Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142734_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 378969 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1101 | 0.2905250825265391 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 716 | 0.18893365948138238 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1445 | 0.0 | 47.001286 | 1 |
GTATCAA | 1980 | 0.0 | 34.292355 | 2 |
GTCTAGG | 120 | 3.6574304E-5 | 29.788095 | 1 |
TACCGAC | 80 | 0.0053277346 | 29.78415 | 7 |
TATCAAC | 2435 | 0.0 | 27.639942 | 3 |
ATCAACG | 2450 | 0.0 | 26.498302 | 4 |
CAACGCA | 2495 | 0.0 | 26.266054 | 6 |
TCTAGGA | 205 | 7.664676E-8 | 26.14847 | 2 |
AACGCAG | 2545 | 0.0 | 25.98067 | 7 |
TCAACGC | 2620 | 0.0 | 24.785513 | 5 |
GTACAAA | 265 | 1.3515091E-9 | 24.72974 | 1 |
ACGCAGA | 2705 | 0.0 | 24.00349 | 8 |
CGCAGAG | 2825 | 0.0 | 22.986921 | 9 |
CTAACGC | 130 | 0.0020375676 | 22.907848 | 3 |
ACGCCTA | 165 | 3.1821043E-4 | 21.664068 | 6 |
TTACACC | 165 | 3.1878104E-4 | 21.65833 | 4 |
TCTAACG | 140 | 0.0031332902 | 21.271574 | 2 |
CAGAGTA | 2965 | 0.0 | 21.097807 | 10-11 |
GTACATG | 3455 | 0.0 | 20.17486 | 1 |
GCAGAGT | 2930 | 0.0 | 20.129839 | 9 |