Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142473_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 974031 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2321 | 0.2382881037667179 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 2168 | 0.22258018481957964 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2420 | 0.0 | 34.700912 | 1 |
GTATCAA | 3415 | 0.0 | 28.601595 | 1 |
CATGGGG | 3275 | 0.0 | 25.089554 | 4 |
GTACATG | 6710 | 0.0 | 24.497608 | 1 |
CATGGGT | 1550 | 0.0 | 24.201038 | 4 |
TACATGG | 6880 | 0.0 | 23.886131 | 2 |
CAACGCA | 4050 | 0.0 | 23.816896 | 5 |
TCAACGC | 4045 | 0.0 | 23.699137 | 4 |
ATCAACG | 4055 | 0.0 | 23.640692 | 3 |
ACATGGG | 6715 | 0.0 | 23.497683 | 3 |
AACGCAG | 4190 | 0.0 | 23.434135 | 6 |
TATCAAC | 4275 | 0.0 | 22.841934 | 2 |
ATGGGGG | 1590 | 0.0 | 21.345331 | 5 |
AACGCAC | 140 | 0.003147052 | 21.259605 | 7 |
ACGCAGA | 4665 | 0.0 | 21.05453 | 7 |
CGCAGAG | 4820 | 0.0 | 20.259184 | 8 |
ATGGGTG | 855 | 0.0 | 20.195614 | 5 |
GCAGAGT | 5210 | 0.0 | 18.635103 | 9 |
AGAGTAC | 4910 | 0.0 | 17.468792 | 10-11 |
CAGAGTA | 5175 | 0.0 | 17.2073 | 10-11 |