Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142845_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 336894 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 524 | 0.15553853734409043 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 476 | 0.14129073239654016 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 376 | 0.11160780542247709 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATTCCG | 30 | 0.0042274115 | 59.523216 | 5 |
CTAGTAT | 80 | 0.0053427746 | 29.766037 | 3 |
GTGATCG | 145 | 4.0809864E-6 | 28.701176 | 8 |
GTATAAG | 230 | 2.6011548E-10 | 28.501554 | 1 |
ATTACTC | 90 | 0.009501469 | 26.454762 | 5 |
TGATCGC | 165 | 1.1136772E-5 | 25.222246 | 9 |
GTACAAA | 220 | 1.5087062E-7 | 24.379429 | 1 |
GGACTAA | 65 | 0.0020590588 | 22.869722 | 20-21 |
CCTCTCG | 160 | 2.6200817E-4 | 22.294664 | 8 |
ATTTAGG | 210 | 7.0405535E-5 | 19.86472 | 1 |
ATAGGAC | 150 | 0.0046844687 | 19.844025 | 3 |
CATGGGG | 1230 | 0.0 | 19.841072 | 4 |
AGGGCTA | 210 | 7.10536E-5 | 19.841072 | 5 |
TAGACGT | 110 | 1.0205258E-4 | 18.932161 | 56-57 |
ATAAGGT | 255 | 1.484428E-5 | 18.67673 | 3 |
ATATTGG | 160 | 0.0067608473 | 18.623175 | 1 |
TAAGGTG | 230 | 1.4280812E-4 | 18.11576 | 4 |
CCAGAAC | 265 | 2.067188E-5 | 17.971947 | 3 |
CCCCTTG | 235 | 1.6683545E-4 | 17.751451 | 1 |
GTATCAA | 2520 | 0.0 | 17.736357 | 1 |