Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142618_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 573906 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3044 | 0.5304004488539935 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2959 | 0.5155896610246278 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2140 | 0.3728833641746209 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 867 | 0.151070035859531 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 701 | 0.1221454384515931 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 689 | 0.12005450369921207 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 608 | 0.10594069412063996 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3020 | 0.0 | 39.586292 | 1 |
GTATCAA | 4175 | 0.0 | 32.053963 | 1 |
TATCAAC | 5185 | 0.0 | 26.151941 | 2 |
ATCAACG | 5220 | 0.0 | 25.862661 | 3 |
CAACGCA | 5245 | 0.0 | 25.626 | 5 |
TCAACGC | 5330 | 0.0 | 25.440493 | 4 |
AACGCAG | 5585 | 0.0 | 24.59839 | 6 |
GAGTACT | 2755 | 0.0 | 22.666557 | 12-13 |
ACGCAGA | 6055 | 0.0 | 22.296135 | 7 |
GTAAGTA | 405 | 0.0 | 22.026937 | 2 |
CGCAGAG | 6185 | 0.0 | 21.731346 | 8 |
TAGAACG | 170 | 3.942504E-4 | 20.990374 | 7 |
CATGGGG | 2695 | 0.0 | 20.964415 | 4 |
GCAGAGT | 6555 | 0.0 | 20.50471 | 9 |
CAGAGTA | 6505 | 0.0 | 19.702341 | 10-11 |
GTACTTT | 3180 | 0.0 | 19.54371 | 14-15 |
AGTACTT | 2880 | 0.0 | 19.51449 | 12-13 |
ATGGGAG | 490 | 0.0 | 19.419666 | 5 |
TGTAAGT | 430 | 4.9112714E-11 | 19.3649 | 1 |
TAACACT | 215 | 8.582766E-5 | 19.363214 | 4 |