Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142662_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 581404 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1579 | 0.2715839588306926 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1074 | 0.18472525128826084 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1650 | 0.0 | 46.57619 | 1 |
GTATCAA | 2445 | 0.0 | 39.472477 | 1 |
TATCAAC | 3095 | 0.0 | 30.61045 | 2 |
ATCAACG | 3005 | 0.0 | 30.535812 | 3 |
TCAACGC | 3025 | 0.0 | 30.530897 | 4 |
CAACGCA | 3035 | 0.0 | 30.430302 | 5 |
AACGCAG | 3065 | 0.0 | 30.13245 | 6 |
TCTAGAC | 180 | 2.1644155E-8 | 29.792248 | 3 |
TTCGCGA | 40 | 0.005370286 | 29.740858 | 54-55 |
ACGCAGA | 3530 | 0.0 | 26.50075 | 7 |
CGCAGAG | 3625 | 0.0 | 25.80625 | 8 |
GTACATG | 5050 | 0.0 | 24.065619 | 1 |
GCAGAGT | 3905 | 0.0 | 23.650696 | 9 |
CATGGGG | 2530 | 0.0 | 23.551182 | 4 |
ACATGGG | 5065 | 0.0 | 23.057375 | 3 |
TACATGG | 5160 | 0.0 | 22.979292 | 2 |
CAGAGTA | 3945 | 0.0 | 21.22084 | 10-11 |
ATGGGGG | 1210 | 0.0 | 20.189787 | 5 |
AGAGTAC | 3725 | 0.0 | 19.994795 | 10-11 |
CATGGGT | 1440 | 0.0 | 19.861498 | 4 |