Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142880_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 501527 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1502 | 0.29948537167490485 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 682 | 0.13598470271789953 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 532 | 0.10607604376234978 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATGGGCG | 135 | 2.324061E-6 | 30.856981 | 5 |
ATCGCAA | 90 | 0.009544051 | 26.432993 | 9 |
TGGGGGG | 755 | 0.0 | 25.992765 | 6 |
CATGGGG | 1965 | 0.0 | 25.439342 | 4 |
CCGATAA | 120 | 0.0012900996 | 24.780933 | 9 |
TAGGAAC | 125 | 0.0016306646 | 23.803955 | 4 |
ATGGGGG | 1140 | 0.0 | 23.490747 | 5 |
GTCTTAT | 155 | 2.0973253E-4 | 23.042994 | 1 |
GTATTAT | 170 | 3.917007E-4 | 21.009789 | 1 |
GTACTAG | 170 | 3.917007E-4 | 21.009789 | 1 |
GAAAAAA | 2125 | 0.0 | 20.729658 | 1 |
GTATCAA | 3450 | 0.0 | 20.7053 | 1 |
TATTCTC | 265 | 9.203068E-7 | 20.210907 | 5 |
TACATGG | 4890 | 0.0 | 20.201723 | 2 |
GTACATG | 4885 | 0.0 | 20.106604 | 1 |
ACATGGG | 4720 | 0.0 | 20.046764 | 3 |
GTATATA | 180 | 5.759259E-4 | 19.842579 | 1 |
GTCGACA | 75 | 0.0047050384 | 19.833658 | 78-79 |
AACGCAG | 3590 | 0.0 | 19.215385 | 6 |
GCGTTAT | 155 | 0.005668491 | 19.202496 | 1 |