Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378789.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 886543 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAACTCTATCTCGTATGCCGTC | 1631 | 0.18397302781703764 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACTCTATCTCGTATGCC | 1348 | 0.15205128234050688 | Illumina Paired End PCR Primer 2 (97% over 38bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 215 | 0.0 | 42.90477 | 43 |
| ATGCCGT | 240 | 0.0 | 38.435528 | 44 |
| TGCCGTC | 240 | 0.0 | 38.435528 | 45 |
| CGTAATA | 35 | 2.820711E-4 | 32.141205 | 17 |
| ACCGAAC | 405 | 0.0 | 22.776608 | 27 |
| CTCGTAT | 410 | 0.0 | 22.498842 | 39 |
| TATCTCG | 410 | 0.0 | 22.498842 | 36 |
| CGTATGC | 415 | 0.0 | 22.227774 | 41 |
| GAGACCG | 415 | 0.0 | 22.227774 | 24 |
| TCGTATG | 415 | 0.0 | 22.227774 | 40 |
| GACCGAA | 420 | 0.0 | 21.963156 | 26 |
| AGACCGA | 420 | 0.0 | 21.963156 | 25 |
| CGGAAGA | 370 | 0.0 | 21.901884 | 1 |
| TCTCGTA | 430 | 0.0 | 21.452385 | 38 |
| ATCTCGT | 435 | 0.0 | 21.205807 | 37 |
| CCGAACT | 435 | 0.0 | 21.205807 | 28 |
| AATTCCG | 55 | 0.0039370107 | 20.453495 | 20 |
| GTATGCC | 455 | 0.0 | 20.273685 | 42 |
| ATGCCGA | 600 | 0.0 | 19.873978 | 19 |
| AATGCCG | 615 | 0.0 | 19.389246 | 18 |