Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142654_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 448822 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3172 | 0.7067389744709484 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2754 | 0.6136062848969079 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1693 | 0.37720967332260896 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 698 | 0.15551822326000064 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 684 | 0.1523989465757026 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 467 | 0.10405015796908351 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2265 | 0.0 | 44.647213 | 1 |
GTATCAA | 3600 | 0.0 | 42.631523 | 1 |
GTACTAG | 140 | 8.063944E-8 | 33.991913 | 1 |
CAACGCA | 4655 | 0.0 | 33.597313 | 5 |
TCAACGC | 4690 | 0.0 | 33.34659 | 4 |
ATCAACG | 4660 | 0.0 | 33.178436 | 3 |
AACGCAG | 4790 | 0.0 | 32.77456 | 6 |
TATCAAC | 4785 | 0.0 | 32.43598 | 2 |
ACGCAGA | 5305 | 0.0 | 29.25658 | 7 |
CGCAGAG | 5445 | 0.0 | 28.504347 | 8 |
GCAGAGT | 5695 | 0.0 | 27.253057 | 9 |
GAGTACT | 2570 | 0.0 | 26.493591 | 12-13 |
AGTACTT | 2695 | 0.0 | 25.26476 | 12-13 |
GTACTTT | 2915 | 0.0 | 23.663986 | 14-15 |
AGAGTAC | 5610 | 0.0 | 23.001987 | 10-11 |
CAGAGTA | 5645 | 0.0 | 22.648684 | 10-11 |
CTTAGGC | 160 | 2.6179416E-4 | 22.299736 | 3 |
GAGTTAG | 140 | 0.0031570522 | 21.244946 | 1 |
TACTTTT | 3290 | 0.0 | 20.87635 | 14-15 |
ACATGGG | 4125 | 0.0 | 20.759027 | 3 |