Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142834_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 277751 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 589 | 0.2120604426266692 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 385 | 0.13861336232812843 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 329 | 0.11845141871676429 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAGTACC | 70 | 0.0027768682 | 34.021175 | 4 |
ACGCAAG | 70 | 0.0027842424 | 34.00278 | 8 |
TATATAC | 85 | 0.007179236 | 28.017437 | 2 |
AGGGCTA | 155 | 6.774044E-6 | 26.887703 | 5 |
GTACTAG | 180 | 7.149538E-7 | 26.48957 | 1 |
AGTACTC | 140 | 1.04864754E-4 | 25.51588 | 5 |
CATGGGT | 290 | 1.4370016E-10 | 24.636023 | 4 |
CTAGTAC | 145 | 1.3308608E-4 | 24.636023 | 3 |
CATGGGG | 1105 | 0.0 | 23.168264 | 4 |
GTATTTA | 155 | 2.0765411E-4 | 23.07156 | 1 |
AATAGTG | 135 | 0.0025492345 | 22.03884 | 7 |
GACGCTA | 70 | 0.0031521334 | 21.25174 | 12-13 |
ATGGGGG | 725 | 0.0 | 20.530018 | 5 |
GTATCAA | 2260 | 0.0 | 20.042994 | 1 |
CTATTGA | 155 | 0.0056748455 | 19.195118 | 9 |
AACGCAG | 2410 | 0.0 | 19.011929 | 6 |
GTACTGT | 190 | 8.295425E-4 | 18.791012 | 6 |
ATCAACG | 2360 | 0.0 | 18.668398 | 3 |
CCTAGTA | 160 | 0.00679545 | 18.60533 | 2 |
ACGCAGA | 2490 | 0.0 | 18.401104 | 7 |