FastQCFastQC Report
Mon 6 Jun 2016
ERR1378866.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378866.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences863103
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT26890.31155030164418385Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTATGATCTCGTATGCC25000.28965256753828916Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTATGATCTCGTATGCCGTC22020.2551259814877251Illumina Paired End PCR Primer 2 (96% over 32bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC3250.035.30205545
TATGCCG3200.033.7446143
ATGCCGT3350.032.23365844
GATCGGA3600.028.74374626
ATCGGAA3750.026.99412727
AGATCGG3900.026.53422425
TCGGAAG4500.025.9943428
GTCGGAA602.4704542E-422.49510427
AATGCCG10400.021.84620718
GAGATCG5000.021.14662424
TGCCGAG10550.021.11037420
AGGTCGG754.6065907E-520.99664725
GGTCGGA754.6086476E-520.9954326
CCGAGAT4950.020.90575422
ATGCCGA10800.020.83000819
TCGTATG5750.019.95333543
CTCGTAT5650.019.90832542
TCTCGTA5650.019.90832541
CCGCTTA5900.019.82734331
CGCTTAT5900.019.82734332