Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378915.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1047050 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGCGAATCTCGTATGCC | 8838 | 0.8440857647676806 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 5015 | 0.4789647103767728 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 1230 | 0.0 | 37.684166 | 44 |
| GCGAATC | 1225 | 0.0 | 37.652504 | 36 |
| CGAAGCG | 1230 | 0.0 | 37.49944 | 32 |
| TCTCGTA | 1240 | 0.0 | 37.19703 | 41 |
| ATCTCGT | 1260 | 0.0 | 36.963737 | 40 |
| CCGAAGC | 1255 | 0.0 | 36.93172 | 31 |
| CTCGTAT | 1255 | 0.0 | 36.75244 | 42 |
| CGAATCT | 1250 | 0.0 | 36.719456 | 37 |
| AAGCGAA | 1275 | 0.0 | 36.3524 | 34 |
| AGCGAAT | 1275 | 0.0 | 36.3524 | 35 |
| TCGTATG | 1270 | 0.0 | 36.320095 | 43 |
| GTATGCC | 1300 | 0.0 | 36.17427 | 45 |
| GACCGAA | 1290 | 0.0 | 36.104115 | 29 |
| GAAGCGA | 1280 | 0.0 | 36.034622 | 33 |
| ACCGAAG | 1290 | 0.0 | 35.9297 | 30 |
| AGACCGA | 1295 | 0.0 | 35.790974 | 28 |
| AATCTCG | 1305 | 0.0 | 35.516716 | 39 |
| GAGACCG | 1315 | 0.0 | 35.246624 | 27 |
| AGATCGG | 680 | 0.0 | 34.080376 | 17 |
| TCGGAAG | 715 | 0.0 | 32.726788 | 20 |