Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378859.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 829071 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3103 | 0.37427433838597657 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTGTATCTCGTATGCCGTC | 2346 | 0.2829673212547538 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTGTATCTCGTATGCC | 2321 | 0.27995189796772535 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 285 | 0.0 | 37.890675 | 43 |
| GATCGGA | 385 | 0.0 | 32.13941 | 26 |
| ATCGGAA | 385 | 0.0 | 32.13941 | 27 |
| TCGGAAG | 405 | 0.0 | 31.663273 | 28 |
| ATGCCGT | 350 | 0.0 | 30.853834 | 44 |
| AGATCGG | 415 | 0.0 | 29.27397 | 25 |
| TGCCGTC | 385 | 0.0 | 28.633293 | 45 |
| AATGCCG | 895 | 0.0 | 27.14629 | 18 |
| ATGCCGA | 920 | 0.0 | 26.165672 | 19 |
| TGCCGAG | 925 | 0.0 | 26.024237 | 20 |
| CGTATGC | 455 | 0.0 | 23.733719 | 41 |
| CTCGTAT | 470 | 0.0 | 23.454933 | 39 |
| CCGAGAT | 530 | 0.0 | 23.346552 | 22 |
| TCTCGTA | 475 | 0.0 | 23.208038 | 38 |
| GAATGCC | 1050 | 0.0 | 23.13898 | 17 |
| ATCTCGT | 490 | 0.0 | 22.500301 | 37 |
| GCCGAGA | 1040 | 0.0 | 22.497587 | 21 |
| AGACCGT | 495 | 0.0 | 22.27034 | 25 |
| TCGTATG | 485 | 0.0 | 22.265654 | 40 |
| GTATGCC | 490 | 0.0 | 22.038452 | 42 |