Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142533_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 469901 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1013 | 0.21557732373414826 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 699 | 0.14875473770006875 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 677 | 0.1440729004620122 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 589 | 0.1253455515097861 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTAGCG | 45 | 3.1564108E-4 | 52.931496 | 3 |
ATTAACG | 35 | 0.0077686147 | 51.04108 | 3 |
TTAACGC | 70 | 0.0027763245 | 34.027386 | 4 |
GACCGGA | 85 | 0.0071590957 | 28.037535 | 1 |
GTACATA | 205 | 7.6488504E-8 | 26.15697 | 1 |
GTATGAT | 120 | 0.0012767138 | 24.824902 | 1 |
GTTAAGC | 130 | 0.0020344453 | 22.915293 | 1 |
CTATCCA | 165 | 3.1939102E-4 | 21.653793 | 4 |
GCTTAGT | 145 | 0.0038341312 | 20.544744 | 1 |
CATGGGG | 1705 | 0.0 | 19.907516 | 4 |
GGTATCA | 3060 | 0.0 | 19.859919 | 1 |
GCTATCC | 150 | 0.0046799565 | 19.849308 | 3 |
TACATAG | 190 | 8.26082E-4 | 18.80662 | 2 |
ACATTAC | 160 | 0.006774175 | 18.618675 | 1 |
TAAGAGA | 265 | 2.0652751E-5 | 17.976732 | 4 |
GTATAAG | 300 | 2.982546E-6 | 17.873928 | 1 |
GTATCAA | 3615 | 0.0 | 17.470137 | 1 |
ATACTAT | 460 | 2.4265319E-9 | 16.837759 | 1 |
AATCCTT | 355 | 8.0538666E-7 | 16.763315 | 6 |
ATGGGGC | 475 | 3.741661E-9 | 16.297327 | 5 |