Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142461_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 435034 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1256 | 0.288713066105178 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1011 | 0.23239562884740045 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 977 | 0.22458014775856597 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 719 | 0.16527443831976352 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG | 520 | 0.11953088724099725 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 497 | 0.11424394415149161 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACAAA | 390 | 0.0 | 27.50037 | 1 |
GTACAAC | 135 | 0.0025318784 | 22.068197 | 1 |
CATGGGG | 1750 | 0.0 | 21.1025 | 4 |
GTATACG | 175 | 4.731498E-4 | 20.428844 | 1 |
CATGGGT | 470 | 0.0 | 20.27694 | 4 |
GTAAAAA | 425 | 4.0017767E-11 | 19.627714 | 1 |
ATGGGGG | 1135 | 0.0 | 19.41718 | 5 |
GCTTAAA | 190 | 8.2317105E-4 | 18.81604 | 1 |
GTACATA | 260 | 1.7434002E-5 | 18.333578 | 1 |
CTTATAG | 195 | 9.824153E-4 | 18.327234 | 3 |
GTATAAA | 545 | 3.6379788E-12 | 17.49259 | 1 |
GTATCAA | 4335 | 0.0 | 16.768776 | 1 |
TATACAG | 250 | 2.6895286E-4 | 16.677784 | 5 |
TGGGGGG | 715 | 0.0 | 16.647676 | 6 |
GTACTGG | 255 | 3.1196754E-4 | 16.356428 | 1 |
GTCCTAG | 220 | 0.002198614 | 16.25022 | 1 |
ATGGGGC | 445 | 0.0 | 16.062069 | 5 |
GTGTAAG | 260 | 3.6170456E-4 | 16.041882 | 1 |
ACGTTTA | 135 | 4.8522782E-4 | 15.437049 | 26-27 |
GTACATG | 5675 | 0.0 | 15.434127 | 1 |