Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142627_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 771595 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2683 | 0.347721278650069 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1372 | 0.17781349023775428 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2140 | 0.0 | 54.30294 | 1 |
GTATCAA | 3165 | 0.0 | 39.352753 | 1 |
ATCAACG | 3965 | 0.0 | 30.801498 | 3 |
TATCAAC | 4065 | 0.0 | 30.628002 | 2 |
CAACGCA | 4035 | 0.0 | 30.119505 | 5 |
TCAACGC | 4060 | 0.0 | 30.080774 | 4 |
AACGCAG | 4190 | 0.0 | 29.28776 | 6 |
ACGCAGA | 4655 | 0.0 | 26.235865 | 7 |
GTGGTAT | 1085 | 0.0 | 25.81491 | 1 |
CGCAGAG | 4760 | 0.0 | 25.657131 | 8 |
GCAGAGT | 5010 | 0.0 | 24.376835 | 9 |
CAGAGTA | 4995 | 0.0 | 23.911774 | 10-11 |
TGGTATC | 1190 | 0.0 | 23.527935 | 2 |
GAGTACA | 5310 | 0.0 | 21.594387 | 12-13 |
AGAGTAC | 4725 | 0.0 | 21.117666 | 10-11 |
GTACATG | 6345 | 0.0 | 20.475164 | 1 |
TACATGG | 6385 | 0.0 | 20.152353 | 2 |
ACATGGG | 6355 | 0.0 | 19.686338 | 3 |
CATGGGT | 1215 | 0.0 | 19.122713 | 4 |
ATGGGTA | 600 | 0.0 | 18.865292 | 5 |