Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379096.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1321656 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTATGATCTCGTATGCCGTC | 2557 | 0.19346940504942284 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTATGATCTCGTATGCC | 2386 | 0.18053109129758424 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 330 | 0.0 | 32.72653 | 43 |
| ATGCCGT | 375 | 0.0 | 29.399332 | 44 |
| CTCGTAT | 535 | 0.0 | 21.448109 | 42 |
| TGCCGTC | 520 | 0.0 | 21.201443 | 45 |
| TCGTATG | 560 | 0.0 | 20.892384 | 43 |
| TCGGAAG | 310 | 0.0 | 20.32135 | 28 |
| TCTCGTA | 565 | 0.0 | 20.309275 | 41 |
| CGTCTAT | 580 | 0.0 | 20.173483 | 32 |
| CCGTCTA | 595 | 0.0 | 20.04308 | 31 |
| CGTATGC | 575 | 0.0 | 19.564774 | 44 |
| CGGAAGA | 670 | 0.0 | 19.499306 | 1 |
| ACCGTCT | 610 | 0.0 | 19.179893 | 30 |
| AGACCGT | 605 | 0.0 | 18.965792 | 28 |
| GACCGTC | 620 | 0.0 | 18.870539 | 29 |
| ATCGGAA | 345 | 0.0 | 18.25631 | 27 |
| GTATGCC | 655 | 0.0 | 18.205694 | 45 |
| GAGCGGT | 990 | 0.0 | 18.197243 | 3 |
| AGCGGTT | 980 | 0.0 | 18.153141 | 4 |
| TGCCGAG | 975 | 0.0 | 17.764793 | 20 |
| CGGTTCA | 1005 | 0.0 | 17.698221 | 6 |