FastQCFastQC Report
Sun 1 Jan 2017
ERR1142556_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1142556_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458316
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA15420.3364490875291284No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN7420.16189703174229134No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA4600.10036743207743129No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAACCTA750.003886114331.7698215
TATTAGT1152.7367158E-531.0825774
GTATTAC1254.8201517E-528.6085111
GTATATA1755.6040335E-727.24621
GGTATCA25550.025.4266781
GTATAAT1552.0795182E-423.0713791
CATGGGG19700.022.3784054
ATTTAGG2254.990494E-621.191491
GTATCAA31200.021.0131951
GGCTATT2701.0902932E-619.8561387
GTCGTGC905.790937E-419.82898340-41
ATGGGGG12050.019.7737485
TAGGGCT4254.0017767E-1119.6246874
TTAGGGC4207.239578E-1018.4398633
GGGCTAT2601.7476974E-518.3287436
CTATTGA2601.7493472E-518.3267369
ACATGGG44950.018.2899723
AACGCAG35050.018.0149847
TATCAAC35750.017.9974632
GTACATG48600.017.7822111