FastQCFastQC Report
Sun 1 Jan 2017
ERR1142662_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1142662_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences581404
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA15790.2715839588306926No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN10740.18472525128826084No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA16500.046.576191
GTATCAA24450.039.4724771
TATCAAC30950.030.610452
ATCAACG30050.030.5358123
TCAACGC30250.030.5308974
CAACGCA30350.030.4303025
AACGCAG30650.030.132456
TCTAGAC1802.1644155E-829.7922483
TTCGCGA400.00537028629.74085854-55
ACGCAGA35300.026.500757
CGCAGAG36250.025.806258
GTACATG50500.024.0656191
GCAGAGT39050.023.6506969
CATGGGG25300.023.5511824
ACATGGG50650.023.0573753
TACATGG51600.022.9792922
CAGAGTA39450.021.2208410-11
ATGGGGG12100.020.1897875
AGAGTAC37250.019.99479510-11
CATGGGT14400.019.8614984