FastQCFastQC Report
Sun 1 Jan 2017
ERR1142845_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1142845_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences336894
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5240.15553853734409043No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA4760.14129073239654016No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT3760.11160780542247709No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATTCCG300.004227411559.5232165
CTAGTAT800.005342774629.7660373
GTGATCG1454.0809864E-628.7011768
GTATAAG2302.6011548E-1028.5015541
ATTACTC900.00950146926.4547625
TGATCGC1651.1136772E-525.2222469
GTACAAA2201.5087062E-724.3794291
GGACTAA650.002059058822.86972220-21
CCTCTCG1602.6200817E-422.2946648
ATTTAGG2107.0405535E-519.864721
ATAGGAC1500.004684468719.8440253
CATGGGG12300.019.8410724
AGGGCTA2107.10536E-519.8410725
TAGACGT1101.0205258E-418.93216156-57
ATAAGGT2551.484428E-518.676733
ATATTGG1600.006760847318.6231751
TAAGGTG2301.4280812E-418.115764
CCAGAAC2652.067188E-517.9719473
CCCCTTG2351.6683545E-417.7514511
GTATCAA25200.017.7363571