Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142700_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 133431 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 435 | 0.3260111967983452 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 351 | 0.26305731052004405 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 259 | 0.19410781602476188 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 237 | 0.17761989342806395 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 233 | 0.1746220893195734 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG | 215 | 0.16113197083136602 | No Hit |
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA | 191 | 0.14314514618042284 | No Hit |
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 177 | 0.132652831800706 | No Hit |
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG | 170 | 0.12740667461084754 | No Hit |
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC | 170 | 0.12740667461084754 | No Hit |
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC | 168 | 0.12590777255660227 | No Hit |
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC | 153 | 0.1146660071497628 | No Hit |
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA | 152 | 0.11391655612264016 | No Hit |
GTCTTAGCAGTAGTTTATAAGGAATATATCCCATTTTTAGTTATAATGAT | 151 | 0.11316710509551753 | No Hit |
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC | 146 | 0.10941984995990438 | No Hit |
ATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGGAGGT | 136 | 0.10192533968867805 | No Hit |
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT | 135 | 0.10117588866155541 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTAACG | 35 | 0.007767495 | 51.022724 | 2 |
CTCTAAT | 35 | 0.007767495 | 51.022724 | 1 |
GTACACT | 60 | 0.0013014913 | 39.684345 | 4 |
TATTCTC | 90 | 5.105483E-6 | 39.684345 | 3 |
CATACAC | 60 | 0.0013014913 | 39.684345 | 3 |
ATGGGAC | 65 | 0.0019285239 | 36.631702 | 7 |
TACACTG | 90 | 2.3754616E-4 | 33.070286 | 5 |
GTACAAA | 110 | 2.0201478E-5 | 32.46901 | 1 |
TCCGCTT | 100 | 4.4062705E-4 | 29.763256 | 9 |
TAAGTAC | 85 | 0.0071721985 | 28.012478 | 1 |
ATACTGA | 85 | 0.0071721985 | 28.012478 | 6 |
TCTAATT | 110 | 7.694975E-4 | 27.057508 | 2 |
CGATTCA | 45 | 0.009530281 | 26.436344 | 56-57 |
GAGTACT | 125 | 6.91216E-10 | 26.191666 | 12-13 |
TTCTCTG | 115 | 9.975372E-4 | 25.881092 | 5 |
ATGGGGG | 515 | 0.0 | 25.428802 | 5 |
CATGGGG | 685 | 0.0 | 25.201004 | 4 |
TGGGGGG | 310 | 3.274181E-10 | 23.042522 | 6 |
TCTCTGC | 140 | 0.003133077 | 21.259468 | 6 |
GATACTG | 70 | 0.0031480968 | 21.251476 | 90-91 |