SCPortalen


Whole-islet RNA-sequencing analysis of human pancreas from healthy individuals and type 2 diabetes patients.


We performed whole-islet RNA-sequencing of human pancreatic islets from healthy and T2D individuals in order to compare the expression data to the corresponding single-cell RNA-sequencing data from the same donors (related single-cell study: Single-cell analysis of human pancreas and T2D, deposited at ArrayExpress under accession E-MTAB-5061).

E-MTAB-5060 Samples



Cell Metadata and BAM Files

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BAM Files Run Accession Number Sample Accession Number Organism Organ/Tissue Dev. Stage Cell Type Sequencer Protocol Assay Type Library Layout Ontology Term Cell Cycle Phase
ERR1629982 SAMEA4437008 Homo sapiens Islet of Langerhans Adult Whole islet NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000006 [Islet of Langerhans] S
ERR1629983 SAMEA4437009 Homo sapiens Islet of Langerhans Adult Whole islet NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000006 [Islet of Langerhans] G2.M
ERR1629984 SAMEA4437010 Homo sapiens Islet of Langerhans Adult Whole islet NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000006 [Islet of Langerhans] G1.S
ERR1629985 SAMEA4437011 Homo sapiens Islet of Langerhans Adult Whole islet NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000006 [Islet of Langerhans] M.G1
ERR1629986 SAMEA4437012 Homo sapiens Islet of Langerhans Adult Whole islet NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000006 [Islet of Langerhans] G2
ERR1629987 SAMEA4437013 Homo sapiens Islet of Langerhans Adult Whole islet NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000006 [Islet of Langerhans] G1.S
ERR1629988 SAMEA4437014 Homo sapiens Islet of Langerhans Adult Whole islet NextSeq 500 Smart‐Seq2 RNA-Seq Paired-end UBERON:0000006 [Islet of Langerhans] G2

FASTQC Report



FASTQC File ID Cell Accession Number FASTQC Report Link No. Sequence Tags
ERR1629982_1 ERR1629982 Preview 28623261
ERR1629982_2 ERR1629982 Preview 28623261
ERR1629983_1 ERR1629983 Preview 33634267
ERR1629983_2 ERR1629983 Preview 33634267
ERR1629984_1 ERR1629984 Preview 31291660
ERR1629984_2 ERR1629984 Preview 31291660
ERR1629985_1 ERR1629985 Preview 39948381
ERR1629985_2 ERR1629985 Preview 39948381
ERR1629986_1 ERR1629986 Preview 38556004
ERR1629986_2 ERR1629986 Preview 38556004
ERR1629987_1 ERR1629987 Preview 7602176
ERR1629987_2 ERR1629987 Preview 7602176
ERR1629988_1 ERR1629988 Preview 28878254
ERR1629988_2 ERR1629988 Preview 28878254


Organism : Homo sapiens

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File Size : 20M

Human Cell Data

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tSNE image.
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PCA image.
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Gene Body Coverage image.

Data Resources


Organism Run Metadata Link Data Repository Link Pubmed Record Link Author Provided Files DAVID Annotation Chart Link DAVID Annotation Table Link Gene Body Coverage Matrix Link PCA Matrix Link Krona Plot Img Link Unmapped Reads Link Expression Correlation
Homo sapiens