Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142712_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 580040 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1459 | 0.2515343769395214 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1116 | 0.19240052410178607 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2060 | 0.0 | 28.62671 | 1 |
GTATCAA | 2795 | 0.0 | 28.131672 | 1 |
ATCAACG | 3290 | 0.0 | 23.899096 | 3 |
AACGCAG | 3345 | 0.0 | 23.32806 | 6 |
CAACGCA | 3385 | 0.0 | 23.052395 | 5 |
TCAACGC | 3365 | 0.0 | 23.012392 | 4 |
TATCAAC | 3505 | 0.0 | 22.942945 | 2 |
CTATAGT | 135 | 0.0025372026 | 22.061735 | 4 |
CATGGGT | 930 | 0.0 | 21.77707 | 4 |
ACGCAGA | 3615 | 0.0 | 21.420938 | 7 |
GTACAAA | 480 | 0.0 | 21.096535 | 1 |
CATGGGG | 2370 | 0.0 | 20.860907 | 4 |
CGCAGAG | 3730 | 0.0 | 20.760508 | 8 |
GTACATG | 4745 | 0.0 | 20.462318 | 1 |
ATAGGCA | 175 | 4.743485E-4 | 20.422865 | 4 |
TACATGG | 4820 | 0.0 | 20.14392 | 2 |
ACATGGG | 4795 | 0.0 | 20.000492 | 3 |
GCAGAGT | 3910 | 0.0 | 19.957125 | 9 |
ATGGGGG | 1390 | 0.0 | 19.712717 | 5 |
TGGGGGG | 915 | 0.0 | 19.530062 | 6 |