Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142552_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 168368 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 313 | 0.18590230922740664 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 302 | 0.17936900123538915 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 232 | 0.1377934049225506 | No Hit |
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC | 210 | 0.12472678893851563 | No Hit |
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA | 176 | 0.10453292787227977 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACAAA | 105 | 3.1989657E-7 | 39.733612 | 1 |
TACAAAA | 130 | 4.1049134E-8 | 36.67718 | 2 |
GAACAAA | 85 | 1.6874676E-4 | 35.05907 | 1 |
CGTTAAC | 75 | 0.0038689855 | 31.78689 | 1 |
TCAAGAC | 75 | 0.0038689855 | 31.78689 | 3 |
TATTCTC | 75 | 0.0038746358 | 31.777422 | 7 |
ATTCAAG | 80 | 0.0053054052 | 29.800209 | 1 |
TGGTTCG | 40 | 0.005367293 | 29.73818 | 20-21 |
AGATACC | 85 | 0.007134138 | 28.047255 | 4 |
TAACAGT | 110 | 7.647807E-4 | 27.091097 | 4 |
TTAACAG | 90 | 0.009428411 | 26.489075 | 3 |
TAACGCC | 140 | 1.0386961E-4 | 25.543036 | 4 |
TAGGACT | 125 | 0.0016118399 | 23.840166 | 4 |
TGACCTC | 145 | 0.0038163753 | 20.551868 | 5 |
ATTCACC | 175 | 4.715681E-4 | 20.42834 | 6 |
TGGGGGG | 325 | 3.6379788E-12 | 20.166441 | 6 |
GTACTGT | 150 | 0.004651961 | 19.86089 | 6 |
GTATCAA | 1645 | 0.0 | 19.56488 | 1 |
ATGGGGG | 615 | 0.0 | 19.382248 | 5 |
CTAGTAC | 155 | 0.005613408 | 19.22594 | 3 |