FastQCFastQC Report
Mon 6 Jun 2016
ERR1379215.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379215.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences284940
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTCAAGATCTCGTATGCC7640.26812662314873303Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGTCA700.041.78555331
CGGTCAA700.041.78555332
GACCGGT650.041.538329
CTCGTAT750.038.99984742
CGGTTCA750.038.9998479
TCTCGTA750.038.99984741
ATCTCGT800.036.56235540
ACCGGTC800.036.56235530
CGTATGC800.036.56235544
GCGGTTC800.036.5623558
AGACCGG751.8189894E-1235.9998628
AAGAGCG850.034.4116334
GAGCGGT850.034.4116336
TCGTATG850.034.41163343
AGAGCGG850.034.4116335
GAGACCG801.8189894E-1233.74986627
AGCGGTT900.032.4998747
AATGCCG900.032.49987421
GTATGCC900.032.49987445
CCGAGAC855.456968E-1231.76458225