Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142724_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 283272 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 598 | 0.21110452144934905 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 562 | 0.19839588805106045 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 470 | 0.16591826936654522 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 335 | 0.11826089412296309 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTTACT | 75 | 0.0038823758 | 31.771902 | 1 |
GTCTAGC | 80 | 0.005323725 | 29.78616 | 1 |
GTAAGTA | 80 | 0.005323725 | 29.78616 | 5 |
GTACAAA | 195 | 4.701542E-8 | 27.494913 | 1 |
TATACTG | 90 | 0.009460828 | 26.476585 | 5 |
GCACCGC | 115 | 9.958463E-4 | 25.901007 | 6 |
ACATAGC | 120 | 0.0012763881 | 24.821798 | 8 |
GTAAAAA | 275 | 2.07001E-9 | 23.828924 | 1 |
GAAATAA | 140 | 0.0031277228 | 21.275827 | 1 |
CATGGGC | 485 | 0.0 | 20.881018 | 4 |
GTACTGG | 145 | 0.0038331905 | 20.54218 | 1 |
TAACCTC | 210 | 7.055329E-5 | 19.857437 | 4 |
GTATCAA | 2360 | 0.0 | 19.689156 | 1 |
GGTATCA | 1975 | 0.0 | 19.60608 | 1 |
CATGGGT | 335 | 0.0 | 19.561058 | 4 |
ACAGCGG | 190 | 8.2329597E-4 | 18.81231 | 8 |
ATGTGAG | 165 | 0.008087802 | 18.052217 | 7 |
GTATGTG | 165 | 0.008087802 | 18.052217 | 9 |
AACGCAG | 2570 | 0.0 | 17.616716 | 6 |
TGTAGCT | 305 | 3.4862333E-6 | 17.578716 | 2 |