Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142451_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 310103 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 685 | 0.22089434800695254 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 434 | 0.13995349932119328 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 389 | 0.12544219178788982 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 349 | 0.11254325175828676 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACATA | 105 | 1.09139364E-10 | 51.10761 | 1 |
CTAACGC | 80 | 0.00531812 | 29.793455 | 3 |
ATGGGGG | 890 | 0.0 | 24.102571 | 5 |
CATGGGG | 1305 | 0.0 | 23.286839 | 4 |
GGTATCA | 1960 | 0.0 | 22.511686 | 1 |
TATTCTC | 135 | 0.002529559 | 22.069225 | 5 |
TGGGGGG | 495 | 0.0 | 21.66095 | 6 |
AACGCCT | 150 | 0.004658739 | 19.862303 | 5 |
TAGTGTA | 155 | 0.0056154495 | 19.23093 | 9 |
TACATAA | 155 | 0.005631251 | 19.221584 | 2 |
GTATCAA | 2290 | 0.0 | 18.734749 | 2 |
GTACTTG | 160 | 0.006739127 | 18.632982 | 1 |
AAAGCAG | 355 | 3.9119186E-8 | 18.463549 | 5 |
ACATGGG | 2920 | 0.0 | 17.957699 | 3 |
GTACATG | 3140 | 0.0 | 17.469906 | 1 |
CATGGGC | 445 | 1.551598E-9 | 17.407413 | 4 |
TACATGG | 3160 | 0.0 | 17.159521 | 2 |
ATACCCA | 210 | 0.0016124607 | 17.019318 | 6 |
TAACCTT | 105 | 0.0016201914 | 17.011053 | 24-25 |
TCCCTTA | 105 | 0.001627227 | 17.000048 | 34-35 |