FastQCFastQC Report
Sun 1 Jan 2017
ERR1142542_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1142542_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences285787
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6660.23304069114410383No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN6650.23269078019644No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA4050.14171393380384692No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGTAAG850.00716075528.0324841
GTATCAA19300.027.1610091
GAGTAAT1107.6846004E-427.0768341
CATGGGT7400.026.5505774
ACCGAGG900.00949597926.4565378
ATGGGGC3351.8189894E-1224.8814095
ATGGGTG3900.024.4257075
AACGCAG21400.023.3535216
TATCAAC22450.023.3377022
GGTATCA14550.023.3363231
ATCAACG21450.023.3154473
ATGGGTT1552.0918797E-423.0468355
AGCCGTA650.002060111822.866983110-111
CAACGCA21700.022.7724695
GTACATG30700.022.1200961
TACATGG30550.022.0221142
ACATGGG30750.021.4916423
TCAACGC23100.021.3923194
ACGCAGA23100.021.3810587
CGCAGAG23950.020.629478