Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378954.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 935642 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4533 | 0.48448017510971075 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATAGAATCTCGTATGCCGTC | 2345 | 0.2506300486724623 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGGAAG | 680 | 0.0 | 34.74067 | 28 |
| TATGCCG | 270 | 0.0 | 34.1702 | 43 |
| ATCGGAA | 670 | 0.0 | 33.244373 | 27 |
| GATCGGA | 665 | 0.0 | 33.156006 | 26 |
| AGATCGG | 675 | 0.0 | 32.99812 | 25 |
| CCGTATA | 295 | 0.0 | 31.269403 | 28 |
| CGTATAG | 300 | 0.0 | 30.748245 | 29 |
| GACCGTA | 300 | 0.0 | 30.748245 | 26 |
| GCGACTA | 30 | 0.005148209 | 29.998293 | 23 |
| TGCCGAG | 1125 | 0.0 | 29.99829 | 20 |
| CGGAAGA | 790 | 0.0 | 29.903358 | 29 |
| ATGCCGA | 1155 | 0.0 | 29.413908 | 19 |
| ATGCCGT | 315 | 0.0 | 29.28874 | 44 |
| ACCGTAT | 315 | 0.0 | 29.284044 | 27 |
| AATGCCG | 1175 | 0.0 | 28.913246 | 18 |
| TGCCGTC | 330 | 0.0 | 27.957434 | 45 |
| CCGAGAT | 850 | 0.0 | 27.792532 | 22 |
| CTCGTAT | 335 | 0.0 | 27.535742 | 39 |
| GAATGCC | 1255 | 0.0 | 27.070171 | 17 |
| TCGTATG | 345 | 0.0 | 26.737608 | 40 |