SCPortalen


Single-cell RNA sequencing of mouse embryos with Tal1 (Scl) knockout.


Tracing early mammalian lineage decisions by single cell genomics. Lewis Wolpert famously called gastrulation the most important time in your life. During this fascinating process, a pluripotent stem cell population in the early embryo gives rise to the three germ layers from which all organ systems develop. Cell signalling and transcriptional networks are known to regulate aspects of gastrulation, but the precise mechanisms have not been investigated at the single cell level. Thus, new principles remain to be discovered that govern the exit from naïve pluripotency, epigenetic priming, stochasticity in transcriptional programmes, symmetry breaking, and acquisition of heritable transcriptome patterns. We have brought together a consortium of experts in single cell genomics, mammalian postimplantation development, and computational biology to comprehensively tackle this challenge. We will apply recently established single cell genomics techniques for DNA, RNA, and DNA methylation to profile the majority of the cells in mouse postimplantation embryos. This will result in epigenetic and gene expression maps of most cells together with experimentally determined lineage relationships, hence populating a Waddingtonian landscape. Based on such maps, combinations of transcription factors and epigenetic modifiers will be used to experimentally direct differentiation in human iPS cells.

E-MTAB-4026 Samples



Cell Metadata and BAM Files

Bulk Download

BAM Files Run Accession Number Sample Accession Number Organism Organ/Tissue Dev. Stage Cell Type Sequencer Protocol Assay Type Library Layout Ontology Term Cell Cycle Phase
ERR1142363 SAMEA3528495 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142396 SAMEA3528528 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142422 SAMEA3528554 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142448 SAMEA3528580 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142449 SAMEA3528581 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142450 SAMEA3528582 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142451 SAMEA3528583 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142452 SAMEA3528584 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142455 SAMEA3528587 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142456 SAMEA3528588 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142457 SAMEA3528589 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142458 SAMEA3528590 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142459 SAMEA3528591 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142460 SAMEA3528592 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142461 SAMEA3528593 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142462 SAMEA3528594 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142469 SAMEA3528601 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142470 SAMEA3528602 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142471 SAMEA3528603 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142472 SAMEA3528604 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142473 SAMEA3528605 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142483 SAMEA3528615 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142484 SAMEA3528616 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142495 SAMEA3528627 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142496 SAMEA3528628 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142497 SAMEA3528629 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142507 SAMEA3528639 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142508 SAMEA3528640 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142509 SAMEA3528641 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142519 SAMEA3528651 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142520 SAMEA3528652 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142521 SAMEA3528653 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142522 SAMEA3528654 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142531 SAMEA3528663 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142532 SAMEA3528664 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142533 SAMEA3528665 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142534 SAMEA3528666 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142535 SAMEA3528667 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142536 SAMEA3528668 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142541 SAMEA3528673 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142542 SAMEA3528674 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142543 SAMEA3528675 Mus musculus Embryo Somitogenesis stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142544 SAMEA3528676 Mus musculus Embryo Neural plate stage Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142545 SAMEA3528677 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142546 SAMEA3528678 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142547 SAMEA3528679 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142552 SAMEA3528684 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142553 SAMEA3528685 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142554 SAMEA3528686 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142555 SAMEA3528687 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142556 SAMEA3528688 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142557 SAMEA3528689 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142567 SAMEA3528699 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142580 SAMEA3528712 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142592 SAMEA3528724 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142593 SAMEA3528725 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142603 SAMEA3528735 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142604 SAMEA3528736 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142616 SAMEA3528748 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142617 SAMEA3528749 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142618 SAMEA3528750 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142627 SAMEA3528759 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142628 SAMEA3528760 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142629 SAMEA3528761 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142630 SAMEA3528762 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142631 SAMEA3528763 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142632 SAMEA3528764 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142636 SAMEA3528768 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142637 SAMEA3528769 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142638 SAMEA3528770 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142639 SAMEA3528771 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142640 SAMEA3528772 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142641 SAMEA3528773 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142642 SAMEA3528774 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142643 SAMEA3528775 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142648 SAMEA3528780 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142649 SAMEA3528781 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142650 SAMEA3528782 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142651 SAMEA3528783 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142652 SAMEA3528784 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142653 SAMEA3528785 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142654 SAMEA3528786 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142661 SAMEA3528793 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142662 SAMEA3528794 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142663 SAMEA3528795 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142664 SAMEA3528796 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142676 SAMEA3528808 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142688 SAMEA3528820 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142699 SAMEA3528831 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142700 SAMEA3528832 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142711 SAMEA3528843 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142712 SAMEA3528844 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142713 SAMEA3528845 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142723 SAMEA3528855 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142724 SAMEA3528856 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142725 SAMEA3528857 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142726 SAMEA3528858 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142727 SAMEA3528859 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142728 SAMEA3528860 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142733 SAMEA3528865 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142734 SAMEA3528866 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142735 SAMEA3528867 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142769 SAMEA3528901 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142774 SAMEA3528906 Mus musculus Embryo Head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142832 SAMEA3528964 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142833 SAMEA3528965 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142834 SAMEA3528966 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142835 SAMEA3528967 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142839 SAMEA3528971 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142840 SAMEA3528972 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142841 SAMEA3528973 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142842 SAMEA3528974 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142843 SAMEA3528975 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142844 SAMEA3528976 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142845 SAMEA3528977 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142853 SAMEA3528985 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142854 SAMEA3528986 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142855 SAMEA3528987 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142856 SAMEA3528988 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142867 SAMEA3528999 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142868 SAMEA3529000 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142880 SAMEA3529012 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142891 SAMEA3529023 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142892 SAMEA3529024 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142903 SAMEA3529035 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142904 SAMEA3529036 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142905 SAMEA3529037 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142906 SAMEA3529038 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142907 SAMEA3529039 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142913 SAMEA3529045 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142914 SAMEA3529046 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142915 SAMEA3529047 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142916 SAMEA3529048 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142917 SAMEA3529049 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142918 SAMEA3529050 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142919 SAMEA3529051 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142920 SAMEA3529052 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142924 SAMEA3529056 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142925 SAMEA3529057 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142926 SAMEA3529058 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142927 SAMEA3529059 Mus musculus Embryo Late head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1142928 SAMEA3529060 Mus musculus Embryo Neural plate stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None
ERR1143040 SAMEA3529172 Mus musculus Embryo Neural plate/head fold stage Embryo Illumina HiSeq 2000 Smart‐Seq2 RNA-Seq Paired-End UBERON:0000926 [Mesoderm] None

FASTQC Report



FASTQC File ID Cell Accession Number FASTQC Report Link No. Sequence Tags
ERR1142363_1 ERR1142363 Preview 69675
ERR1142363_2 ERR1142363 Preview 69675
ERR1142396_1 ERR1142396 Preview 277419
ERR1142396_2 ERR1142396 Preview 277419
ERR1142422_1 ERR1142422 Preview 2383
ERR1142422_2 ERR1142422 Preview 2383
ERR1142448_1 ERR1142448 Preview 77069
ERR1142448_2 ERR1142448 Preview 77069
ERR1142449_1 ERR1142449 Preview 71448
ERR1142449_2 ERR1142449 Preview 71448
ERR1142450_1 ERR1142450 Preview 321229
ERR1142450_2 ERR1142450 Preview 321229
ERR1142451_1 ERR1142451 Preview 310103
ERR1142451_2 ERR1142451 Preview 310103
ERR1142452_1 ERR1142452 Preview 86894
ERR1142452_2 ERR1142452 Preview 86894
ERR1142455_1 ERR1142455 Preview 115487
ERR1142455_2 ERR1142455 Preview 115487
ERR1142456_1 ERR1142456 Preview 266595
ERR1142456_2 ERR1142456 Preview 266595
ERR1142457_1 ERR1142457 Preview 354864
ERR1142457_2 ERR1142457 Preview 354864
ERR1142458_1 ERR1142458 Preview 729611
ERR1142458_2 ERR1142458 Preview 729611
ERR1142459_1 ERR1142459 Preview 503188
ERR1142459_2 ERR1142459 Preview 503188
ERR1142460_1 ERR1142460 Preview 93359
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Organism : Mus musculus

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File Size : 323M

Mouse Cell Data

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tSNE image.
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PCA image.
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Gene Body Coverage image.

Data Resources


Organism Run Metadata Link Data Repository Link Pubmed Record Link Author Provided Files DAVID Annotation Chart Link DAVID Annotation Table Link Gene Body Coverage Matrix Link PCA Matrix Link Krona Plot Img Link Unmapped Reads Link Expression Correlation
Mus musculus