Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379086.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1015818 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTATAATCTCGTATGCC | 4174 | 0.41090037782358657 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTATAATCTCGTATGCCGTC | 3736 | 0.3677824177165595 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 445 | 0.0 | 36.907207 | 43 |
| ATGCCGT | 495 | 0.0 | 33.179203 | 44 |
| TGCCGTC | 500 | 0.0 | 32.847412 | 45 |
| AACCGCT | 45 | 0.0012280768 | 24.994339 | 12 |
| CGGAAGA | 855 | 0.0 | 24.505535 | 1 |
| ACCGAGT | 910 | 0.0 | 23.242218 | 30 |
| TCTCGTA | 925 | 0.0 | 22.863064 | 41 |
| TCGTATG | 925 | 0.0 | 22.863064 | 43 |
| CGAGTAT | 930 | 0.0 | 22.743502 | 32 |
| CGTATGC | 930 | 0.0 | 22.740145 | 44 |
| AGACCGA | 935 | 0.0 | 22.61854 | 28 |
| CTCGTAT | 945 | 0.0 | 22.37919 | 42 |
| GTATGCC | 975 | 0.0 | 22.1521 | 45 |
| GAGTATA | 1030 | 0.0 | 21.627705 | 33 |
| GACCGAG | 980 | 0.0 | 21.35246 | 29 |
| AATCTCG | 1015 | 0.0 | 20.835796 | 39 |
| GAGACCG | 1010 | 0.0 | 20.71313 | 27 |
| ATCTCGT | 1035 | 0.0 | 20.433174 | 40 |
| CCGAGTA | 1040 | 0.0 | 20.121578 | 31 |
| GAAGAGC | 1085 | 0.0 | 19.712496 | 3 |