Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142456_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 266595 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 573 | 0.21493276318010468 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 424 | 0.15904274273711058 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 372 | 0.13953750070331403 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 366 | 0.13728689585326057 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTACC | 55 | 8.4841566E-4 | 43.306248 | 9 |
AGAGGCG | 80 | 0.0053493874 | 29.75625 | 5 |
GCATAGC | 90 | 0.009480193 | 26.464928 | 1 |
CATGGGT | 355 | 3.6379788E-12 | 23.469719 | 4 |
TAAGGTG | 145 | 0.0038549881 | 20.521553 | 4 |
TCAAGAC | 150 | 0.0046908613 | 19.8375 | 3 |
ATGGGGG | 570 | 0.0 | 19.31546 | 18-19 |
GCTTGTA | 155 | 0.005651573 | 19.208416 | 1 |
TACTGAA | 155 | 0.0056638755 | 19.20119 | 7 |
GTTCCGA | 155 | 0.005670035 | 19.19758 | 6 |
GGTATCA | 1880 | 0.0 | 18.687336 | 1 |
ATGGGTA | 160 | 0.0017591482 | 18.597656 | 5 |
CGCGCGC | 80 | 0.006830786 | 18.592413 | 44-45 |
TACAAAA | 290 | 2.1737196E-6 | 18.469398 | 2 |
CATGGGG | 1040 | 0.0 | 18.31154 | 4 |
ATGGGTG | 195 | 9.86717E-4 | 18.311539 | 5 |
TATTCTC | 195 | 9.86717E-4 | 18.311539 | 5 |
GTACAAA | 200 | 0.0011650431 | 17.863827 | 1 |
GACCTAC | 170 | 0.0096283555 | 17.513556 | 1 |
CTTAATC | 170 | 0.009659692 | 17.503675 | 3 |