FastQCFastQC Report
Mon 6 Jun 2016
ERR1379156.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379156.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences345238
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTAACATCTCGTATGCC13560.39277252214414404Illumina Paired End PCR Primer 2 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG950.044.9988443
ACCGCTT1050.042.8560430
CGTATGC1000.042.748944
CTCGTAT1000.042.748942
CCGCTTA1000.042.748931
TCTCGTA1000.042.748941
GACCGCT1050.040.71323829
CGCTTAA1050.040.71323832
GTATGCC1100.038.86263745
AGACCGC1100.038.86263728
ATCTCGT1150.037.1729640
GAGACCG1150.037.1729627
AGCGGTT1300.034.6144947
GCGGTTC1350.033.3324748
GAGCGGT1350.033.3324746
CCGAGAC1300.032.8837725
CGGTTCA1400.032.1420339
CATCTCG1400.030.5349339
AATGCCG1500.029.99922821
AGAGCGG1500.029.9992285