Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378819.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 948371 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTGTTATCTCGTATGCCGTC | 1771 | 0.18674126475820116 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTTGTTATCTCGTATGCC | 1241 | 0.13085596248725448 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 245 | 0.0 | 38.569168 | 43 |
| TGCCGTC | 255 | 0.0 | 37.056652 | 45 |
| ATGCCGT | 270 | 0.0 | 34.99795 | 44 |
| CGAGTAT | 30 | 0.0051482846 | 29.998241 | 19 |
| ACCGGTT | 360 | 0.0 | 26.248463 | 27 |
| TCGGAAG | 190 | 0.0 | 26.051107 | 28 |
| CTCGTAT | 365 | 0.0 | 25.888895 | 39 |
| TCTCGTA | 365 | 0.0 | 25.888895 | 38 |
| GATCGGA | 175 | 0.0 | 25.71278 | 26 |
| CGGTTGT | 385 | 0.0 | 25.71278 | 29 |
| CGTATGC | 370 | 0.0 | 25.539042 | 41 |
| GACCGGT | 370 | 0.0 | 25.539042 | 26 |
| ATCTCGT | 380 | 0.0 | 24.868277 | 37 |
| TATCTCG | 380 | 0.0 | 24.868277 | 36 |
| AGACCGG | 385 | 0.0 | 24.544018 | 25 |
| CCGGTTG | 385 | 0.0 | 24.544018 | 28 |
| AGATCGG | 185 | 0.0 | 24.322897 | 25 |
| TCGTATG | 390 | 0.0 | 24.229351 | 40 |
| ATGCCGA | 595 | 0.0 | 23.822136 | 19 |
| ATCGGAA | 190 | 0.0 | 23.682825 | 27 |