FastQCFastQC Report
Sun 1 Jan 2017
ERR1142855_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1142855_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423324
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA25710.6073362247356635No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA16900.042.2986451
GTATCAA25550.037.7707861
ATCAACG30400.030.7395923
TATCAAC30950.030.5779552
CAACGCA31350.029.8080885
AACGCAG32200.028.8125086
TCAACGC32450.028.7976424
ACGCAGA35750.025.948347
CGCAGAG36700.025.279648
CATGGGT14000.024.2336484
GCAGAGT37800.024.2293249
GTGTAAG1300.0020359422.9117661
CCGCACA1300.002045775822.8927864
TGATCGC1300.002055650822.8738379
CAGAGTA37500.021.96498510-11
GTACACT4101.8189894E-1221.7760644
GTACATG48050.021.199941
TACATGG48400.020.6602652
TATTCTC2607.6451397E-720.6035065
ATACCAT1754.7917402E-420.3903926