Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142835_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 645808 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2963 | 0.45880509377400097 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1645 | 0.0 | 46.370144 | 1 |
GTATCAA | 2540 | 0.0 | 40.35423 | 1 |
ATCAACG | 3220 | 0.0 | 30.508303 | 3 |
CAACGCA | 3280 | 0.0 | 30.31326 | 5 |
TCAACGC | 3285 | 0.0 | 30.26712 | 4 |
TATCAAC | 3345 | 0.0 | 30.258179 | 2 |
AACGCAG | 3330 | 0.0 | 29.830345 | 6 |
ACGCAGA | 3770 | 0.0 | 26.506596 | 7 |
CGCAGAG | 3860 | 0.0 | 26.198795 | 8 |
GTACATG | 5465 | 0.0 | 26.061659 | 1 |
TACATGG | 5625 | 0.0 | 25.0851 | 2 |
CATGGGT | 985 | 0.0 | 24.782072 | 4 |
GCAGAGT | 4080 | 0.0 | 24.640312 | 9 |
ACATGGG | 5590 | 0.0 | 24.603117 | 3 |
CATGGGG | 3165 | 0.0 | 24.078323 | 4 |
AGAGTAC | 3915 | 0.0 | 21.576263 | 10-11 |
CAGAGTA | 4045 | 0.0 | 21.324024 | 10-11 |
ATGGGGG | 2065 | 0.0 | 20.758808 | 5 |
ATGGGGC | 700 | 0.0 | 20.412828 | 5 |
AGTACAC | 630 | 0.0 | 19.845804 | 3 |