Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379101.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1023918 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACAGATCTCGTATGCC | 2816 | 0.27502202324795544 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACAGATCTCGTATGCCGTC | 2658 | 0.2595911000685602 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 300 | 0.0 | 35.245144 | 43 |
| ATGCCGT | 345 | 0.0 | 30.64795 | 44 |
| TGCCGTC | 385 | 0.0 | 27.463747 | 45 |
| CGGAAGA | 620 | 0.0 | 23.245312 | 1 |
| TCGTATG | 615 | 0.0 | 22.679802 | 43 |
| TCTCGTA | 605 | 0.0 | 22.310974 | 41 |
| CTCGTAT | 610 | 0.0 | 22.1281 | 42 |
| GACCGTG | 665 | 0.0 | 21.654324 | 29 |
| CGTATGC | 625 | 0.0 | 21.597023 | 44 |
| AGACCGT | 670 | 0.0 | 21.1569 | 28 |
| CGTGACA | 660 | 0.0 | 21.137579 | 32 |
| ATCTCGT | 645 | 0.0 | 20.927347 | 40 |
| GTATGCC | 645 | 0.0 | 20.927347 | 45 |
| CCGTGAC | 670 | 0.0 | 20.822092 | 31 |
| GAGACCG | 685 | 0.0 | 20.361162 | 27 |
| CCGAGAC | 740 | 0.0 | 19.153702 | 25 |
| ACCGTGA | 730 | 0.0 | 19.109755 | 30 |
| AGATCTC | 805 | 0.0 | 17.60541 | 38 |
| GAAGAGC | 830 | 0.0 | 17.088476 | 3 |
| GAGCGGT | 835 | 0.0 | 16.98615 | 6 |