Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378783.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 849345 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAACCATCTCGTATGCCGTC | 1564 | 0.1841418975798998 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAACCATCTCGTATGCC | 1314 | 0.15470745103579817 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 200 | 0.0 | 33.747437 | 43 |
| TGCCGTC | 210 | 0.0 | 33.211765 | 45 |
| CCGGCTA | 60 | 2.4193287E-7 | 29.997725 | 16 |
| ATGCCGT | 225 | 0.0 | 29.997723 | 44 |
| CGGCTAA | 75 | 1.6978975E-6 | 23.99818 | 17 |
| ACGCCCG | 55 | 0.0039374353 | 20.452993 | 12 |
| GACCGTT | 345 | 0.0 | 20.215858 | 26 |
| ACCGTTA | 345 | 0.0 | 20.215858 | 27 |
| CGTTAAC | 350 | 0.0 | 19.92706 | 29 |
| CCGTTAA | 350 | 0.0 | 19.92706 | 28 |
| GATCGGA | 125 | 1.7671482E-8 | 19.798498 | 26 |
| CGTATGC | 350 | 0.0 | 19.28425 | 41 |
| ATCGGAA | 130 | 2.7721399E-8 | 19.037018 | 27 |
| TCGTATG | 355 | 0.0 | 19.013762 | 40 |
| AGAGCGG | 525 | 0.0 | 18.864597 | 2 |
| GCGGTTC | 525 | 0.0 | 18.863487 | 5 |
| CGGAAGA | 335 | 0.0 | 18.81562 | 1 |
| TGCCGAG | 530 | 0.0 | 18.677828 | 20 |
| GAGCGGT | 535 | 0.0 | 18.511988 | 3 |
| CTCGTAT | 365 | 0.0 | 18.492838 | 39 |