FastQCFastQC Report
Mon 6 Jun 2016
ERR1379284.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379284.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418197
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGGTAAATCTCGTATGCC7680.18364550678268854Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGTA800.044.99605632
TCTCGTA800.044.99605641
CCGCGGT800.044.99605631
CTCGTAT900.042.49627342
GCGGTAA850.042.36442633
CGTATGC900.039.9964944
ACCGCGG900.039.9964930
GACCGCG900.039.9964929
CGGTAAA950.037.9050134
AATGCCG950.037.8914121
TCGTATG950.037.8914143
AGCGGTT1000.035.996847
ATCTCGT1100.034.77383440
CGGAAGA1050.034.2991141
AGAGCGG1050.034.2868085
GAGCGGT1050.034.2827076
ATGCCGA1050.034.28270722
TGCCGAG1050.034.28270723
GAGACCG1150.033.2579527
AAGAGCG1100.032.732234