Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142522_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 516166 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1230 | 0.23829543208967657 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1154 | 0.22357148669226568 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 704 | 0.13639023104970108 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 522 | 0.10113025654537493 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATTAGAC | 90 | 0.00950832 | 26.453476 | 3 |
CATGGGT | 820 | 0.0 | 25.405016 | 4 |
GTTAAGC | 165 | 1.1053469E-5 | 25.251045 | 3 |
GGTATCA | 3175 | 0.0 | 24.197174 | 1 |
TTAGACT | 155 | 2.0992057E-4 | 23.040125 | 4 |
ATGGGTG | 575 | 0.0 | 22.772993 | 5 |
CATGGGG | 2280 | 0.0 | 22.45065 | 4 |
CCGTCGA | 165 | 3.18772E-4 | 21.6606 | 9 |
ATACTAG | 170 | 3.930814E-4 | 20.999004 | 6 |
ACATGGG | 5455 | 0.0 | 20.949408 | 3 |
GTACATG | 5745 | 0.0 | 20.836498 | 1 |
TACATGG | 5745 | 0.0 | 20.407942 | 2 |
ATGGGGG | 1290 | 0.0 | 20.301506 | 5 |
GTATCAA | 3845 | 0.0 | 20.29054 | 1 |
ATGGGGC | 570 | 0.0 | 19.840107 | 5 |
TAGCCCG | 215 | 8.528E-5 | 19.37871 | 5 |
GTGCTAG | 320 | 2.6926136E-7 | 18.610958 | 1 |
TATCAAC | 4235 | 0.0 | 18.549984 | 2 |
AACGCAG | 4210 | 0.0 | 18.230726 | 6 |
ATCAACG | 4170 | 0.0 | 18.127293 | 3 |