FastQCFastQC Report
Sun 1 Jan 2017
ERR1142535_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1142535_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23525
Sequences flagged as poor quality0
Sequence length125
%GC41

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA970.412327311370882No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT630.26780021253985126No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT550.23379383634431458No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN400.17003188097768332No Hit
GCTGCTAGCTGGAGCCACCCGCAGTTCGAAAAAGTGAGCAAGGGCGAGGA350.1487778958554729No Hit
GTACATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG330.14027630180658873No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG290.1232731137088204No Hit
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC270.11477151965993623No Hit
GGTATCAACGCAGAGTACATGGGACTGCTGCTAGCTCCTCGCCCTTGCTC260.11052072263549415No Hit
GGTATCAACGCAGAGTACATGGGACTGCTCCTCGCCCTTGCTCACTTTTT260.11052072263549415No Hit
GTACATGGGACTGCTGCTAGCTCCTCGCCCTTGCTCACTTTTTCGAACTG240.10201912858660998No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGGGGGC208.382895E-489.23396
GTACAAA551.8189894E-1186.7159351
AGCCTAA201.7372804E-459.61720324-25
AACGAGG150.004178380659.61720330-31
CCTAACG201.7372804E-459.61720326-27
ACACACG150.00425011559.3618886-87
TACAAAA901.4879333E-952.9930732
GGCAAGC255.2286853E-447.69376420-21
GTAACAA951.3835961E-743.9284671
AAACATG803.6379788E-1240.98682814-15
CACAAAG600.001269915339.74488
ACAACAC1351.1878001E-939.74485
TCAACAC1104.3735236E-737.938224
TAACAAC650.001881869336.687512
CAGAGAA501.0265163E-535.77032510-11
TTTTGTG350.002735172434.0669724-25
AGAACAT350.002735172434.0669712-13
ACACAGA700.002707183834.066978
GGGGGCT700.002707183834.066977
CATGGGT700.002707183834.066974