#! /bin/bash

cp -r ../Cell_Ranger_Study_Data_Files/GSE143607/CR7.1.0_GSE143607/run_count_CR7_1_0_GSE143607/outs/filtered_feature_bc_matrix/ GSE143607
cp -r ../Cell_Ranger_Study_Data_Files/fixed_neurons_6days_2000/CR7.1.0_fixed_neurons_6days_2000/run_count_CR7_1_0_fixed_neurons_6days_2000/outs/filtered_feature_bc_matrix/ fixed_neurons_6days_2000
cp -r ../Cell_Ranger_Study_Data_Files/neurons_2000/CR7.1.0_neurons_2000/run_count_CR7_1_0_neurons_2000/outs/filtered_feature_bc_matrix/ neurons_2000
cp -r ../Cell_Ranger_Study_Data_Files/nuclei_2k/CR7.1.0_nuclei_2k/run_count_CR7_1_0_nuclei_2k/outs/filtered_feature_bc_matrix/ nuclei_2k
cp -r ../Cell_Ranger_Study_Data_Files/pbmc4k/CR7.1.0_pbmc4k/run_count_CR7_1_0_pbmc4k/outs/filtered_feature_bc_matrix/ pbmc4k
cp -r ../Cell_Ranger_Study_Data_Files/t_3k/CR7.1.0_t_3k/run_count_CR7_1_0_t_3k/outs/filtered_feature_bc_matrix/ t_3k
cp -r ../Cell_Ranger_Study_Data_Files/vdj_v1_hs_pbmc2_5gex_protein/CR7.1.0_vdj_v1_hs_pbmc2_5gex_protein/run_count_CR7_1_0_vdj_v1_hs_pbmc2_5gex_protein/outs/filtered_feature_bc_matrix/ vdj_v1_hs_pbmc2_5gex_protein
cp -r ../Cell_Ranger_Study_Data_Files/Parent_NGSC3_DI_HodgkinsLymphoma/CR7.1.0_Parent_NGSC3_DI_HodgkinsLymphoma/run_count_CR7_1_0_Parent_NGSC3_DI_HodgkinsLymphoma/outs/filtered_feature_bc_matrix/ Parent_NGSC3_DI_HodgkinsLymphoma
cp -r ../Cell_Ranger_Study_Data_Files/fixed_neurons_2000/CR7.1.0_fixed_neurons_2000/run_count_CR7_1_0_fixed_neurons_2000/outs/filtered_feature_bc_matrix/ fixed_neurons_2000
cp -r ../Cell_Ranger_Study_Data_Files/neuron_9k/CR7.1.0_neuron_9k/run_count_CR7_1_0_neuron_9k/outs/filtered_feature_bc_matrix/ neuron_9k
cp -r ../Cell_Ranger_Study_Data_Files/neurons_900/CR7.1.0_neurons_900/run_count_CR7_1_0_neurons_900/outs/filtered_feature_bc_matrix/ neurons_900
cp -r ../Cell_Ranger_Study_Data_Files/nuclei_900/CR7.1.0_nuclei_900/run_count_CR7_1_0_nuclei_900/outs/filtered_feature_bc_matrix/ nuclei_900
cp -r ../Cell_Ranger_Study_Data_Files/pbmc8k/CR7.1.0_pbmc8k/run_count_CR7_1_0_pbmc8k/outs/filtered_feature_bc_matrix/ pbmc8k
cp -r ../Cell_Ranger_Study_Data_Files/t_4k/CR7.1.0_t_4k/run_count_CR7_1_0_t_4k/outs/filtered_feature_bc_matrix/ t_4k