Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142532_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 487432 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1310 | 0.26875543665577967 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1010 | 0.20720839009338737 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1940 | 0.0 | 31.320898 | 1 |
GTACTAA | 135 | 8.16991E-5 | 26.476053 | 1 |
GTATCAA | 2590 | 0.0 | 25.53048 | 1 |
CATGGGG | 1805 | 0.0 | 25.079996 | 4 |
ACCGTGT | 120 | 0.0012786322 | 24.818745 | 8 |
GTACATG | 4375 | 0.0 | 24.100775 | 1 |
ACATGGG | 4370 | 0.0 | 23.444344 | 3 |
TACATGG | 4505 | 0.0 | 23.270674 | 2 |
GCGACCG | 130 | 0.0020314038 | 22.921408 | 9 |
TATCAAC | 3085 | 0.0 | 21.045652 | 2 |
AACGCAG | 2960 | 0.0 | 20.722742 | 7 |
ATCAACG | 2960 | 0.0 | 20.525774 | 3 |
GTCTTAT | 175 | 4.7396112E-4 | 20.424385 | 1 |
ATGGGGG | 1000 | 0.0 | 20.252096 | 5 |
CAACGCA | 3030 | 0.0 | 20.05158 | 5 |
TCAACGC | 3010 | 0.0 | 19.986925 | 4 |
GTACACT | 330 | 1.7058483E-8 | 19.854998 | 4 |
ACGCAGA | 3235 | 0.0 | 18.777058 | 7 |
CGCAGAG | 3270 | 0.0 | 18.579905 | 8 |
CATGGGA | 2130 | 0.0 | 18.456757 | 4 |