Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378868.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 999404 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2326 | 0.23273871227251441 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTACTGATCTCGTATGCC | 1825 | 0.18260883486557988 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTACTGATCTCGTATGCCGTC | 1820 | 0.18210853668786597 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 215 | 0.0 | 36.624935 | 43 |
| GCGTATA | 25 | 0.0021083343 | 35.995277 | 21 |
| TGCCGTC | 230 | 0.0 | 34.23635 | 45 |
| ATGCCGT | 250 | 0.0 | 32.39737 | 44 |
| GATCGGA | 335 | 0.0 | 31.561443 | 26 |
| ATCGGAA | 345 | 0.0 | 30.64662 | 27 |
| AGATCGG | 360 | 0.0 | 30.620985 | 25 |
| CCGTTCA | 30 | 0.0051515037 | 29.994564 | 18 |
| TCGGAAG | 395 | 0.0 | 27.339552 | 28 |
| AATGCCG | 790 | 0.0 | 24.489231 | 18 |
| ATGCCGA | 840 | 0.0 | 23.300514 | 19 |
| TGCCGAG | 845 | 0.0 | 22.896404 | 20 |
| CTCGTAT | 395 | 0.0 | 21.643812 | 42 |
| TCTCGTA | 400 | 0.0 | 21.373266 | 41 |
| ATCTCGT | 405 | 0.0 | 21.109398 | 40 |
| CGTATGC | 405 | 0.0 | 21.109398 | 44 |
| AGACCGT | 430 | 0.0 | 20.928534 | 28 |
| ACCGTTA | 420 | 0.0 | 20.893251 | 30 |
| TCGTATG | 410 | 0.0 | 20.851965 | 43 |
| CCGTTAC | 415 | 0.0 | 20.605892 | 31 |