FastQCFastQC Report
Sun 1 Jan 2017
ERR1142457_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1142457_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences354864
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN7800.21980251589341268No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6150.17330582983903692No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA4950.1394900581631273No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT3890.10961945984940709No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGTAAG300.00421124659.5814821
TCTAACG850.007175551328.0224882
GGTATCA17900.027.6271671
CTAACGC900.0094830326.4656853
TATTCTC2151.2175042E-724.926985
GTATCAA22950.023.3652881
CATGGGG14300.023.3194124
TCTACAC1552.0908604E-423.0507563
TGGGGGG4750.022.5590976
GTACATG34500.020.8966941
ATCAACG25050.020.443553
GTACAAA3501.4988473E-920.4279371
ATGGGGG8750.020.4163845
TATCAAC25500.020.3163032
ACATGGG33000.020.2101573
CAACGCA25100.020.1655855
CATGGGT4151.8189894E-1220.088414
AACGAAT905.774125E-419.83664330-31
TACATGG35350.019.7088872
TCAACGC26000.019.6965774