Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142457_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 354864 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 780 | 0.21980251589341268 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 615 | 0.17330582983903692 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 495 | 0.1394900581631273 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 389 | 0.10961945984940709 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGTAAG | 30 | 0.004211246 | 59.581482 | 1 |
TCTAACG | 85 | 0.0071755513 | 28.022488 | 2 |
GGTATCA | 1790 | 0.0 | 27.627167 | 1 |
CTAACGC | 90 | 0.00948303 | 26.465685 | 3 |
TATTCTC | 215 | 1.2175042E-7 | 24.92698 | 5 |
GTATCAA | 2295 | 0.0 | 23.365288 | 1 |
CATGGGG | 1430 | 0.0 | 23.319412 | 4 |
TCTACAC | 155 | 2.0908604E-4 | 23.050756 | 3 |
TGGGGGG | 475 | 0.0 | 22.559097 | 6 |
GTACATG | 3450 | 0.0 | 20.896694 | 1 |
ATCAACG | 2505 | 0.0 | 20.44355 | 3 |
GTACAAA | 350 | 1.4988473E-9 | 20.427937 | 1 |
ATGGGGG | 875 | 0.0 | 20.416384 | 5 |
TATCAAC | 2550 | 0.0 | 20.316303 | 2 |
ACATGGG | 3300 | 0.0 | 20.210157 | 3 |
CAACGCA | 2510 | 0.0 | 20.165585 | 5 |
CATGGGT | 415 | 1.8189894E-12 | 20.08841 | 4 |
AACGAAT | 90 | 5.774125E-4 | 19.836643 | 30-31 |
TACATGG | 3535 | 0.0 | 19.708887 | 2 |
TCAACGC | 2600 | 0.0 | 19.696577 | 4 |