Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379088.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 893768 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACTACATCTCGTATGCC | 4083 | 0.4568299603476518 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACTACATCTCGTATGCCGTC | 3346 | 0.37437008261651794 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| ATGCCGT | 450 | 0.0 | 38.995003 | 44 |
| TATGCCG | 460 | 0.0 | 38.636356 | 43 |
| TGCCGTC | 510 | 0.0 | 35.289597 | 45 |
| CGGAAGA | 880 | 0.0 | 27.904781 | 1 |
| GACCGTA | 985 | 0.0 | 24.439863 | 29 |
| CCGTACT | 980 | 0.0 | 24.33634 | 31 |
| CGTACTA | 980 | 0.0 | 24.33634 | 32 |
| ACCGTAC | 980 | 0.0 | 24.33498 | 30 |
| TTCCGAT | 65 | 1.5254309E-5 | 24.226309 | 20 |
| GAAGAGC | 1050 | 0.0 | 23.80931 | 3 |
| CTCGTAT | 980 | 0.0 | 23.64493 | 42 |
| TCTCGTA | 985 | 0.0 | 23.524906 | 41 |
| CGTATGC | 1005 | 0.0 | 23.504452 | 44 |
| TCGTATG | 1000 | 0.0 | 23.397005 | 43 |
| GTACTAC | 1020 | 0.0 | 23.381975 | 33 |
| GTATGCC | 1030 | 0.0 | 22.715538 | 45 |
| AGACCGT | 1065 | 0.0 | 22.604004 | 28 |
| ATCTCGT | 1050 | 0.0 | 22.068604 | 40 |
| CATCTCG | 1050 | 0.0 | 22.068604 | 39 |
| GAGACCG | 1110 | 0.0 | 21.886639 | 27 |