SCPortalen


Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos.


Circular RNAs (circRNAs) are a new class of non-polyadenylated non-coding RNAs that may play important roles in many biological processes. Here we develop a single-cell universal poly(A)-independent RNA sequencing (SUPeR-seq) method to sequence both polyadenylated and non-polyadenylated RNAs from individual cells. This method exhibits robust sensitivity, precision and accuracy. We discover 2891 circRNAs and 913 novel linear transcripts in mouse preimplantation embryos and further analyze the abundance of circRNAs along development, the function of enriched genes, and sequence features of circRNAs. Our work is key to deciphering regulation mechanisms of circRNAs during mammalian early embryonic development.

GSE53386 Samples



Cell Metadata and BAM Files

Bulk Download

BAM Files Run Accession Number Sample Accession Number Organism Organ/Tissue Dev. Stage Cell Type Sequencer Protocol Assay Type Library Layout Ontology Term Cell Cycle Phase
SRR1051260 SAMN02460642 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR1051261 SAMN02460640 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] S
SRR1051262 SAMN02460641 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR1051263 SAMN02460643 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR1051264 SAMN02460644 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR1051265 SAMN02460645 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] S
SRR1051266 SAMN02460647 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR1051267 SAMN02460651 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR1051268 SAMN02460652 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR1051269 SAMN02460650 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR1051270 SAMN02460646 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR1051271 SAMN02460648 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR1051272 SAMN02460649 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR1051273 SAMN02460653 Mus musculus Embryo Oocyte stage Oocyte Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000023[oocyte] G2.M
SRR1051274 SAMN02460654 Mus musculus Embryo Oocyte stage Oocyte Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000023[oocyte] G2.M
SRR1051275 SAMN02460657 Mus musculus Embryo Oocyte stage Oocyte Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000023[oocyte] G2.M
SRR1051276 SAMN02460658 Mus musculus Embryo Oocyte stage Oocyte Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000023[oocyte] G2.M
SRR1051277 SAMN02460655 Mus musculus Embryo Oocyte stage Oocyte Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000023[oocyte] G2.M
SRR1051278 SAMN02460656 Mus musculus Embryo Zygote stage Zygote Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000365[zygote] G2.M
SRR1051279 SAMN02460659 Mus musculus Embryo Zygote stage Zygote Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000365[zygote] G2.M
SRR1051280 SAMN02460661 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G2.M
SRR1051281 SAMN02460662 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G2.M
SRR1051282 SAMN02460664 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G1.S
SRR1051284 SAMN02460663 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G2
SRR1051285 SAMN02460665 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G1.S
SRR1051288 SAMN02460666 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G2.M
SRR1051289 SAMN02460667 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G2.M
SRR1051290 SAMN02460669 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G2.M
SRR1051291 SAMN02460668 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G2.M
SRR1051292 SAMN02460672 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 M.G1
SRR1051293 SAMN02460673 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G2
SRR1051294 SAMN02460674 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G2
SRR1051295 SAMN02460675 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G1.S
SRR1051296 SAMN02460680 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G2
SRR1051297 SAMN02460676 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G1.S
SRR1051298 SAMN02460681 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G1.S
SRR1051299 SAMN02460678 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G1.S
SRR1051300 SAMN02460677 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G1.S
SRR1051301 SAMN02460679 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G1.S
SRR1051302 SAMN02460682 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR1104743 SAMN02460639 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] S
SRR1562283 SAMN03014934 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G2.M
SRR1562284 SAMN03014935 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G2.M
SRR1562285 SAMN03014936 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G2.M
SRR1562286 SAMN03014937 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G2.M
SRR1562287 SAMN03014938 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 S
SRR1567913 SAMN03018600 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 S
SRR1567914 SAMN03018601 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 S
SRR1567915 SAMN03018602 Homo sapiens Kidney Embryo HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 S
SRR1567916 SAMN03018603 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G1.S
SRR1567917 SAMN03018604 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G2.M
SRR1567918 SAMN03018605 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G1.S
SRR1567919 SAMN03018606 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G1.S
SRR1567920 SAMN03018607 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G1.S
SRR1567921 SAMN03018608 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G1.S
SRR1567922 SAMN03018609 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 M.G1
SRR1567923 SAMN03018610 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 S
SRR1567924 SAMN03018611 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 S
SRR1567925 SAMN03018612 Mus musculus Embryo Blastocyst stage Blastocyst Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End UBERON:0000358 [blastocyst] M.G1
SRR1567926 SAMN03018613 Mus musculus Embryo Blastocyst stage Blastocyst Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End UBERON:0000358 [blastocyst] M.G1
SRR1567927 SAMN03018614 Mus musculus Embryo Blastocyst stage Blastocyst Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End UBERON:0000358 [blastocyst] M.G1
SRR1567928 SAMN03018615 Mus musculus Embryo Blastocyst stage Blastocyst Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End UBERON:0000358 [blastocyst] S
SRR1567929 SAMN03018616 Mus musculus Embryo Blastocyst stage Blastocyst Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End UBERON:0000358 [blastocyst] M.G1
SRR1567930 SAMN03018617 Mus musculus Embryo Blastocyst stage Blastocyst Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End UBERON:0000358 [blastocyst] S
SRR1567931 SAMN03018618 Mus musculus Embryo Morula stage Morula Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000360 [morula cell] S
SRR1567932 SAMN03018619 Mus musculus Embryo Morula stage Morula Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000360 [morula cell] M.G1
SRR1567933 SAMN03018593 Mus musculus Embryo Morula stage Morula Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000360 [morula cell] M.G1
SRR1567934 SAMN03018594 Mus musculus Embryo Blastocyst stage Blastocyst Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End UBERON:0000358 [blastocyst] M.G1
SRR1567935 SAMN03018595 Mus musculus Embryo Blastocyst stage Blastocyst Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End UBERON:0000358 [blastocyst] M.G1
SRR1567936 SAMN03018596 Mus musculus Embryo Blastocyst stage Blastocyst Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End UBERON:0000358 [blastocyst] S
SRR1567937 SAMN03018597 Mus musculus Embryo Zygote stage Zygote Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000365[zygote] G2
SRR1567938 SAMN03018598 Mus musculus Embryo Zygote stage Zygote Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000365[zygote] G2
SRR1567939 SAMN03018599 Mus musculus Embryo Zygote stage Zygote Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000365[zygote] G2
SRR2048235 SAMN03757408 Mus musculus Embryo Oocyte stage Oocyte Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000023[oocyte] G2
SRR2048236 SAMN03757409 Mus musculus Embryo Oocyte stage Oocyte Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000023[oocyte] G2
SRR2048237 SAMN03757410 Mus musculus Embryo Oocyte stage Oocyte Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000023[oocyte] G2
SRR2048238 SAMN03757411 Mus musculus Embryo Oocyte stage Oocyte Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000023[oocyte] G2
SRR2048239 SAMN03757412 Mus musculus Embryo Zygote stage Zygote Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000365[zygote] G2.M
SRR2048240 SAMN03757413 Mus musculus Embryo Zygote stage Zygote Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000365[zygote] G2.M
SRR2048241 SAMN03757415 Mus musculus Embryo Zygote stage Zygote Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000365[zygote] S
SRR2048242 SAMN03757416 Mus musculus Embryo Zygote stage Zygote Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000365[zygote] M.G1
SRR2048243 SAMN03757417 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G1.S
SRR2048244 SAMN03757418 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G1.S
SRR2048245 SAMN03757419 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G2.M
SRR2048246 SAMN03757420 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 G2.M
SRR2048247 SAMN03757421 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 M.G1
SRR2048248 SAMN03757422 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 M.G1
SRR2048249 SAMN03757414 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 M.G1
SRR2048250 SAMN03757423 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 M.G1
SRR2048251 SAMN03757424 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 S
SRR2048252 SAMN03757425 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 S
SRR2048253 SAMN03757426 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 M.G1
SRR2048254 SAMN03757427 Mus musculus Embryo Embryo Embryo Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0005857 M.G1
SRR2048255 SAMN03757428 Mus musculus Embryo Morula stage Morula Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000360 [morula cell] S
SRR2048256 SAMN03757429 Mus musculus Embryo Morula stage Morula Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000360 [morula cell] S
SRR2048258 SAMN03757431 Mus musculus Embryo Morula stage Morula Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End CL:0000360 [morula cell] S
SRR2048259 SAMN03757432 Mus musculus Embryo Blastocyst stage Blastocyst Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End UBERON:0000358 [blastocyst] S
SRR2048260 SAMN03757440 Mus musculus Embryo Blastocyst stage Blastocyst Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End UBERON:0000358 [blastocyst] S
SRR2048261 SAMN03757441 Mus musculus Embryo Blastocyst stage Blastocyst Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End UBERON:0000358 [blastocyst] G2.M
SRR2048262 SAMN03757433 Mus musculus Embryo Blastocyst stage Blastocyst Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End UBERON:0000358 [blastocyst] G2.M
SRR2048263 SAMN03757434 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR2048264 SAMN03757435 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR2048265 SAMN03757436 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR2048266 SAMN03757437 Mus musculus Embryo Embryo mESC Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0003074[mouse ES cell] M.G1
SRR2048267 SAMN03757438 Homo sapiens Kidney Embryo Human HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G1.S
SRR2048268 SAMN03757439 Homo sapiens Kidney Embryo Human HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G2
SRR2048269 SAMN03757442 Homo sapiens Kidney Embryo Human HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 M.G1
SRR2048270 SAMN03757443 Homo sapiens Kidney Embryo Human HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G2
SRR2048271 SAMN03757444 Homo sapiens Kidney Embryo Human HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G2
SRR2048272 SAMN03757445 Homo sapiens Kidney Embryo Human HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G1.S
SRR2048273 SAMN03757446 Homo sapiens Kidney Embryo Human HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 M.G1
SRR2048274 SAMN03757447 Homo sapiens Kidney Embryo Human HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G1.S
SRR2048275 SAMN03757448 Homo sapiens Kidney Embryo Human HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G2
SRR2048276 SAMN03757449 Homo sapiens Kidney Embryo Human HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 G2
SRR2048277 SAMN03757450 Homo sapiens Kidney Embryo Human HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 S
SRR2048278 SAMN03757451 Homo sapiens Kidney Embryo Human HEK293T cell Illumina HiSeq 2000 / HiSeq 2500 SUPeR-Seq RNA-Seq Paired-End EFO:0001184 S

FASTQC Report



FASTQC File ID Cell Accession Number FASTQC Report Link No. Sequence Tags
SRR1051260_1 SRR1051260 Preview 14515202
SRR1051260_2 SRR1051260 Preview 14515202
SRR1051261_1 SRR1051261 Preview 7581462
SRR1051261_2 SRR1051261 Preview 7581462
SRR1051262_1 SRR1051262 Preview 4442880
SRR1051262_2 SRR1051262 Preview 4442880
SRR1051263_1 SRR1051263 Preview 4735940
SRR1051263_2 SRR1051263 Preview 4735940
SRR1051264_1 SRR1051264 Preview 4619548
SRR1051264_2 SRR1051264 Preview 4619548
SRR1051265_1 SRR1051265 Preview 10780618
SRR1051265_2 SRR1051265 Preview 10780618
SRR1051266_1 SRR1051266 Preview 12232916
SRR1051266_2 SRR1051266 Preview 12232916
SRR1051267_1 SRR1051267 Preview 11448379
SRR1051267_2 SRR1051267 Preview 11448379
SRR1051268_1 SRR1051268 Preview 12139190
SRR1051268_2 SRR1051268 Preview 12139190
SRR1051269_1 SRR1051269 Preview 7823080
SRR1051269_2 SRR1051269 Preview 7823080
SRR1051270_1 SRR1051270 Preview 8244706
SRR1051270_2 SRR1051270 Preview 8244706
SRR1051271_1 SRR1051271 Preview 5487538
SRR1051271_2 SRR1051271 Preview 5487538
SRR1051272_1 SRR1051272 Preview 6755160
SRR1051272_2 SRR1051272 Preview 6755160
SRR1051273_1 SRR1051273 Preview 35379903
SRR1051273_2 SRR1051273 Preview 35379903
SRR1051274_1 SRR1051274 Preview 27354912
SRR1051274_2 SRR1051274 Preview 27354912
SRR1051275_1 SRR1051275 Preview 8044059
SRR1051275_2 SRR1051275 Preview 8044059
SRR1051276_1 SRR1051276 Preview 11810273
SRR1051276_2 SRR1051276 Preview 11810273
SRR1051277_1 SRR1051277 Preview 14291925
SRR1051277_2 SRR1051277 Preview 14291925
SRR1051278_1 SRR1051278 Preview 29830305
SRR1051278_2 SRR1051278 Preview 29830305
SRR1051279_1 SRR1051279 Preview 22267358
SRR1051279_2 SRR1051279 Preview 22267358
SRR1051280_1 SRR1051280 Preview 23338766
SRR1051280_2 SRR1051280 Preview 23338766
SRR1051281_1 SRR1051281 Preview 23594202
SRR1051281_2 SRR1051281 Preview 23594202
SRR1051282_1 SRR1051282 Preview 13190722
SRR1051282_2 SRR1051282 Preview 13190722
SRR1051284_1 SRR1051284 Preview 11238556
SRR1051284_2 SRR1051284 Preview 11238556
SRR1051285_1 SRR1051285 Preview 21200161
SRR1051285_2 SRR1051285 Preview 21200161
SRR1051288_1 SRR1051288 Preview 12428335
SRR1051288_2 SRR1051288 Preview 12428335
SRR1051289_1 SRR1051289 Preview 17039080
SRR1051289_2 SRR1051289 Preview 17039080
SRR1051290_1 SRR1051290 Preview 15476735
SRR1051290_2 SRR1051290 Preview 15476735
SRR1051291_1 SRR1051291 Preview 17285507
SRR1051291_2 SRR1051291 Preview 17285507
SRR1051292_1 SRR1051292 Preview 6767745
SRR1051292_2 SRR1051292 Preview 6767745
SRR1051293_1 SRR1051293 Preview 14267472
SRR1051293_2 SRR1051293 Preview 14267472
SRR1051294_1 SRR1051294 Preview 4609469
SRR1051294_2 SRR1051294 Preview 4609469
SRR1051295_1 SRR1051295 Preview 7075247
SRR1051295_2 SRR1051295 Preview 7075247
SRR1051296_1 SRR1051296 Preview 5060738
SRR1051296_2 SRR1051296 Preview 5060738
SRR1051297_1 SRR1051297 Preview 7766403
SRR1051297_2 SRR1051297 Preview 7766403
SRR1051298_1 SRR1051298 Preview 10613950
SRR1051298_2 SRR1051298 Preview 10613950
SRR1051299_1 SRR1051299 Preview 4836029
SRR1051299_2 SRR1051299 Preview 4836029
SRR1051300_1 SRR1051300 Preview 5011656
SRR1051300_2 SRR1051300 Preview 5011656
SRR1051301_1 SRR1051301 Preview 4495062
SRR1051301_2 SRR1051301 Preview 4495062
SRR1051302_1 SRR1051302 Preview 14610788
SRR1051302_2 SRR1051302 Preview 14610788
SRR1104743_1 SRR1104743 Preview 8044279
SRR1104743_2 SRR1104743 Preview 8044279
SRR1562283_1 SRR1562283 Preview 17773859
SRR1562283_2 SRR1562283 Preview 17773859
SRR1562284_1 SRR1562284 Preview 19280661
SRR1562284_2 SRR1562284 Preview 19280661
SRR1562285_1 SRR1562285 Preview 14799567
SRR1562285_2 SRR1562285 Preview 14799567
SRR1562286_1 SRR1562286 Preview 19134975
SRR1562286_2 SRR1562286 Preview 19134975
SRR1562287_1 SRR1562287 Preview 15738995
SRR1562287_2 SRR1562287 Preview 15738995
SRR1567913_1 SRR1567913 Preview 12043456
SRR1567913_2 SRR1567913 Preview 12043456
SRR1567914_1 SRR1567914 Preview 13772022
SRR1567914_2 SRR1567914 Preview 13772022
SRR1567915_1 SRR1567915 Preview 13405316
SRR1567915_2 SRR1567915 Preview 13405316
SRR1567916_1 SRR1567916 Preview 11924409
SRR1567916_2 SRR1567916 Preview 11924409
SRR1567917_1 SRR1567917 Preview 9269223
SRR1567917_2 SRR1567917 Preview 9269223
SRR1567918_1 SRR1567918 Preview 10419658
SRR1567918_2 SRR1567918 Preview 10419658
SRR1567919_1 SRR1567919 Preview 15073754
SRR1567919_2 SRR1567919 Preview 15073754
SRR1567920_1 SRR1567920 Preview 11114600
SRR1567920_2 SRR1567920 Preview 11114600
SRR1567921_1 SRR1567921 Preview 10254676
SRR1567921_2 SRR1567921 Preview 10254676
SRR1567922_1 SRR1567922 Preview 10814346
SRR1567922_2 SRR1567922 Preview 10814346
SRR1567923_1 SRR1567923 Preview 8810491
SRR1567923_2 SRR1567923 Preview 8810491
SRR1567924_1 SRR1567924 Preview 11092000
SRR1567924_2 SRR1567924 Preview 11092000
SRR1567925_1 SRR1567925 Preview 13300876
SRR1567925_2 SRR1567925 Preview 13300876
SRR1567926_1 SRR1567926 Preview 17250146
SRR1567926_2 SRR1567926 Preview 17250146
SRR1567927_1 SRR1567927 Preview 15126640
SRR1567927_2 SRR1567927 Preview 15126640
SRR1567928_1 SRR1567928 Preview 8793233
SRR1567928_2 SRR1567928 Preview 8793233
SRR1567929_1 SRR1567929 Preview 6768803
SRR1567929_2 SRR1567929 Preview 6768803
SRR1567930_1 SRR1567930 Preview 8468945
SRR1567930_2 SRR1567930 Preview 8468945
SRR1567931_1 SRR1567931 Preview 17219797
SRR1567931_2 SRR1567931 Preview 17219797
SRR1567932_1 SRR1567932 Preview 20625042
SRR1567932_2 SRR1567932 Preview 20625042
SRR1567933_1 SRR1567933 Preview 16809518
SRR1567933_2 SRR1567933 Preview 16809518
SRR1567934_1 SRR1567934 Preview 7223526
SRR1567934_2 SRR1567934 Preview 7223526
SRR1567935_1 SRR1567935 Preview 8460082
SRR1567935_2 SRR1567935 Preview 8460082
SRR1567936_1 SRR1567936 Preview 7098967
SRR1567936_2 SRR1567936 Preview 7098967
SRR1567937_1 SRR1567937 Preview 12514508
SRR1567937_2 SRR1567937 Preview 12514508
SRR1567938_1 SRR1567938 Preview 10361752
SRR1567938_2 SRR1567938 Preview 10361752
SRR1567939_1 SRR1567939 Preview 9896580
SRR1567939_2 SRR1567939 Preview 9896580
SRR2048235_1 SRR2048235 Preview 5173292
SRR2048235_2 SRR2048235 Preview 5173292
SRR2048236_1 SRR2048236 Preview 5199427
SRR2048236_2 SRR2048236 Preview 5199427
SRR2048237_1 SRR2048237 Preview 4779221
SRR2048237_2 SRR2048237 Preview 4779221
SRR2048238_1 SRR2048238 Preview 5637428
SRR2048238_2 SRR2048238 Preview 5637428
SRR2048239_1 SRR2048239 Preview 5523912
SRR2048239_2 SRR2048239 Preview 5523912
SRR2048240_1 SRR2048240 Preview 5718241
SRR2048240_2 SRR2048240 Preview 5718241
SRR2048241_1 SRR2048241 Preview 1983330
SRR2048241_2 SRR2048241 Preview 1983330
SRR2048242_1 SRR2048242 Preview 2449111
SRR2048242_2 SRR2048242 Preview 2449111
SRR2048243_1 SRR2048243 Preview 3009936
SRR2048243_2 SRR2048243 Preview 3009936
SRR2048244_1 SRR2048244 Preview 3321790
SRR2048244_2 SRR2048244 Preview 3321790
SRR2048245_1 SRR2048245 Preview 9803685
SRR2048245_2 SRR2048245 Preview 9803685
SRR2048246_1 SRR2048246 Preview 10862499
SRR2048246_2 SRR2048246 Preview 10862499
SRR2048247_1 SRR2048247 Preview 10384367
SRR2048247_2 SRR2048247 Preview 10384367
SRR2048248_1 SRR2048248 Preview 10151377
SRR2048248_2 SRR2048248 Preview 10151377
SRR2048249_1 SRR2048249 Preview 3335923
SRR2048249_2 SRR2048249 Preview 3335923
SRR2048250_1 SRR2048250 Preview 4031247
SRR2048250_2 SRR2048250 Preview 4031247
SRR2048251_1 SRR2048251 Preview 3737001
SRR2048251_2 SRR2048251 Preview 3737001
SRR2048252_1 SRR2048252 Preview 3907180
SRR2048252_2 SRR2048252 Preview 3907180
SRR2048253_1 SRR2048253 Preview 7253279
SRR2048253_2 SRR2048253 Preview 7253279
SRR2048254_1 SRR2048254 Preview 6850826
SRR2048254_2 SRR2048254 Preview 6850826
SRR2048255_1 SRR2048255 Preview 14488867
SRR2048255_2 SRR2048255 Preview 14488867
SRR2048256_1 SRR2048256 Preview 14141595
SRR2048256_2 SRR2048256 Preview 14141595
SRR2048258_1 SRR2048258 Preview 5056826
SRR2048258_2 SRR2048258 Preview 5056826
SRR2048259_1 SRR2048259 Preview 4439606
SRR2048259_2 SRR2048259 Preview 4439606
SRR2048260_1 SRR2048260 Preview 3337225
SRR2048260_2 SRR2048260 Preview 3337225
SRR2048261_1 SRR2048261 Preview 2564456
SRR2048261_2 SRR2048261 Preview 2564456
SRR2048262_1 SRR2048262 Preview 2450952
SRR2048262_2 SRR2048262 Preview 2450952
SRR2048263_1 SRR2048263 Preview 1923274
SRR2048263_2 SRR2048263 Preview 1923274
SRR2048264_1 SRR2048264 Preview 2042748
SRR2048264_2 SRR2048264 Preview 2042748
SRR2048265_1 SRR2048265 Preview 6806677
SRR2048265_2 SRR2048265 Preview 6806677
SRR2048266_1 SRR2048266 Preview 4442212
SRR2048266_2 SRR2048266 Preview 4442212
SRR2048267_1 SRR2048267 Preview 7253597
SRR2048267_2 SRR2048267 Preview 7253597
SRR2048268_1 SRR2048268 Preview 5085140
SRR2048268_2 SRR2048268 Preview 5085140
SRR2048269_1 SRR2048269 Preview 7834313
SRR2048269_2 SRR2048269 Preview 7834313
SRR2048270_1 SRR2048270 Preview 9046652
SRR2048270_2 SRR2048270 Preview 9046652
SRR2048271_1 SRR2048271 Preview 8202091
SRR2048271_2 SRR2048271 Preview 8202091
SRR2048272_1 SRR2048272 Preview 10673276
SRR2048272_2 SRR2048272 Preview 10673276
SRR2048273_1 SRR2048273 Preview 8503863
SRR2048273_2 SRR2048273 Preview 8503863
SRR2048274_1 SRR2048274 Preview 19177401
SRR2048274_2 SRR2048274 Preview 19177401
SRR2048275_1 SRR2048275 Preview 6584975
SRR2048275_2 SRR2048275 Preview 6584975
SRR2048276_1 SRR2048276 Preview 5833619
SRR2048276_2 SRR2048276 Preview 5833619
SRR2048277_1 SRR2048277 Preview 16765309
SRR2048277_2 SRR2048277 Preview 16765309
SRR2048278_1 SRR2048278 Preview 18516247
SRR2048278_2 SRR2048278 Preview 18516247

Organism : Homo sapiens      Download :     File Size : 77M

Organism : Mus musculus      Download :     File Size : 187M

Human Cell Data

Image Currently Unavailable
tSNE image.
Image Currently Unavailable
PCA image.
Image Currently Unavailable
Gene Body Coverage image.

Mouse Cell Data

Image Currently Unavailable
tSNE image.
Image Currently Unavailable
PCA image.
Image Currently Unavailable
Gene Body Coverage image.

Data Resources


Organism Run Metadata Link Data Repository Link Pubmed Record Link Author Provided Files DAVID Annotation Chart Link DAVID Annotation Table Link Gene Body Coverage Matrix Link PCA Matrix Link Krona Plot Img Link Unmapped Reads Link Expression Correlation
Homo sapiens
Mus musculus