Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142855_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 423324 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2571 | 0.6073362247356635 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1690 | 0.0 | 42.298645 | 1 |
GTATCAA | 2555 | 0.0 | 37.770786 | 1 |
ATCAACG | 3040 | 0.0 | 30.739592 | 3 |
TATCAAC | 3095 | 0.0 | 30.577955 | 2 |
CAACGCA | 3135 | 0.0 | 29.808088 | 5 |
AACGCAG | 3220 | 0.0 | 28.812508 | 6 |
TCAACGC | 3245 | 0.0 | 28.797642 | 4 |
ACGCAGA | 3575 | 0.0 | 25.94834 | 7 |
CGCAGAG | 3670 | 0.0 | 25.27964 | 8 |
CATGGGT | 1400 | 0.0 | 24.233648 | 4 |
GCAGAGT | 3780 | 0.0 | 24.229324 | 9 |
GTGTAAG | 130 | 0.00203594 | 22.911766 | 1 |
CCGCACA | 130 | 0.0020457758 | 22.892786 | 4 |
TGATCGC | 130 | 0.0020556508 | 22.873837 | 9 |
CAGAGTA | 3750 | 0.0 | 21.964985 | 10-11 |
GTACACT | 410 | 1.8189894E-12 | 21.776064 | 4 |
GTACATG | 4805 | 0.0 | 21.19994 | 1 |
TACATGG | 4840 | 0.0 | 20.660265 | 2 |
TATTCTC | 260 | 7.6451397E-7 | 20.603506 | 5 |
ATACCAT | 175 | 4.7917402E-4 | 20.390392 | 6 |