Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142840_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 347221 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 452 | 0.13017645822113294 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 381 | 0.10972838624391956 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 355 | 0.10224035988606679 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTAGACT | 90 | 0.009511572 | 26.449223 | 4 |
GTACTAG | 140 | 1.0484211E-4 | 25.519337 | 1 |
CATGGGG | 1540 | 0.0 | 25.118174 | 4 |
TTAGAGT | 120 | 0.0012846948 | 24.796146 | 4 |
GGTATCA | 2070 | 0.0 | 23.875578 | 1 |
GTAAAAA | 285 | 3.1523086E-9 | 22.982327 | 1 |
GTATCCA | 130 | 0.0020402726 | 22.901968 | 1 |
TAGAGTG | 130 | 0.0020471348 | 22.88875 | 5 |
ATGGGGA | 420 | 0.0 | 22.670763 | 5 |
ATGGGCG | 80 | 2.6181014E-4 | 22.302048 | 18-19 |
ATGGGGG | 935 | 0.0 | 21.003794 | 5 |
TAGCCTG | 145 | 0.0038579684 | 20.520948 | 5 |
TAGGCAT | 270 | 1.0989006E-6 | 19.836918 | 5 |
ATACGGG | 180 | 1.709238E-5 | 19.836916 | 3 |
ATGGGGC | 455 | 5.456968E-12 | 19.618929 | 5 |
GTATCAA | 2465 | 0.0 | 19.555258 | 2 |
AGAGAGT | 155 | 0.005698099 | 19.183176 | 6 |
GATTACT | 140 | 1.5681235E-6 | 19.120178 | 34-35 |
GTATAAG | 250 | 1.2492968E-5 | 19.054438 | 1 |
CGAATAG | 110 | 1.0210062E-4 | 18.93114 | 38-39 |