Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142727_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 287296 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 569 | 0.19805357540654936 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 518 | 0.18030184896413454 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 775 | 0.0 | 49.20524 | 1 |
GTATCAA | 1115 | 0.0 | 34.20095 | 2 |
ACGCAAG | 75 | 0.0038752647 | 31.783943 | 8 |
GAGTTGA | 105 | 5.8400165E-4 | 28.37852 | 9 |
GGGTAAA | 130 | 6.300622E-5 | 27.500525 | 1 |
CAACGCA | 1370 | 0.0 | 26.534954 | 6 |
ATCAACG | 1370 | 0.0 | 26.530312 | 4 |
TATCAAC | 1505 | 0.0 | 26.525976 | 3 |
TAAAACG | 90 | 0.009451632 | 26.481987 | 4 |
AACGCAG | 1355 | 0.0 | 26.388884 | 7 |
TATTTAG | 185 | 9.1048605E-7 | 25.766258 | 2 |
TCAACGC | 1440 | 0.0 | 25.240644 | 5 |
CGCAGAG | 1595 | 0.0 | 22.791779 | 9 |
ACGCAGA | 1570 | 0.0 | 22.775118 | 8 |
ATCCTAG | 160 | 2.5797356E-4 | 22.344175 | 1 |
GTACATG | 2175 | 0.0 | 21.368225 | 1 |
TACATGG | 2265 | 0.0 | 21.308353 | 2 |
GTGGTAT | 365 | 1.09139364E-10 | 21.221865 | 1 |
GGTAAAA | 170 | 3.886267E-4 | 21.029814 | 2 |
TTAAACA | 145 | 0.003828787 | 20.54637 | 4 |