Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142617_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 887094 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2152 | 0.24258984955371132 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1541 | 0.17371327052150054 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2060 | 0.0 | 44.25415 | 1 |
GTATCAA | 3135 | 0.0 | 38.582314 | 1 |
CAACGCA | 3880 | 0.0 | 30.546017 | 5 |
TATCAAC | 3950 | 0.0 | 30.460474 | 2 |
ATCAACG | 3930 | 0.0 | 29.857677 | 3 |
TCAACGC | 4035 | 0.0 | 29.22833 | 4 |
AACGCAG | 4090 | 0.0 | 28.678293 | 6 |
ACGCAGA | 4705 | 0.0 | 24.803148 | 7 |
CGCAGAG | 4815 | 0.0 | 24.483826 | 8 |
GCAGAGT | 5270 | 0.0 | 22.034748 | 9 |
GTACTAC | 250 | 5.204256E-7 | 21.450249 | 1 |
GTACATG | 6505 | 0.0 | 20.517788 | 1 |
AGAGTAC | 4880 | 0.0 | 20.439915 | 10-11 |
TACATGG | 6670 | 0.0 | 19.914133 | 2 |
CAGAGTA | 5175 | 0.0 | 19.907642 | 10-11 |
ACATGGG | 6655 | 0.0 | 19.60101 | 3 |
CATGGGG | 3930 | 0.0 | 19.399912 | 4 |
GCGAATA | 80 | 0.006854282 | 18.584244 | 112-113 |
GAGTACA | 5500 | 0.0 | 18.081642 | 12-13 |
AGTACAT | 5465 | 0.0 | 17.925028 | 12-13 |