Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1378796.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 1684989 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTGTATCTCGTATGCCGTC | 1808 | 0.10730040374150811 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTTGTATCTCGTATGCC | 1701 | 0.10095021391831045 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 265 | 0.0 | 39.05395 | 43 |
| ATGCCGT | 295 | 0.0 | 35.08236 | 44 |
| TGCCGTC | 320 | 0.0 | 34.450783 | 45 |
| TCGGAAG | 155 | 0.0 | 26.128807 | 28 |
| TGCCGAG | 575 | 0.0 | 25.041777 | 20 |
| CGCTTAG | 45 | 0.001227278 | 24.9983 | 25 |
| ATGCCGA | 585 | 0.0 | 24.613712 | 19 |
| AATGCCG | 595 | 0.0 | 24.200035 | 18 |
| TCTCGTA | 430 | 0.0 | 24.068132 | 38 |
| ATCGGAA | 170 | 0.0 | 23.822617 | 27 |
| CTCGTAT | 435 | 0.0 | 23.791487 | 39 |
| GATCGGA | 175 | 0.0 | 23.141285 | 26 |
| CGTATGC | 450 | 0.0 | 22.998438 | 41 |
| GACCGTG | 465 | 0.0 | 22.74039 | 26 |
| GAGACCG | 465 | 0.0 | 22.74039 | 24 |
| GCGGTTC | 665 | 0.0 | 22.337265 | 5 |
| TATCTCG | 465 | 0.0 | 22.256554 | 36 |
| AGACCGT | 465 | 0.0 | 22.256554 | 25 |
| TCGTATG | 465 | 0.0 | 22.256554 | 40 |
| ATCTCGT | 485 | 0.0 | 21.80264 | 37 |