FastQCFastQC Report
Sun 1 Jan 2017
ERR1142552_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1142552_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences168368
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA3130.18590230922740664No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3020.17936900123538915No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT2320.1377934049225506No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC2100.12472678893851563No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA1760.10453292787227977No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACAAA1053.1989657E-739.7336121
TACAAAA1304.1049134E-836.677182
GAACAAA851.6874676E-435.059071
CGTTAAC750.003868985531.786891
TCAAGAC750.003868985531.786893
TATTCTC750.003874635831.7774227
ATTCAAG800.005305405229.8002091
TGGTTCG400.00536729329.7381820-21
AGATACC850.00713413828.0472554
TAACAGT1107.647807E-427.0910974
TTAACAG900.00942841126.4890753
TAACGCC1401.0386961E-425.5430364
TAGGACT1250.001611839923.8401664
TGACCTC1450.003816375320.5518685
ATTCACC1754.715681E-420.428346
TGGGGGG3253.6379788E-1220.1664416
GTACTGT1500.00465196119.860896
GTATCAA16450.019.564881
ATGGGGG6150.019.3822485
CTAGTAC1550.00561340819.225943