Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142631_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 803095 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4632 | 0.5767686263767051 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4289 | 0.5340588597862022 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2482 | 0.3090543459989167 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1251 | 0.15577235569888992 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 914 | 0.11380969872804586 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3185 | 0.0 | 65.188385 | 1 |
GTATCAA | 4795 | 0.0 | 43.165493 | 2 |
TATCAAC | 5940 | 0.0 | 35.245388 | 3 |
ATCAACG | 6115 | 0.0 | 33.944935 | 4 |
CAACGCA | 6260 | 0.0 | 33.158676 | 6 |
TCAACGC | 6400 | 0.0 | 32.433327 | 5 |
AACGCAG | 6640 | 0.0 | 31.26104 | 7 |
TATCACG | 80 | 0.0053715757 | 29.738295 | 2 |
ACGCAGA | 7260 | 0.0 | 28.673286 | 8 |
CGCAGAG | 7590 | 0.0 | 27.191536 | 9 |
GAGTACT | 3545 | 0.0 | 26.592495 | 12-13 |
CAGAGTA | 7870 | 0.0 | 25.355015 | 10-11 |
CTCAACG | 440 | 0.0 | 24.337393 | 1 |
GTGGTAT | 1355 | 0.0 | 24.147804 | 1 |
GCAGAGT | 7970 | 0.0 | 24.104063 | 9 |
GTACTTT | 4130 | 0.0 | 22.826473 | 14-15 |
CTATTAC | 235 | 2.910383E-7 | 22.783941 | 1 |
GTACATG | 6300 | 0.0 | 22.09681 | 1 |
ACATGGG | 6270 | 0.0 | 22.007288 | 3 |
TACATGG | 6510 | 0.0 | 21.652767 | 2 |