000.007550323413.4975319
GAGCCAC2851.0180884E-811.8548484
CTGACCA1350.00400577511.66453238
GTTGGCC1802.3392867E-411.24922813
AACTAGA3052.820525E-811.06481418
ATTCTCA5350.010.93257932