Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379360.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 601796 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGCAGATCTCGTATGCC | 1114 | 0.1851125630612367 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CGTATGC | 150 | 0.0 | 42.0 | 44 |
| GACCGTA | 160 | 0.0 | 40.78125 | 29 |
| CCGTAGC | 165 | 0.0 | 39.545456 | 31 |
| TCGTATG | 165 | 0.0 | 39.545456 | 43 |
| ATCTCGT | 170 | 0.0 | 38.38235 | 40 |
| TCTCGTA | 170 | 0.0 | 38.38235 | 41 |
| ACCGTAG | 165 | 0.0 | 38.18182 | 30 |
| CGTAGCA | 175 | 0.0 | 37.285713 | 32 |
| CTCGTAT | 180 | 0.0 | 36.250004 | 42 |
| AGACCGT | 175 | 0.0 | 36.0 | 28 |
| GAGCGGT | 185 | 0.0 | 35.27027 | 6 |
| AGAGCGG | 185 | 0.0 | 35.27027 | 5 |
| GTATGCC | 180 | 0.0 | 35.000004 | 45 |
| CGGTTCA | 205 | 0.0 | 32.92683 | 9 |
| AGCGGTT | 200 | 0.0 | 32.625 | 7 |
| AATGCCG | 195 | 0.0 | 32.307693 | 21 |
| ATGCCGA | 195 | 0.0 | 32.307693 | 22 |
| GAGACCG | 190 | 0.0 | 31.973684 | 27 |
| CCGAGAC | 190 | 0.0 | 31.973684 | 25 |
| CGGAAGA | 210 | 0.0 | 31.071428 | 1 |