Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142735_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 818689 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2874 | 0.3510490552578574 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1610 | 0.1966558729871783 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1895 | 0.0 | 62.87623 | 1 |
GTATCAA | 3065 | 0.0 | 45.094463 | 1 |
ATCAACG | 4025 | 0.0 | 33.74696 | 3 |
CAACGCA | 4105 | 0.0 | 33.379543 | 5 |
TATCAAC | 4135 | 0.0 | 33.137367 | 2 |
TCAACGC | 4135 | 0.0 | 32.99329 | 4 |
AACGCAG | 4315 | 0.0 | 32.03314 | 6 |
GTGGTAT | 930 | 0.0 | 31.389095 | 1 |
TGGTATC | 980 | 0.0 | 30.395523 | 2 |
ACGCAGA | 5040 | 0.0 | 27.072216 | 7 |
CGCAGAG | 5120 | 0.0 | 26.765589 | 8 |
GCAGAGT | 5480 | 0.0 | 24.898539 | 9 |
CAGAGTA | 5385 | 0.0 | 23.235525 | 10-11 |
AGAGTAC | 5210 | 0.0 | 21.785933 | 10-11 |
GAGTACA | 5755 | 0.0 | 21.275778 | 12-13 |
CTAACGC | 150 | 0.0046704873 | 19.85841 | 3 |
GTACTAG | 150 | 0.0046704873 | 19.85841 | 1 |
AGTACAT | 5690 | 0.0 | 19.581604 | 12-13 |
GTACATG | 6630 | 0.0 | 19.49898 | 1 |
GTAATAC | 220 | 1.01115744E-4 | 18.955753 | 3 |