Basic Statistics
| Measure | Value |
|---|---|
| Filename | ERR1379134.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 736212 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAACAATATCTCGTATGCC | 4922 | 0.6685574263934845 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
| AAGAGCGGTTCAGCAGGAATGCCGAGACCGAACAATATCTCGTATGCCGTC | 4465 | 0.6064829152472385 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TATGCCG | 550 | 0.0 | 39.679 | 43 |
| TGCCGTC | 560 | 0.0 | 38.970448 | 45 |
| ATGCCGT | 590 | 0.0 | 36.60757 | 44 |
| CGGAAGA | 885 | 0.0 | 28.515173 | 1 |
| GAAGAGC | 1010 | 0.0 | 25.197157 | 3 |
| CTCGTAT | 1060 | 0.0 | 23.13515 | 42 |
| GGAAGAG | 1105 | 0.0 | 23.04499 | 2 |
| GACCGAA | 1115 | 0.0 | 22.599295 | 29 |
| CGTATGC | 1080 | 0.0 | 22.498404 | 44 |
| TCGTATG | 1080 | 0.0 | 22.498404 | 43 |
| TCTCGTA | 1095 | 0.0 | 22.395672 | 41 |
| CGAACAA | 1130 | 0.0 | 22.302334 | 32 |
| ACCGAAC | 1140 | 0.0 | 22.30105 | 30 |
| CCGAACA | 1140 | 0.0 | 22.106697 | 31 |
| AGACCGA | 1140 | 0.0 | 22.102194 | 28 |
| ATCTCGT | 1145 | 0.0 | 21.810678 | 40 |
| GTATGCC | 1115 | 0.0 | 21.590397 | 45 |
| GAGACCG | 1180 | 0.0 | 21.348614 | 27 |
| TATCTCG | 1150 | 0.0 | 21.324575 | 39 |
| CAATATC | 1220 | 0.0 | 20.655676 | 36 |