Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142593_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 297379 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 487 | 0.16376408556084995 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 412 | 0.13854374384203325 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 397 | 0.13349967549826988 | No Hit |
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA | 352 | 0.11836747046697985 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 325 | 0.10928814744820582 | No Hit |
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC | 317 | 0.10659797766486537 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTAGACT | 60 | 0.0012966405 | 39.730564 | 4 |
AAAACGC | 65 | 0.001922931 | 36.668182 | 5 |
ATGGGTG | 125 | 4.8229456E-5 | 28.601181 | 5 |
TTGTACG | 85 | 0.0071513955 | 28.040373 | 7 |
ACGGTTA | 55 | 7.7464443E-4 | 27.045664 | 46-47 |
GGTATCA | 1885 | 0.0 | 26.887072 | 1 |
GTACAAA | 160 | 8.570816E-6 | 26.08639 | 1 |
GGTAACA | 115 | 9.907389E-4 | 25.924362 | 1 |
GTAGGAC | 165 | 1.0924898E-5 | 25.283089 | 3 |
TCTAACG | 120 | 0.0012748583 | 24.827414 | 2 |
TAGGACT | 195 | 1.4383859E-6 | 24.44958 | 4 |
TAGTACT | 245 | 1.5832484E-8 | 24.324835 | 4 |
ATTTAGG | 300 | 2.1645974E-10 | 23.850414 | 1 |
CTAACGC | 125 | 0.001615469 | 23.838339 | 3 |
CGCCTAC | 150 | 1.666125E-4 | 23.834316 | 7 |
GTATCAA | 2175 | 0.0 | 23.286402 | 2 |
ATATTGG | 205 | 2.2289223E-6 | 23.24907 | 6 |
TTTAGGG | 310 | 3.274181E-10 | 23.065468 | 2 |
CTGTGCG | 240 | 3.495661E-7 | 22.344671 | 9 |
CTCGTCG | 215 | 3.3658162E-6 | 22.17146 | 9 |