Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142507_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 520336 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1861 | 0.35765351618953906 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1148 | 0.22062667199655608 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1860 | 0.0 | 38.779232 | 1 |
ATTAGAC | 100 | 1.0517588E-5 | 35.7459 | 3 |
GTATCAA | 2610 | 0.0 | 32.203667 | 1 |
ATGGGTG | 660 | 0.0 | 29.788252 | 5 |
CATGGGT | 1450 | 0.0 | 27.11758 | 4 |
TACACGG | 90 | 0.009464752 | 26.478445 | 2 |
ATCAACG | 3180 | 0.0 | 25.666605 | 3 |
AACGCAG | 3240 | 0.0 | 25.549181 | 6 |
CAACGCA | 3295 | 0.0 | 25.132421 | 5 |
GTATTAG | 190 | 1.1473476E-6 | 25.099388 | 1 |
TCAACGC | 3255 | 0.0 | 25.075207 | 4 |
TATCAAC | 3365 | 0.0 | 24.786655 | 2 |
GTACATG | 5220 | 0.0 | 23.067877 | 1 |
TACATGG | 5310 | 0.0 | 22.551556 | 2 |
ACATGGG | 5160 | 0.0 | 22.398918 | 3 |
ACGCAGA | 3815 | 0.0 | 21.39031 | 7 |
CGCAGAG | 3880 | 0.0 | 20.880466 | 8 |
CATGGGG | 2375 | 0.0 | 20.318722 | 4 |
GCAGAGT | 4090 | 0.0 | 19.67792 | 9 |
ATGGGGG | 1215 | 0.0 | 19.123322 | 5 |