Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379195.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 478399 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCCTATAATCTCGTATGCC | 1350 | 0.2821912253161064 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TCGTATG | 135 | 0.0 | 41.66599 | 43 |
| CGTATGC | 140 | 0.0 | 40.177917 | 44 |
| CCGCCTA | 140 | 0.0 | 40.177917 | 31 |
| AAGAGCG | 150 | 0.0 | 39.003445 | 4 |
| GAGCGGT | 150 | 0.0 | 39.003445 | 6 |
| CGGTTCA | 145 | 0.0 | 38.792473 | 9 |
| GACCGCC | 145 | 0.0 | 38.792473 | 29 |
| GAGACCG | 145 | 0.0 | 38.792473 | 27 |
| AGACCGC | 145 | 0.0 | 38.792473 | 28 |
| GCGGTTC | 155 | 0.0 | 37.745266 | 8 |
| CTCGTAT | 150 | 0.0 | 37.499393 | 42 |
| CGCCTAT | 150 | 0.0 | 37.499393 | 32 |
| TCTCGTA | 150 | 0.0 | 37.499393 | 41 |
| ATCTCGT | 155 | 0.0 | 36.28973 | 40 |
| CCGAGAC | 155 | 0.0 | 36.28973 | 25 |
| CGGAAGA | 170 | 0.0 | 35.734715 | 1 |
| AGAGCGG | 165 | 0.0 | 35.457676 | 5 |
| AGCGGTT | 170 | 0.0 | 34.414803 | 7 |
| ACCGCCT | 165 | 0.0 | 34.09036 | 30 |
| AATGCCG | 170 | 0.0 | 33.087696 | 21 |