Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142733_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 176238 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 526 | 0.29846003699542667 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 383 | 0.2173197607780388 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 326 | 0.1849771331948842 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 318 | 0.1804378170428625 | No Hit |
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA | 248 | 0.14071880071267262 | No Hit |
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC | 233 | 0.13220758292763196 | No Hit |
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC | 213 | 0.1208592925475777 | No Hit |
ATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGGAGGT | 195 | 0.11064583120552887 | No Hit |
GTACATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA | 189 | 0.10724134409151262 | No Hit |
GTCTTAGCAGTAGTTTATAAGGAATATATCCCATTTTTAGTTATAATGAT | 188 | 0.1066739295725099 | No Hit |
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA | 187 | 0.1061065150535072 | No Hit |
GTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTAGGGCTGAA | 180 | 0.1021346134204882 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGTAGT | 90 | 2.3660273E-4 | 33.10006 | 1 |
TATTCTC | 110 | 2.011415E-5 | 32.49824 | 5 |
CCCCAGG | 75 | 0.0038759403 | 31.776056 | 1 |
AGTAGTA | 75 | 0.0038759403 | 31.776056 | 2 |
CTAACGC | 95 | 3.249349E-4 | 31.357952 | 3 |
CGCCTAC | 100 | 4.3814775E-4 | 29.798534 | 7 |
TAACGCC | 100 | 4.3887924E-4 | 29.790056 | 4 |
TCTAACG | 100 | 4.3887924E-4 | 29.790056 | 2 |
GGTATCA | 1305 | 0.0 | 27.393152 | 1 |
ACGCCTA | 110 | 7.6644955E-4 | 27.08187 | 6 |
AGTAGTG | 90 | 0.009445276 | 26.48005 | 5 |
TAGTAGT | 90 | 0.009445276 | 26.48005 | 4 |
GCATACA | 90 | 0.009445276 | 26.48005 | 4 |
GTCATAC | 45 | 0.009523699 | 26.442425 | 52-53 |
ACTGCAA | 45 | 0.009550119 | 26.427404 | 106-107 |
CCTATTT | 170 | 1.37559855E-5 | 24.532988 | 3 |
CTATTGA | 205 | 2.21343E-6 | 23.257393 | 9 |
AGGGCTA | 205 | 2.2189197E-6 | 23.250776 | 5 |
CATGGGC | 260 | 2.9654984E-8 | 22.915426 | 4 |
GTATCAA | 1590 | 0.0 | 22.483059 | 1 |