Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378643.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1164142 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3483 | 0.29919030496279664 | No Hit |
| TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2586 | 0.222137849162731 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTCATA | 400 | 0.0 | 42.182865 | 24 |
| TAAGCCG | 390 | 0.0 | 42.110764 | 13 |
| AGCCGAT | 415 | 0.0 | 41.200294 | 15 |
| GACGTCA | 420 | 0.0 | 40.709812 | 22 |
| TGACGTC | 415 | 0.0 | 40.658188 | 21 |
| CGATGAC | 425 | 0.0 | 39.701523 | 18 |
| TTCGGTA | 265 | 0.0 | 39.052315 | 22 |
| TCGGTAT | 265 | 0.0 | 39.052315 | 23 |
| CCGATGA | 435 | 0.0 | 38.78885 | 17 |
| ACGTCAT | 445 | 0.0 | 38.42275 | 23 |
| GCCGATG | 455 | 0.0 | 37.08384 | 16 |
| AAGCCGA | 450 | 0.0 | 36.995937 | 14 |
| CGGTATT | 280 | 0.0 | 36.96023 | 24 |
| GAATTCG | 280 | 0.0 | 36.96023 | 19 |
| AATTCGG | 285 | 0.0 | 36.311802 | 20 |
| ATGACGT | 465 | 0.0 | 36.28634 | 20 |
| GATGACG | 470 | 0.0 | 35.900314 | 19 |
| ATTCGGT | 305 | 0.0 | 33.9307 | 21 |
| GGCGGTC | 315 | 0.0 | 32.853535 | 35 |
| GCGGTCT | 310 | 0.0 | 32.657707 | 36 |