SCPortalen


Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation.


Differentiation of metazoan cells requires execution of different gene expression programs but recent single-cell transcriptome profiling has revealed considerable variation within cells of seeming identical phenotype. This brings into question the relationship between transcriptome states and cell phenotypes. Additionally, single-cell transcriptomics presents unique analysis challenges that need to be addressed to answer this question. We present high quality deep read-depth single-cell RNA sequencing for 91 cells from five mouse tissues and 18 cells from two rat tissues, along with 30 control samples of bulk RNA diluted to single-cell levels. We find that transcriptomes differ globally across tissues with regard to the number of genes expressed, the average expression patterns, and within-cell-type variation patterns. We develop methods to filter genes for reliable quantification and to calibrate biological variation. All cell types include genes with high variability in expression, in a tissue-specific manner. We also find evidence that single-cell variability of neuronal genes in mice is correlated with that in rats consistent with the hypothesis that levels of variation may be conserved. Single-cell RNA-sequencing data provide a unique view of transcriptome function. However, careful analysis is required in order to use single-cell RNA-sequencing measurements for this purpose. Technical variation must be considered in single-cell RNA-sequencing studies of expression variation. For a subset of genes, biological variability within each cell type appears to be regulated in order to perform dynamic functions, rather than solely molecular noise.

GSE56638 Samples



Cell Metadata and BAM Files

Bulk Download

BAM Files Run Accession Number Sample Accession Number Organism Organ/Tissue Dev. Stage Cell Type Sequencer Protocol Assay Type Library Layout Ontology Term Cell Cycle Phase
SRR1233026 SAMN02725900 Mus musculus Heart Adult Adipocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0003062 [interscapular brown adipose tissue] G2
SRR1233027 SAMN02725913 Mus musculus Heart Adult Adipocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0003062 [interscapular brown adipose tissue] S
SRR1233028 SAMN02725906 Mus musculus Heart Adult Adipocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0003062 [interscapular brown adipose tissue] M.G1
SRR1233029 SAMN02725903 Mus musculus Heart Adult Adipocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0003062 [interscapular brown adipose tissue] G1.S
SRR1233030 SAMN02725915 Mus musculus Heart Adult Adipocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0003062 [interscapular brown adipose tissue] S
SRR1233031 SAMN02725907 Mus musculus Heart Adult Adipocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0003062 [interscapular brown adipose tissue] M.G1
SRR1233032 SAMN02725905 Mus musculus Heart Adult Adipocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0003062 [interscapular brown adipose tissue] M.G1
SRR1233033 SAMN02725917 Mus musculus Heart Adult Adipocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0003062 [interscapular brown adipose tissue] G1.S
SRR1233034 SAMN02725908 Mus musculus Heart Adult Adipocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0003062 [interscapular brown adipose tissue] S
SRR1233035 SAMN02725911 Mus musculus Heart Adult Adipocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0003062 [interscapular brown adipose tissue] M.G1
SRR1233036 SAMN02725919 Mus musculus Heart Adult Adipocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0003062 [interscapular brown adipose tissue] G1.S
SRR1233037 SAMN02725910 Mus musculus Heart Adult Adipocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0003062 [interscapular brown adipose tissue] G2.M
SRR1233038 SAMN02725914 Mus musculus Heart Adult Adipocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0003062 [interscapular brown adipose tissue] G2
SRR1233039 SAMN02725920 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G2.M
SRR1233040 SAMN02725912 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G2
SRR1233041 SAMN02725921 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G2
SRR1233042 SAMN02725923 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G1.S
SRR1233043 SAMN02725916 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G2.M
SRR1233044 SAMN02725926 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G1.S
SRR1233045 SAMN02725924 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G2.M
SRR1233046 SAMN02725918 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G2
SRR1233047 SAMN02725927 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] S
SRR1233048 SAMN02725925 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G2.M
SRR1233049 SAMN02725922 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G2.M
SRR1233050 SAMN02725932 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G2
SRR1233051 SAMN02725936 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G2
SRR1233052 SAMN02725930 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G2
SRR1233053 SAMN02725931 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] M.G1
SRR1233054 SAMN02725938 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G2.M
SRR1233055 SAMN02725933 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G1.S
SRR1233056 SAMN02725929 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] M.G1
SRR1233057 SAMN02725928 Mus musculus Heart Adult Cardiomyocyte Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0002495 [fetal cardiomyocyte] G2
SRR1233058 SAMN02725935 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2.M
SRR1233059 SAMN02725940 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2.M
SRR1233060 SAMN02725934 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2.M
SRR1233061 SAMN02725937 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G1.S
SRR1233062 SAMN02725939 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2
SRR1233063 SAMN02725944 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2.M
SRR1233064 SAMN02725942 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2.M
SRR1233065 SAMN02725941 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2.M
SRR1233066 SAMN02725946 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2
SRR1233067 SAMN02725943 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2.M
SRR1233068 SAMN02725945 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2.M
SRR1233069 SAMN02725951 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2
SRR1233070 SAMN02725949 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2.M
SRR1233071 SAMN02725947 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2.M
SRR1233072 SAMN02725955 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2.M
SRR1233073 SAMN02725950 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2.M
SRR1233074 SAMN02725948 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2
SRR1233075 SAMN02725958 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2.M
SRR1233076 SAMN02725952 Mus musculus Brain (Hippocampus) Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:0000598 [pyramidal neuron] G2.M
SRR1233077 SAMN02725954 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G2
SRR1233078 SAMN02725959 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G2.M
SRR1233079 SAMN02725953 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G2.M
SRR1233080 SAMN02725956 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G2
SRR1233081 SAMN02725960 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] M.G1
SRR1233082 SAMN02725957 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G2
SRR1233083 SAMN02725961 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] S
SRR1233084 SAMN02725962 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G2
SRR1233085 SAMN02725846 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G1.S
SRR1233086 SAMN02725844 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G2
SRR1233087 SAMN02725854 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G2
SRR1233088 SAMN02725847 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G2
SRR1233089 SAMN02725845 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G2
SRR1233090 SAMN02725855 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G2
SRR1233091 SAMN02725848 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G2
SRR1233092 SAMN02725850 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G2
SRR1233093 SAMN02725859 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] S
SRR1233094 SAMN02725851 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] S
SRR1233095 SAMN02725849 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G2.M
SRR1233096 SAMN02725858 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G1.S
SRR1233097 SAMN02725856 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] G2.M
SRR1233098 SAMN02725853 Mus musculus Brain (Forebrain) Post natal day 60 5-HT neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End FMA:68462 [Dorsal raphe nucleus] S
SRR1233099 SAMN02725867 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2.M
SRR1233100 SAMN02725857 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2.M
SRR1233101 SAMN02725852 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2.M
SRR1233102 SAMN02725871 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2.M
SRR1233103 SAMN02725861 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2
SRR1233104 SAMN02725860 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2.M
SRR1233105 SAMN02725866 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2
SRR1233106 SAMN02725864 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2
SRR1233107 SAMN02725863 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2
SRR1233108 SAMN02725873 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2.M
SRR1233109 SAMN02725862 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2.M
SRR1233110 SAMN02725865 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2
SRR1233111 SAMN02725879 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2.M
SRR1233112 SAMN02725868 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2
SRR1233113 SAMN02725869 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2.M
SRR1233114 SAMN02725874 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2
SRR1233115 SAMN02725870 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2
SRR1233116 SAMN02725876 Mus musculus Cortex Embryonic day 18 Pyramidal neuron Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End CL:1001571 [hhippocampal pyramidal neuron] G2
SRR1233117 SAMN02725878 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233118 SAMN02725872 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233119 SAMN02725880 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233120 SAMN02725883 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233121 SAMN02725877 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233122 SAMN02725875 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233123 SAMN02725881 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233124 SAMN02725882 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233125 SAMN02725885 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233126 SAMN02725887 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233127 SAMN02725884 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233128 SAMN02725889 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233129 SAMN02725886 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233130 SAMN02725888 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233131 SAMN02725891 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233132 SAMN02725890 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233133 SAMN02725893 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR1233134 SAMN02725892 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR2032135 SAMN03700877 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] S
SRR2032136 SAMN03700878 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] S
SRR2032137 SAMN03700879 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] S
SRR2032138 SAMN03700880 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] S
SRR2032139 SAMN03700881 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] S
SRR2032140 SAMN03700882 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] S
SRR2032141 SAMN03700883 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] S
SRR2032142 SAMN03700884 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] S
SRR2032143 SAMN03700885 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1
SRR2032144 SAMN03700886 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] S
SRR2032145 SAMN03700887 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] S
SRR2032146 SAMN03700888 Mus musculus Heart Adult Population Illumina HiSeq 2000 / HiSeq 2500 TruSeq RNA-Seq Paired-End MA:0000072 [heart] M.G1

FASTQC Report



FASTQC File ID Cell Accession Number FASTQC Report Link No. Sequence Tags
SRR1233026_1 SRR1233026 Preview 114736695
SRR1233026_2 SRR1233026 Preview 114736695
SRR1233027_1 SRR1233027 Preview 85591324
SRR1233027_2 SRR1233027 Preview 85591324
SRR1233028_1 SRR1233028 Preview 96514469
SRR1233028_2 SRR1233028 Preview 96514469
SRR1233029_1 SRR1233029 Preview 53434557
SRR1233029_2 SRR1233029 Preview 53434557
SRR1233030_1 SRR1233030 Preview 44704672
SRR1233030_2 SRR1233030 Preview 44704672
SRR1233031_1 SRR1233031 Preview 87980627
SRR1233031_2 SRR1233031 Preview 87980627
SRR1233032_1 SRR1233032 Preview 71406128
SRR1233032_2 SRR1233032 Preview 71406128
SRR1233033_1 SRR1233033 Preview 60010497
SRR1233033_2 SRR1233033 Preview 60010497
SRR1233034_1 SRR1233034 Preview 47342719
SRR1233034_2 SRR1233034 Preview 47342719
SRR1233035_1 SRR1233035 Preview 73746655
SRR1233035_2 SRR1233035 Preview 73746655
SRR1233036_1 SRR1233036 Preview 26865909
SRR1233036_2 SRR1233036 Preview 26865909
SRR1233037_1 SRR1233037 Preview 64827754
SRR1233037_2 SRR1233037 Preview 64827754
SRR1233038_1 SRR1233038 Preview 50899296
SRR1233038_2 SRR1233038 Preview 50899296
SRR1233039_1 SRR1233039 Preview 80126331
SRR1233039_2 SRR1233039 Preview 80126331
SRR1233040_1 SRR1233040 Preview 81607113
SRR1233040_2 SRR1233040 Preview 81607113
SRR1233041_1 SRR1233041 Preview 64079233
SRR1233041_2 SRR1233041 Preview 64079233
SRR1233042_1 SRR1233042 Preview 51841968
SRR1233042_2 SRR1233042 Preview 51841968
SRR1233043_1 SRR1233043 Preview 50163674
SRR1233043_2 SRR1233043 Preview 50163674
SRR1233044_1 SRR1233044 Preview 53018484
SRR1233044_2 SRR1233044 Preview 53018484
SRR1233045_1 SRR1233045 Preview 47186955
SRR1233045_2 SRR1233045 Preview 47186955
SRR1233046_1 SRR1233046 Preview 38869220
SRR1233046_2 SRR1233046 Preview 38869220
SRR1233047_1 SRR1233047 Preview 47295056
SRR1233047_2 SRR1233047 Preview 47295056
SRR1233048_1 SRR1233048 Preview 38114768
SRR1233048_2 SRR1233048 Preview 38114768
SRR1233049_1 SRR1233049 Preview 28435111
SRR1233049_2 SRR1233049 Preview 28435111
SRR1233050_1 SRR1233050 Preview 41815286
SRR1233050_2 SRR1233050 Preview 41815286
SRR1233051_1 SRR1233051 Preview 26247980
SRR1233051_2 SRR1233051 Preview 26247980
SRR1233052_1 SRR1233052 Preview 34937512
SRR1233052_2 SRR1233052 Preview 34937512
SRR1233053_1 SRR1233053 Preview 33176924
SRR1233053_2 SRR1233053 Preview 33176924
SRR1233054_1 SRR1233054 Preview 25779893
SRR1233054_2 SRR1233054 Preview 25779893
SRR1233055_1 SRR1233055 Preview 35889287
SRR1233055_2 SRR1233055 Preview 35889287
SRR1233056_1 SRR1233056 Preview 27895744
SRR1233056_2 SRR1233056 Preview 27895744
SRR1233057_1 SRR1233057 Preview 18133897
SRR1233057_2 SRR1233057 Preview 18133897
SRR1233058_1 SRR1233058 Preview 67436362
SRR1233058_2 SRR1233058 Preview 67436362
SRR1233059_1 SRR1233059 Preview 79331550
SRR1233059_2 SRR1233059 Preview 79331550
SRR1233060_1 SRR1233060 Preview 51912944
SRR1233060_2 SRR1233060 Preview 51912944
SRR1233061_1 SRR1233061 Preview 67554522
SRR1233061_2 SRR1233061 Preview 67554522
SRR1233062_1 SRR1233062 Preview 70004595
SRR1233062_2 SRR1233062 Preview 70004595
SRR1233063_1 SRR1233063 Preview 73939087
SRR1233063_2 SRR1233063 Preview 73939087
SRR1233064_1 SRR1233064 Preview 61874740
SRR1233064_2 SRR1233064 Preview 61874740
SRR1233065_1 SRR1233065 Preview 66320657
SRR1233065_2 SRR1233065 Preview 66320657
SRR1233066_1 SRR1233066 Preview 67311696
SRR1233066_2 SRR1233066 Preview 67311696
SRR1233067_1 SRR1233067 Preview 78401973
SRR1233067_2 SRR1233067 Preview 78401973
SRR1233068_1 SRR1233068 Preview 44641464
SRR1233068_2 SRR1233068 Preview 44641464
SRR1233069_1 SRR1233069 Preview 97937573
SRR1233069_2 SRR1233069 Preview 97937573
SRR1233070_1 SRR1233070 Preview 60674279
SRR1233070_2 SRR1233070 Preview 60674279
SRR1233071_1 SRR1233071 Preview 37114114
SRR1233071_2 SRR1233071 Preview 37114114
SRR1233072_1 SRR1233072 Preview 75016355
SRR1233072_2 SRR1233072 Preview 75016355
SRR1233073_1 SRR1233073 Preview 44097160
SRR1233073_2 SRR1233073 Preview 44097160
SRR1233074_1 SRR1233074 Preview 94447685
SRR1233074_2 SRR1233074 Preview 94447685
SRR1233075_1 SRR1233075 Preview 37709170
SRR1233075_2 SRR1233075 Preview 37709170
SRR1233076_1 SRR1233076 Preview 36150104
SRR1233076_2 SRR1233076 Preview 36150104
SRR1233077_1 SRR1233077 Preview 111879077
SRR1233077_2 SRR1233077 Preview 111879077
SRR1233078_1 SRR1233078 Preview 112483704
SRR1233078_2 SRR1233078 Preview 112483704
SRR1233079_1 SRR1233079 Preview 115613493
SRR1233079_2 SRR1233079 Preview 115613493
SRR1233080_1 SRR1233080 Preview 110212931
SRR1233080_2 SRR1233080 Preview 110212931
SRR1233081_1 SRR1233081 Preview 113110132
SRR1233081_2 SRR1233081 Preview 113110132
SRR1233082_1 SRR1233082 Preview 57259584
SRR1233082_2 SRR1233082 Preview 57259584
SRR1233083_1 SRR1233083 Preview 64137862
SRR1233083_2 SRR1233083 Preview 64137862
SRR1233084_1 SRR1233084 Preview 39906606
SRR1233084_2 SRR1233084 Preview 39906606
SRR1233085_1 SRR1233085 Preview 42768573
SRR1233085_2 SRR1233085 Preview 42768573
SRR1233086_1 SRR1233086 Preview 50948328
SRR1233086_2 SRR1233086 Preview 50948328
SRR1233087_1 SRR1233087 Preview 35628685
SRR1233087_2 SRR1233087 Preview 35628685
SRR1233088_1 SRR1233088 Preview 38719552
SRR1233088_2 SRR1233088 Preview 38719552
SRR1233089_1 SRR1233089 Preview 33538571
SRR1233089_2 SRR1233089 Preview 33538571
SRR1233090_1 SRR1233090 Preview 39679370
SRR1233090_2 SRR1233090 Preview 39679370
SRR1233091_1 SRR1233091 Preview 51304031
SRR1233091_2 SRR1233091 Preview 51304031
SRR1233092_1 SRR1233092 Preview 34455644
SRR1233092_2 SRR1233092 Preview 34455644
SRR1233093_1 SRR1233093 Preview 45001521
SRR1233093_2 SRR1233093 Preview 45001521
SRR1233094_1 SRR1233094 Preview 56215129
SRR1233094_2 SRR1233094 Preview 56215129
SRR1233095_1 SRR1233095 Preview 36829671
SRR1233095_2 SRR1233095 Preview 36829671
SRR1233096_1 SRR1233096 Preview 58254398
SRR1233096_2 SRR1233096 Preview 58254398
SRR1233097_1 SRR1233097 Preview 44473598
SRR1233097_2 SRR1233097 Preview 44473598
SRR1233098_1 SRR1233098 Preview 43920645
SRR1233098_2 SRR1233098 Preview 43920645
SRR1233099_1 SRR1233099 Preview 99735010
SRR1233099_2 SRR1233099 Preview 99735010
SRR1233100_1 SRR1233100 Preview 65027818
SRR1233100_2 SRR1233100 Preview 65027818
SRR1233101_1 SRR1233101 Preview 57353778
SRR1233101_2 SRR1233101 Preview 57353778
SRR1233102_1 SRR1233102 Preview 74709628
SRR1233102_2 SRR1233102 Preview 74709628
SRR1233103_1 SRR1233103 Preview 46727462
SRR1233103_2 SRR1233103 Preview 46727462
SRR1233104_1 SRR1233104 Preview 76007435
SRR1233104_2 SRR1233104 Preview 76007435
SRR1233105_1 SRR1233105 Preview 25975846
SRR1233105_2 SRR1233105 Preview 25975846
SRR1233106_1 SRR1233106 Preview 44661688
SRR1233106_2 SRR1233106 Preview 44661688
SRR1233107_1 SRR1233107 Preview 72820238
SRR1233107_2 SRR1233107 Preview 72820238
SRR1233108_1 SRR1233108 Preview 66292143
SRR1233108_2 SRR1233108 Preview 66292143
SRR1233109_1 SRR1233109 Preview 38585565
SRR1233109_2 SRR1233109 Preview 38585565
SRR1233110_1 SRR1233110 Preview 70259079
SRR1233110_2 SRR1233110 Preview 70259079
SRR1233111_1 SRR1233111 Preview 40085961
SRR1233111_2 SRR1233111 Preview 40085961
SRR1233112_1 SRR1233112 Preview 68567500
SRR1233112_2 SRR1233112 Preview 68567500
SRR1233113_1 SRR1233113 Preview 72709612
SRR1233113_2 SRR1233113 Preview 72709612
SRR1233114_1 SRR1233114 Preview 15073421
SRR1233114_2 SRR1233114 Preview 15073421
SRR1233115_1 SRR1233115 Preview 31245237
SRR1233115_2 SRR1233115 Preview 31245237
SRR1233116_1 SRR1233116 Preview 96592502
SRR1233116_2 SRR1233116 Preview 96592502
SRR1233117_1 SRR1233117 Preview 21516238
SRR1233117_2 SRR1233117 Preview 21516238
SRR1233118_1 SRR1233118 Preview 34429118
SRR1233118_2 SRR1233118 Preview 34429118
SRR1233119_1 SRR1233119 Preview 30351850
SRR1233119_2 SRR1233119 Preview 30351850
SRR1233120_1 SRR1233120 Preview 45501957
SRR1233120_2 SRR1233120 Preview 45501957
SRR1233121_1 SRR1233121 Preview 15595784
SRR1233121_2 SRR1233121 Preview 15595784
SRR1233122_1 SRR1233122 Preview 31499298
SRR1233122_2 SRR1233122 Preview 31499298
SRR1233123_1 SRR1233123 Preview 42115946
SRR1233123_2 SRR1233123 Preview 42115946
SRR1233124_1 SRR1233124 Preview 35209504
SRR1233124_2 SRR1233124 Preview 35209504
SRR1233125_1 SRR1233125 Preview 43410620
SRR1233125_2 SRR1233125 Preview 43410620
SRR1233126_1 SRR1233126 Preview 16803769
SRR1233126_2 SRR1233126 Preview 16803769
SRR1233127_1 SRR1233127 Preview 29655924
SRR1233127_2 SRR1233127 Preview 29655924
SRR1233128_1 SRR1233128 Preview 31564515
SRR1233128_2 SRR1233128 Preview 31564515
SRR1233129_1 SRR1233129 Preview 18125858
SRR1233129_2 SRR1233129 Preview 18125858
SRR1233130_1 SRR1233130 Preview 34297129
SRR1233130_2 SRR1233130 Preview 34297129
SRR1233131_1 SRR1233131 Preview 50297435
SRR1233131_2 SRR1233131 Preview 50297435
SRR1233132_1 SRR1233132 Preview 32625056
SRR1233132_2 SRR1233132 Preview 32625056
SRR1233133_1 SRR1233133 Preview 24365205
SRR1233133_2 SRR1233133 Preview 24365205
SRR1233134_1 SRR1233134 Preview 14414651
SRR1233134_2 SRR1233134 Preview 14414651
SRR2032135_1 SRR2032135 Preview 31006692
SRR2032135_2 SRR2032135 Preview 31006692
SRR2032136_1 SRR2032136 Preview 29784394
SRR2032136_2 SRR2032136 Preview 29784394
SRR2032137_1 SRR2032137 Preview 21458618
SRR2032137_2 SRR2032137 Preview 21458618
SRR2032138_1 SRR2032138 Preview 31711279
SRR2032138_2 SRR2032138 Preview 31711279
SRR2032139_1 SRR2032139 Preview 34749897
SRR2032139_2 SRR2032139 Preview 34749897
SRR2032140_1 SRR2032140 Preview 30508921
SRR2032140_2 SRR2032140 Preview 30508921
SRR2032141_1 SRR2032141 Preview 32704466
SRR2032141_2 SRR2032141 Preview 32704466
SRR2032142_1 SRR2032142 Preview 30225663
SRR2032142_2 SRR2032142 Preview 30225663
SRR2032143_1 SRR2032143 Preview 25458372
SRR2032143_2 SRR2032143 Preview 25458372
SRR2032144_1 SRR2032144 Preview 31512485
SRR2032144_2 SRR2032144 Preview 31512485
SRR2032145_1 SRR2032145 Preview 29550268
SRR2032145_2 SRR2032145 Preview 29550268
SRR2032146_1 SRR2032146 Preview 42469573
SRR2032146_2 SRR2032146 Preview 42469573

Organism : Mus musculus

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File Size : 264M

Mouse Cell Data

Image Currently Unavailable
tSNE image.
Image Currently Unavailable
PCA image.
Image Currently Unavailable
Gene Body Coverage image.

Data Resources


Organism Run Metadata Link Data Repository Link Pubmed Record Link Author Provided Files DAVID Annotation Chart Link DAVID Annotation Table Link Gene Body Coverage Matrix Link PCA Matrix Link Krona Plot Img Link Unmapped Reads Link Expression Correlation
Mus musculus