Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378947.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1168300 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGGCACAATCTCGTATGCC | 10152 | 0.8689548917230163 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 5354 | 0.45827270392878544 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1216 | 0.10408285543096808 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCTCGTA | 1430 | 0.0 | 35.560486 | 41 |
| CTCGTAT | 1435 | 0.0 | 35.436584 | 42 |
| TCGTATG | 1470 | 0.0 | 35.050556 | 43 |
| ACCGGGC | 1500 | 0.0 | 34.799534 | 30 |
| CGTATGC | 1485 | 0.0 | 34.544994 | 44 |
| ATCTCGT | 1470 | 0.0 | 34.439793 | 40 |
| AATCTCG | 1485 | 0.0 | 34.243435 | 39 |
| GACCGGG | 1525 | 0.0 | 34.229053 | 29 |
| AGACCGG | 1535 | 0.0 | 34.00606 | 28 |
| GAGACCG | 1550 | 0.0 | 33.67697 | 27 |
| CGGGCAC | 1550 | 0.0 | 33.67697 | 32 |
| GTATGCC | 1525 | 0.0 | 33.638897 | 45 |
| CCGGGCA | 1620 | 0.0 | 32.36068 | 31 |
| AGATCGG | 745 | 0.0 | 31.10697 | 17 |
| CGAGACC | 1720 | 0.0 | 31.002493 | 26 |
| GATCGGA | 760 | 0.0 | 30.493013 | 18 |
| GCACAAT | 1715 | 0.0 | 30.43691 | 35 |
| TCGGAAG | 780 | 0.0 | 29.9996 | 20 |
| ATCGGAA | 790 | 0.0 | 29.33505 | 19 |
| CACAATC | 1765 | 0.0 | 29.193497 | 36 |