SCPortalen


Single-cell RNA-seq reveals distinct injury responses in different types of DRG sensory neurons.


Peripheral nerve injury leads to various injury-induced responses in sensory neurons including physiological pain, neuronal cell death, and nerve regeneration. In this study, we performed single-cell RNA-sequencing (scRNA-seq) analysis of mouse nonpeptidergic nociceptors (NP), peptidergic nociceptors (PEP), and large myelinated sensory neurons (LM) under both control and injury conditions at 3 days after sciatic nerve transection (SNT). After performing principle component and weighted gene co-expression network analysis, we categorized dorsal root ganglion (DRG) neurons into different subtypes and discovered co-regulated injury-response genes including novel regeneration associated genes (RAGs) in association with neuronal development, protein translation and cytoplasm transportation. In addition, we found significant up-regulation of the genes associated with cell death such as Pdcd2 in a subset of NP neurons after axotomy, implicating their actions in neuronal cell death upon nerve injury. Our study revealed the distinctive and sustained heterogeneity of transcriptomic responses to injury at single neuron level, implicating the involvement of different gene regulatory networks in nerve regeneration, neuronal cell death and neuropathy in different population of DRG neurons.

GSE71453 Samples



Cell Metadata and BAM Files

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BAM Files Run Accession Number Sample Accession Number Organism Organ/Tissue Dev. Stage Cell Type Sequencer Protocol Assay Type Library Layout Ontology Term Cell Cycle Phase
SRR2131939 SAMN03940887 Mus musculus Central nervous system (DRG) Adult L5 DRG intact bulk cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] S
SRR2131940 SAMN03940888 Mus musculus Central nervous system (DRG) Adult L5 DRG intact bulk cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] S
SRR2131941 SAMN03940889 Mus musculus Central nervous system (DRG) Adult L5 DRG intact bulk cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G2
SRR2131942 SAMN03940890 Mus musculus Central nervous system (DRG) Adult L5 DRG intact bulk cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131943 SAMN03940891 Mus musculus Central nervous system (DRG) Adult L5 DRG intact bulk cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131944 SAMN03940892 Mus musculus Central nervous system (DRG) Adult L5 DRG intact bulk cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131945 SAMN03940893 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] S
SRR2131946 SAMN03940894 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131947 SAMN03940895 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131948 SAMN03940896 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131949 SAMN03940897 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131950 SAMN03940898 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131951 SAMN03940899 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131952 SAMN03940900 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131953 SAMN03940901 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131954 SAMN03940902 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131955 SAMN03940903 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] S
SRR2131956 SAMN03940904 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131957 SAMN03940905 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131959 SAMN03940907 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131960 SAMN03940908 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131961 SAMN03940909 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131962 SAMN03940910 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2131963 SAMN03940911 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131964 SAMN03940912 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131965 SAMN03940913 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131966 SAMN03940914 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131967 SAMN03940915 Mus musculus Central nervous system (DRG) Adult L5 DRG intact single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2131968 SAMN03940916 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131969 SAMN03940917 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2131970 SAMN03940918 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] S
SRR2131971 SAMN03940919 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G2
SRR2131972 SAMN03940920 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G2
SRR2131973 SAMN03940921 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131974 SAMN03940922 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2131975 SAMN03940923 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] S
SRR2131976 SAMN03940924 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131977 SAMN03940925 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2131978 SAMN03940926 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2131979 SAMN03940927 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G2
SRR2131980 SAMN03940928 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] S
SRR2131981 SAMN03940929 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] S
SRR2131982 SAMN03940930 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G2
SRR2131983 SAMN03940931 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131984 SAMN03940932 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131985 SAMN03940933 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131986 SAMN03940934 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G2
SRR2131987 SAMN03940935 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G2
SRR2131988 SAMN03940936 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2131989 SAMN03940937 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2131990 SAMN03940938 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2131991 SAMN03940939 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2131992 SAMN03940940 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G2
SRR2131993 SAMN03940941 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G2
SRR2131994 SAMN03940942 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2131995 SAMN03940943 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G2
SRR2131996 SAMN03940872 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G2
SRR2131997 SAMN03940873 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2131998 SAMN03940874 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] S
SRR2131999 SAMN03940944 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] S
SRR2132000 SAMN03940945 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2132001 SAMN03940946 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2132002 SAMN03940869 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] S
SRR2132003 SAMN03940870 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G2
SRR2132004 SAMN03940871 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2132005 SAMN03940875 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2132006 SAMN03940876 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] S
SRR2132007 SAMN03940877 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] M.G1
SRR2132008 SAMN03940878 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2132009 SAMN03940879 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] S
SRR2132010 SAMN03940880 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] S
SRR2132011 SAMN03940881 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] S
SRR2132012 SAMN03940882 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2132013 SAMN03940883 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2132014 SAMN03940884 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G1.S
SRR2132016 SAMN03940886 Mus musculus Central nervous system (DRG) Adult L5 DRG injury single cell Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Single-End UBERON:0000044 [dorsal root ganglion] G2
SRR3710551 SAMN05283965 Mus musculus Central nervous system (DRG) Adult Single DRG from control side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710552 SAMN05283966 Mus musculus Central nervous system (DRG) Adult Single DRG from control side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710553 SAMN05283967 Mus musculus Central nervous system (DRG) Adult Single DRG from control side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710554 SAMN05283968 Mus musculus Central nervous system (DRG) Adult Single DRG from control side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710555 SAMN05283970 Mus musculus Central nervous system (DRG) Adult Single DRG from control side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710556 SAMN05283971 Mus musculus Central nervous system (DRG) Adult Single DRG from control side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710557 SAMN05283972 Mus musculus Central nervous system (DRG) Adult Single DRG from control side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710558 SAMN05283969 Mus musculus Central nervous system (DRG) Adult Single DRG from control side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710559 SAMN05283973 Mus musculus Central nervous system (DRG) Adult Single DRG from control side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710560 SAMN05283974 Mus musculus Central nervous system (DRG) Adult Single DRG from control side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710561 SAMN05283975 Mus musculus Central nervous system (DRG) Adult Single DRG from control side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710562 SAMN05283976 Mus musculus Central nervous system (DRG) Adult Single DRG from control side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710563 SAMN05283977 Mus musculus Central nervous system (DRG) Adult Single DRG from control side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710564 SAMN05283978 Mus musculus Central nervous system (DRG) Adult Single DRG from control side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710565 SAMN05283979 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710566 SAMN05283980 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710567 SAMN05283981 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710568 SAMN05283982 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710569 SAMN05283983 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710570 SAMN05283984 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710571 SAMN05283985 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710572 SAMN05283986 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710573 SAMN05283987 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710574 SAMN05283988 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710575 SAMN05283989 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710576 SAMN05283990 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710577 SAMN05283991 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710578 SAMN05283992 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710579 SAMN05283993 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710580 SAMN05283994 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710581 SAMN05283995 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710582 SAMN05283996 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710583 SAMN05283997 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710584 SAMN05283998 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710585 SAMN05283999 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710586 SAMN05284000 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710587 SAMN05284001 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710588 SAMN05284002 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710589 SAMN05284003 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M
SRR3710590 SAMN05284004 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710591 SAMN05284005 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710592 SAMN05284006 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G1.S
SRR3710593 SAMN05284007 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710594 SAMN05284008 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710595 SAMN05284009 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710596 SAMN05284010 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2
SRR3710597 SAMN05284011 Mus musculus Central nervous system (DRG) Adult Single DRG from SNT side NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000044 [dorsal root ganglion] G2.M

FASTQC Report



FASTQC File ID Cell Accession Number FASTQC Report Link No. Sequence Tags
SRR2131939 SRR2131939 Preview 3817400
SRR2131940 SRR2131940 Preview 2668519
SRR2131941 SRR2131941 Preview 4465010
SRR2131942 SRR2131942 Preview 2343857
SRR2131943 SRR2131943 Preview 2663386
SRR2131944 SRR2131944 Preview 1458025
SRR2131945 SRR2131945 Preview 3507850
SRR2131946 SRR2131946 Preview 3618383
SRR2131947 SRR2131947 Preview 2209062
SRR2131948 SRR2131948 Preview 2793376
SRR2131949 SRR2131949 Preview 3055325
SRR2131950 SRR2131950 Preview 3613036
SRR2131951 SRR2131951 Preview 4261751
SRR2131952 SRR2131952 Preview 2918047
SRR2131953 SRR2131953 Preview 2549785
SRR2131954 SRR2131954 Preview 4008354
SRR2131955 SRR2131955 Preview 2617397
SRR2131956 SRR2131956 Preview 1657929
SRR2131957 SRR2131957 Preview 2425986
SRR2131959 SRR2131959 Preview 1036737
SRR2131960 SRR2131960 Preview 1796216
SRR2131961 SRR2131961 Preview 1547969
SRR2131962 SRR2131962 Preview 1957092
SRR2131963 SRR2131963 Preview 829792
SRR2131964 SRR2131964 Preview 656089
SRR2131965 SRR2131965 Preview 1215161
SRR2131966 SRR2131966 Preview 2017647
SRR2131967 SRR2131967 Preview 1626867
SRR2131968 SRR2131968 Preview 3279106
SRR2131969 SRR2131969 Preview 3380628
SRR2131970 SRR2131970 Preview 3543562
SRR2131971 SRR2131971 Preview 3449816
SRR2131972 SRR2131972 Preview 3148328
SRR2131973 SRR2131973 Preview 2355552
SRR2131974 SRR2131974 Preview 3362488
SRR2131975 SRR2131975 Preview 2557608
SRR2131976 SRR2131976 Preview 4409034
SRR2131977 SRR2131977 Preview 3231487
SRR2131978 SRR2131978 Preview 4332079
SRR2131979 SRR2131979 Preview 4212945
SRR2131980 SRR2131980 Preview 3823248
SRR2131981 SRR2131981 Preview 4144216
SRR2131982 SRR2131982 Preview 3804135
SRR2131983 SRR2131983 Preview 1955307
SRR2131984 SRR2131984 Preview 1617442
SRR2131985 SRR2131985 Preview 3487460
SRR2131986 SRR2131986 Preview 3507020
SRR2131987 SRR2131987 Preview 3651674
SRR2131988 SRR2131988 Preview 4230433
SRR2131989 SRR2131989 Preview 2954055
SRR2131990 SRR2131990 Preview 4190620
SRR2131991 SRR2131991 Preview 3943209
SRR2131992 SRR2131992 Preview 2975112
SRR2131993 SRR2131993 Preview 4291363
SRR2131994 SRR2131994 Preview 3611628
SRR2131995 SRR2131995 Preview 3015156
SRR2131996 SRR2131996 Preview 1924017
SRR2131997 SRR2131997 Preview 2775542
SRR2131998 SRR2131998 Preview 3153877
SRR2131999 SRR2131999 Preview 3597186
SRR2132000 SRR2132000 Preview 3938206
SRR2132001 SRR2132001 Preview 3241870
SRR2132002 SRR2132002 Preview 3096089
SRR2132003 SRR2132003 Preview 3438492
SRR2132004 SRR2132004 Preview 1827057
SRR2132005 SRR2132005 Preview 3947609
SRR2132006 SRR2132006 Preview 4112034
SRR2132007 SRR2132007 Preview 3326971
SRR2132008 SRR2132008 Preview 4815213
SRR2132009 SRR2132009 Preview 2830360
SRR2132010 SRR2132010 Preview 4304596
SRR2132011 SRR2132011 Preview 3555711
SRR2132012 SRR2132012 Preview 4128298
SRR2132013 SRR2132013 Preview 5067517
SRR2132014 SRR2132014 Preview 4410869
SRR2132016 SRR2132016 Preview 4316056
SRR3710551_1 SRR3710551 Preview 2584178
SRR3710551_2 SRR3710551 Preview 2584178
SRR3710552_1 SRR3710552 Preview 2186148
SRR3710552_2 SRR3710552 Preview 2186148
SRR3710553_1 SRR3710553 Preview 3200491
SRR3710553_2 SRR3710553 Preview 3200491
SRR3710554_1 SRR3710554 Preview 2747374
SRR3710554_2 SRR3710554 Preview 2747374
SRR3710555_1 SRR3710555 Preview 2832837
SRR3710555_2 SRR3710555 Preview 2832837
SRR3710556_1 SRR3710556 Preview 1936235
SRR3710556_2 SRR3710556 Preview 1936235
SRR3710557_1 SRR3710557 Preview 1419379
SRR3710557_2 SRR3710557 Preview 1419379
SRR3710558_1 SRR3710558 Preview 1609938
SRR3710558_2 SRR3710558 Preview 1609938
SRR3710559_1 SRR3710559 Preview 2391684
SRR3710559_2 SRR3710559 Preview 2391684
SRR3710560_1 SRR3710560 Preview 1865531
SRR3710560_2 SRR3710560 Preview 1865531
SRR3710561_1 SRR3710561 Preview 1750449
SRR3710561_2 SRR3710561 Preview 1750449
SRR3710562_1 SRR3710562 Preview 2401456
SRR3710562_2 SRR3710562 Preview 2401456
SRR3710563_1 SRR3710563 Preview 2306387
SRR3710563_2 SRR3710563 Preview 2306387
SRR3710564_1 SRR3710564 Preview 2223897
SRR3710564_2 SRR3710564 Preview 2223897
SRR3710565_1 SRR3710565 Preview 1871216
SRR3710565_2 SRR3710565 Preview 1871216
SRR3710566_1 SRR3710566 Preview 874020
SRR3710566_2 SRR3710566 Preview 874020
SRR3710567_1 SRR3710567 Preview 2598897
SRR3710567_2 SRR3710567 Preview 2598897
SRR3710568_1 SRR3710568 Preview 3503433
SRR3710568_2 SRR3710568 Preview 3503433
SRR3710569_1 SRR3710569 Preview 2076843
SRR3710569_2 SRR3710569 Preview 2076843
SRR3710570_1 SRR3710570 Preview 2234832
SRR3710570_2 SRR3710570 Preview 2234832
SRR3710571_1 SRR3710571 Preview 2087972
SRR3710571_2 SRR3710571 Preview 2087972
SRR3710572_1 SRR3710572 Preview 2885555
SRR3710572_2 SRR3710572 Preview 2885555
SRR3710573_1 SRR3710573 Preview 2711630
SRR3710573_2 SRR3710573 Preview 2711630
SRR3710574_1 SRR3710574 Preview 2530075
SRR3710574_2 SRR3710574 Preview 2530075
SRR3710575_1 SRR3710575 Preview 2806631
SRR3710575_2 SRR3710575 Preview 2806631
SRR3710576_1 SRR3710576 Preview 1766370
SRR3710576_2 SRR3710576 Preview 1766370
SRR3710577_1 SRR3710577 Preview 2175408
SRR3710577_2 SRR3710577 Preview 2175408
SRR3710578_1 SRR3710578 Preview 2727140
SRR3710578_2 SRR3710578 Preview 2727140
SRR3710579_1 SRR3710579 Preview 2419975
SRR3710579_2 SRR3710579 Preview 2419975
SRR3710580_1 SRR3710580 Preview 3324112
SRR3710580_2 SRR3710580 Preview 3324112
SRR3710581_1 SRR3710581 Preview 2072220
SRR3710581_2 SRR3710581 Preview 2072220
SRR3710582_1 SRR3710582 Preview 1707833
SRR3710582_2 SRR3710582 Preview 1707833
SRR3710583_1 SRR3710583 Preview 1644166
SRR3710583_2 SRR3710583 Preview 1644166
SRR3710584_1 SRR3710584 Preview 1393790
SRR3710584_2 SRR3710584 Preview 1393790
SRR3710585_1 SRR3710585 Preview 1608407
SRR3710585_2 SRR3710585 Preview 1608407
SRR3710586_1 SRR3710586 Preview 2053755
SRR3710586_2 SRR3710586 Preview 2053755
SRR3710587_1 SRR3710587 Preview 2620937
SRR3710587_2 SRR3710587 Preview 2620937
SRR3710588_1 SRR3710588 Preview 2021085
SRR3710588_2 SRR3710588 Preview 2021085
SRR3710589_1 SRR3710589 Preview 1960106
SRR3710589_2 SRR3710589 Preview 1960106
SRR3710590_1 SRR3710590 Preview 2324776
SRR3710590_2 SRR3710590 Preview 2324776
SRR3710591_1 SRR3710591 Preview 2261873
SRR3710591_2 SRR3710591 Preview 2261873
SRR3710592_1 SRR3710592 Preview 2135348
SRR3710592_2 SRR3710592 Preview 2135348
SRR3710593_1 SRR3710593 Preview 2491374
SRR3710593_2 SRR3710593 Preview 2491374
SRR3710594_1 SRR3710594 Preview 1817276
SRR3710594_2 SRR3710594 Preview 1817276
SRR3710595_1 SRR3710595 Preview 1613488
SRR3710595_2 SRR3710595 Preview 1613488
SRR3710596_1 SRR3710596 Preview 1931970
SRR3710596_2 SRR3710596 Preview 1931970
SRR3710597_1 SRR3710597 Preview 1847898
SRR3710597_2 SRR3710597 Preview 1847898

Organism : Mus musculus

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File Size : 289M

Mouse Cell Data

Image Currently Unavailable
tSNE image.
Image Currently Unavailable
PCA image.
Image Currently Unavailable
Gene Body Coverage image.

Data Resources


Organism Run Metadata Link Data Repository Link Pubmed Record Link Author Provided Files DAVID Annotation Chart Link DAVID Annotation Table Link Gene Body Coverage Matrix Link PCA Matrix Link Krona Plot Img Link Unmapped Reads Link Expression Correlation
Mus musculus