Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142535_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23525 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 97 | 0.412327311370882 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 63 | 0.26780021253985126 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 55 | 0.23379383634431458 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 40 | 0.17003188097768332 | No Hit |
GCTGCTAGCTGGAGCCACCCGCAGTTCGAAAAAGTGAGCAAGGGCGAGGA | 35 | 0.1487778958554729 | No Hit |
GTACATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG | 33 | 0.14027630180658873 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 29 | 0.1232731137088204 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 27 | 0.11477151965993623 | No Hit |
GGTATCAACGCAGAGTACATGGGACTGCTGCTAGCTCCTCGCCCTTGCTC | 26 | 0.11052072263549415 | No Hit |
GGTATCAACGCAGAGTACATGGGACTGCTCCTCGCCCTTGCTCACTTTTT | 26 | 0.11052072263549415 | No Hit |
GTACATGGGACTGCTGCTAGCTCCTCGCCCTTGCTCACTTTTTCGAACTG | 24 | 0.10201912858660998 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGGGGGC | 20 | 8.382895E-4 | 89.2339 | 6 |
GTACAAA | 55 | 1.8189894E-11 | 86.715935 | 1 |
AGCCTAA | 20 | 1.7372804E-4 | 59.617203 | 24-25 |
AACGAGG | 15 | 0.0041783806 | 59.617203 | 30-31 |
CCTAACG | 20 | 1.7372804E-4 | 59.617203 | 26-27 |
ACACACG | 15 | 0.004250115 | 59.36188 | 86-87 |
TACAAAA | 90 | 1.4879333E-9 | 52.993073 | 2 |
GGCAAGC | 25 | 5.2286853E-4 | 47.693764 | 20-21 |
GTAACAA | 95 | 1.3835961E-7 | 43.928467 | 1 |
AAACATG | 80 | 3.6379788E-12 | 40.986828 | 14-15 |
CACAAAG | 60 | 0.0012699153 | 39.7448 | 8 |
ACAACAC | 135 | 1.1878001E-9 | 39.7448 | 5 |
TCAACAC | 110 | 4.3735236E-7 | 37.93822 | 4 |
TAACAAC | 65 | 0.0018818693 | 36.68751 | 2 |
CAGAGAA | 50 | 1.0265163E-5 | 35.770325 | 10-11 |
TTTTGTG | 35 | 0.0027351724 | 34.06697 | 24-25 |
AGAACAT | 35 | 0.0027351724 | 34.06697 | 12-13 |
ACACAGA | 70 | 0.0027071838 | 34.06697 | 8 |
GGGGGCT | 70 | 0.0027071838 | 34.06697 | 7 |
CATGGGT | 70 | 0.0027071838 | 34.06697 | 4 |