Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142556_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 458316 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1542 | 0.3364490875291284 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 742 | 0.16189703174229134 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 460 | 0.10036743207743129 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAACCTA | 75 | 0.0038861143 | 31.769821 | 5 |
TATTAGT | 115 | 2.7367158E-5 | 31.082577 | 4 |
GTATTAC | 125 | 4.8201517E-5 | 28.608511 | 1 |
GTATATA | 175 | 5.6040335E-7 | 27.2462 | 1 |
GGTATCA | 2555 | 0.0 | 25.426678 | 1 |
GTATAAT | 155 | 2.0795182E-4 | 23.071379 | 1 |
CATGGGG | 1970 | 0.0 | 22.378405 | 4 |
ATTTAGG | 225 | 4.990494E-6 | 21.19149 | 1 |
GTATCAA | 3120 | 0.0 | 21.013195 | 1 |
GGCTATT | 270 | 1.0902932E-6 | 19.856138 | 7 |
GTCGTGC | 90 | 5.790937E-4 | 19.828983 | 40-41 |
ATGGGGG | 1205 | 0.0 | 19.773748 | 5 |
TAGGGCT | 425 | 4.0017767E-11 | 19.624687 | 4 |
TTAGGGC | 420 | 7.239578E-10 | 18.439863 | 3 |
GGGCTAT | 260 | 1.7476974E-5 | 18.328743 | 6 |
CTATTGA | 260 | 1.7493472E-5 | 18.326736 | 9 |
ACATGGG | 4495 | 0.0 | 18.289972 | 3 |
AACGCAG | 3505 | 0.0 | 18.014984 | 7 |
TATCAAC | 3575 | 0.0 | 17.997463 | 2 |
GTACATG | 4860 | 0.0 | 17.782211 | 1 |