FastQCFastQC Report
Sun 1 Jan 2017
ERR1142471_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1142471_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences853204
Sequences flagged as poor quality0
Sequence length125
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN18790.2202286909109662No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA14580.1708852747994618No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA31400.033.003911
GGTATCA22600.030.5699941
CAACGCA37150.026.4434265
ATCAACG37150.026.4434263
AACGCAG37600.026.4343136
TCAACGC37800.025.9887124
TATCAAC38750.025.5052152
ACGCAGA41800.022.9333617
CGCAGAG43450.022.1995078
CATGGGG29200.021.2052354
GCAGAGT47950.020.2474529
GTACATG56350.019.8705441
TACATGG57650.019.2090642
ACATGGG56950.018.817913
TATTACT3604.663343E-818.1920972
AGAGTAC42700.018.0639710-11
GAGTAAA3655.4384145E-817.9492231
ATGGGGG14950.017.921075
CAGAGTA45750.017.44556610-11
GAGTACA47800.016.51046612-13