Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142928_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 517970 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1832 | 0.3536884375542985 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1775 | 0.0 | 32.867607 | 1 |
GTATCAA | 2220 | 0.0 | 25.998552 | 2 |
GTAAGTA | 245 | 1.6159902E-8 | 24.286465 | 2 |
TATAGTG | 130 | 0.0020514277 | 22.88311 | 5 |
AACGCAG | 2565 | 0.0 | 22.49297 | 7 |
CAACGCA | 2525 | 0.0 | 22.378174 | 6 |
TCAACGC | 2590 | 0.0 | 22.282318 | 5 |
TATCAAC | 2625 | 0.0 | 22.214018 | 3 |
ATCAACG | 2635 | 0.0 | 21.903902 | 4 |
GTATACG | 165 | 3.2008192E-4 | 21.647497 | 1 |
ATGGGGG | 1170 | 0.0 | 21.357569 | 5 |
CCTATGC | 145 | 0.0038725173 | 20.509943 | 8 |
ACGCAGA | 2805 | 0.0 | 20.356392 | 8 |
CATGGGG | 1915 | 0.0 | 20.196445 | 4 |
CGCAGAG | 2905 | 0.0 | 19.860403 | 9 |
TGGGGGG | 720 | 0.0 | 19.826279 | 6 |
ATACCGT | 305 | 1.6469494E-7 | 19.501257 | 6 |
TACCGTC | 215 | 8.5739186E-5 | 19.365202 | 7 |
ATATACG | 185 | 6.964892E-4 | 19.290434 | 6 |
GTCTACA | 345 | 2.8612703E-8 | 18.980778 | 1 |