Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142632_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 732897 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1264 | 0.17246625378463823 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1126 | 0.15363686848220146 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2285 | 0.0 | 34.42221 | 1 |
GTATCAA | 3120 | 0.0 | 28.838549 | 1 |
TATCAAC | 3760 | 0.0 | 23.921661 | 2 |
CAACGCA | 3690 | 0.0 | 23.89118 | 5 |
ATCAACG | 3715 | 0.0 | 23.890745 | 3 |
AACGCAG | 3820 | 0.0 | 23.701862 | 6 |
ACCGTCC | 155 | 2.0913096E-4 | 23.05485 | 8 |
TCAACGC | 3920 | 0.0 | 22.641357 | 4 |
CATGGGG | 3085 | 0.0 | 20.660025 | 4 |
ACGCAGA | 4305 | 0.0 | 20.613695 | 7 |
ATGGGGG | 1665 | 0.0 | 20.034386 | 5 |
CGCAGAG | 4445 | 0.0 | 19.830456 | 8 |
GTACATG | 5615 | 0.0 | 18.995655 | 1 |
TACATGG | 5800 | 0.0 | 18.486162 | 2 |
ACATGGG | 5560 | 0.0 | 18.319918 | 3 |
TTAGGCC | 165 | 0.008110734 | 18.047987 | 9 |
CTAGTAC | 270 | 2.42186E-5 | 17.64934 | 3 |
CAGAGTA | 4650 | 0.0 | 17.610138 | 10-11 |
GTACTAG | 205 | 0.0013715985 | 17.440077 | 1 |
GCAGAGT | 4860 | 0.0 | 17.401825 | 9 |