Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379198.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 515894 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTATCATCTCGTATGCC | 1228 | 0.23803339445700086 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GACCGGT | 180 | 0.0 | 43.748867 | 29 |
| CCGGTTA | 185 | 0.0 | 42.566467 | 31 |
| CGTATGC | 190 | 0.0 | 41.446297 | 44 |
| GCGGTTC | 190 | 0.0 | 41.446297 | 8 |
| CGGTTAT | 190 | 0.0 | 41.446297 | 32 |
| CTCGTAT | 195 | 0.0 | 40.38357 | 42 |
| CATCTCG | 195 | 0.0 | 40.38357 | 39 |
| AATGCCG | 195 | 0.0 | 40.38357 | 21 |
| GAGACCG | 195 | 0.0 | 40.38357 | 27 |
| AGACCGG | 195 | 0.0 | 40.38357 | 28 |
| ATGCCGA | 195 | 0.0 | 40.38357 | 22 |
| ACCGGTT | 200 | 0.0 | 39.37398 | 30 |
| TCTCGTA | 200 | 0.0 | 39.37398 | 41 |
| TCGTATG | 200 | 0.0 | 39.37398 | 43 |
| ATCTCGT | 205 | 0.0 | 38.413643 | 40 |
| CGGTTCA | 205 | 0.0 | 38.413643 | 9 |
| CGGAAGA | 210 | 0.0 | 37.509937 | 1 |
| AAGAGCG | 210 | 0.0 | 37.5063 | 4 |
| GTATGCC | 210 | 0.0 | 37.49903 | 45 |
| AGAGCGG | 215 | 0.0 | 36.63406 | 5 |