SCPortalen


Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.


Genome-wide transcriptome analyses are routinely used to monitor tissue-, disease- and cell type–specific gene expression, but it has been technically challenging to generate expression profiles from single cells. Here we describe a robust mRNA-Seq protocol (Smart-Seq) that is applicable down to single cell levels. Compared with existing methods, Smart-Seq has improved read coverage across transcripts, which enhances detailed analyses of alternative transcript isoforms and identification of single-nucleotide polymorphisms. We determined the sensitivity and quantitative accuracy of Smart-Seq for single-cell transcriptomics by evaluating it on total RNA dilution series. We found that although gene expression estimates from single cells have increased noise, hundreds of differentially expressed genes could be identified using few cells per cell type. Applying Smart-Seq to circulating tumor cells from melanomas, we identified distinct gene expression patterns, including candidate biomarkers for melanoma circulating tumor cells. Our protocol will be useful for addressing fundamental biological problems requiring genome-wide transcriptome profiling in rare cells.

GSE38495 Samples



Cell Metadata and BAM Files

Bulk Download

BAM Files Run Accession Number Sample Accession Number Organism Organ/Tissue Dev. Stage Cell Type Sequencer Protocol Assay Type Library Layout Ontology Term Cell Cycle Phase
SRR522030 SAMN01090472 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G2.M
SRR522031 SAMN01090473 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G2.M
SRR522032 SAMN01090474 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G1.S
SRR522033 SAMN01090475 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G1.S
SRR522034 SAMN01090476 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G2.M
SRR522035 SAMN01090477 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G2.M
SRR522036 SAMN01090478 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G1.S
SRR522037 SAMN01090479 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G1.S
SRR522038 SAMN01090480 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G1.S
SRR522039 SAMN01090481 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G2.M
SRR522040 SAMN01090482 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] M.G1
SRR522041 SAMN01090483 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G1.S
SRR522042 SAMN01090484 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522043 SAMN01090485 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G1.S
SRR522044 SAMN01090486 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522045 SAMN01090487 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] M.G1
SRR522046 SAMN01090488 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] M.G1
SRR522047 SAMN01090489 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G2.M
SRR522048 SAMN01090490 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G1.S
SRR522049 SAMN01090491 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G2.M
SRR522050 SAMN01090492 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G2.M
SRR522051 SAMN01090493 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G2.M
SRR522052 SAMN01090494 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G2.M
SRR522053 SAMN01090495 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G2.M
SRR522054 SAMN01090496 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G2.M
SRR522055 SAMN01090497 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] G2.M
SRR522056 SAMN01090498 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] M.G1
SRR522057 SAMN01090499 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] M.G1
SRR522058 SAMN01090500 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522059 SAMN01090501 Mus musculus Brain (Midbrain) Adult Brain Illumina Smart-Seq RNA-Seq Single-End MA:0000168 [brain] M.G1
SRR522060 SAMN01090502 Mus musculus Oocyte Embryo Oocyte Illumina Smart-Seq RNA-Seq Single-End FMA:18644 [Oocyte] G2
SRR522061 SAMN01090503 Mus musculus Oocyte Embryo Oocyte Illumina Smart-Seq RNA-Seq Single-End FMA:18644 [Oocyte] G2
SRR522062 SAMN01090504 Mus musculus Oocyte Embryo Oocyte Illumina Smart-Seq RNA-Seq Single-End FMA:18644 [Oocyte] G2
SRR522063 SAMN01090505 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522064 SAMN01090506 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522065 SAMN01090507 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522066 SAMN01090508 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522067 SAMN01090509 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522068 SAMN01090510 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522069 SAMN01090511 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522070 SAMN01090512 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522071 SAMN01090513 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] M.G1
SRR522072 SAMN01090514 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522073 SAMN01090515 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522074 SAMN01090516 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522075 SAMN01090517 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] M.G1
SRR522076 SAMN01090518 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522077 SAMN01090519 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522078 SAMN01090520 Homo sapiens Brain Adult Brain cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End MA:0000168 [brain] S
SRR522079 SAMN01090521 Homo sapiens Blood Adult Blood cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End G2
SRR522080 SAMN01090522 Homo sapiens Blood Adult Blood cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End G1.S
SRR522081 SAMN01090523 Homo sapiens Human embryonic stem cell Embryo hESC Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CL:0002322 [embryonic stem cell] G1.S
SRR522082 SAMN01090524 Homo sapiens Human embryonic stem cell Embryo hESC Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CL:0002322 [embryonic stem cell] G2.M
SRR522083 SAMN01090525 Homo sapiens Human embryonic stem cell Embryo hESC Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR522084 SAMN01090526 Homo sapiens Human embryonic stem cell Embryo hESC Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CL:0002322 [embryonic stem cell] S
SRR522085 SAMN01090527 Homo sapiens Human embryonic stem cell Embryo hESC Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CL:0002322 [embryonic stem cell] S
SRR522086 SAMN01090528 Homo sapiens Human embryonic stem cell Embryo hESC Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CL:0002322 [embryonic stem cell] G2
SRR522087 SAMN01090529 Homo sapiens Human embryonic stem cell Embryo hESC Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR522088 SAMN01090530 Homo sapiens Human embryonic stem cell Embryo hESC Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CL:0002322 [embryonic stem cell] S
SRR522089 SAMN01090531 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 M.G1
SRR522090 SAMN01090532 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 G2.M
SRR522091 SAMN01090533 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 M.G1
SRR522092 SAMN01090534 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 G1.S
SRR522093 SAMN01090535 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 M.G1
SRR522094 SAMN01090536 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 G1.S
SRR522095 SAMN01090537 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 M.G1
SRR522096 SAMN01090538 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 G2.M
SRR522097 SAMN01090539 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 G1.S
SRR522098 SAMN01090540 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 G2.M
SRR522099 SAMN01090541 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 M.G1
SRR522100 SAMN01090542 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 S
SRR522101 SAMN01090543 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 G2.M
SRR522102 SAMN01090544 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 S
SRR522103 SAMN01090545 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 M.G1
SRR522104 SAMN01090546 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 M.G1
SRR522105 SAMN01090547 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 M.G1
SRR522106 SAMN01090548 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 S
SRR522107 SAMN01090549 Homo sapiens Prostate Adult LNCaP cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0037116 M.G1
SRR522108 SAMN01090550 Homo sapiens Skin Adult NG2-sorted cell from blood Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End BTO:0004844[metastatic renal cell carcinoma cell] G2.M
SRR522109 SAMN01090551 Homo sapiens Skin Adult NG2-sorted cell from blood Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End BTO:0004844[metastatic renal cell carcinoma cell] G2.M
SRR522110 SAMN01090552 Homo sapiens Skin Adult NG2-sorted cell from blood Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End BTO:0004844[metastatic renal cell carcinoma cell] G2.M
SRR522111 SAMN01090553 Homo sapiens Skin Adult NG2-sorted cell from blood Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End BTO:0004844[metastatic renal cell carcinoma cell] G2.M
SRR522112 SAMN01090554 Homo sapiens Skin Adult NG2-sorted cell from blood Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End BTO:0004844[metastatic renal cell carcinoma cell] G1.S
SRR522113 SAMN01090555 Homo sapiens Skin Adult NG2-sorted cell from blood Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End BTO:0004844[metastatic renal cell carcinoma cell] G2.M
SRR522114 SAMN01090556 Homo sapiens Prostate Adult PC3 cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End EFO:0002074 S
SRR522115 SAMN01090557 Homo sapiens Prostate Adult PC3 cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End EFO:0002074 G2
SRR522116 SAMN01090558 Homo sapiens Prostate Adult PC3 cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End EFO:0002074 M.G1
SRR522117 SAMN01090559 Homo sapiens Prostate Adult PC3 cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End EFO:0002074 S
SRR522118 SAMN01090560 Homo sapiens Skin Adult Primary melanocyte Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CL:0000148 [melanocyte] G1.S
SRR522119 SAMN01090561 Homo sapiens Skin Adult Primary melanocyte Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CL:0000148 [melanocyte] G1.S
SRR522120 SAMN01090562 Homo sapiens Skin Adult SKMEL5 cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End EFO:0005720 S
SRR522121 SAMN01090563 Homo sapiens Skin Adult SKMEL5 cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End EFO:0005720 M.G1
SRR522122 SAMN01090564 Homo sapiens Skin Adult SKMEL5 cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End EFO:0005720 M.G1
SRR522123 SAMN01090565 Homo sapiens Skin Adult SKMEL5 cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End EFO:0005720 S
SRR522124 SAMN01090566 Homo sapiens Bladder Adult T24 cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0009245 S
SRR522125 SAMN01090567 Homo sapiens Bladder Adult T24 cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0009245 G2
SRR522126 SAMN01090568 Homo sapiens Bladder Adult T24 cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0009245 G2
SRR522127 SAMN01090569 Homo sapiens Bladder Adult T24 cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End CLO:0009245 S
SRR522128 SAMN01090570 Homo sapiens Skin Adult UACC257 cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End BTO:0004233[UACC-257 cell] M.G1
SRR522129 SAMN01090571 Homo sapiens Skin Adult UACC257 cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End BTO:0004233[UACC-257 cell] G1.S
SRR522130 SAMN01090572 Homo sapiens Skin Adult UACC257 cell Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End BTO:0004233[UACC-257 cell] M.G1
SRR522131 SAMN01090573 Homo sapiens Universal human reference RNA Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End SO:0000356 [RNA] S SRR522132 GSE38495
SRR522133 SAMN01090575 Homo sapiens Universal human reference RNA Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End SO:0000356 [RNA] S SRR522134 GSE38495
SRR522135 SAMN01090577 Homo sapiens Universal human reference RNA Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End SO:0000356 [RNA] S SRR522136 GSE38495
SRR522137 SAMN01090579 Homo sapiens Universal human reference RNA Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End SO:0000356 [RNA] S SRR522138 GSE38495
SRR522139 SAMN01090581 Homo sapiens Universal human reference RNA Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End SO:0000356 [RNA] S SRR522140 GSE38495
SRR522141 SAMN01090583 Homo sapiens Universal human reference RNA Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End SO:0000356 [RNA] S SRR522142 GSE38495
SRR522143 SAMN01090585 Homo sapiens Universal human reference RNA Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End SO:0000356 [RNA] S SRR522144 GSE38495
SRR522145 SAMN01090587 Homo sapiens Universal human reference RNA Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End SO:0000356 [RNA] S SRR522146 GSE38495
SRR522147 SAMN01090589 Homo sapiens Universal human reference RNA Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End SO:0000356 [RNA] S SRR522148 GSE38495
SRR522149 SAMN01090591 Homo sapiens Universal human reference RNA Illumina Genome Analyzer IIx Smart-Seq RNA-Seq Single-End SO:0000356 [RNA] S SRR522150 GSE38495

FASTQC Report



FASTQC File ID Cell Accession Number FASTQC Report Link No. Sequence Tags
SRR522030_1 SRR522030 Preview 31952187
SRR522031_1 SRR522031 Preview 33147811
SRR522032_1 SRR522032 Preview 28026279
SRR522033_1 SRR522033 Preview 28651201
SRR522034_1 SRR522034 Preview 28244175
SRR522035_1 SRR522035 Preview 26428318
SRR522036_1 SRR522036 Preview 20428401
SRR522037_1 SRR522037 Preview 29153470
SRR522038_1 SRR522038 Preview 27896730
SRR522039_1 SRR522039 Preview 23643734
SRR522040_1 SRR522040 Preview 26123825
SRR522041_1 SRR522041 Preview 29038282
SRR522042_1 SRR522042 Preview 26524622
SRR522043_1 SRR522043 Preview 26238878
SRR522044_1 SRR522044 Preview 23654327
SRR522045_1 SRR522045 Preview 28276936
SRR522046_1 SRR522046 Preview 26396208
SRR522047_1 SRR522047 Preview 25497707
SRR522048_1 SRR522048 Preview 43519649
SRR522049_1 SRR522049 Preview 39195991
SRR522050_1 SRR522050 Preview 37332264
SRR522051_1 SRR522051 Preview 41097635
SRR522052_1 SRR522052 Preview 35326833
SRR522053_1 SRR522053 Preview 44193611
SRR522054_1 SRR522054 Preview 53767063
SRR522055_1 SRR522055 Preview 39462287
SRR522056_1 SRR522056 Preview 31943008
SRR522057_1 SRR522057 Preview 28511972
SRR522058_1 SRR522058 Preview 34583252
SRR522059_1 SRR522059 Preview 35370644
SRR522060_1 SRR522060 Preview 20028846
SRR522061_1 SRR522061 Preview 20397597
SRR522062_1 SRR522062 Preview 15776788
SRR522063_1 SRR522063 Preview 20963238
SRR522064_1 SRR522064 Preview 41550639
SRR522065_1 SRR522065 Preview 72603242
SRR522066_1 SRR522066 Preview 69105238
SRR522067_1 SRR522067 Preview 22027463
SRR522068_1 SRR522068 Preview 29643670
SRR522069_1 SRR522069 Preview 30746721
SRR522070_1 SRR522070 Preview 34538554
SRR522071_1 SRR522071 Preview 29632159
SRR522072_1 SRR522072 Preview 26586227
SRR522073_1 SRR522073 Preview 36242796
SRR522074_1 SRR522074 Preview 27195847
SRR522075_1 SRR522075 Preview 34518051
SRR522076_1 SRR522076 Preview 32573398
SRR522077_1 SRR522077 Preview 31123064
SRR522078_1 SRR522078 Preview 29233996
SRR522079_1 SRR522079 Preview 1089998
SRR522080_1 SRR522080 Preview 663835
SRR522081_1 SRR522081 Preview 32005877
SRR522082_1 SRR522082 Preview 32031874
SRR522083_1 SRR522083 Preview 32632855
SRR522084_1 SRR522084 Preview 26822612
SRR522085_1 SRR522085 Preview 29081401
SRR522086_1 SRR522086 Preview 27637598
SRR522087_1 SRR522087 Preview 28866226
SRR522088_1 SRR522088 Preview 27666026
SRR522089_1 SRR522089 Preview 30082761
SRR522090_1 SRR522090 Preview 33483537
SRR522091_1 SRR522091 Preview 25431591
SRR522092_1 SRR522092 Preview 33218769
SRR522093_1 SRR522093 Preview 29129835
SRR522094_1 SRR522094 Preview 26818908
SRR522095_1 SRR522095 Preview 33733142
SRR522096_1 SRR522096 Preview 34173080
SRR522097_1 SRR522097 Preview 34367936
SRR522098_1 SRR522098 Preview 38912248
SRR522099_1 SRR522099 Preview 33972212
SRR522100_1 SRR522100 Preview 37601870
SRR522101_1 SRR522101 Preview 33957366
SRR522102_1 SRR522102 Preview 40598193
SRR522103_1 SRR522103 Preview 34456753
SRR522104_1 SRR522104 Preview 37110023
SRR522105_1 SRR522105 Preview 33724144
SRR522106_1 SRR522106 Preview 36937230
SRR522107_1 SRR522107 Preview 35312070
SRR522108_1 SRR522108 Preview 26676300
SRR522109_1 SRR522109 Preview 35319012
SRR522110_1 SRR522110 Preview 32856475
SRR522111_1 SRR522111 Preview 37150617
SRR522112_1 SRR522112 Preview 36211672
SRR522113_1 SRR522113 Preview 31014591
SRR522114_1 SRR522114 Preview 26349606
SRR522115_1 SRR522115 Preview 25515992
SRR522116_1 SRR522116 Preview 26341652
SRR522117_1 SRR522117 Preview 27492851
SRR522118_1 SRR522118 Preview 32484511
SRR522119_1 SRR522119 Preview 28662645
SRR522120_1 SRR522120 Preview 26575823
SRR522121_1 SRR522121 Preview 33827012
SRR522122_1 SRR522122 Preview 32539399
SRR522123_1 SRR522123 Preview 37790978
SRR522124_1 SRR522124 Preview 27703451
SRR522125_1 SRR522125 Preview 27417401
SRR522126_1 SRR522126 Preview 28648368
SRR522127_1 SRR522127 Preview 25936670
SRR522128_1 SRR522128 Preview 27545351
SRR522129_1 SRR522129 Preview 28390312
SRR522130_1 SRR522130 Preview 34787377
SRR522131_1 SRR522131 Preview 32464829
SRR522132_1 SRR522132 Preview 41206039
SRR522133_1 SRR522133 Preview 30847454
SRR522134_1 SRR522134 Preview 40799856
SRR522135_1 SRR522135 Preview 29743480
SRR522136_1 SRR522136 Preview 35099636
SRR522137_1 SRR522137 Preview 48502380
SRR522138_1 SRR522138 Preview 52785720
SRR522139_1 SRR522139 Preview 35161354
SRR522140_1 SRR522140 Preview 29954313
SRR522141_1 SRR522141 Preview 29311056
SRR522142_1 SRR522142 Preview 27541899
SRR522143_1 SRR522143 Preview 32360030
SRR522144_1 SRR522144 Preview 34153493
SRR522145_1 SRR522145 Preview 31256043
SRR522146_1 SRR522146 Preview 26596379
SRR522147_1 SRR522147 Preview 31926854
SRR522148_1 SRR522148 Preview 25211221
SRR522149_1 SRR522149 Preview 27888611
SRR522150_1 SRR522150 Preview 35522682

Organism : Homo sapiens      Download :     File Size : 221M

Organism : Mus musculus      Download :     File Size : 72M

Human Cell Data

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tSNE image.
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PCA image.
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Gene Body Coverage image.

Mouse Cell Data

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tSNE image.
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PCA image.
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Gene Body Coverage image.

Data Resources


Organism Run Metadata Link Data Repository Link Pubmed Record Link Author Provided Files DAVID Annotation Chart Link DAVID Annotation Table Link Gene Body Coverage Matrix Link PCA Matrix Link Krona Plot Img Link Unmapped Reads Link Expression Correlation
Homo sapiens
Mus musculus