FastQCFastQC Report
Mon 6 Jun 2016
ERR1390654.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390654.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences632041
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCTTCG206.9692574E-445.0804631
CTCGTAT659.094947E-1238.0665542
CGTATGC801.0004442E-1030.9290744
TCGTATG801.0004442E-1030.9290743
AACGGGT453.4929915E-529.99419812
GACGTTG300.005152386629.99182739
TAGGACG300.005152386629.99182722
TCTCGTA852.0372681E-1029.10971341
AGACCGT852.0372681E-1029.10971328
ATCTCGT903.965397E-1027.49250640
GACCGTT903.965397E-1027.49250629
GTATGCC957.421477E-1026.04553445
GATCGGA801.05499566E-725.30560118
GAGACCG1001.3460522E-924.74325627
TCGGAAG952.1176675E-823.67775720
ATCGGAA952.1176675E-823.67775719
ACCGTTT1052.3683242E-923.56500630
TGCTGCG500.002267077822.49386842
CGTTTCA1156.7757355E-921.51587532
AGATCGG955.538095E-721.30998217