Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142450_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 321229 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1987 | 0.6185618359488091 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1915 | 0.5961479193970657 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 1082 | 0.3368313570692559 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 778 | 0.24219482051745017 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 740 | 0.23036525344847444 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 593 | 0.18460350715533155 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 559 | 0.17401915767256382 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG | 493 | 0.15347306750013232 | No Hit |
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 446 | 0.13884176086218863 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 369 | 0.11487132232768522 | No Hit |
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC | 368 | 0.11456001793113324 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCAACG | 130 | 0.0 | 64.08338 | 1 |
GCGCAGA | 170 | 0.0 | 45.50458 | 1 |
GTACTAG | 115 | 6.632381E-7 | 36.22104 | 1 |
GTACAAC | 70 | 0.0027846317 | 34.003426 | 1 |
GTTGTAT | 110 | 2.033818E-5 | 32.457813 | 1 |
ACCTTAC | 75 | 0.003916325 | 31.71677 | 7 |
CTTACTC | 75 | 0.003916325 | 31.71677 | 9 |
CGTACTT | 95 | 3.2911473E-4 | 31.299444 | 2 |
GTGTTAT | 165 | 3.3918514E-7 | 28.851393 | 1 |
GTCCTAA | 85 | 0.0071992087 | 28.002821 | 1 |
CGCATAC | 85 | 0.0072211376 | 27.985386 | 3 |
GGTATCA | 2860 | 0.0 | 26.632053 | 1 |
CTTAAAC | 90 | 0.009543194 | 26.430641 | 3 |
ATAATGC | 125 | 0.0016359381 | 23.787579 | 8 |
CATGGGG | 1270 | 0.0 | 23.412971 | 4 |
GCGTACT | 130 | 0.0020477592 | 22.886923 | 1 |
GTATCAA | 3545 | 0.0 | 22.828817 | 1 |
ATGGGGG | 810 | 0.0 | 22.75972 | 5 |
GGGTACC | 185 | 2.6935375E-5 | 22.501762 | 7 |
CTACAGG | 160 | 2.603808E-4 | 22.314749 | 1 |