Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142567_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 374113 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1619 | 0.4327569477671185 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 626 | 0.16732912248438306 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 2270 | 0.0 | 33.593082 | 1 |
GGTATCA | 1640 | 0.0 | 33.05699 | 1 |
TATCAAC | 2620 | 0.0 | 28.19213 | 2 |
AACGCAG | 2710 | 0.0 | 27.684336 | 6 |
ATCAACG | 2615 | 0.0 | 27.562664 | 3 |
CAACGCA | 2675 | 0.0 | 27.163473 | 5 |
TCAACGC | 2785 | 0.0 | 25.880203 | 4 |
ACGCAGA | 3000 | 0.0 | 24.614527 | 7 |
CGCAGAG | 3060 | 0.0 | 24.13189 | 8 |
GCAGAGT | 3215 | 0.0 | 23.156788 | 9 |
CCTTAGT | 140 | 0.0031287 | 21.276869 | 1 |
CAGAGTA | 3130 | 0.0 | 20.645943 | 10-11 |
GTTTAAT | 145 | 0.0038343824 | 20.543184 | 1 |
GTAAGTA | 145 | 0.0038373629 | 20.540428 | 3 |
GTAACAT | 145 | 0.0038373629 | 20.540428 | 3 |
ATAACCA | 150 | 0.0046694363 | 19.855745 | 4 |
ATGGGGG | 1365 | 0.0 | 19.837128 | 18-19 |
GAGTACA | 3285 | 0.0 | 19.037207 | 12-13 |
AATTCGA | 145 | 2.1876494E-6 | 18.466578 | 24-25 |
AGAGTAC | 3095 | 0.0 | 18.185299 | 10-11 |