FastQCFastQC Report
Mon 6 Jun 2016
ERR1378973.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378973.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences951013
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT59960.6304855979886711Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATGTATCTCGTATGCCGTC31700.3333287767885402Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCATGTATCTCGTATGCC15140.15919866500247631Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4650.036.77230543
CTACCCG250.002106913836.00004213
ATGCCGT5000.034.19824244
TCGGAAG8250.033.8164428
GATCGGA8250.033.27101526
ATCGGAA8350.032.87256227
TGCCGTC5300.032.26249345
AGATCGG8750.031.88407525
CCGAGAT9250.029.6741522
AATGCCG15550.029.08210818
GAGATCG9500.028.65642224
ATGCCGA15800.028.47954819
TGCCGAG15950.028.07065820
CGAGATC9900.027.49858723
GAATGCC16450.027.49243217
GGAATGC17300.026.53182216
GCCGAGA16750.026.46132521
CGGAAGA10550.026.4441429
CGTATGC6500.026.30634141
TATCTCG6500.026.30634136