Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142649_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 618788 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1603 | 0.2590547974427429 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1236 | 0.19974530857094835 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1825 | 0.0 | 42.116516 | 1 |
GTATCAA | 2610 | 0.0 | 32.873623 | 1 |
TATCAAC | 3380 | 0.0 | 25.206333 | 2 |
ATCAACG | 3360 | 0.0 | 24.647104 | 3 |
CAACGCA | 3375 | 0.0 | 24.539549 | 5 |
AACGCAG | 3410 | 0.0 | 24.29162 | 6 |
TCAACGC | 3430 | 0.0 | 24.144102 | 4 |
GTACATG | 5260 | 0.0 | 22.428747 | 1 |
GGACTAA | 160 | 2.5847345E-4 | 22.34379 | 1 |
TACATGG | 5395 | 0.0 | 21.64487 | 2 |
ATGGGTA | 420 | 1.8189894E-12 | 21.2798 | 5 |
ACATGGG | 5375 | 0.0 | 21.060343 | 3 |
CATGGGT | 880 | 0.0 | 20.987919 | 4 |
ACGCAGA | 3925 | 0.0 | 20.800653 | 7 |
CGCAGAG | 4000 | 0.0 | 20.41064 | 8 |
CATGGGG | 2895 | 0.0 | 20.374031 | 4 |
GCAGAGT | 4285 | 0.0 | 19.192179 | 9 |
ATGGGGG | 1690 | 0.0 | 19.038496 | 5 |
CAGAGTA | 4180 | 0.0 | 18.890162 | 10-11 |
AGAGTAC | 4045 | 0.0 | 18.783985 | 10-11 |