Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142543_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 721003 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1616 | 0.22413221581602297 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1424 | 0.19750264562005984 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 2530 | 0.0 | 33.67256 | 1 |
GGTATCA | 1760 | 0.0 | 32.156704 | 1 |
ATCAACG | 3065 | 0.0 | 26.612078 | 3 |
TATCAAC | 3170 | 0.0 | 26.483707 | 2 |
TCTAACG | 90 | 0.0094944 | 26.462837 | 2 |
TCAACGC | 3040 | 0.0 | 26.439236 | 4 |
CAACGCA | 3085 | 0.0 | 26.053576 | 5 |
AACGCAG | 3115 | 0.0 | 25.408028 | 6 |
GTACATG | 4875 | 0.0 | 24.318628 | 1 |
CATGGGT | 1090 | 0.0 | 24.033382 | 4 |
CATGGGG | 2390 | 0.0 | 23.914541 | 4 |
ACATGGG | 4795 | 0.0 | 23.83973 | 3 |
TACATGG | 5010 | 0.0 | 23.65017 | 2 |
ACGCAGA | 3410 | 0.0 | 23.038664 | 7 |
CGCAGAG | 3540 | 0.0 | 22.531994 | 8 |
ATGGGGG | 1250 | 0.0 | 22.386003 | 5 |
ATTAGAC | 140 | 0.003143099 | 21.263302 | 3 |
TATACCC | 140 | 0.003143099 | 21.263302 | 5 |
GCAGAGT | 3765 | 0.0 | 21.197254 | 9 |
TGGGGGG | 790 | 0.0 | 21.09154 | 6 |