Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142643_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 290533 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2519 | 0.8670271535419385 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2434 | 0.8377705802783161 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1059 | 0.3645024833667776 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 769 | 0.2646859392908895 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 551 | 0.18965143374418741 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 366 | 0.12597536252336225 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 313 | 0.10773302860604475 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCAACG | 145 | 0.0 | 73.88624 | 1 |
GCGCAGA | 205 | 0.0 | 69.68133 | 1 |
GCGTACA | 35 | 9.12613E-5 | 68.02225 | 1 |
CGTACAT | 40 | 1.7744445E-4 | 59.46825 | 2 |
AACGCGT | 30 | 0.0042423285 | 59.468246 | 6 |
GGTATCA | 1735 | 0.0 | 55.91742 | 1 |
ACGCGTG | 35 | 0.0078068823 | 50.972782 | 7 |
GTATCAA | 2810 | 0.0 | 45.116177 | 1 |
ATCAACG | 3375 | 0.0 | 37.35487 | 3 |
TATCAAC | 3470 | 0.0 | 36.332184 | 2 |
CAACGCA | 3570 | 0.0 | 36.14736 | 5 |
TCAACGC | 3605 | 0.0 | 35.63146 | 4 |
AACGCAG | 3670 | 0.0 | 35.162426 | 6 |
CGTACTT | 85 | 1.712711E-4 | 34.98132 | 2 |
ACGCAGA | 4050 | 0.0 | 31.863234 | 7 |
GAATAGT | 75 | 0.003899464 | 31.743715 | 1 |
CGCAGAG | 4245 | 0.0 | 30.39955 | 8 |
GCGTACT | 100 | 4.422075E-4 | 29.759733 | 1 |
GCAGAGT | 4490 | 0.0 | 29.00567 | 9 |
TGGTATC | 920 | 0.0 | 28.441334 | 2 |