Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142641_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 414950 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 938 | 0.22605133148572115 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 796 | 0.19183034100494037 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 439 | 0.10579587902156885 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATAAT | 95 | 3.2691192E-4 | 31.337955 | 1 |
TATCGGC | 80 | 0.005342939 | 29.76746 | 2 |
TTATGTA | 125 | 4.855702E-5 | 28.576763 | 2 |
TAACGCA | 85 | 0.0071845143 | 28.016434 | 4 |
TAGTAAC | 85 | 0.0071845143 | 28.016434 | 4 |
GTATCAA | 2365 | 0.0 | 25.428135 | 1 |
ATGGGTA | 290 | 1.4370016E-10 | 24.638115 | 5 |
TAGGGGA | 125 | 0.0016262035 | 23.813969 | 4 |
CATGGGT | 735 | 0.0 | 23.48997 | 4 |
CAACGCA | 2785 | 0.0 | 21.379576 | 5 |
TATCAAC | 2885 | 0.0 | 21.255102 | 2 |
GGTATCA | 1855 | 0.0 | 21.184795 | 1 |
ATCAACG | 2800 | 0.0 | 21.049847 | 3 |
TCAACGC | 2825 | 0.0 | 20.652822 | 4 |
AACGCAG | 2790 | 0.0 | 20.492563 | 6 |
GAGTAAA | 180 | 5.747587E-4 | 19.847372 | 1 |
TATGTAC | 150 | 0.0046849735 | 19.844973 | 3 |
TGGGGGG | 585 | 0.0 | 19.34314 | 6 |
GTACATA | 155 | 0.0056589637 | 19.207134 | 1 |
CATGGGG | 1620 | 0.0 | 18.742476 | 4 |