FastQCFastQC Report
Sun 1 Jan 2017
ERR1142631_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1142631_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences803095
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT46320.5767686263767051No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT42890.5340588597862022No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24820.3090543459989167No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12510.15577235569888992No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9140.11380969872804586No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA31850.065.1883851
GTATCAA47950.043.1654932
TATCAAC59400.035.2453883
ATCAACG61150.033.9449354
CAACGCA62600.033.1586766
TCAACGC64000.032.4333275
AACGCAG66400.031.261047
TATCACG800.005371575729.7382952
ACGCAGA72600.028.6732868
CGCAGAG75900.027.1915369
GAGTACT35450.026.59249512-13
CAGAGTA78700.025.35501510-11
CTCAACG4400.024.3373931
GTGGTAT13550.024.1478041
GCAGAGT79700.024.1040639
GTACTTT41300.022.82647314-15
CTATTAC2352.910383E-722.7839411
GTACATG63000.022.096811
ACATGGG62700.022.0072883
TACATGG65100.021.6527672