Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142557_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 298969 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 499 | 0.16690693683960545 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 432 | 0.14449658660262435 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 332 | 0.11104830266683169 | No Hit |
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA | 305 | 0.10201726600416766 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACATA | 105 | 1.4684612E-5 | 34.038918 | 1 |
GGTATCA | 1550 | 0.0 | 33.81931 | 1 |
CGTTAAC | 75 | 0.0038840598 | 31.769657 | 9 |
GTATTAG | 120 | 3.6582504E-5 | 29.784054 | 1 |
ACGTTAA | 80 | 0.005326032 | 29.784054 | 8 |
AGGGAGT | 120 | 3.6582504E-5 | 29.784054 | 6 |
TCTAACG | 90 | 0.009464912 | 26.474712 | 2 |
GTATCAA | 2010 | 0.0 | 25.78321 | 2 |
TATTCTC | 200 | 1.8002811E-6 | 23.82724 | 3 |
TATCAAC | 2330 | 0.0 | 21.986511 | 3 |
GGGCTAT | 275 | 5.4147677E-8 | 21.661129 | 6 |
ATCAACG | 2255 | 0.0 | 21.661129 | 4 |
AACGCAG | 2245 | 0.0 | 21.49228 | 7 |
TAAAACG | 140 | 0.0031294073 | 21.274323 | 3 |
CAACGCA | 2305 | 0.0 | 21.191256 | 6 |
GGTCTAA | 85 | 3.9224923E-4 | 21.006397 | 56-57 |
TCAACGC | 2365 | 0.0 | 20.905508 | 5 |
ATTCAAG | 145 | 0.0038352504 | 20.540728 | 1 |
ACGCAGA | 2355 | 0.0 | 20.488392 | 8 |
CGCAGAG | 2405 | 0.0 | 20.310123 | 9 |