Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378948.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1307954 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACTTGAATCTCGTATGCC | 8327 | 0.636643184699156 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 3960 | 0.3027629412043543 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCGACTT | 1075 | 0.0 | 36.417797 | 31 |
| CGACTTG | 1095 | 0.0 | 35.752636 | 32 |
| ACCGACT | 1105 | 0.0 | 35.225468 | 30 |
| GACCGAC | 1115 | 0.0 | 34.909542 | 29 |
| CGTATGC | 1105 | 0.0 | 34.61462 | 44 |
| TCGTATG | 1105 | 0.0 | 34.61462 | 43 |
| CTCGTAT | 1115 | 0.0 | 34.306797 | 42 |
| AGACCGA | 1145 | 0.0 | 33.994884 | 28 |
| ATCTCGT | 1120 | 0.0 | 33.95274 | 40 |
| TCTCGTA | 1120 | 0.0 | 33.95274 | 41 |
| GAGACCG | 1170 | 0.0 | 33.268497 | 27 |
| GTATGCC | 1180 | 0.0 | 32.98656 | 45 |
| AATCTCG | 1205 | 0.0 | 31.744465 | 39 |
| CGAGACC | 1335 | 0.0 | 29.999336 | 26 |
| GATCGGA | 650 | 0.0 | 28.383987 | 18 |
| ATCGGAA | 650 | 0.0 | 28.383987 | 19 |
| TCGGAAG | 645 | 0.0 | 28.25519 | 20 |
| AGATCGG | 660 | 0.0 | 27.95393 | 17 |
| GACTTGA | 1455 | 0.0 | 27.525164 | 33 |
| GAATCTC | 1420 | 0.0 | 27.255003 | 38 |