Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142483_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 818369 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1937 | 0.23669029496474087 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1767 | 0.2159172695935452 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2085 | 0.0 | 41.444233 | 1 |
GTATCAA | 2865 | 0.0 | 30.577 | 1 |
GTTTACG | 90 | 0.009454372 | 26.486197 | 1 |
TATACGT | 90 | 0.009474206 | 26.474815 | 2 |
TACGAGT | 115 | 9.978554E-4 | 25.899275 | 4 |
ATCAACG | 3505 | 0.0 | 24.3032 | 4 |
TCAACGC | 3575 | 0.0 | 24.160582 | 5 |
CAACGCA | 3570 | 0.0 | 23.509668 | 6 |
TATCAAC | 3680 | 0.0 | 23.309347 | 2 |
AACGCAG | 3710 | 0.0 | 22.478615 | 7 |
GTACATG | 5690 | 0.0 | 20.6327 | 1 |
CATGGGT | 1115 | 0.0 | 20.301315 | 4 |
ACGCAGA | 4165 | 0.0 | 20.026657 | 8 |
TACATGG | 5835 | 0.0 | 20.009243 | 2 |
ACATGGG | 5850 | 0.0 | 19.65246 | 3 |
ATAAGAC | 215 | 8.4830994E-5 | 19.39434 | 3 |
CCGTCGA | 185 | 6.876656E-4 | 19.32895 | 9 |
CGCAGAG | 4370 | 0.0 | 19.093054 | 9 |
GTCTAGT | 160 | 0.0067690806 | 18.623106 | 1 |
CAGAGTA | 4485 | 0.0 | 18.470606 | 10-11 |