SCPortalen


Initiation of a conserved trophectoderm program in human, cow and mouse embryos.


Current understandings of cell specification in early mammalian pre-implantation development are based mainly on mouse studies. The first lineage differentiation event occurs at the morula stage, with outer cells initiating a trophectoderm (TE) placental progenitor program. The inner cell mass arises from inner cells during subsequent developmental stages and comprises precursor cells of the embryo proper and yolk sac1. Recent gene-expression analyses suggest that the mechanisms that regulate early lineage specification in the mouse may differ in other mammals, including human2-5 and cow6. Here we show the evolutionary conservation of a molecular cascade that initiates TE segregation in human, cow and mouse embryos. At the morula stage, outer cells acquire an apical-basal cell polarity, with expression of atypical protein kinase C (aPKC) at the contact-free domain, nuclear expression of Hippo signalling pathway effectors and restricted expression of TE-associated factors such as GATA3, which suggests initiation of a TE program. Furthermore, we demonstrate that inhibition of aPKC by small-molecule pharmacological modulation or Trim-Away protein depletion impairs TE initiation at the morula stage. Our comparative embryology analysis provides insights into early lineage specification and suggests that a similar mechanism initiates a TE program in human, cow and mouse embryos.

GSE36552 Samples



Cell Metadata and BAM Files

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BAM Files Run Accession Number Sample Accession Number Organism Organ/Tissue Dev. Stage Cell Type Sequencer Protocol Assay Type Library Layout Ontology Term Cell Cycle Phase
SRR445718 SAMN00828830 Homo sapiens Embryo Oocyte Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0000023[oocyte] G1.S
SRR445719 SAMN00828831 Homo sapiens Embryo Oocyte Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0000023[oocyte] G1.S
SRR445720 SAMN00828832 Homo sapiens Embryo Oocyte Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0000023[oocyte] G1.S
SRR445721 SAMN00828833 Homo sapiens Embryo Zygote Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0000365[zygote] G1.S
SRR445722 SAMN00828834 Homo sapiens Embryo Zygote Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0000365[zygote] G1.S
SRR445723 SAMN00828835 Homo sapiens Embryo Zygote Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0000365[zygote] G1.S
SRR445724 SAMN00828836 Homo sapiens Embryo 2-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G1.S
SRR445725 SAMN00828837 Homo sapiens Embryo 2-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G1.S
SRR445726 SAMN00828838 Homo sapiens Embryo 2-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G1.S
SRR445727 SAMN00828839 Homo sapiens Embryo 2-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G1.S
SRR445728 SAMN00828840 Homo sapiens Embryo 2-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G1.S
SRR445729 SAMN00828841 Homo sapiens Embryo 2-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G1.S
SRR445730 SAMN00828842 Homo sapiens Embryo Human embryonic stem cell hESC Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] G2
SRR445731 SAMN00828843 Homo sapiens Embryo Human embryonic stem cell hESC Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR490961 SAMN00989115 Homo sapiens Embryo 4-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2.M
SRR490962 SAMN00989116 Homo sapiens Embryo 4-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2.M
SRR490963 SAMN00989117 Homo sapiens Embryo 4-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2.M
SRR490964 SAMN00989118 Homo sapiens Embryo 4-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2.M
SRR490965 SAMN00989119 Homo sapiens Embryo 4-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G1.S
SRR490966 SAMN00989120 Homo sapiens Embryo 4-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G1.S
SRR490967 SAMN00989121 Homo sapiens Embryo 4-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G1.S
SRR490968 SAMN00989122 Homo sapiens Embryo 4-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G1.S
SRR490969 SAMN00989123 Homo sapiens Embryo 4-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G1.S
SRR490970 SAMN00989124 Homo sapiens Embryo 4-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G1.S
SRR490971 SAMN00989125 Homo sapiens Embryo 4-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G1.S
SRR490972 SAMN00989126 Homo sapiens Embryo 4-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G1.S
SRR490973 SAMN00989127 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490974 SAMN00989128 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490975 SAMN00989129 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR490976 SAMN00989130 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490977 SAMN00989131 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490978 SAMN00989132 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490979 SAMN00989133 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR490980 SAMN00989134 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490981 SAMN00989135 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR490982 SAMN00989136 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR490983 SAMN00989137 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR490984 SAMN00989138 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR490985 SAMN00989139 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490986 SAMN00989140 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490987 SAMN00989141 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490988 SAMN00989142 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490989 SAMN00989143 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR490990 SAMN00989144 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490991 SAMN00989145 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490992 SAMN00989146 Homo sapiens Embryo 8-cell stage Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490993 SAMN00989147 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490994 SAMN00989148 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR490995 SAMN00989149 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490996 SAMN00989150 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490997 SAMN00989151 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR490998 SAMN00989152 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR490999 SAMN00989153 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR491000 SAMN00989154 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR491001 SAMN00989155 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR491002 SAMN00989156 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491003 SAMN00989157 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR491004 SAMN00989158 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR491005 SAMN00989159 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR491006 SAMN00989160 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR491007 SAMN00989161 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR491008 SAMN00989162 Homo sapiens Embryo Morula Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR491009 SAMN00989163 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR491010 SAMN00989164 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR491011 SAMN00989165 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491012 SAMN00989166 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491013 SAMN00989167 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491014 SAMN00989168 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2.M
SRR491015 SAMN00989169 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491016 SAMN00989170 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR491017 SAMN00989171 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491018 SAMN00989172 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR491019 SAMN00989173 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491020 SAMN00989174 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR491021 SAMN00989175 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR491022 SAMN00989176 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2.M
SRR491023 SAMN00989177 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2
SRR491024 SAMN00989178 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491025 SAMN00989179 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491026 SAMN00989180 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491027 SAMN00989181 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491028 SAMN00989182 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] G2.M
SRR491029 SAMN00989183 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491030 SAMN00989184 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491031 SAMN00989185 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491032 SAMN00989186 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR491033 SAMN00989187 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491034 SAMN00989188 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491035 SAMN00989189 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR491036 SAMN00989190 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] S
SRR491037 SAMN00989191 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491038 SAMN00989192 Homo sapiens Embryo Late blastocyst Preimplantation blastome Illumina HiSeq 2000 TruSeq RNA-Seq Single-End FMA:72551[Blastomere] M.G1
SRR491039 SAMN00989193 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] G2
SRR491040 SAMN00989194 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR491041 SAMN00989195 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR491042 SAMN00989196 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] S
SRR491043 SAMN00989197 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR491045 SAMN00989199 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] G2
SRR491065 SAMN00989219 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] G2
SRR491066 SAMN00989220 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] S
SRR491067 SAMN00989221 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR491068 SAMN00989222 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR491069 SAMN00989223 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR491070 SAMN00989224 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR491071 SAMN00989225 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] G2
SRR491072 SAMN00989226 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] S
SRR491073 SAMN00989227 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] G2
SRR491074 SAMN00989228 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] S
SRR491075 SAMN00989229 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] S
SRR491076 SAMN00989230 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR491077 SAMN00989231 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] G2
SRR491078 SAMN00989232 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR491079 SAMN00989233 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR491080 SAMN00989234 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR491081 SAMN00989235 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] G2
SRR491082 SAMN00989236 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR491083 SAMN00989237 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR491084 SAMN00989238 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] G2
SRR491085 SAMN00989239 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] S
SRR491086 SAMN00989240 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] S
SRR491087 SAMN00989241 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] M.G1
SRR491088 SAMN00989242 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] S
SRR491089 SAMN00989243 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] S
SRR491090 SAMN00989244 Homo sapiens hESC Embryo Human embryonic stem cell Illumina HiSeq 2000 TruSeq RNA-Seq Single-End CL:0002322 [embryonic stem cell] G1.S

FASTQC Report



FASTQC File ID Cell Accession Number FASTQC Report Link No. Sequence Tags
SRR445718_1 SRR445718 Preview 32943665
SRR445719_1 SRR445719 Preview 30690825
SRR445720_1 SRR445720 Preview 25552876
SRR445721_1 SRR445721 Preview 36528347
SRR445722_1 SRR445722 Preview 32865315
SRR445723_1 SRR445723 Preview 41057289
SRR445724_1 SRR445724 Preview 50896528
SRR445725_1 SRR445725 Preview 51954904
SRR445726_1 SRR445726 Preview 49180773
SRR445727_1 SRR445727 Preview 52518698
SRR445728_1 SRR445728 Preview 48727188
SRR445729_1 SRR445729 Preview 59155370
SRR445730_1 SRR445730 Preview 31187123
SRR445731_1 SRR445731 Preview 37288388
SRR490961_1 SRR490961 Preview 49127668
SRR490962_1 SRR490962 Preview 45583212
SRR490963_1 SRR490963 Preview 47319865
SRR490964_1 SRR490964 Preview 31651487
SRR490965_1 SRR490965 Preview 58021187
SRR490966_1 SRR490966 Preview 53970537
SRR490967_1 SRR490967 Preview 48487342
SRR490968_1 SRR490968 Preview 62850846
SRR490969_1 SRR490969 Preview 53928812
SRR490970_1 SRR490970 Preview 52735750
SRR490971_1 SRR490971 Preview 38896352
SRR490972_1 SRR490972 Preview 58235449
SRR490973_1 SRR490973 Preview 31911442
SRR490974_1 SRR490974 Preview 30282390
SRR490975_1 SRR490975 Preview 33565816
SRR490976_1 SRR490976 Preview 33261944
SRR490977_1 SRR490977 Preview 27602538
SRR490978_1 SRR490978 Preview 32482770
SRR490979_1 SRR490979 Preview 28271452
SRR490980_1 SRR490980 Preview 31915232
SRR490981_1 SRR490981 Preview 34098900
SRR490982_1 SRR490982 Preview 32376268
SRR490983_1 SRR490983 Preview 19792800
SRR490984_1 SRR490984 Preview 22364554
SRR490985_1 SRR490985 Preview 47990468
SRR490986_1 SRR490986 Preview 42243898
SRR490987_1 SRR490987 Preview 36089791
SRR490988_1 SRR490988 Preview 48887034
SRR490989_1 SRR490989 Preview 42851497
SRR490990_1 SRR490990 Preview 47500857
SRR490991_1 SRR490991 Preview 33545010
SRR490992_1 SRR490992 Preview 43263115
SRR490993_1 SRR490993 Preview 44585235
SRR490994_1 SRR490994 Preview 28690806
SRR490995_1 SRR490995 Preview 27850586
SRR490996_1 SRR490996 Preview 39065873
SRR490997_1 SRR490997 Preview 33894431
SRR490998_1 SRR490998 Preview 29489887
SRR490999_1 SRR490999 Preview 24327382
SRR491000_1 SRR491000 Preview 29435822
SRR491001_1 SRR491001 Preview 39037531
SRR491002_1 SRR491002 Preview 37090751
SRR491003_1 SRR491003 Preview 25135705
SRR491004_1 SRR491004 Preview 41041777
SRR491005_1 SRR491005 Preview 33698770
SRR491006_1 SRR491006 Preview 36456083
SRR491007_1 SRR491007 Preview 26736090
SRR491008_1 SRR491008 Preview 36989021
SRR491009_1 SRR491009 Preview 44798733
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Organism : Homo sapiens

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File Size : 310M

Human Cell Data

Image Currently Unavailable
tSNE image.
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PCA image.
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Gene Body Coverage image.

Data Resources


Organism Run Metadata Link Data Repository Link Pubmed Record Link Author Provided Files DAVID Annotation Chart Link DAVID Annotation Table Link Gene Body Coverage Matrix Link PCA Matrix Link Krona Plot Img Link Unmapped Reads Link Expression Correlation
Homo sapiens