Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378956.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 707597 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 6450 | 0.9115358035718071 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTATAATCTCGTATGCCGTC | 3321 | 0.4693349463041816 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTATAATCTCGTATGCC | 1976 | 0.27925499966789 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 857 | 0.12111413700171142 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 535 | 0.0 | 37.851 | 43 |
| ATGCCGT | 555 | 0.0 | 36.487003 | 44 |
| TACCGCT | 25 | 0.0021078777 | 35.995422 | 21 |
| TGCCGTC | 570 | 0.0 | 35.526817 | 45 |
| ATCGGAA | 910 | 0.0 | 35.107903 | 27 |
| TCGGAAG | 945 | 0.0 | 34.045692 | 28 |
| GATCGGA | 950 | 0.0 | 33.86651 | 26 |
| AGATCGG | 960 | 0.0 | 33.513733 | 25 |
| CGAGATC | 990 | 0.0 | 32.725426 | 23 |
| GAGATCG | 1020 | 0.0 | 31.542336 | 24 |
| CCGAGAT | 1065 | 0.0 | 31.05458 | 22 |
| TCCGAAT | 30 | 0.0051473584 | 29.998306 | 9 |
| TGCTCCG | 30 | 0.0051473584 | 29.998306 | 28 |
| AATGCCG | 1790 | 0.0 | 29.663128 | 18 |
| TGCCGAG | 1805 | 0.0 | 29.289902 | 20 |
| ATGCCGA | 1815 | 0.0 | 29.254541 | 19 |
| CGTATGC | 720 | 0.0 | 28.125399 | 41 |
| GAATGCC | 1890 | 0.0 | 28.095634 | 17 |
| CGGAAGA | 1155 | 0.0 | 27.855568 | 29 |
| CGAGTAT | 730 | 0.0 | 27.738157 | 29 |