Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378617.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 704060 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3946 | 0.5604635968525409 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2825 | 0.40124421214101075 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATCGTC | 20 | 7.024207E-4 | 45.009377 | 5 |
| GACGTCA | 455 | 0.0 | 42.524254 | 22 |
| GATGACG | 455 | 0.0 | 42.524254 | 19 |
| TAAGCCG | 460 | 0.0 | 42.06203 | 13 |
| GCCGATG | 465 | 0.0 | 41.60975 | 16 |
| CGTCATA | 475 | 0.0 | 41.21033 | 24 |
| CCGATGA | 475 | 0.0 | 41.2074 | 17 |
| ATGACGT | 470 | 0.0 | 41.16709 | 20 |
| ACGTCAT | 480 | 0.0 | 40.778164 | 23 |
| AGCCGAT | 475 | 0.0 | 40.733753 | 15 |
| CGATGAC | 475 | 0.0 | 40.733753 | 18 |
| TGACGTC | 480 | 0.0 | 40.30945 | 21 |
| GCGGTCT | 440 | 0.0 | 39.886173 | 36 |
| CGGTATT | 440 | 0.0 | 39.886173 | 24 |
| ATTCGGT | 440 | 0.0 | 39.883343 | 21 |
| TTCGGTA | 440 | 0.0 | 39.883343 | 22 |
| TCGGTAT | 440 | 0.0 | 39.883343 | 23 |
| CGGGGAA | 445 | 0.0 | 39.435215 | 15 |
| TCCTCGG | 380 | 0.0 | 39.07599 | 11 |
| TTCCTCG | 380 | 0.0 | 39.07599 | 10 |