SCPortalen


9k Brain Cells from an E18 Mouse


Cells from cortex, hippocampus and subventricular zone of an E18 mouse. (9k cells are increased to 11k from CellRanger v3.1 onwards)

neuron_9k Samples




BAM Files Run Accession Number Sample Accession Number Organism Organ/Tissue Dev. Stage Cell Type Sequencer Protocol Assay Type Library Layout Ontology Term Cell Cycle Phase

FASTQC Report



FASTQC File ID Cell Accession Number FASTQC Report Link No. Sequence Tags

Data Resources


Organism Run Metadata Link Data Repository Link Pubmed Record Link Author Provided Files DAVID Annotation Chart Link DAVID Annotation Table Link Gene Body Coverage Matrix Link PCA Matrix Link Krona Plot Img Link Unmapped Reads Link Expression Correlation