FastQCFastQC Report
Sun 1 Jan 2017
ERR1142643_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1142643_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences290533
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT25190.8670271535419385No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24340.8377705802783161No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10590.3645024833667776No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7690.2646859392908895No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5510.18965143374418741No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3660.12597536252336225No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3130.10773302860604475No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCAACG1450.073.886241
GCGCAGA2050.069.681331
GCGTACA359.12613E-568.022251
CGTACAT401.7744445E-459.468252
AACGCGT300.004242328559.4682466
GGTATCA17350.055.917421
ACGCGTG350.007806882350.9727827
GTATCAA28100.045.1161771
ATCAACG33750.037.354873
TATCAAC34700.036.3321842
CAACGCA35700.036.147365
TCAACGC36050.035.631464
AACGCAG36700.035.1624266
CGTACTT851.712711E-434.981322
ACGCAGA40500.031.8632347
GAATAGT750.00389946431.7437151
CGCAGAG42450.030.399558
GCGTACT1004.422075E-429.7597331
GCAGAGT44900.029.005679
TGGTATC9200.028.4413342