Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142542_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 285787 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 666 | 0.23304069114410383 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 665 | 0.23269078019644 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 405 | 0.14171393380384692 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGTAAG | 85 | 0.007160755 | 28.032484 | 1 |
GTATCAA | 1930 | 0.0 | 27.161009 | 1 |
GAGTAAT | 110 | 7.6846004E-4 | 27.076834 | 1 |
CATGGGT | 740 | 0.0 | 26.550577 | 4 |
ACCGAGG | 90 | 0.009495979 | 26.456537 | 8 |
ATGGGGC | 335 | 1.8189894E-12 | 24.881409 | 5 |
ATGGGTG | 390 | 0.0 | 24.425707 | 5 |
AACGCAG | 2140 | 0.0 | 23.353521 | 6 |
TATCAAC | 2245 | 0.0 | 23.337702 | 2 |
GGTATCA | 1455 | 0.0 | 23.336323 | 1 |
ATCAACG | 2145 | 0.0 | 23.315447 | 3 |
ATGGGTT | 155 | 2.0918797E-4 | 23.046835 | 5 |
AGCCGTA | 65 | 0.0020601118 | 22.866983 | 110-111 |
CAACGCA | 2170 | 0.0 | 22.772469 | 5 |
GTACATG | 3070 | 0.0 | 22.120096 | 1 |
TACATGG | 3055 | 0.0 | 22.022114 | 2 |
ACATGGG | 3075 | 0.0 | 21.491642 | 3 |
TCAACGC | 2310 | 0.0 | 21.392319 | 4 |
ACGCAGA | 2310 | 0.0 | 21.381058 | 7 |
CGCAGAG | 2395 | 0.0 | 20.62947 | 8 |