FastQCFastQC Report
Sun 1 Jan 2017
ERR1142727_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1142727_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences287296
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN5690.19805357540654936No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5180.18030184896413454No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA7750.049.205241
GTATCAA11150.034.200952
ACGCAAG750.003875264731.7839438
GAGTTGA1055.8400165E-428.378529
GGGTAAA1306.300622E-527.5005251
CAACGCA13700.026.5349546
ATCAACG13700.026.5303124
TATCAAC15050.026.5259763
TAAAACG900.00945163226.4819874
AACGCAG13550.026.3888847
TATTTAG1859.1048605E-725.7662582
TCAACGC14400.025.2406445
CGCAGAG15950.022.7917799
ACGCAGA15700.022.7751188
ATCCTAG1602.5797356E-422.3441751
GTACATG21750.021.3682251
TACATGG22650.021.3083532
GTGGTAT3651.09139364E-1021.2218651
GGTAAAA1703.886267E-421.0298142
TTAAACA1450.00382878720.546374