FastQCFastQC Report
Sun 1 Jan 2017
ERR1142927_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1142927_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91021
Sequences flagged as poor quality0
Sequence length125
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA4030.442754968633612No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT3020.3317915645839971No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG2170.23840652157194495No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT1930.21203898001560081No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1780.1955592665428857No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG1640.1801782006350183No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA1600.1757836103756276No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG1460.16040254446776017No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA1430.15710660177321717No Hit
GTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTAGGGCTGAA1350.14831742125443578No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC1300.14282418343019743No Hit
GTCTTAGCAGTAGTTTATAAGGAATATATCCCATTTTTAGTTATAATGAT1240.1362322980411114No Hit
ATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGGAGGT1190.13073906021687304No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC1180.12964041265202536No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC1140.12524582239263465No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC1130.12414717482778699No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC1130.12414717482778699No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC1110.12194987969809165No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC1100.12085123213324397No Hit
GTACATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA1090.1197525845683963No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT1050.11535799430900562No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA1040.11425934674415796No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT930.10217422353083355No Hit
GAATATATCCCATTTTTAGTTATAATGATGCCTTATGTGATAGATGCCTC920.10107557596598588No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCAGAG350.00775165751.035913
TACTGAT801.18387245E-437.2136842
TAGGCAT1355.7496436E-835.2646455
CTGATTG851.6911043E-435.0246474
TACTGTG700.002780967433.986477
ACTGATT902.3659437E-433.078833
GTAAAAA953.2178272E-431.3897531
GTACTAG1203.6005167E-529.8202671
CTAGGCA1903.614332E-828.2040564
TGGGGGA1903.6532583E-828.1729956
CACAAAT850.00715133628.0197182
CCTATTT850.0071899527.9888579
CTATTGA1505.240481E-627.7556179
AGTCCTA557.7190757E-427.04958728-29
ATTTAGG1556.6183748E-626.9344331
TTTAGGG1556.7042074E-626.8898892
AGGGCTA1556.733031E-626.8750745
GAGCAAG450.00950116126.44848444-45
GGGCTAT1608.6528125E-626.020896
GCTATTG1608.6528125E-626.020898