SCPortalen


Single-cell RNAseq reveals cell adhesion molecule profiles in electrophysiologically defined neurons.


In brain, signaling mediated by cell adhesion molecules defines the identity and functional properties of synapses. The specificity of presynaptic and postsynaptic interactions that is presumably mediated by cell adhesion molecules suggests that there exists a logic that could explain neuronal connectivity at the molecular level. Despite its importance, however, the nature of such logic is poorly understood, and even basic parameters, such as the number, identity, and single-cell expression profiles of candidate synaptic cell adhesion molecules, are not known. Here, we devised a comprehensive list of genes involved in cell adhesion, and used single-cell RNA sequencing (RNAseq) to analyze their expression in electrophysiologically defined interneurons and projection neurons. We compared the cell type-specific expression of these genes with that of genes involved in transmembrane ion conductances (i.e., channels), exocytosis, and rho/rac signaling, which regulates the actin cytoskeleton. Using these data, we identified two independent, developmentally regulated networks of interacting genes encoding molecules involved in cell adhesion, exocytosis, and signal transduction. Our approach provides a framework for a presumed cell adhesion and signaling code in neurons, enables correlating electrophysiological with molecular properties of neurons, and suggests avenues toward understanding synaptic specificity.

GSE75386 Samples



Cell Metadata and BAM Files

Bulk Download

BAM Files Run Accession Number Sample Accession Number Organism Organ/Tissue Dev. Stage Cell Type Sequencer Protocol Assay Type Library Layout Ontology Term Cell Cycle Phase
SRR3082987 SAMN04383354 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2
SRR3082988 SAMN04383355 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] S
SRR3082989 SAMN04383356 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3082990 SAMN04383357 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3082991 SAMN04383358 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3082992 SAMN04383359 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2
SRR3082993 SAMN04383360 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3082994 SAMN04383361 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] S
SRR3082995 SAMN04383362 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3082996 SAMN04383363 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3082997 SAMN04383364 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2
SRR3082998 SAMN04383365 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] M.G1
SRR3082999 SAMN04383366 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083000 SAMN04383367 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083001 SAMN04383368 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083002 SAMN04383369 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083003 SAMN04383370 Mus musculus Brain (Hippocampus) Adult HA1 parvalbumin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2
SRR3083004 SAMN04383371 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083005 SAMN04383372 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] S
SRR3083006 SAMN04383373 Mus musculus Brain (Hippocampus) Adult HA1 parvalbumin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] S
SRR3083007 SAMN04383374 Mus musculus Brain (Hippocampus) Adult HA1 parvalbumin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] S
SRR3083008 SAMN04383375 Mus musculus Brain (Hippocampus) Adult HA1 parvalbumin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2.M
SRR3083009 SAMN04383376 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] S
SRR3083010 SAMN04383377 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2.M
SRR3083011 SAMN04383378 Mus musculus Brain (Hippocampus) Adult HA1 parvalbumin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2.M
SRR3083012 SAMN04383379 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083013 SAMN04383380 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] S
SRR3083014 SAMN04383328 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2.M
SRR3083015 SAMN04383329 Mus musculus Brain (Hippocampus) Adult HA1 parvalbumin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083016 SAMN04383330 Mus musculus Brain (Hippocampus) Adult HA1 parvalbumin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083017 SAMN04383381 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2
SRR3083018 SAMN04383382 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2
SRR3083019 SAMN04383383 Mus musculus Brain (Hippocampus) Adult HA1 parvalbumin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083020 SAMN04383324 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] S
SRR3083021 SAMN04383325 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2
SRR3083022 SAMN04383326 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] M.G1
SRR3083023 SAMN04383327 Mus musculus Brain (Hippocampus) Adult HA1 parvalbumin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] M.G1
SRR3083024 SAMN04383331 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2
SRR3083025 SAMN04383332 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] G2.M
SRR3083026 SAMN04383333 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] G2.M
SRR3083027 SAMN04383334 Mus musculus Brain (Hippocampus) Adult Hubiculum regular firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083028 SAMN04383335 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] G2.M
SRR3083029 SAMN04383336 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] G1.S
SRR3083030 SAMN04383337 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] G1.S
SRR3083031 SAMN04383338 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083032 SAMN04383339 Mus musculus Brain (Hippocampus) Adult Hubiculum regular firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083033 SAMN04383340 Mus musculus Brain (Hippocampus) Adult Hubiculum regular firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083034 SAMN04383341 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083035 SAMN04383342 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083036 SAMN04383343 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083037 SAMN04383344 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083038 SAMN04383345 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] G2.M
SRR3083039 SAMN04383346 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083040 SAMN04383347 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083041 SAMN04383348 Mus musculus Brain (Hippocampus) Adult Hubiculum regular firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] G2.M
SRR3083042 SAMN04383349 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] G2.M
SRR3083043 SAMN04383350 Mus musculus Brain (Hippocampus) Adult Hubiculum regular firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] G2.M
SRR3083044 SAMN04383351 Mus musculus Brain (Hippocampus) Adult Hubiculum regular firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083045 SAMN04383352 Mus musculus Brain (Hippocampus) Adult Hubiculum regular firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] G1.S
SRR3083046 SAMN04383353 Mus musculus Brain (Hippocampus) Adult Hubiculum regular firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] G2.M
SRR3083047 SAMN04383384 Mus musculus Brain (Hippocampus) Adult Hubiculum regular firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] S
SRR3083048 SAMN04383385 Mus musculus Brain (Hippocampus) Adult Hubiculum regular firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] G2
SRR3083049 SAMN04383386 Mus musculus Brain (Hippocampus) Adult Hubiculum regular firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083050 SAMN04383387 Mus musculus Brain (Hippocampus) Adult Hubiculum regular firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] S
SRR3083051 SAMN04383388 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] G2.M
SRR3083052 SAMN04383389 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083053 SAMN04383390 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] G1.S
SRR3083054 SAMN04383391 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] S
SRR3083055 SAMN04383392 Mus musculus Brain (Hippocampus) Adult Hubiculum regular firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] S
SRR3083056 SAMN04383393 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083057 SAMN04383394 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083058 SAMN04383395 Mus musculus Brain (Hippocampus) Adult Hubiculum burst firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] M.G1
SRR3083059 SAMN04383396 Mus musculus Brain (Hippocampus) Adult Hubiculum regular firing pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End UBERON:0002191 [Subiculum] G1.S
SRR3083060 SAMN04383397 Mus musculus Brain (Hippocampus) Adult HA1 parvalbumin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2.M
SRR3083061 SAMN04383398 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] M.G1
SRR3083062 SAMN04383399 Mus musculus Brain (Hippocampus) Adult HA1 parvalbumin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2
SRR3083063 SAMN04383400 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2.M
SRR3083064 SAMN04383401 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2
SRR3083065 SAMN04383402 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] M.G1
SRR3083066 SAMN04383403 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] S
SRR3083067 SAMN04383404 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] M.G1
SRR3083068 SAMN04383405 Mus musculus Brain (Hippocampus) Adult HA1 parvalbumin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] S
SRR3083069 SAMN04383406 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083070 SAMN04383407 Mus musculus Brain (Hippocampus) Adult HA1 parvalbumin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083071 SAMN04383408 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] S
SRR3083072 SAMN04383409 Mus musculus Brain (Hippocampus) Adult HA1 parvalbumin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083073 SAMN04383410 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083074 SAMN04383411 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083075 SAMN04383412 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083076 SAMN04383294 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083077 SAMN04383295 Mus musculus Brain (Hippocampus) Adult HA1 pyramidal cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G1.S
SRR3083078 SAMN04383296 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2
SRR3083079 SAMN04383297 Mus musculus Brain (Hippocampus) Adult HA1 cholecystokinin cell NextSeq 500 SMARTer RNA-Seq Paired-End MA:0003186 [CA1 pyramidal cell layer] G2.M
SRR3083080 SAMN04383298 Mus musculus Brain (Hippocampus) Adult Hippocampus NextSeq 500 SMARTer RNA-Seq Paired-End MA:0000191 [Hippocampus] G2
SRR3083081 SAMN04383299 Mus musculus Brain (Hippocampus) Adult Hippocampus NextSeq 500 SMARTer RNA-Seq Paired-End MA:0000191 [Hippocampus] G2
SRR3083082 SAMN04383300 Mus musculus Brain (Hippocampus) Adult Hippocampus NextSeq 500 SMARTer RNA-Seq Paired-End MA:0000191 [Hippocampus] G2
SRR3083083 SAMN04383301 Mus musculus Brain (Hippocampus) Adult Hippocampus NextSeq 500 SMARTer RNA-Seq Paired-End MA:0000191 [Hippocampus] G2.M
SRR3083084 SAMN04383302 Mus musculus Brain (Hippocampus) Adult Hippocampus NextSeq 500 SMARTer RNA-Seq Paired-End MA:0000191 [Hippocampus] G2.M
SRR3083085 SAMN04383303 Mus musculus Brain (Hippocampus) Adult Hippocampus NextSeq 500 SMARTer RNA-Seq Paired-End MA:0000191 [Hippocampus] G2.M
SRR3083086 SAMN04383304 Mus musculus Brain (Hippocampus) Adult Hippocampus NextSeq 500 SMARTer RNA-Seq Paired-End MA:0000191 [Hippocampus] G1.S
SRR3083087 SAMN04383305 Mus musculus Brain (Hippocampus) Adult Hippocampus NextSeq 500 SMARTer RNA-Seq Paired-End MA:0000191 [Hippocampus] G2.M
SRR3083088 SAMN04383306 Mus musculus Brain (Hippocampus) Adult Hippocampus NextSeq 500 SMARTer RNA-Seq Paired-End MA:0000191 [Hippocampus] G2.M
SRR3083089 SAMN04383307 Mus musculus Brain (Hippocampus) Adult Hippocampus NextSeq 500 SMARTer RNA-Seq Paired-End MA:0000191 [Hippocampus] G2.M
SRR3083090 SAMN04383308 Mus musculus Brain (Hippocampus) Adult Hippocampus NextSeq 500 SMARTer RNA-Seq Paired-End MA:0000191 [Hippocampus] G2.M
SRR3083091 SAMN04383309 Mus musculus Brain (Hippocampus) Adult Hippocampus NextSeq 500 SMARTer RNA-Seq Paired-End MA:0000191 [Hippocampus] G2.M
SRR3083092 SAMN04383310 Mus musculus Brain (Hippocampus) Adult Hippocampus NextSeq 500 SMARTer RNA-Seq Paired-End MA:0000191 [Hippocampus] G2
SRR3083093 SAMN04383311 Mus musculus Brain (Hippocampus) Adult Hippocampus NextSeq 500 SMARTer RNA-Seq Paired-End MA:0000191 [Hippocampus] G2
SRR3083094 SAMN04383312 Mus musculus Brain (Hippocampus) Adult Hippocampus NextSeq 500 SMARTer RNA-Seq Paired-End MA:0000191 [Hippocampus] G2

FASTQC Report



FASTQC File ID Cell Accession Number FASTQC Report Link No. Sequence Tags
SRR3082987_1 SRR3082987 Preview 15095148
SRR3082987_2 SRR3082987 Preview 15095148
SRR3082988_1 SRR3082988 Preview 4686952
SRR3082988_2 SRR3082988 Preview 4686952
SRR3082989_1 SRR3082989 Preview 14468541
SRR3082989_2 SRR3082989 Preview 14468541
SRR3082990_1 SRR3082990 Preview 12082263
SRR3082990_2 SRR3082990 Preview 12082263
SRR3082991_1 SRR3082991 Preview 7763127
SRR3082991_2 SRR3082991 Preview 7763127
SRR3082992_1 SRR3082992 Preview 4228365
SRR3082992_2 SRR3082992 Preview 4228365
SRR3082993_1 SRR3082993 Preview 11986941
SRR3082993_2 SRR3082993 Preview 11986941
SRR3082994_1 SRR3082994 Preview 5895199
SRR3082994_2 SRR3082994 Preview 5895199
SRR3082995_1 SRR3082995 Preview 10249300
SRR3082995_2 SRR3082995 Preview 10249300
SRR3082996_1 SRR3082996 Preview 12487163
SRR3082996_2 SRR3082996 Preview 12487163
SRR3082997_1 SRR3082997 Preview 7714629
SRR3082997_2 SRR3082997 Preview 7714629
SRR3082998_1 SRR3082998 Preview 9460211
SRR3082998_2 SRR3082998 Preview 9460211
SRR3082999_1 SRR3082999 Preview 15803409
SRR3082999_2 SRR3082999 Preview 15803409
SRR3083000_1 SRR3083000 Preview 10363454
SRR3083000_2 SRR3083000 Preview 10363454
SRR3083001_1 SRR3083001 Preview 17485524
SRR3083001_2 SRR3083001 Preview 17485524
SRR3083002_1 SRR3083002 Preview 4841152
SRR3083002_2 SRR3083002 Preview 4841152
SRR3083003_1 SRR3083003 Preview 8191784
SRR3083003_2 SRR3083003 Preview 8191784
SRR3083004_1 SRR3083004 Preview 9717114
SRR3083004_2 SRR3083004 Preview 9717114
SRR3083005_1 SRR3083005 Preview 31551035
SRR3083005_2 SRR3083005 Preview 31551035
SRR3083006_1 SRR3083006 Preview 24265284
SRR3083006_2 SRR3083006 Preview 24265284
SRR3083007_1 SRR3083007 Preview 6962688
SRR3083007_2 SRR3083007 Preview 6962688
SRR3083008_1 SRR3083008 Preview 23297322
SRR3083008_2 SRR3083008 Preview 23297322
SRR3083009_1 SRR3083009 Preview 12435700
SRR3083009_2 SRR3083009 Preview 12435700
SRR3083010_1 SRR3083010 Preview 9465688
SRR3083010_2 SRR3083010 Preview 9465688
SRR3083011_1 SRR3083011 Preview 7634831
SRR3083011_2 SRR3083011 Preview 7634831
SRR3083012_1 SRR3083012 Preview 7793487
SRR3083012_2 SRR3083012 Preview 7793487
SRR3083013_1 SRR3083013 Preview 9537517
SRR3083013_2 SRR3083013 Preview 9537517
SRR3083014_1 SRR3083014 Preview 11454965
SRR3083014_2 SRR3083014 Preview 11454965
SRR3083015_1 SRR3083015 Preview 12756324
SRR3083015_2 SRR3083015 Preview 12756324
SRR3083016_1 SRR3083016 Preview 2514999
SRR3083016_2 SRR3083016 Preview 2514999
SRR3083017_1 SRR3083017 Preview 20309854
SRR3083017_2 SRR3083017 Preview 20309854
SRR3083018_1 SRR3083018 Preview 5244438
SRR3083018_2 SRR3083018 Preview 5244438
SRR3083019_1 SRR3083019 Preview 7016168
SRR3083019_2 SRR3083019 Preview 7016168
SRR3083020_1 SRR3083020 Preview 17303624
SRR3083020_2 SRR3083020 Preview 17303624
SRR3083021_1 SRR3083021 Preview 43003879
SRR3083021_2 SRR3083021 Preview 43003879
SRR3083022_1 SRR3083022 Preview 2228929
SRR3083022_2 SRR3083022 Preview 2228929
SRR3083023_1 SRR3083023 Preview 3906994
SRR3083023_2 SRR3083023 Preview 3906994
SRR3083024_1 SRR3083024 Preview 1065787
SRR3083024_2 SRR3083024 Preview 1065787
SRR3083025_1 SRR3083025 Preview 4736626
SRR3083025_2 SRR3083025 Preview 4736626
SRR3083026_1 SRR3083026 Preview 2805530
SRR3083026_2 SRR3083026 Preview 2805530
SRR3083027_1 SRR3083027 Preview 3687993
SRR3083027_2 SRR3083027 Preview 3687993
SRR3083028_1 SRR3083028 Preview 3132108
SRR3083028_2 SRR3083028 Preview 3132108
SRR3083029_1 SRR3083029 Preview 2242808
SRR3083029_2 SRR3083029 Preview 2242808
SRR3083030_1 SRR3083030 Preview 4718832
SRR3083030_2 SRR3083030 Preview 4718832
SRR3083031_1 SRR3083031 Preview 4233572
SRR3083031_2 SRR3083031 Preview 4233572
SRR3083032_1 SRR3083032 Preview 4486790
SRR3083032_2 SRR3083032 Preview 4486790
SRR3083033_1 SRR3083033 Preview 4855432
SRR3083033_2 SRR3083033 Preview 4855432
SRR3083034_1 SRR3083034 Preview 5040068
SRR3083034_2 SRR3083034 Preview 5040068
SRR3083035_1 SRR3083035 Preview 5065188
SRR3083035_2 SRR3083035 Preview 5065188
SRR3083036_1 SRR3083036 Preview 5592739
SRR3083036_2 SRR3083036 Preview 5592739
SRR3083037_1 SRR3083037 Preview 5604557
SRR3083037_2 SRR3083037 Preview 5604557
SRR3083038_1 SRR3083038 Preview 4439980
SRR3083038_2 SRR3083038 Preview 4439980
SRR3083039_1 SRR3083039 Preview 3929385
SRR3083039_2 SRR3083039 Preview 3929385
SRR3083040_1 SRR3083040 Preview 3050936
SRR3083040_2 SRR3083040 Preview 3050936
SRR3083041_1 SRR3083041 Preview 7969880
SRR3083041_2 SRR3083041 Preview 7969880
SRR3083042_1 SRR3083042 Preview 4678368
SRR3083042_2 SRR3083042 Preview 4678368
SRR3083043_1 SRR3083043 Preview 4107664
SRR3083043_2 SRR3083043 Preview 4107664
SRR3083044_1 SRR3083044 Preview 5097900
SRR3083044_2 SRR3083044 Preview 5097900
SRR3083045_1 SRR3083045 Preview 5874859
SRR3083045_2 SRR3083045 Preview 5874859
SRR3083046_1 SRR3083046 Preview 5391229
SRR3083046_2 SRR3083046 Preview 5391229
SRR3083047_1 SRR3083047 Preview 3662567
SRR3083047_2 SRR3083047 Preview 3662567
SRR3083048_1 SRR3083048 Preview 4774434
SRR3083048_2 SRR3083048 Preview 4774434
SRR3083049_1 SRR3083049 Preview 4854480
SRR3083049_2 SRR3083049 Preview 4854480
SRR3083050_1 SRR3083050 Preview 4149115
SRR3083050_2 SRR3083050 Preview 4149115
SRR3083051_1 SRR3083051 Preview 5757752
SRR3083051_2 SRR3083051 Preview 5757752
SRR3083052_1 SRR3083052 Preview 6755872
SRR3083052_2 SRR3083052 Preview 6755872
SRR3083053_1 SRR3083053 Preview 6650924
SRR3083053_2 SRR3083053 Preview 6650924
SRR3083054_1 SRR3083054 Preview 2890033
SRR3083054_2 SRR3083054 Preview 2890033
SRR3083055_1 SRR3083055 Preview 5021725
SRR3083055_2 SRR3083055 Preview 5021725
SRR3083056_1 SRR3083056 Preview 4044740
SRR3083056_2 SRR3083056 Preview 4044740
SRR3083057_1 SRR3083057 Preview 3762648
SRR3083057_2 SRR3083057 Preview 3762648
SRR3083058_1 SRR3083058 Preview 3309029
SRR3083058_2 SRR3083058 Preview 3309029
SRR3083059_1 SRR3083059 Preview 3488850
SRR3083059_2 SRR3083059 Preview 3488850
SRR3083060_1 SRR3083060 Preview 10039725
SRR3083060_2 SRR3083060 Preview 10039725
SRR3083061_1 SRR3083061 Preview 19239984
SRR3083061_2 SRR3083061 Preview 19239984
SRR3083062_1 SRR3083062 Preview 13209204
SRR3083062_2 SRR3083062 Preview 13209204
SRR3083063_1 SRR3083063 Preview 9918965
SRR3083063_2 SRR3083063 Preview 9918965
SRR3083064_1 SRR3083064 Preview 19995323
SRR3083064_2 SRR3083064 Preview 19995323
SRR3083065_1 SRR3083065 Preview 24927859
SRR3083065_2 SRR3083065 Preview 24927859
SRR3083066_1 SRR3083066 Preview 15890714
SRR3083066_2 SRR3083066 Preview 15890714
SRR3083067_1 SRR3083067 Preview 15229504
SRR3083067_2 SRR3083067 Preview 15229504
SRR3083068_1 SRR3083068 Preview 14634150
SRR3083068_2 SRR3083068 Preview 14634150
SRR3083069_1 SRR3083069 Preview 18851329
SRR3083069_2 SRR3083069 Preview 18851329
SRR3083070_1 SRR3083070 Preview 16522951
SRR3083070_2 SRR3083070 Preview 16522951
SRR3083071_1 SRR3083071 Preview 7634409
SRR3083071_2 SRR3083071 Preview 7634409
SRR3083072_1 SRR3083072 Preview 10148550
SRR3083072_2 SRR3083072 Preview 10148550
SRR3083073_1 SRR3083073 Preview 6786906
SRR3083073_2 SRR3083073 Preview 6786906
SRR3083074_1 SRR3083074 Preview 13578758
SRR3083074_2 SRR3083074 Preview 13578758
SRR3083075_1 SRR3083075 Preview 2365784
SRR3083075_2 SRR3083075 Preview 2365784
SRR3083076_1 SRR3083076 Preview 7736229
SRR3083076_2 SRR3083076 Preview 7736229
SRR3083077_1 SRR3083077 Preview 13903271
SRR3083077_2 SRR3083077 Preview 13903271
SRR3083078_1 SRR3083078 Preview 3446296
SRR3083078_2 SRR3083078 Preview 3446296
SRR3083079_1 SRR3083079 Preview 9615649
SRR3083079_2 SRR3083079 Preview 9615649
SRR3083080_1 SRR3083080 Preview 3593709
SRR3083080_2 SRR3083080 Preview 3593709
SRR3083081_1 SRR3083081 Preview 17169425
SRR3083081_2 SRR3083081 Preview 17169425
SRR3083082_1 SRR3083082 Preview 20158806
SRR3083082_2 SRR3083082 Preview 20158806
SRR3083083_1 SRR3083083 Preview 22930396
SRR3083083_2 SRR3083083 Preview 22930396
SRR3083084_1 SRR3083084 Preview 7520813
SRR3083084_2 SRR3083084 Preview 7520813
SRR3083085_1 SRR3083085 Preview 22941526
SRR3083085_2 SRR3083085 Preview 22941526
SRR3083086_1 SRR3083086 Preview 24227360
SRR3083086_2 SRR3083086 Preview 24227360
SRR3083087_1 SRR3083087 Preview 22405677
SRR3083087_2 SRR3083087 Preview 22405677
SRR3083088_1 SRR3083088 Preview 12094171
SRR3083088_2 SRR3083088 Preview 12094171
SRR3083089_1 SRR3083089 Preview 12971737
SRR3083089_2 SRR3083089 Preview 12971737
SRR3083090_1 SRR3083090 Preview 23742600
SRR3083090_2 SRR3083090 Preview 23742600
SRR3083091_1 SRR3083091 Preview 25490674
SRR3083091_2 SRR3083091 Preview 25490674
SRR3083092_1 SRR3083092 Preview 6132559
SRR3083092_2 SRR3083092 Preview 6132559
SRR3083093_1 SRR3083093 Preview 8105103
SRR3083093_2 SRR3083093 Preview 8105103
SRR3083094_1 SRR3083094 Preview 17854047
SRR3083094_2 SRR3083094 Preview 17854047

Organism : Mus musculus

Download :

File Size : 233M

Mouse Cell Data

Image Currently Unavailable
tSNE image.
Image Currently Unavailable
PCA image.
Image Currently Unavailable
Gene Body Coverage image.

Data Resources


Organism Run Metadata Link Data Repository Link Pubmed Record Link Author Provided Files DAVID Annotation Chart Link DAVID Annotation Table Link Gene Body Coverage Matrix Link PCA Matrix Link Krona Plot Img Link Unmapped Reads Link Expression Correlation
Mus musculus