FastQCFastQC Report
Sun 1 Jan 2017
ERR1142507_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1142507_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520336
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA18610.35765351618953906No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN11480.22062667199655608No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA18600.038.7792321
ATTAGAC1001.0517588E-535.74593
GTATCAA26100.032.2036671
ATGGGTG6600.029.7882525
CATGGGT14500.027.117584
TACACGG900.00946475226.4784452
ATCAACG31800.025.6666053
AACGCAG32400.025.5491816
CAACGCA32950.025.1324215
GTATTAG1901.1473476E-625.0993881
TCAACGC32550.025.0752074
TATCAAC33650.024.7866552
GTACATG52200.023.0678771
TACATGG53100.022.5515562
ACATGGG51600.022.3989183
ACGCAGA38150.021.390317
CGCAGAG38800.020.8804668
CATGGGG23750.020.3187224
GCAGAGT40900.019.677929
ATGGGGG12150.019.1233225