Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142471_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 853204 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1879 | 0.2202286909109662 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1458 | 0.1708852747994618 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 3140 | 0.0 | 33.00391 | 1 |
GGTATCA | 2260 | 0.0 | 30.569994 | 1 |
CAACGCA | 3715 | 0.0 | 26.443426 | 5 |
ATCAACG | 3715 | 0.0 | 26.443426 | 3 |
AACGCAG | 3760 | 0.0 | 26.434313 | 6 |
TCAACGC | 3780 | 0.0 | 25.988712 | 4 |
TATCAAC | 3875 | 0.0 | 25.505215 | 2 |
ACGCAGA | 4180 | 0.0 | 22.933361 | 7 |
CGCAGAG | 4345 | 0.0 | 22.199507 | 8 |
CATGGGG | 2920 | 0.0 | 21.205235 | 4 |
GCAGAGT | 4795 | 0.0 | 20.247452 | 9 |
GTACATG | 5635 | 0.0 | 19.870544 | 1 |
TACATGG | 5765 | 0.0 | 19.209064 | 2 |
ACATGGG | 5695 | 0.0 | 18.81791 | 3 |
TATTACT | 360 | 4.663343E-8 | 18.192097 | 2 |
AGAGTAC | 4270 | 0.0 | 18.06397 | 10-11 |
GAGTAAA | 365 | 5.4384145E-8 | 17.949223 | 1 |
ATGGGGG | 1495 | 0.0 | 17.92107 | 5 |
CAGAGTA | 4575 | 0.0 | 17.445566 | 10-11 |
GAGTACA | 4780 | 0.0 | 16.510466 | 12-13 |